BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15670
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQP-HVSWSA-NPKDHYVLCMTDPDAPSRDYPIAREWH 186
+V+Y G LG LTPTQVK +P ++W +P Y L +TDPDAPSR P REWH
Sbjct: 25 QVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREWH 84
Query: 187 HWLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHG 246
H+L+ N+KG N+ LS Y+G+GPPK TG HRY +LVY+Q DEP L + S
Sbjct: 85 HFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDH 144
Query: 247 RANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
R F +A F KKY+LG P+A + AE+DDYVPKLYE+L G
Sbjct: 145 RGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLYEQLSG 185
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 20/109 (18%)
Query: 299 LGNKLTPTQVKVEP-NVTWSA-NPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDN 356
LG LTPTQVK P ++TW +P Y L + DPDAPSR +
Sbjct: 36 LGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLT------------------DPDAPSRKD 77
Query: 357 PTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQ 405
P +EWHH+L+ N+KG ++ LS Y+G+GPPK TGLHRYV+LVY+Q
Sbjct: 78 PKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQ 126
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQP-HVSWSA-NPKDHYVLCMTDPDAPSRDYPIAREWH 186
+V+Y G LG LTPTQVK +P ++W +P Y L +TDPDAPSR P REWH
Sbjct: 25 QVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREWH 84
Query: 187 HWLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHG 246
H+L+ N+KG N+ LS Y+G+GPPK TG HRY +LVY+Q DEP L + S
Sbjct: 85 HFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDH 144
Query: 247 RANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
R F +A F KKY+LG P+A + AE+DDYVPKLYE+L G
Sbjct: 145 RGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLYEQLSG 185
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 20/109 (18%)
Query: 299 LGNKLTPTQVKVEP-NVTWSA-NPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDN 356
LG LTPTQVK P ++TW +P Y L + DPDAPSR +
Sbjct: 36 LGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLT------------------DPDAPSRKD 77
Query: 357 PTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQ 405
P +EWHH+L+ N+KG ++ LS Y+G+GPPK TGLHRYV+LVY+Q
Sbjct: 78 PKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQ 126
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 103/165 (62%), Gaps = 2/165 (1%)
Query: 125 REICKVEYPGNVSVNLGNTLTPTQVKEQP-HVSWSA-NPKDHYVLCMTDPDAPSRDYPIA 182
+ + +V Y LG LTPTQVK +P +SW +P Y L +TDPDAPSR P+
Sbjct: 18 QHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPVY 77
Query: 183 REWHHWLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHN 242
REWHH+L+ N+KG ++ + LS Y+G+GPPK TG HRY +LVY+Q DEP L +
Sbjct: 78 REWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTNR 137
Query: 243 SIHGRANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
S R F A F KKY LG P+A + AE+D YVPKLY++L G
Sbjct: 138 SGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPKLYKQLSG 182
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 70/120 (58%), Gaps = 18/120 (15%)
Query: 289 VEYPDGVQVYLGNKLTPTQVKVEP-NVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKE 347
V Y + LG LTPTQVK P +++W G +PG L +
Sbjct: 23 VTYTEAEVEELGQVLTPTQVKHRPGSISWD------------GLDPG-----KLYTLILT 65
Query: 348 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPK 407
DPDAPSR P +EWHH+L+ N+KG D+ + LS Y+G+GPPK TGLHRYV+LVY+Q K
Sbjct: 66 DPDAPSRKKPVYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDK 125
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 130 VEYPGNVSVNLGNTLTPTQVKEQP-HVSWSA-NPKDHYVLCMTDPDAPSRDYPIAREWHH 187
V Y G LG LTPTQVK +P +SW + Y L +TDPDAPSR P REWHH
Sbjct: 27 VTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHH 86
Query: 188 WLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHGR 247
+L+ N+KG ++ LS Y+G+GPPK TG HRY +LVY+Q DEP L + S R
Sbjct: 87 FLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHR 146
Query: 248 ANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
F +A F KKY+L P+A + AE+DDYVPKLYE+L G
Sbjct: 147 GKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYEQLSG 186
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 18/120 (15%)
Query: 289 VEYPDGVQVYLGNKLTPTQVKVEP-NVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKE 347
V Y LG LTPTQVK P +++W G + G L +
Sbjct: 27 VTYAGAAVDELGKVLTPTQVKNRPTSISWD------------GLDSG-----KLYTLVLT 69
Query: 348 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPK 407
DPDAPSR +P +EWHH+L+ N+KG D+ LS Y+G+GPPK TGLHRYV+LVY+Q +
Sbjct: 70 DPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDR 129
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQPH-VSWSA-NPKDHYVLCMTDPDAPSRDYPIAREWH 186
+V+Y G LG LTPTQV +P +SW +P Y L +TDPDAPSR P REWH
Sbjct: 26 RVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWH 85
Query: 187 HWLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHG 246
H+L+ N+KG ++ LS Y+G+GPPK TG HRY +LVY+Q DEP L + S
Sbjct: 86 HFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDN 145
Query: 247 RANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
R F + +F KKY LG P+A F AE+DD VPKL+++L G
Sbjct: 146 RGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQLAG 186
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 20/109 (18%)
Query: 299 LGNKLTPTQVKVEPN-VTWSA-NPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDN 356
LG LTPTQV P+ ++W +P Y L + DPDAPSR +
Sbjct: 37 LGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLT------------------DPDAPSRKD 78
Query: 357 PTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQ 405
P +EWHH+L+ N+KG D+ LS Y+G+GPPK+TGLHRYV+LVY+Q
Sbjct: 79 PKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQ 127
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 100/161 (62%), Gaps = 2/161 (1%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQPH-VSWSA-NPKDHYVLCMTDPDAPSRDYPIAREWH 186
+V+Y G LG LTPTQV +P +SW +P Y L +TDPDAPSR P REWH
Sbjct: 29 RVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWH 88
Query: 187 HWLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHG 246
H+L+ N+KG ++ LS Y+G+GPPK TG HRY +LVY+Q DEP L + S
Sbjct: 89 HFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDN 148
Query: 247 RANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
R F + F KKY LG P+A F AE+DD VPKL+++L G
Sbjct: 149 RGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQLAG 189
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 18/108 (16%)
Query: 299 LGNKLTPTQVKVEPN-VTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNP 357
LG LTPTQV P+ ++W G +PG L + DPDAPSR +P
Sbjct: 40 LGKVLTPTQVMNRPSSISWD------------GLDPG-----KLYTLVLTDPDAPSRKDP 82
Query: 358 TVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQ 405
+EWHH+L+ N+KG D+ LS Y+G+GPPK+TGLHRYV+LVY+Q
Sbjct: 83 KFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQ 130
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 100/164 (60%), Gaps = 5/164 (3%)
Query: 128 CKVEYPGNVSVNLGNTLTPTQVKEQPHVSWSA--NPKDHYVLCMTDPDAPSRDYPIAREW 185
KV Y ++ V GN LTPTQVK+QP VSWS + L M DPDAP+R P RE
Sbjct: 17 IKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPTRQDPKYREI 76
Query: 186 HHWLMGNIKGGNL--EGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNS 243
HW + NI G N G L+ Y+G+GPPK TG HRY FL+Y+Q N + + P + + +
Sbjct: 77 LHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQEN-KIEETPTISNTT 135
Query: 244 IHGRANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
GR NF+ FA K+ LG+PIA NY+ A++DDYVP + + G
Sbjct: 136 RTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIRNKTIVG 179
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 21/141 (14%)
Query: 274 FDDYVPKLYEKL-FGSVE--YPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIG 330
DD VP + + + G+++ Y D ++V GN+LTPTQVK +P V+WS
Sbjct: 1 MDDIVPDVLDAVPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWS------------- 47
Query: 331 SNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEAD--HLSRYIGAG 388
G LL + DPDAP+R +P +E HW + NI G + + L+ Y+G+G
Sbjct: 48 ---GLEGKSNLLTLLMVDPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSG 104
Query: 389 PPKNTGLHRYVFLVYKQPKFI 409
PPK+TGLHRY+FL+Y+Q I
Sbjct: 105 PPKDTGLHRYIFLLYRQENKI 125
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 38/184 (20%)
Query: 127 ICKVEYPGNVSVNLGNTLTPTQVKEQPHVSWSANPK----------------DHYVLCMT 170
I VEY + V +GNTL + + +P ++ N + D + L MT
Sbjct: 36 ILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMT 95
Query: 171 DPDAPSRDYPIAREWHHWLMGNIK----------GG--------NLEGADHLSRYIGAGP 212
DPDAPS+ E+ H + ++K G N +G++ L Y+G P
Sbjct: 96 DPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAP 155
Query: 213 PKQTGPHRYAFLVYKQP---NYTVFDEPRLMHNSIHGRANFSIAKFAKKYKLGDPIAVNY 269
PK +GPHRY FL+YKQP + + F + + N +G + K+AK+ L +A N+
Sbjct: 156 PKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNL-QLVASNF 214
Query: 270 FLAE 273
F AE
Sbjct: 215 FYAE 218
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 288 SVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKE 347
+VEY V +GN L + + +P ++ N + + +N + L +
Sbjct: 38 AVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQ--ANAYVPQDDDLFTLVMT 95
Query: 348 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADH--------------------LSRYIGA 387
DPDAPS+ + E+ H + ++K L EA H L Y+G
Sbjct: 96 DPDAPSKTDHKWSEFCHLVECDLKL--LNEATHETSGATEFFASEFNTKGSNTLIEYMGP 153
Query: 388 GPPKNTGLHRYVFLVYKQPK 407
PPK +G HRYVFL+YKQPK
Sbjct: 154 APPKGSGPHRYVFLLYKQPK 173
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 18/148 (12%)
Query: 128 CKVEYPGNVSVNLGNTLTPTQVKEQPHVSWSANP-KDHYVLCMTDPDAPSRDYPIAREWH 186
KV Y G+ +V+ G L P+ V QP V N + Y L M DPDAPS P RE+
Sbjct: 30 LKVTY-GSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPSDPNLREYL 88
Query: 187 HWLMGNIKGGNLEGADHLSRYIGAGPPKQT-GPHRYAFLVYKQPNYTVFDEPRLMHNSIH 245
HWL+ +I G A + P+ T G HR F++++Q L +++
Sbjct: 89 HWLVTDIPG--TTAASFGQEVMSYESPRPTMGIHRLVFVLFQQ----------LGRQTVY 136
Query: 246 G---RANFSIAKFAKKYKLGDPIAVNYF 270
R NF+ FA+ Y LG P+A YF
Sbjct: 137 APGWRQNFNTKDFAELYNLGSPVAAVYF 164
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 30/147 (20%)
Query: 263 DPIAVNYFLAE-FDDYVPKLYEKL-FGSVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANP 320
DP+ V + + D +V K+ +GS +G++ L P+ V +P V N
Sbjct: 9 DPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLE------LKPSMVTHQPRVEVGGND 62
Query: 321 -KDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEAD 379
+ Y L M+ DPDAPS +P ++E+ HWL+ +I G A
Sbjct: 63 MRTFYTLVMV------------------DPDAPSPSDPNLREYLHWLVTDIPG--TTAAS 102
Query: 380 HLSRYIGAGPPKNT-GLHRYVFLVYKQ 405
+ P+ T G+HR VF++++Q
Sbjct: 103 FGQEVMSYESPRPTMGIHRLVFVLFQQ 129
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
Query: 128 CKVEYPGNVSVNLGNTLTPTQVKEQPHVSWSA-NPKDHYVLCMTDPDAPSRDYPIAREWH 186
KV Y G V G L P+QV+ +P V + ++ Y L M DPD PS P RE+
Sbjct: 31 LKVTY-GQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYL 89
Query: 187 HWLMGNIKG--GNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSI 244
HWL+ +I G G + +S P G HR F++++Q L ++
Sbjct: 90 HWLVTDIPATTGTTFGNEIVSY---ENPSPTAGIHRVVFILFRQ----------LGRQTV 136
Query: 245 HG---RANFSIAKFAKKYKLGDPIAVNYFLAE 273
+ R NF+ +FA+ Y LG P+A ++ ++
Sbjct: 137 YAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQ 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 296 QVYLGNKLTPTQVKVEPNVTWSANPKDN-YVLAMIGSNPGCSLSEALLPIRKEDPDAPSR 354
+V G L P+QV+ +P V N Y L M+ DPD PS
Sbjct: 39 EVTNGLNLRPSQVQNKPRVEIGGEDLRNFYTLVMV------------------DPDVPSP 80
Query: 355 DNPTVKEWHHWLMGNIKGGD-LEEADHLSRYIGAGPPKNTGLHRYVFLVYKQ 405
NP ++E+ HWL+ +I + + Y P G+HR VF++++Q
Sbjct: 81 SNPHLREYLHWLVTDIPATTGTTFGNEIVSY--ENPSPTAGIHRVVFILFRQ 130
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%)
Query: 138 VNLGNTLTPTQVKEQPHVSW-SANPKDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGG 196
V+ G+ L P+ V +P V + + + L M DPD P P +E HW++ NI G
Sbjct: 43 VSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGT 102
Query: 197 N--LEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHGRANFSIAK 254
G + +S + P G HR+ F++++Q + R++ +I R +F+ K
Sbjct: 103 TDATFGKEVVSYEL---PRPSIGIHRFVFVLFRQ------KQRRVIFPNIPSRDHFNTRK 153
Query: 255 FAKKYKLGDPIAVNYFLAE 273
FA +Y LG P+A +F A+
Sbjct: 154 FAVEYDLGLPVAAVFFNAQ 172
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 22/112 (19%)
Query: 296 QVYLGNKLTPTQVKVEPNVTW-SANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSR 354
QV G++L P+ V +P V + + + L MI DPD P
Sbjct: 42 QVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMI------------------DPDVPGP 83
Query: 355 DNPTVKEWHHWLMGNIKG-GDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQ 405
+P +KE HW++ NI G D + Y P + G+HR+VF++++Q
Sbjct: 84 SDPFLKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQ 133
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 141 GNTLTPTQVKEQPHVSW-SANPKDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGGNLE 199
G+ L P+ V P V + + + L MTDPD P P RE HW++ +I G
Sbjct: 45 GHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDS 104
Query: 200 --GADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHGRANFSIAKFAK 257
G + +S + P G HR+ FL++KQ ++ + R F+ KF +
Sbjct: 105 SFGKEVVSYEM---PRPNIGIHRFVFLLFKQKKRG----QAMLSPPVVCRDGFNTRKFTQ 157
Query: 258 KYKLGDPIAVNYF 270
+ +LG P+A +F
Sbjct: 158 ENELGLPVAAVFF 170
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 297 VYLGNKLTPTQVKVEPNV-TWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRD 355
VY G++L P+ V P V + + + L M DPD P
Sbjct: 42 VYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIM------------------TDPDVPGPS 83
Query: 356 NPTVKEWHHWLMGNIKGG-DLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPK 407
+P ++E HW++ +I G D + Y P N G+HR+VFL++KQ K
Sbjct: 84 DPYLREHLHWIVTDIPGTTDSSFGKEVVSY--EMPRPNIGIHRFVFLLFKQKK 134
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 130 VEYPGNVSVNLGNTLTPTQVKEQP-HVSWSANPKDHY--VLCMTDPDAPSRDYPIAREWH 186
+ + VN GN L P ++ +S P D Y VL M DPD PSR P +E+
Sbjct: 48 ISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPDGKEYI 107
Query: 187 HWLMGNIKG-----GNLEGADHLSRYIGAGPPKQTGPHRYAFLV 225
HW++ IK G + + Y+G K TG HR +F++
Sbjct: 108 HWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFII 151
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 26/122 (21%)
Query: 289 VEYPDGVQVYLGNKLTPTQVKVEP-NVTWSANPKDNY--VLAMIGSNPGCSLSEALLPIR 345
+ + G +V GN L P N+ +S P D Y VL M+
Sbjct: 48 ISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMV---------------- 91
Query: 346 KEDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADH-----LSRYIGAGPPKNTGLHRYVF 400
DPD PSR P KE+ HW++ IK +L + + Y+G K TGLHR F
Sbjct: 92 --DPDYPSRLRPDGKEYIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISF 149
Query: 401 LV 402
++
Sbjct: 150 II 151
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 21/139 (15%)
Query: 94 RFELPPHHHEEQNVDKLLQD-LKINTGQALSSREICKVEYPGNVSVNLGNTLTPTQVKEQ 152
R ++ PH ++NVD + + +G+ ++ I + G+V N+ + E+
Sbjct: 20 REKIIPHVFPDENVDLTVDXYISFKSGKEVNHGNILDLAGTGSVPRNI-------KFSEE 72
Query: 153 PHVSWSANPKDH-YVLCMTDPDAPSRDYPIAREWHHWLMGNIKGGNL-EGADH----LSR 206
P P+D+ Y+L DPD PSR P R++ HW + IK L +G D L
Sbjct: 73 P-------PEDYCYILFXIDPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCITLLP 125
Query: 207 YIGAGPPKQTGPHRYAFLV 225
Y+G K TG HR +F++
Sbjct: 126 YVGPSIKKGTGLHRISFIL 144
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 289 VEYPDGVQVYLGNKLTPTQVKVEP-NVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKE 347
+ + G +V GN L P N+ +S P ++Y +
Sbjct: 41 ISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFXI---------------- 84
Query: 348 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADH-----LSRYIGAGPPKNTGLHRYVFLV 402
DPD PSR P +++ HW + IK +L + L Y+G K TGLHR F++
Sbjct: 85 DPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFIL 144
>pdb|1FUX|A Chain A, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
pdb|1FUX|B Chain B, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
Length = 166
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 41/135 (30%)
Query: 115 KINTGQALSSREICKVEYPGNVSVNLGNTLTPTQVKEQPHVSWSANPKD--HYVLCMTDP 172
+I TG+ L++ + GNT P ++WS P+ + + + DP
Sbjct: 9 EIKTGEQLTTSHVFS-----GFGCEGGNT--------SPSLTWSGVPEGTKSFAVTVYDP 55
Query: 173 DAPSRDYPIAREWHHWLMGNIKG-------------------GNLEGADHL--SRYIGAG 211
DAP+ W HW + NI G ++G + + + GA
Sbjct: 56 DAPT-----GSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGAC 110
Query: 212 PPKQTGPHRYAFLVY 226
PPK PH Y F V+
Sbjct: 111 PPKGDKPHHYQFKVW 125
>pdb|1VI3|A Chain A, Crystal Structure Of An Hypothetical Protein
Length = 170
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 28/97 (28%)
Query: 152 QPHVSWSANPKD--HYVLCMTDPDAPSRDYPIAREWHHWLMGNIKG-------------- 195
PH++W P +V+ DPDAP+ W HW++ N+
Sbjct: 33 SPHLAWDDVPAGTKSFVVTCYDPDAPT-----GSGWWHWVVVNLPADTRVLPQGFGSGLV 87
Query: 196 ----GNLEGADHLSR--YIGAGPPKQTGPHRYAFLVY 226
G L+ + Y GA PPK HRY F V+
Sbjct: 88 AXPDGVLQTRTDFGKTGYDGAAPPKGE-THRYIFTVH 123
>pdb|1FJJ|A Chain A, Crystal Structure Of E.Coli Ybhb Protein, A New Member Of
The Mammalian Pebp Family
Length = 159
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 28/97 (28%)
Query: 152 QPHVSWSANPKD--HYVLCMTDPDAPSRDYPIAREWHHWLMGNIKG-------------- 195
PH++W P +V+ DPDAP+ W HW++ N+
Sbjct: 32 SPHLAWDDVPAGTKSFVVTCYDPDAPT-----GSGWWHWVVVNLPADTRVLPQGFGSGLV 86
Query: 196 ----GNLEGADHLSR--YIGAGPPKQTGPHRYAFLVY 226
G L+ + Y GA PPK HRY F V+
Sbjct: 87 AXPDGVLQTRTDFGKTGYDGAAPPKGE-THRYIFTVH 122
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 34 VETVLTFVLLAHCTKGIRFELPPHHHEEQNVDKLLQD 70
+ V FV LA + E+ P HH+++ D L+QD
Sbjct: 201 IHCVSAFVKLAQSEYRLLMEIIPEHHQKKTFDSLIQD 237
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 236 EPRLMHNSIHGRANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFGSVEYPDGV 295
EPR +H ++HG + Y L P V F +F +FG V YPD +
Sbjct: 147 EPRTIHGTVHGPGYSGSKGITRAYTL--PEGVPDFTEDF---------HVFGIVWYPDKI 195
Query: 296 QVYL 299
+ Y+
Sbjct: 196 KWYV 199
>pdb|1NP6|A Chain A, Crystal Structure Of Escherichia Coli Mobb
pdb|1NP6|B Chain B, Crystal Structure Of Escherichia Coli Mobb
Length = 174
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 74 NTGQALSSREICKAHCTKGIRFELPPHHHEEQNVDK 109
TG+ +++ A C +GIR L H H + +VDK
Sbjct: 16 GTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDK 51
>pdb|1P9N|A Chain A, Crystal Structure Of Escherichia Coli Mobb.
pdb|1P9N|B Chain B, Crystal Structure Of Escherichia Coli Mobb
Length = 170
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 75 TGQALSSREICKAHCTKGIRFELPPHHHEEQNVDK 109
TG+ +++ A C +GIR L H H + +VDK
Sbjct: 13 TGKTTLLKKLIPALCARGIRPGLIKHTHHDXDVDK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,291,197
Number of Sequences: 62578
Number of extensions: 689715
Number of successful extensions: 1576
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1502
Number of HSP's gapped (non-prelim): 45
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)