Query psy15670
Match_columns 420
No_of_seqs 285 out of 2591
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 18:34:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3346|consensus 100.0 1.7E-47 3.8E-52 352.9 15.0 176 106-286 3-183 (185)
2 PLN00169 CETS family protein; 100.0 3.2E-42 6.9E-47 317.5 15.2 166 106-281 4-173 (175)
3 cd00866 PEBP_euk PhosphatidylE 100.0 7.4E-35 1.6E-39 262.1 15.8 146 127-272 2-154 (154)
4 KOG3346|consensus 100.0 1.3E-28 2.8E-33 227.6 10.0 110 286-413 26-138 (185)
5 PF01161 PBP: Phosphatidyletha 99.9 1.6E-26 3.5E-31 206.0 12.7 131 126-271 2-146 (146)
6 cd00866 PEBP_euk PhosphatidylE 99.9 7.1E-23 1.5E-27 184.2 9.9 112 288-415 4-120 (154)
7 cd00457 PEBP PhosphatidylEthan 99.9 3.9E-22 8.5E-27 181.5 12.6 123 137-271 6-158 (159)
8 PLN00169 CETS family protein; 99.9 7.4E-22 1.6E-26 182.3 9.0 107 286-412 27-134 (175)
9 cd00457 PEBP PhosphatidylEthan 99.8 1.3E-18 2.8E-23 158.4 10.7 92 300-412 11-129 (159)
10 PF01161 PBP: Phosphatidyletha 99.8 3E-19 6.6E-24 159.1 5.8 103 289-414 6-120 (146)
11 PRK09818 putative kinase inhib 99.7 8.1E-17 1.7E-21 149.8 10.4 92 303-415 44-157 (183)
12 PRK10257 putative kinase inhib 99.7 1.5E-16 3.3E-21 144.8 11.1 92 304-417 24-136 (158)
13 cd00865 PEBP_bact_arch Phospha 99.7 1.1E-16 2.3E-21 144.4 9.7 92 304-417 20-129 (150)
14 COG1881 Phospholipid-binding p 99.7 1.7E-16 3.7E-21 146.4 9.0 90 302-413 39-146 (174)
15 TIGR00481 Raf kinase inhibitor 99.7 4.9E-16 1.1E-20 139.1 9.8 91 305-418 9-121 (141)
16 PRK10257 putative kinase inhib 99.6 9.2E-15 2E-19 133.2 11.7 96 152-262 31-149 (158)
17 PRK09818 putative kinase inhib 99.6 4.7E-15 1E-19 138.0 9.8 79 152-235 52-154 (183)
18 cd00865 PEBP_bact_arch Phospha 99.6 7.2E-15 1.6E-19 132.5 10.1 78 151-234 26-123 (150)
19 COG1881 Phospholipid-binding p 99.5 2.4E-14 5.1E-19 132.2 10.7 97 151-262 47-163 (174)
20 TIGR00481 Raf kinase inhibitor 99.5 1.6E-13 3.4E-18 122.9 9.5 77 152-235 15-115 (141)
No 1
>KOG3346|consensus
Probab=100.00 E-value=1.7e-47 Score=352.93 Aligned_cols=176 Identities=49% Similarity=0.848 Sum_probs=164.1
Q ss_pred HHHHHHHhCCCCCC-CCCC-CceeEEEEeCCCcccCCCceeCccccccCCeEEEe--cCCCCeEEEEEEcCCCCCCCCCC
Q psy15670 106 NVDKLLQDLKINTG-QALS-SREICKVEYPGNVSVNLGNTLTPTQVKEQPHVSWS--ANPKDHYVLCMTDPDAPSRDYPI 181 (420)
Q Consensus 106 ~i~~af~~~~IiPD-l~~~-P~~~L~V~Y~~~~~V~~G~~L~p~~t~~~P~v~~~--~~~~~~YTLvMvDPDaP~~~~p~ 181 (420)
.+.+.+.+++|++| |+.. |.+.|+|+|.++..|++|++|+|++++.+|.|+|. ++++++|||||+|||||++++|+
T Consensus 3 ~~~~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~DPDaPsr~~p~ 82 (185)
T KOG3346|consen 3 DIRDPLNKHRIVPDVLDDFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLVMTDPDAPSRSDPK 82 (185)
T ss_pred chhhhhhccCcchhhhccCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEEEeCCCCCCCCCCc
Confidence 45678899999999 8764 99999999988899999999999999999999999 57889999999999999999999
Q ss_pred CcceeeEEEeecCCCc-cCCCcccccCcCCCCCCCCCCceEEEEEEeeCCCccCCccccCcCCcCCCcchhhHHHHHHhc
Q psy15670 182 AREWHHWLMGNIKGGN-LEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHGRANFSIAKFAKKYK 260 (420)
Q Consensus 182 ~~~~lHWLv~NIp~~~-l~~G~~i~~Y~gP~Pp~gtG~HRYvFlLf~Q~~~l~~~~~~l~~~s~~~R~~Fnl~~F~~~~~ 260 (420)
+++|||||++|||+++ +++|+++++|+||.||+|+|.|||||+||+|++++++.++ +...|.+|++++|+++++
T Consensus 83 ~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~-----~~~~R~~F~~~~F~~~~~ 157 (185)
T KOG3346|consen 83 FREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEP-----SPLSRGNFNTRKFAKKYE 157 (185)
T ss_pred ceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccC-----CCCcccceeHHHHHHHhc
Confidence 9999999999999998 9999999999999999999999999999999998876553 247899999999999999
Q ss_pred CCCcceeeeeeccccCCchhhhhhhc
Q psy15670 261 LGDPIAVNYFLAEFDDYVPKLYEKLF 286 (420)
Q Consensus 261 L~~pVAgnfF~aq~Dd~Vp~v~~~l~ 286 (420)
|+.||||+|||+|||++++.+++++.
T Consensus 158 lg~PvA~~~f~aq~d~~~~~~~~~~~ 183 (185)
T KOG3346|consen 158 LGTPVAGNFFQAQWDDYVPKLYKQLG 183 (185)
T ss_pred cCCchhhheehhhcchhhHHHHHhhc
Confidence 99999999999999999999988764
No 2
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=3.2e-42 Score=317.55 Aligned_cols=166 Identities=29% Similarity=0.447 Sum_probs=149.4
Q ss_pred HHHHHHHhCCCCCC-CC-CCCceeEEEEeCCCcccCCCceeCccccccCCeEEEecC-CCCeEEEEEEcCCCCCCCCCCC
Q psy15670 106 NVDKLLQDLKINTG-QA-LSSREICKVEYPGNVSVNLGNTLTPTQVKEQPHVSWSAN-PKDHYVLCMTDPDAPSRDYPIA 182 (420)
Q Consensus 106 ~i~~af~~~~IiPD-l~-~~P~~~L~V~Y~~~~~V~~G~~L~p~~t~~~P~v~~~~~-~~~~YTLvMvDPDaP~~~~p~~ 182 (420)
.++++|.+++|||| |+ |.|+..|+|+|+ +..|.+|+.|++++++++|+|+|.+. .+++|||+|+|||+|+++++++
T Consensus 4 ~~~~~l~~~~iipdvid~f~P~~~L~V~y~-s~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~ytlim~DpDaP~~~~~~~ 82 (175)
T PLN00169 4 RDRDPLVVGRVVGDVLDPFTRSISLRVTYG-SREVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMVDPDAPSPSNPNL 82 (175)
T ss_pred ccccchhhCCcCCcccCCcCCceEEEEEEC-CcCcCCcCCCCHHHhccCCEEEEccCCCCceeEEEEECCCCCCCCCCCc
Confidence 45688999999999 88 899999999995 57899999999999999999999864 4699999999999999999999
Q ss_pred cceeeEEEeecCCCc-cCCCcccccCcCCCCCCCCCCceEEEEEEeeCCCccCCccccCcCCcCCCcchhhHHHHHHhcC
Q psy15670 183 REWHHWLMGNIKGGN-LEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHGRANFSIAKFAKKYKL 261 (420)
Q Consensus 183 ~~~lHWLv~NIp~~~-l~~G~~i~~Y~gP~Pp~gtG~HRYvFlLf~Q~~~l~~~~~~l~~~s~~~R~~Fnl~~F~~~~~L 261 (420)
++|+||++.||+++. ...|+++++|+||.|+ +|+|||+|+||+|++.+++.. ..+|.+||+++|+++++|
T Consensus 83 ~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp--~G~HRYvflly~Q~~~~~~~~-------~~~R~~F~~~~Fa~~~~L 153 (175)
T PLN00169 83 REYLHWLVTDIPATTGATFGQEVVCYESPRPT--AGIHRFVFVLFRQLGRQTVYA-------PGWRQNFNTRDFAELYNL 153 (175)
T ss_pred ccEEEEEEeCCccccccccCccceeecCCCCC--CCceeEEEEEEEcCCCcccCC-------cccCCCcCHHHHHHHhCC
Confidence 999999999999874 3578999999999998 479999999999998764322 257999999999999999
Q ss_pred CCcceeeeeeccccCCchhh
Q psy15670 262 GDPIAVNYFLAEFDDYVPKL 281 (420)
Q Consensus 262 ~~pVAgnfF~aq~Dd~Vp~v 281 (420)
++|||||||++||++.++..
T Consensus 154 ~~PvA~nfF~a~~~~~~~~~ 173 (175)
T PLN00169 154 GSPVAAVYFNCQRESGSGGR 173 (175)
T ss_pred CCceEEEEEEEecCCcCCcc
Confidence 99999999999999987754
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=7.4e-35 Score=262.08 Aligned_cols=146 Identities=47% Similarity=0.804 Sum_probs=131.6
Q ss_pred eEEEEeCCCcccCCCceeCccccccCCeEEEecCC--CCeEEEEEEcCCCCCCCCCCCcceeeEEEeecCCCc-----cC
Q psy15670 127 ICKVEYPGNVSVNLGNTLTPTQVKEQPHVSWSANP--KDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGGN-----LE 199 (420)
Q Consensus 127 ~L~V~Y~~~~~V~~G~~L~p~~t~~~P~v~~~~~~--~~~YTLvMvDPDaP~~~~p~~~~~lHWLv~NIp~~~-----l~ 199 (420)
.|+|+|+++..+.+|+.|++++++.+|+|+|.... ++.|||+|+|||+|.+.++.++++||||++||+++. ..
T Consensus 2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~~ 81 (154)
T cd00866 2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLVS 81 (154)
T ss_pred eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCCCCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCccccccccC
Confidence 68999976689999999999999999999999765 799999999999999999999999999999999875 45
Q ss_pred CCcccccCcCCCCCCCCCCceEEEEEEeeCCCccCCccccCcCCcCCCcchhhHHHHHHhcCCCcceeeeeec
Q psy15670 200 GADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHGRANFSIAKFAKKYKLGDPIAVNYFLA 272 (420)
Q Consensus 200 ~G~~i~~Y~gP~Pp~gtG~HRYvFlLf~Q~~~l~~~~~~l~~~s~~~R~~Fnl~~F~~~~~L~~pVAgnfF~a 272 (420)
.|..+++|+||+|++|+|+|||+|+||+|++.+++............|.+||+++|++++||+.|||+|||++
T Consensus 82 ~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 82 KGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 6889999999999999999999999999998887665433234568999999999999999998999999985
No 4
>KOG3346|consensus
Probab=99.95 E-value=1.3e-28 Score=227.62 Aligned_cols=110 Identities=50% Similarity=0.923 Sum_probs=101.0
Q ss_pred ccccCCCCceeeeeCCcCCCCCCCCcCeEEEec--CCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCccee
Q psy15670 286 FGSVEYPDGVQVYLGNKLTPTQVKVEPNVTWSA--NPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWH 363 (420)
Q Consensus 286 ~~~v~y~~~~~V~~G~~l~~~~t~~~P~l~~~~--~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~ 363 (420)
...|.|+++..|++|+.|+++++...|.|+|++ .++++|||+ |+|||||++++|.+++||
T Consensus 26 ~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLv------------------m~DPDaPsr~~p~~rE~l 87 (185)
T KOG3346|consen 26 KLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLV------------------MTDPDAPSRSDPKFREWL 87 (185)
T ss_pred EEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEE------------------EeCCCCCCCCCCcceeEE
Confidence 456889888999999999999999999999995 455566555 999999999999999999
Q ss_pred EEEEeccCCCC-CcCCcccccccCCCCCCCCCCceEEEEEEeeCCCCCCCc
Q psy15670 364 HWLMGNIKGGD-LEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPKFIVFTE 413 (420)
Q Consensus 364 HWl~~nIp~~~-l~~g~~~~~Y~~P~Pp~gtg~HRYvFll~~q~~~l~~~~ 413 (420)
|||++|||+++ +..|++++.|+||.||+|+|.|||+|+||+|+.++++.+
T Consensus 88 HWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~ 138 (185)
T KOG3346|consen 88 HWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDE 138 (185)
T ss_pred EEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCcccccc
Confidence 99999999998 999999999999999999999999999999999888765
No 5
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.94 E-value=1.6e-26 Score=205.99 Aligned_cols=131 Identities=38% Similarity=0.700 Sum_probs=108.4
Q ss_pred eeEEEEeCCCcccCCCceeCccc-cccCCeEEEecCCCCeEEEEEEcCCCCCCCCCCCcceeeEEEeecC---------C
Q psy15670 126 EICKVEYPGNVSVNLGNTLTPTQ-VKEQPHVSWSANPKDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIK---------G 195 (420)
Q Consensus 126 ~~L~V~Y~~~~~V~~G~~L~p~~-t~~~P~v~~~~~~~~~YTLvMvDPDaP~~~~p~~~~~lHWLv~NIp---------~ 195 (420)
..|.|+|.++..+.+|+.++++. ++..|+ ..++|||+|+|||+|++.+++.++++|||++||+ .
T Consensus 2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~------~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~~~~ 75 (146)
T PF01161_consen 2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT------GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEGSDG 75 (146)
T ss_dssp CEEEEEECTTEECSTTEEEEGGGECSS-TC------TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TTSST
T ss_pred cCcCceeEcccccCCCCCCCcCcccccCCC------CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCCCCc
Confidence 57999997678999999999988 888888 6789999999999999999999999999999999 1
Q ss_pred --Ccc-CCCcccccCcCCCCCCCCCCceEEEEEEeeCCCccCCccccCcCCcCCCcchhhHHHHHHhcCCCc-ceeeeee
Q psy15670 196 --GNL-EGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHGRANFSIAKFAKKYKLGDP-IAVNYFL 271 (420)
Q Consensus 196 --~~l-~~G~~i~~Y~gP~Pp~gtG~HRYvFlLf~Q~~~l~~~~~~l~~~s~~~R~~Fnl~~F~~~~~L~~p-VAgnfF~ 271 (420)
..+ +.|+.+++|.||+|++|+|.|||+|+||+|++.+.++ .....++++++.++++|+.+ ++|+|||
T Consensus 76 ~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l~---------~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 76 ARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPLS---------DGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp CETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTSG---------BSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred cEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCCC---------CCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 112 2366789999999999999999999999999855442 23445788888899999988 9999997
No 6
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=99.88 E-value=7.1e-23 Score=184.22 Aligned_cols=112 Identities=45% Similarity=0.838 Sum_probs=97.0
Q ss_pred ccCCCCceeeeeCCcCCCCCCCCcCeEEEecCCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCcceeEEEE
Q psy15670 288 SVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLM 367 (420)
Q Consensus 288 ~v~y~~~~~V~~G~~l~~~~t~~~P~l~~~~~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~HWl~ 367 (420)
.|.|++...|.+|+.++++++..+|.|+|+...++ ++.|||+|+|||+|.+.++.+++|||||+
T Consensus 4 ~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~~----------------~~~y~lvm~DpD~p~~~~~~~~~~lHwl~ 67 (154)
T cd00866 4 TVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPP----------------DKLYTLVMVDPDAPSRDDPKFREWLHWLV 67 (154)
T ss_pred EEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCCC----------------CCeEEEEEECCCCCCCCCCCCCCEEEEEE
Confidence 46786657899999999999999999999987632 34455559999999999999999999999
Q ss_pred eccCCCC-----CcCCcccccccCCCCCCCCCCceEEEEEEeeCCCCCCCchh
Q psy15670 368 GNIKGGD-----LEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPKFIVFTEHR 415 (420)
Q Consensus 368 ~nIp~~~-----l~~g~~~~~Y~~P~Pp~gtg~HRYvFll~~q~~~l~~~~~~ 415 (420)
+||+.+. ...|..+++|+||+|++|+|+|||+|+||+|++.+.+....
T Consensus 68 ~ni~~~~~~~~~~~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~ 120 (154)
T cd00866 68 TNIPGSDTTTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESK 120 (154)
T ss_pred eCcCCccccccccCCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccc
Confidence 9999886 44678899999999999999999999999999988877654
No 7
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.88 E-value=3.9e-22 Score=181.51 Aligned_cols=123 Identities=36% Similarity=0.532 Sum_probs=99.5
Q ss_pred ccCC-CceeCc----cccccCCeEEEecCC--CCeEEEEEEcCCCCCCCCCCCcceeeEEEeecCCCcc--C--------
Q psy15670 137 SVNL-GNTLTP----TQVKEQPHVSWSANP--KDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGGNL--E-------- 199 (420)
Q Consensus 137 ~V~~-G~~L~p----~~t~~~P~v~~~~~~--~~~YTLvMvDPDaP~~~~p~~~~~lHWLv~NIp~~~l--~-------- 199 (420)
.+.. |+.|+. ......|.|+|++.+ .+.|+|+|+|||+|.. ++|+||+++|||.+.. .
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~ali~~DpDap~~-----~~~~HWvv~nIp~~~~~~~~~~~~~~~ 80 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVMEDPDAPLG-----RPIVHGLVYGIPANKTSLSNDDFVVTD 80 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCCCeEEEEEEECCCCCCC-----CCceEEEEeccCcccccccccccccCC
Confidence 4555 888887 777779999999765 5899999999999843 6899999999997641 1
Q ss_pred ---CCc----------ccccCcCCCCCCCCCCceEEEEEEeeCCCccCCccccCcCCcCCCcchhhHHHHHHhcCCCcce
Q psy15670 200 ---GAD----------HLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHGRANFSIAKFAKKYKLGDPIA 266 (420)
Q Consensus 200 ---~G~----------~i~~Y~gP~Pp~gtG~HRYvFlLf~Q~~~l~~~~~~l~~~s~~~R~~Fnl~~F~~~~~L~~pVA 266 (420)
.+. ....|.||+||+|+|.|||+|+||+|+..+.+... ...|..|++.+|++++.|+ ++|
T Consensus 81 ~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~~------~~~~~~~~~~~~~~~~vL~-~~a 153 (159)
T cd00457 81 NGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSKL------GDGRTKFEVARFAEGNVLG-AVG 153 (159)
T ss_pred CCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCccccccc------cCCCCHHHHHHHHHhCeee-EEE
Confidence 111 13499999999999999999999999977654321 2578899999999999996 789
Q ss_pred eeeee
Q psy15670 267 VNYFL 271 (420)
Q Consensus 267 gnfF~ 271 (420)
+++|.
T Consensus 154 ~~~~~ 158 (159)
T cd00457 154 EWVGQ 158 (159)
T ss_pred EEEEE
Confidence 98876
No 8
>PLN00169 CETS family protein; Provisional
Probab=99.86 E-value=7.4e-22 Score=182.33 Aligned_cols=107 Identities=29% Similarity=0.505 Sum_probs=90.2
Q ss_pred ccccCCCCceeeeeCCcCCCCCCCCcCeEEEecCCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCcceeEE
Q psy15670 286 FGSVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHW 365 (420)
Q Consensus 286 ~~~v~y~~~~~V~~G~~l~~~~t~~~P~l~~~~~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~HW 365 (420)
...|.|. +..|.+|+.|+++++...|.|+|++... .+.|||+|+|||+|.+.++.+++|+||
T Consensus 27 ~L~V~y~-s~~V~~G~~l~p~~t~~~P~i~~~~~~~-----------------~~~ytlim~DpDaP~~~~~~~~~~~HW 88 (175)
T PLN00169 27 SLRVTYG-SREVNNGCELKPSQVVNQPRVDIGGEDL-----------------RTFYTLVMVDPDAPSPSNPNLREYLHW 88 (175)
T ss_pred EEEEEEC-CcCcCCcCCCCHHHhccCCEEEEccCCC-----------------CceeEEEEECCCCCCCCCCCcccEEEE
Confidence 4457785 4789999999999999999999975432 234555599999999999999999999
Q ss_pred EEeccCCCC-CcCCcccccccCCCCCCCCCCceEEEEEEeeCCCCCCC
Q psy15670 366 LMGNIKGGD-LEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPKFIVFT 412 (420)
Q Consensus 366 l~~nIp~~~-l~~g~~~~~Y~~P~Pp~gtg~HRYvFll~~q~~~l~~~ 412 (420)
+++||+++. ...|+++++|+||.|+ +|+|||+|+||+|++.+++.
T Consensus 89 ~v~nip~~~~~~~g~~~~~Y~~P~Pp--~G~HRYvflly~Q~~~~~~~ 134 (175)
T PLN00169 89 LVTDIPATTGATFGQEVVCYESPRPT--AGIHRFVFVLFRQLGRQTVY 134 (175)
T ss_pred EEeCCccccccccCccceeecCCCCC--CCceeEEEEEEEcCCCcccC
Confidence 999999875 3578889999999998 46899999999999877643
No 9
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.77 E-value=1.3e-18 Score=158.41 Aligned_cols=92 Identities=33% Similarity=0.490 Sum_probs=73.7
Q ss_pred CCcCCC----CCCCCcCeEEEecCCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCcceeEEEEeccCCCC-
Q psy15670 300 GNKLTP----TQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGGD- 374 (420)
Q Consensus 300 G~~l~~----~~t~~~P~l~~~~~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~HWl~~nIp~~~- 374 (420)
|+.|+. .+.+.+|.|+|+..++++.+++| +|+|||+|. .++|+||+++|||++.
T Consensus 11 g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~al----------------i~~DpDap~-----~~~~~HWvv~nIp~~~~ 69 (159)
T cd00457 11 GSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVL----------------VMEDPDAPL-----GRPIVHGLVYGIPANKT 69 (159)
T ss_pred CCccChhhccCCCCcCCceEecCCCCCCeEEEE----------------EEECCCCCC-----CCCceEEEEeccCcccc
Confidence 555555 99999999999998877666664 499999993 3479999999999874
Q ss_pred -CcC-----------Cc----------ccccccCCCCCCCCCCceEEEEEEeeCCCCCCC
Q psy15670 375 -LEE-----------AD----------HLSRYIGAGPPKNTGLHRYVFLVYKQPKFIVFT 412 (420)
Q Consensus 375 -l~~-----------g~----------~~~~Y~~P~Pp~gtg~HRYvFll~~q~~~l~~~ 412 (420)
+.+ +. ....|.||+||+|+|.|||+|+||+|+..+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~ 129 (159)
T cd00457 70 SLSNDDFVVTDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRS 129 (159)
T ss_pred cccccccccCCCCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCccccc
Confidence 221 11 234899999999999999999999999887754
No 10
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.77 E-value=3e-19 Score=159.13 Aligned_cols=103 Identities=36% Similarity=0.765 Sum_probs=72.5
Q ss_pred cCCCCceeeeeCCcCCCCCCCCcCeEEEecCCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCcceeEEEEe
Q psy15670 289 VEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMG 368 (420)
Q Consensus 289 v~y~~~~~V~~G~~l~~~~t~~~P~l~~~~~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~HWl~~ 368 (420)
|.|.++..+..|+.+.+.. +|...|.+. +.|+|+|+|||+|.+.++..++++|||++
T Consensus 6 v~f~~~~~~~~G~~~sp~~-------~~~~~P~~~----------------~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ 62 (146)
T PF01161_consen 6 VKFTGNKSVCPGNNVSPPL-------SWQNAPTGT----------------KSYTLIMVDPDAPSRENPSFGPFLHWLVT 62 (146)
T ss_dssp EEECTTEECSTTEEEEGGG-------ECSS-TCTT----------------SEEEEEEEETTSSBTTSCTTTSEEEEEEE
T ss_pred ceeEcccccCCCCCCCcCc-------ccccCCCCC----------------cEEEEEEECCCCCccccCCCCcEEEEEEc
Confidence 5564346777777775554 444433332 23334499999999888899999999999
Q ss_pred ccC---------C--CCCc-CCcccccccCCCCCCCCCCceEEEEEEeeCCCCCCCch
Q psy15670 369 NIK---------G--GDLE-EADHLSRYIGAGPPKNTGLHRYVFLVYKQPKFIVFTEH 414 (420)
Q Consensus 369 nIp---------~--~~l~-~g~~~~~Y~~P~Pp~gtg~HRYvFll~~q~~~l~~~~~ 414 (420)
||+ . ..++ .|+.+++|.||+|++|+|.|||+|+||+|++.++++..
T Consensus 63 ni~~~~~~~~~~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l~~~ 120 (146)
T PF01161_consen 63 NIPSTELPEGSDGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPLSDG 120 (146)
T ss_dssp EEETSEE-TTSSTCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTSGBS
T ss_pred CCCCccCCCCCCccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCCCCC
Confidence 999 1 0122 25567999999999999999999999999997666443
No 11
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.69 E-value=8.1e-17 Score=149.77 Aligned_cols=92 Identities=29% Similarity=0.527 Sum_probs=76.1
Q ss_pred CCCCCCCCcCeEEEecCCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCcceeEEEEeccCCCC--CcC---
Q psy15670 303 LTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGGD--LEE--- 377 (420)
Q Consensus 303 l~~~~t~~~P~l~~~~~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~HWl~~nIp~~~--l~~--- 377 (420)
.+|.+.+.+|.|+|+..|+++.+++|+ |+|||+|... .|+||+++|||++. |.+
T Consensus 44 ~~~~G~n~SP~L~W~~~P~gtks~aLi----------------~~DpDaP~g~-----~~~HWvv~nIP~~~~~l~eg~~ 102 (183)
T PRK09818 44 FGCEGGNTSPSLTWSGAPEGTKSFAVT----------------VYDPDAPTGS-----GWWHWTVANIPATVTYLPADAG 102 (183)
T ss_pred cCCCCCCcceeEEEccCCCCcEEEEEE----------------EECCCCCCCC-----cEEEEEEEcCCCCccccCCCCc
Confidence 457888999999999999999888855 9999998653 59999999999762 322
Q ss_pred ---------Cc-------ccccccCCCCCCCCCCceEEEEEEeeC-CCCCCCchh
Q psy15670 378 ---------AD-------HLSRYIGAGPPKNTGLHRYVFLVYKQP-KFIVFTEHR 415 (420)
Q Consensus 378 ---------g~-------~~~~Y~~P~Pp~gtg~HRYvFll~~q~-~~l~~~~~~ 415 (420)
|. ....|.||+||+|+|.|||+|.||+++ +.+++++..
T Consensus 103 ~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~~~~ 157 (183)
T PRK09818 103 RRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVDSNS 157 (183)
T ss_pred ccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCCCCCC
Confidence 21 245899999999999999999999999 668887743
No 12
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=144.77 Aligned_cols=92 Identities=28% Similarity=0.504 Sum_probs=75.1
Q ss_pred CCCCCCCcCeEEEecCCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCcceeEEEEeccCCCC--CcC----
Q psy15670 304 TPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGGD--LEE---- 377 (420)
Q Consensus 304 ~~~~t~~~P~l~~~~~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~HWl~~nIp~~~--l~~---- 377 (420)
+|.+.+.+|.|+|+..|+++.+++|+ |+|||+|... .|+||+++|||++. |.+
T Consensus 24 ~~~G~n~SP~L~w~~~P~~t~s~ali----------------~~DpDap~~~-----~~~HWvv~nIP~~~~~l~eg~~~ 82 (158)
T PRK10257 24 GYDGDNISPHLAWDDVPAGTKSFVVT----------------CYDPDAPTGS-----GWWHWVVVNLPADTRVLPQGFGS 82 (158)
T ss_pred CCCCCCCCceEEEcCCCCCceEEEEE----------------EECCCCCCCC-----cEEEEEEEcCCCCcccccCCCCc
Confidence 35678899999999999999888865 9999998643 59999999999862 322
Q ss_pred -------Cc-------ccccccCCCCCCCCCCceEEEEEEeeC-CCCCCCchhhc
Q psy15670 378 -------AD-------HLSRYIGAGPPKNTGLHRYVFLVYKQP-KFIVFTEHRLL 417 (420)
Q Consensus 378 -------g~-------~~~~Y~~P~Pp~gtg~HRYvFll~~q~-~~l~~~~~~~~ 417 (420)
|. ....|.||+||+|+ .|||+|.||+|+ ..+++++..-.
T Consensus 83 ~~~~~p~g~~~g~n~~g~~gY~GP~PP~g~-~HrY~f~vyALd~~~L~l~~~~~~ 136 (158)
T PRK10257 83 GLVALPDGVLQTRTDFGKAGYGGAAPPKGE-THRYIFTVHALDVERIDVDEGASG 136 (158)
T ss_pred ccccCCCCceeccccCCCccCcCCCCccCC-CceEEEEEEEecCcccCCCCCCCH
Confidence 21 24689999999997 699999999999 57998876543
No 13
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.68 E-value=1.1e-16 Score=144.37 Aligned_cols=92 Identities=36% Similarity=0.587 Sum_probs=75.8
Q ss_pred CCCCCCCcCeEEEecCCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCcceeEEEEeccCCC--CCcCCc--
Q psy15670 304 TPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGG--DLEEAD-- 379 (420)
Q Consensus 304 ~~~~t~~~P~l~~~~~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~HWl~~nIp~~--~l~~g~-- 379 (420)
+|.+.+.+|.|+|+..++++.+++|+ |+|||+|. ..+|+||+++|||.+ .|.+|.
T Consensus 20 ~~~g~~~SP~l~w~~~p~~t~s~al~----------------m~D~Dap~-----~~~~~HW~~~nIp~~~~~i~~g~~~ 78 (150)
T cd00865 20 TCDGENVSPPLSWSGVPAGTKSLALI----------------VEDPDAPT-----GGGFVHWVVWNIPADTTELPEGASR 78 (150)
T ss_pred cCCCCCcCCCeEEcCCCCCCeEEEEE----------------EEcCCCCC-----CCCEEEEEEeccCcccccccCCccc
Confidence 56778999999999999887777744 99999993 246999999999986 344432
Q ss_pred --------------ccccccCCCCCCCCCCceEEEEEEeeCCCCCCCchhhc
Q psy15670 380 --------------HLSRYIGAGPPKNTGLHRYVFLVYKQPKFIVFTEHRLL 417 (420)
Q Consensus 380 --------------~~~~Y~~P~Pp~gtg~HRYvFll~~q~~~l~~~~~~~~ 417 (420)
....|.||+||+ ++.|||+|.||+|+..+.+++....
T Consensus 79 ~~~~~~~~~g~n~~~~~~Y~gP~Pp~-~~~HrY~f~vyAld~~l~~~~~~~~ 129 (150)
T cd00865 79 GALPAGAVQGRNDFGEAGYGGPCPPD-GGPHRYVFTVYALDVPLLLPPGATR 129 (150)
T ss_pred ccCCCCCeEeecCCCCCeecCCCCcC-CCceEEEEEEEEeCCccCCCCCCCH
Confidence 467999999999 7899999999999998888665443
No 14
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.67 E-value=1.7e-16 Score=146.38 Aligned_cols=90 Identities=33% Similarity=0.679 Sum_probs=73.0
Q ss_pred cCCCCCCCCcCeEEEecCCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCcceeEEEEeccCCC--CCcCC-
Q psy15670 302 KLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGG--DLEEA- 378 (420)
Q Consensus 302 ~l~~~~t~~~P~l~~~~~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~HWl~~nIp~~--~l~~g- 378 (420)
+.++.+.+.+|.|+|+..|.++.||+|+ |+|||||... .|+||+++|||++ .+.+|
T Consensus 39 ~~t~~g~~~sPpl~ws~~P~~tkS~AL~----------------v~DpDAP~g~-----~~~HWvv~nIp~~~~~~~~~~ 97 (174)
T COG1881 39 EYTCGGPNISPPLSWSGVPEGTKSFALT----------------VDDPDAPTGG-----GWVHWVVANIPADVTELPEGS 97 (174)
T ss_pred hhhcCCCCcCCceeecCCCCCCeeEEEE----------------EECCCCCCCC-----cEEEEEEEccCCccccccccc
Confidence 3457889999999999999999999966 9999999743 5999999999984 23222
Q ss_pred --------------cccccccCCCCCCCCCCceEEEEEEeeCC-CCCCCc
Q psy15670 379 --------------DHLSRYIGAGPPKNTGLHRYVFLVYKQPK-FIVFTE 413 (420)
Q Consensus 379 --------------~~~~~Y~~P~Pp~gtg~HRYvFll~~q~~-~l~~~~ 413 (420)
-.-..|.|||||+|+| |||+|.||+++. .+.+++
T Consensus 98 ~~~~~~~~~qg~Nd~g~~~Y~Gp~PP~g~~-HrY~f~vyALd~~~~~~~~ 146 (174)
T COG1881 98 GPKSKIGIVQGINDFGSRGYGGPCPPKGHG-HRYYFTVYALDVELLLLPA 146 (174)
T ss_pred ccccccceEEeeccccccCcccCCCCCCCC-eEEEEEEEEcccccccCCC
Confidence 1235699999999999 999999999996 444433
No 15
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.65 E-value=4.9e-16 Score=139.05 Aligned_cols=91 Identities=34% Similarity=0.587 Sum_probs=73.9
Q ss_pred CCCCCCcCeEEEecCCCCceEEEEecCCCCCCcccCCCCceeECCCCCCCCCCCCcceeEEEEeccCCC--CCcC-----
Q psy15670 305 PTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGG--DLEE----- 377 (420)
Q Consensus 305 ~~~t~~~P~l~~~~~~~~~~sl~~~~~~~~~~~~~~~ytl~mvDpDap~~~~~~~~~~~HWl~~nIp~~--~l~~----- 377 (420)
|.+.+.+|.|+|+..++++.+++|+ |+|||+|...+ |+||+++|||++ .|.+
T Consensus 9 ~~G~n~SP~l~w~~~P~~t~s~al~----------------~~D~Dap~~~~-----~~HWv~~nIp~~~~~l~e~~~~~ 67 (141)
T TIGR00481 9 CDGPNISPPLSWDGVPEGAKSLALT----------------CIDPDAPTGCG-----WWHWVVVNIPADTTVLPENASSD 67 (141)
T ss_pred CCCCCCCcEEEEcCCCCCceEEEEE----------------EECCCCCCCCC-----eEEEEEecCCCCcccccCCcccc
Confidence 6778899999999999888777755 99999997653 999999999985 2322
Q ss_pred ------Cc--------ccccccCCCCCCCCCCceEEEEEEeeCCC-CCCCchhhcc
Q psy15670 378 ------AD--------HLSRYIGAGPPKNTGLHRYVFLVYKQPKF-IVFTEHRLLD 418 (420)
Q Consensus 378 ------g~--------~~~~Y~~P~Pp~gtg~HRYvFll~~q~~~-l~~~~~~~~~ 418 (420)
|. ....|.||+||+|+ |||+|.||+++.. +++++..-++
T Consensus 68 ~~~~~~g~~~~g~n~~g~~~Y~GP~PP~g~--HrY~f~vyALd~~~l~l~~~~~~~ 121 (141)
T TIGR00481 68 DKRLPQGVPLQGRNDFGKSGYIGPCPPKGD--HRYLFTVYALDTEKLDLDPGFSLA 121 (141)
T ss_pred ccccCCcceeEeeccCCCccEeCCCCcCCC--EEEEEEEEEecCCCCCCCCCCCHH
Confidence 20 24689999999997 9999999999976 9888755443
No 16
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.59 E-value=9.2e-15 Score=133.15 Aligned_cols=96 Identities=30% Similarity=0.541 Sum_probs=72.0
Q ss_pred CCeEEEecCC--CCeEEEEEEcCCCCCCCCCCCcceeeEEEeecCCCc--cCC-----------Cc-------ccccCcC
Q psy15670 152 QPHVSWSANP--KDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGGN--LEG-----------AD-------HLSRYIG 209 (420)
Q Consensus 152 ~P~v~~~~~~--~~~YTLvMvDPDaP~~~~p~~~~~lHWLv~NIp~~~--l~~-----------G~-------~i~~Y~g 209 (420)
+|.++|++.+ .++|+|+|.|||+|.. .+|+||+++|||++. +.. |. ....|.|
T Consensus 31 SP~L~w~~~P~~t~s~ali~~DpDap~~-----~~~~HWvv~nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~g~~gY~G 105 (158)
T PRK10257 31 SPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYGG 105 (158)
T ss_pred CceEEEcCCCCCceEEEEEEECCCCCCC-----CcEEEEEEEcCCCCcccccCCCCcccccCCCCceeccccCCCccCcC
Confidence 7999999876 4899999999999975 479999999999752 211 21 1468999
Q ss_pred CCCCCCCCCceEEEEEEeeC-CCccCCccccCcCCcCCCcchhhHHHHHHhcCC
Q psy15670 210 AGPPKQTGPHRYAFLVYKQP-NYTVFDEPRLMHNSIHGRANFSIAKFAKKYKLG 262 (420)
Q Consensus 210 P~Pp~gtG~HRYvFlLf~Q~-~~l~~~~~~l~~~s~~~R~~Fnl~~F~~~~~L~ 262 (420)
|+||.|. .|||+|.||+++ ..+++++. .. .=++.+-++.|-|+
T Consensus 106 P~PP~g~-~HrY~f~vyALd~~~L~l~~~-------~~--~~~l~~a~~ghvla 149 (158)
T PRK10257 106 AAPPKGE-THRYIFTVHALDVERIDVDEG-------AS--GAMVGFNVHFHSLA 149 (158)
T ss_pred CCCccCC-CceEEEEEEEecCcccCCCCC-------CC--HHHHHHHHhhceEE
Confidence 9999997 699999999998 46765432 11 22555566666664
No 17
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.59 E-value=4.7e-15 Score=138.01 Aligned_cols=79 Identities=33% Similarity=0.709 Sum_probs=64.0
Q ss_pred CCeEEEecCC--CCeEEEEEEcCCCCCCCCCCCcceeeEEEeecCCCc--cCC------------Cc-------ccccCc
Q psy15670 152 QPHVSWSANP--KDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGGN--LEG------------AD-------HLSRYI 208 (420)
Q Consensus 152 ~P~v~~~~~~--~~~YTLvMvDPDaP~~~~p~~~~~lHWLv~NIp~~~--l~~------------G~-------~i~~Y~ 208 (420)
+|.++|++.+ .++|+|+|.|||+|.. ..|+||+++|||++. +.+ |. ....|.
T Consensus 52 SP~L~W~~~P~gtks~aLi~~DpDaP~g-----~~~~HWvv~nIP~~~~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~ 126 (183)
T PRK09818 52 SPSLTWSGAPEGTKSFAVTVYDPDAPTG-----SGWWHWTVANIPATVTYLPADAGRRDGTKLPTGAVQGRNDFGYAGFG 126 (183)
T ss_pred ceeEEEccCCCCcEEEEEEEECCCCCCC-----CcEEEEEEEcCCCCccccCCCCcccccccCCCCCEEeecCCCCCceE
Confidence 8999999865 4899999999999875 479999999999752 211 21 146899
Q ss_pred CCCCCCCCCCceEEEEEEeeC-CCccCC
Q psy15670 209 GAGPPKQTGPHRYAFLVYKQP-NYTVFD 235 (420)
Q Consensus 209 gP~Pp~gtG~HRYvFlLf~Q~-~~l~~~ 235 (420)
||+||.|+|.|||+|.||+.+ ..+.++
T Consensus 127 GP~PP~G~g~HrY~F~vyALd~~~l~l~ 154 (183)
T PRK09818 127 GACPPKGDKPHHYQFKVWALKTDKIPVD 154 (183)
T ss_pred CCCCccCCCCEEEEEEEEEecCcccCCC
Confidence 999999999999999999998 445543
No 18
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.58 E-value=7.2e-15 Score=132.51 Aligned_cols=78 Identities=36% Similarity=0.673 Sum_probs=65.3
Q ss_pred cCCeEEEecCC--CCeEEEEEEcCCCCCCCCCCCcceeeEEEeecCCC--ccCCCc----------------ccccCcCC
Q psy15670 151 EQPHVSWSANP--KDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGG--NLEGAD----------------HLSRYIGA 210 (420)
Q Consensus 151 ~~P~v~~~~~~--~~~YTLvMvDPDaP~~~~p~~~~~lHWLv~NIp~~--~l~~G~----------------~i~~Y~gP 210 (420)
..|.|+|+..+ .++|+|+|+|||+|.. .+|+||+++|||.+ .+..|. ....|.||
T Consensus 26 ~SP~l~w~~~p~~t~s~al~m~D~Dap~~-----~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~gP 100 (150)
T cd00865 26 VSPPLSWSGVPAGTKSLALIVEDPDAPTG-----GGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGGP 100 (150)
T ss_pred cCCCeEEcCCCCCCeEEEEEEEcCCCCCC-----CCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCCCCeecCC
Confidence 48999999875 5899999999999933 68999999999986 333332 46899999
Q ss_pred CCCCCCCCceEEEEEEeeCCCccC
Q psy15670 211 GPPKQTGPHRYAFLVYKQPNYTVF 234 (420)
Q Consensus 211 ~Pp~gtG~HRYvFlLf~Q~~~l~~ 234 (420)
+||. .+.|||+|.||+++..+.+
T Consensus 101 ~Pp~-~~~HrY~f~vyAld~~l~~ 123 (150)
T cd00865 101 CPPD-GGPHRYVFTVYALDVPLLL 123 (150)
T ss_pred CCcC-CCceEEEEEEEEeCCccCC
Confidence 9999 8899999999999977654
No 19
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.55 E-value=2.4e-14 Score=132.24 Aligned_cols=97 Identities=33% Similarity=0.596 Sum_probs=71.8
Q ss_pred cCCeEEEecCC--CCeEEEEEEcCCCCCCCCCCCcceeeEEEeecCCC--ccCCC---------------cccccCcCCC
Q psy15670 151 EQPHVSWSANP--KDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGG--NLEGA---------------DHLSRYIGAG 211 (420)
Q Consensus 151 ~~P~v~~~~~~--~~~YTLvMvDPDaP~~~~p~~~~~lHWLv~NIp~~--~l~~G---------------~~i~~Y~gP~ 211 (420)
..|.++|++.| .++|+|+|.|||||.. ..|+||++.|||.+ .+..| ..-..|.||+
T Consensus 47 ~sPpl~ws~~P~~tkS~AL~v~DpDAP~g-----~~~~HWvv~nIp~~~~~~~~~~~~~~~~~~~qg~Nd~g~~~Y~Gp~ 121 (174)
T COG1881 47 ISPPLSWSGVPEGTKSFALTVDDPDAPTG-----GGWVHWVVANIPADVTELPEGSGPKSKIGIVQGINDFGSRGYGGPC 121 (174)
T ss_pred cCCceeecCCCCCCeeEEEEEECCCCCCC-----CcEEEEEEEccCCcccccccccccccccceEEeeccccccCcccCC
Confidence 37999999764 5899999999999974 69999999999973 22111 1235699999
Q ss_pred CCCCCCCceEEEEEEeeCCCc-cCCccccCcCCcCCCcchhhHHHHHHhcCC
Q psy15670 212 PPKQTGPHRYAFLVYKQPNYT-VFDEPRLMHNSIHGRANFSIAKFAKKYKLG 262 (420)
Q Consensus 212 Pp~gtG~HRYvFlLf~Q~~~l-~~~~~~l~~~s~~~R~~Fnl~~F~~~~~L~ 262 (420)
||+|+| |||.|.||+++-.. ..+ .+..+=.+.+-++.|.|+
T Consensus 122 PP~g~~-HrY~f~vyALd~~~~~~~---------~g~~~~~~~~~~~~hil~ 163 (174)
T COG1881 122 PPKGHG-HRYYFTVYALDVELLLLP---------AGASGAELGKAMEGHILA 163 (174)
T ss_pred CCCCCC-eEEEEEEEEcccccccCC---------CCCCHHHHHHHHHHHHHH
Confidence 999999 99999999998533 211 122233566777777775
No 20
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.47 E-value=1.6e-13 Score=122.94 Aligned_cols=77 Identities=39% Similarity=0.697 Sum_probs=61.6
Q ss_pred CCeEEEecCC--CCeEEEEEEcCCCCCCCCCCCcceeeEEEeecCCC--ccCC-----------Cc--------ccccCc
Q psy15670 152 QPHVSWSANP--KDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGG--NLEG-----------AD--------HLSRYI 208 (420)
Q Consensus 152 ~P~v~~~~~~--~~~YTLvMvDPDaP~~~~p~~~~~lHWLv~NIp~~--~l~~-----------G~--------~i~~Y~ 208 (420)
.|.|+|+..+ .++|+|+|+|||+|.. ..|+||+++|||++ .+.. |+ ....|.
T Consensus 15 SP~l~w~~~P~~t~s~al~~~D~Dap~~-----~~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~Y~ 89 (141)
T TIGR00481 15 SPPLSWDGVPEGAKSLALTCIDPDAPTG-----CGWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSGYI 89 (141)
T ss_pred CcEEEEcCCCCCceEEEEEEECCCCCCC-----CCeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCccEe
Confidence 8999999764 4899999999999975 24999999999974 1211 21 147999
Q ss_pred CCCCCCCCCCceEEEEEEeeCCC-ccCC
Q psy15670 209 GAGPPKQTGPHRYAFLVYKQPNY-TVFD 235 (420)
Q Consensus 209 gP~Pp~gtG~HRYvFlLf~Q~~~-l~~~ 235 (420)
||+||.|+ |||+|.||+++.. ++++
T Consensus 90 GP~PP~g~--HrY~f~vyALd~~~l~l~ 115 (141)
T TIGR00481 90 GPCPPKGD--HRYLFTVYALDTEKLDLD 115 (141)
T ss_pred CCCCcCCC--EEEEEEEEEecCCCCCCC
Confidence 99999987 9999999999865 6543
Done!