RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15670
(420 letters)
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical
shift variations, titration, unknown function; NMR
{Drosophila melanogaster}
Length = 179
Score = 181 bits (461), Expect = 6e-56
Identities = 76/163 (46%), Positives = 99/163 (60%), Gaps = 5/163 (3%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQPHVSWSANP--KDHYVLCMTDPDAPSRDYPIAREWH 186
KV Y ++ V GN LTPTQVK+QP VSWS + L M DPDAP+R P RE
Sbjct: 18 KVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPTRQDPKYREIL 77
Query: 187 HWLMGNIKGGN--LEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSI 244
HW + NI G N G L+ Y+G+GPPK TG HRY FL+Y+Q N + P + + +
Sbjct: 78 HWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIE-ETPTISNTTR 136
Query: 245 HGRANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
GR NF+ FA K+ LG+PIA NY+ A++DDYVP + + G
Sbjct: 137 TGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIRNKTIVG 179
Score = 107 bits (268), Expect = 1e-27
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 18/129 (13%)
Query: 288 SVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKE 347
V Y D ++V GN+LTPTQVK +P V+WS + +L ++
Sbjct: 18 KVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMV---------------- 61
Query: 348 DPDAPSRDNPTVKEWHHWLMGNIKGGD--LEEADHLSRYIGAGPPKNTGLHRYVFLVYKQ 405
DPDAP+R +P +E HW + NI G + L+ Y+G+GPPK+TGLHRY+FL+Y+Q
Sbjct: 62 DPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQ 121
Query: 406 PKFIVFTEH 414
I T
Sbjct: 122 ENKIEETPT 130
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase
inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A*
1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Length = 190
Score = 174 bits (442), Expect = 5e-53
Identities = 78/161 (48%), Positives = 100/161 (62%), Gaps = 2/161 (1%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQP-HVSWSA-NPKDHYVLCMTDPDAPSRDYPIAREWH 186
+V+Y G LG LTPTQV +P +SW +P Y L +TDPDAPSR P REWH
Sbjct: 29 RVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWH 88
Query: 187 HWLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHG 246
H+L+ N+KG ++ LS Y+G+GPPK TG HRY +LVY+Q DEP L + S
Sbjct: 89 HFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDN 148
Query: 247 RANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
R F + F KKY LG P+A F AE+DD VPKL+++L G
Sbjct: 149 RGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQLAG 189
Score = 97.4 bits (242), Expect = 6e-24
Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 18/133 (13%)
Query: 288 SVEYPDGVQVYLGNKLTPTQVKVEPN-VTWSANPKDNYVLAMIGSNPGCSLSEALLPIRK 346
V+Y LG LTPTQV P+ ++W ++
Sbjct: 29 RVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVL----------------- 71
Query: 347 EDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQP 406
DPDAPSR +P +EWHH+L+ N+KG D+ LS Y+G+GPPK+TGLHRYV+LVY+Q
Sbjct: 72 TDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQE 131
Query: 407 KFIVFTEHRLLDK 419
+ + E L +K
Sbjct: 132 QPLNCDEPILSNK 144
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI,
protein structure initiative; HET: MSE; 1.30A
{Plasmodium vivax} PDB: 2r77_A
Length = 200
Score = 152 bits (384), Expect = 3e-44
Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 14/159 (8%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQP-HVSWSANPKDH--YVLCMTDPDAPSRDYPIAREW 185
+ + VN GN L P ++ +S P + Y+L M DPD PSR P R++
Sbjct: 40 YISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMIDPDFPSRRRPDGRDY 99
Query: 186 HHWLMGNIKG-----GNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDE---P 237
HW + IK G + L Y+G K TG HR +F++ + P
Sbjct: 100 VHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVP 159
Query: 238 RLMHNSIHGRANFSIAKFAKKYKLG---DPIAVNYFLAE 273
R F+ + A + N+
Sbjct: 160 LYRGEHYITRVKFNNCQSAYNVIQMNDMKIVGFNWCQMR 198
Score = 117 bits (294), Expect = 3e-31
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 26/128 (20%)
Query: 288 SVEYPDGVQVYLGNKLTPTQVKVEP-NVTWSANPKDN--YVLAMIGSNPGCSLSEALLPI 344
+ + G +V GN L P N+ +S P ++ Y+L MI
Sbjct: 40 YISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMI--------------- 84
Query: 345 RKEDPDAPSRDNPTVKEWHHWLMGNIKG-----GDLEEADHLSRYIGAGPPKNTGLHRYV 399
DPD PSR P +++ HW + IK G + L Y+G K TGLHR
Sbjct: 85 ---DPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRIS 141
Query: 400 FLVYKQPK 407
F++ +
Sbjct: 142 FILSLVKE 149
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine
proteinase inhibitor, Pro inhibitor complex; HET: NAG
NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Length = 220
Score = 152 bits (385), Expect = 3e-44
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 38/182 (20%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQPHVSWS----------------ANPKDHYVLCMTDP 172
VEY + V +GNTL + + +P ++ D + L MTDP
Sbjct: 38 AVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMTDP 97
Query: 173 DAPSRDYPIAREWHHWLMGNIKG------------------GNLEGADHLSRYIGAGPPK 214
DAPS+ E+ H + ++K N +G++ L Y+G PPK
Sbjct: 98 DAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPK 157
Query: 215 QTGPHRYAFLVYKQP---NYTVFDEPRLMHNSIHGRANFSIAKFAKKYKLGDPIAVNYFL 271
+GPHRY FL+YKQP + + F + + N +G + K+AK+ L +A N+F
Sbjct: 158 GSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNLQ-LVASNFFY 216
Query: 272 AE 273
AE
Sbjct: 217 AE 218
Score = 108 bits (270), Expect = 1e-27
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 288 SVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKE 347
+VEY V +GN L + + +P ++ N + + +N + L +
Sbjct: 38 AVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQ--ANAYVPQDDDLFTLVMT 95
Query: 348 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEA------------------DHLSRYIGAGP 389
DPDAPS+ + E+ H + ++K + + L Y+G P
Sbjct: 96 DPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAP 155
Query: 390 PKNTGLHRYVFLVYKQPKFIVFTEHRLL 417
PK +G HRYVFL+YKQPK + ++ +
Sbjct: 156 PKGSGPHRYVFLLYKQPKGVDSSKFSKI 183
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein;
1.80A {Arabidopsis thaliana} PDB: 1qou_A
Length = 180
Score = 150 bits (380), Expect = 6e-44
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQPHVSWS-ANPKDHYVLCMTDPDAPSRDYPIAREWHH 187
V Y V+ G+ L P+ V +P V + + + L M DPD P P +E H
Sbjct: 35 NVSY-NKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHLH 93
Query: 188 WLMGNIKG-GNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHG 246
W++ NI G + + Y P G HR+ F++++Q + R++ +I
Sbjct: 94 WIVTNIPGTTDATFGKEVVSYEL--PRPSIGIHRFVFVLFRQK------QRRVIFPNIPS 145
Query: 247 RANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPK 280
R +F+ KFA +Y LG P+A +F A+ + K
Sbjct: 146 RDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARK 179
Score = 88.1 bits (218), Expect = 9e-21
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 21/121 (17%)
Query: 288 SVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKE 347
+V Y QV G++L P+ V +P V ++ ++
Sbjct: 35 NVSYN-KKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVM-----------------I 76
Query: 348 DPDAPSRDNPTVKEWHHWLMGNIKG-GDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQP 406
DPD P +P +KE HW++ NI G D + Y P + G+HR+VF++++Q
Sbjct: 77 DPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYEL--PRPSIGIHRFVFVLFRQK 134
Query: 407 K 407
+
Sbjct: 135 Q 135
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein,
14-3-3 protein, BZ protein, floral induction; HET: SEP;
2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Length = 170
Score = 133 bits (336), Expect = 1e-37
Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQPHVSWSAN-PKDHYVLCMTDPDAPSRDYPIAREWHH 187
KV Y G+ +V+ G L P+ V QP V N + Y L M DPDAPS P RE+ H
Sbjct: 31 KVTY-GSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPSDPNLREYLH 89
Query: 188 WLMGNIK-GGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHG 246
WL+ +I + Y P G HR F++++Q P
Sbjct: 90 WLVTDIPGTTAASFGQEVMSYESPRPT--MGIHRLVFVLFQQLGRQTVYAPG-------W 140
Query: 247 RANFSIAKFAKKYKLGDPIAVNYFLAEFD 275
R NF+ FA+ Y LG P+A YF ++ +
Sbjct: 141 RQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
Score = 84.6 bits (209), Expect = 2e-19
Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 21/139 (15%)
Query: 276 DYVPKLYEKLFGSVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGC 335
D + V Y V G +L P+ V +P V N + ++
Sbjct: 19 DVLDAFVRSTNLKVTYGSK-TVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVM------ 71
Query: 336 SLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGGDL-EEADHLSRYIGAGPPKNTG 394
DPDAPS +P ++E+ HWL+ +I G + Y P G
Sbjct: 72 -----------VDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPT--MG 118
Query: 395 LHRYVFLVYKQPKFIVFTE 413
+HR VF++++Q
Sbjct: 119 IHRLVFVLFQQLGRQTVYA 137
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta
protein, unknown function; 1.81A {Escherichia coli}
SCOP: b.17.1.2
Length = 166
Score = 58.6 bits (142), Expect = 1e-10
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 28/97 (28%)
Query: 153 PHVSWSANPKD--HYVLCMTDPDAPSRDYPIAREWHHWLMGNIK---------------- 194
P ++WS P+ + + + DPDAP+ W HW + NI
Sbjct: 34 PSLTWSGVPEGTKSFAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPVDAGRRDGT 88
Query: 195 ---GGNLEGA--DHLSRYIGAGPPKQTGPHRYAFLVY 226
G ++G + + GA PPK PH Y F V+
Sbjct: 89 KLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVW 125
Score = 49.0 bits (117), Expect = 3e-07
Identities = 19/78 (24%), Positives = 23/78 (29%), Gaps = 26/78 (33%)
Query: 347 EDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLS---------------------RYI 385
DPDAP+ W HW + NI +
Sbjct: 53 YDPDAPTGSG-----WWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFG 107
Query: 386 GAGPPKNTGLHRYVFLVY 403
GA PPK H Y F V+
Sbjct: 108 GACPPKGDKPHHYQFKVW 125
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic
homolog RAF kinase inhibitor protein (RKIP). csgid
structural genomics; 1.25A {Chlamydia trachomatis}
Length = 153
Score = 57.0 bits (138), Expect = 4e-10
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 153 PHVSWSANPKD--HYVLCMTDPDAPSRDYPIAREWHHWLMGNIKG-----------GNLE 199
P +S+S P++ VL + DPD P W HW++ N+ ++
Sbjct: 30 PPLSFSDVPREAKSLVLIVEDPDVPPSVRE-DGLWIHWIVYNLSPVVSNLAEGAQIFAVQ 88
Query: 200 GA--DHLSRYIGAGPPKQTGPHRYAFLVY 226
G Y PP HRY F Y
Sbjct: 89 GLNTAGEIGYCPPCPP--DAKHRYYFYAY 115
Score = 47.3 bits (113), Expect = 1e-06
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 16/70 (22%)
Query: 347 EDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLS-------------RYIGAGPPKNT 393
EDPD P W HW++ N+ A+ Y PP
Sbjct: 49 EDPDVPPSVREDG-LWIHWIVYNLSPVVSNLAEGAQIFAVQGLNTAGEIGYCPPCPP--D 105
Query: 394 GLHRYVFLVY 403
HRY F Y
Sbjct: 106 AKHRYYFYAY 115
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB
family, lipid binding protein; HET: MSE EPE; 1.66A
{Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Length = 159
Score = 48.0 bits (114), Expect = 7e-07
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 26/95 (27%)
Query: 153 PHVSWSANPKD--HYVLCMTDPDAPSRDYPIAREWHHWLMGNIK---------------- 194
PH++W P +V+ DPDAP+ W HW++ N+
Sbjct: 33 PHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVA 87
Query: 195 --GGNLEGA-DHLSRYIGAGPPKQTGPHRYAFLVY 226
G L+ D P + HRY F V+
Sbjct: 88 MPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVH 122
Score = 35.6 bits (82), Expect = 0.009
Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 26/77 (33%)
Query: 347 EDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLS--------------------RYIG 386
DPDAP+ W HW++ N+ Y G
Sbjct: 52 YDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDG 106
Query: 387 AGPPKNTGLHRYVFLVY 403
A PPK HRY+F V+
Sbjct: 107 AAPPKGET-HRYIFTVH 122
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer,
structural genomics, PSI, prote structure initiative;
HET: MSE; 2.59A {Helicobacter pylori}
Length = 207
Score = 46.1 bits (109), Expect = 5e-06
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 39/108 (36%)
Query: 153 PHVSWSANPK-DHYVLCMTDPDAPSRDYPIAREWHHWLMGNI------------KGGNLE 199
P +SW Y L + D DA + HW++GNI ++
Sbjct: 61 PKISWQKVEGAQSYALELIDHDAQK---VCGMPFVHWVVGNIAHNVLEENASMMDKRIVQ 117
Query: 200 GADHL---------------------SRYIGAGPPKQTGPHRYAFLVY 226
G + L S YIG PP G H Y VY
Sbjct: 118 GVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPN--GDHHYLIQVY 163
Score = 38.0 bits (88), Expect = 0.003
Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 38/90 (42%)
Query: 347 EDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLS------------------------ 382
D DA + HW++GNI LEE +
Sbjct: 79 IDHDAQK---VCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESE 135
Query: 383 ---------RYIGAGPPKNTGLHRYVFLVY 403
YIG PP G H Y+ VY
Sbjct: 136 KQRSNLNNSVYIGPMPPN--GDHHYLIQVY 163
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.012
Identities = 65/463 (14%), Positives = 117/463 (25%), Gaps = 173/463 (37%)
Query: 95 FELPPHHHEEQNV-----DKLLQDLKIN-----TGQALSSREICKVEYPGNVSVNLGNTL 144
FE H ++ +++ D + + LS EI + + + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-------IMSKDAV 61
Query: 145 TPTQVKEQPHVSWS--ANPKDHYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGGNLEGAD 202
+ T + W+ + ++ + + +Y +LM IK + +
Sbjct: 62 SGTLR-----LFWTLLSKQEEMVQKFVEEVLRI--NYK-------FLMSPIKTEQRQPSM 107
Query: 203 HLSRYIGAGPPKQTGPHRYA-FLVYKQPNYTVFDEP--RLMHNS---IHG---------- 246
YI +A + V + Y + L I G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 247 -----------RANFSI----------------------AKFAKKYKLGDPIAVNYFLAE 273
+ +F I + + + N L
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-R 226
Query: 274 FDDYVPKLYEKLFGSVEYP------DGVQVYLGNK------------LTPTQVKVEPNVT 315
+L +L S Y VQ N L T+ K VT
Sbjct: 227 IHSIQAEL-RRLLKSKPYENCLLVLLNVQ----NAKAWNAFNLSCKILLTTRFK---QVT 278
Query: 316 WSANPKDNYVLAMIGSNPGCSLSEAL-------------LP--IRKEDPDAPS------R 354
+ +++ + + E LP + +P S R
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 355 DNPTVKEWHHWLMGN-------IKGG--DLEEADHLSRY-----------IGAGPPK--- 391
D W +W N I+ LE A++ + I P
Sbjct: 339 DGLA--TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI---PTILLS 393
Query: 392 --------------NTGLHRYVFLVYKQPKFIVFTEHRLLDKL 420
LH+Y LV KQPK + + +L
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLEL 435
Score = 34.4 bits (78), Expect = 0.088
Identities = 49/334 (14%), Positives = 89/334 (26%), Gaps = 109/334 (32%)
Query: 60 EEQNVDKLLQDLKINTGQALSSREICKAHCTKGIRFELPPHH-HEEQNVDKLLQDLKINT 118
+ + +L+ L Q L + I ++ H Q + L K
Sbjct: 191 NCNSPETVLEML-----QKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 119 GQAL------SSREI-------CKV---------------EYPGNVSVN-LGNTLTPTQV 149
L + + CK+ ++S++ TLTP +V
Sbjct: 245 -NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 150 KEQ------------PHVSWSANPKDHYVLCM---TDPDAPSRDYPIAREWHHWLMGNIK 194
K P + NP L + + D + W +W N
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNP---RRLSIIAESIRDGLAT-------WDNWKHVNC- 352
Query: 195 GGNLEGADHLSRYIGAG----PPKQTGPHRYAFLVY----KQP--------NYTVFDEPR 238
D L+ I + P + V+ P + +
Sbjct: 353 -------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 239 LMHNSIHGRANFSIAKFAKKYKLGDP-IAVNYF-LAEFDDYVPKLYEKLFGSVEYPDGVQ 296
++ N +H + + K K+ + P I Y L + L+ + P
Sbjct: 406 VVVNKLHKYS--LVEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDHYNIPKT-- 458
Query: 297 VYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIG 330
+ + L P D Y + IG
Sbjct: 459 -FDSDDLIP-------------PYLDQYFYSHIG 478
Score = 34.1 bits (77), Expect = 0.097
Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 115/335 (34%)
Query: 33 LVETVLTFV------LLAHCTKGIRFELPPHHHEEQNVDKLLQDLKINTGQALSSREICK 86
L +T LL +LP + L N + LS I
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPR------------EVLTTNP-RRLS---IIA 334
Query: 87 AHCTKGI-RFELPPHHHEEQNVDKLLQDLKINTGQALSSREICKVEY------PGNVSVN 139
G+ ++ + + N DKL ++ + L E + + P + +
Sbjct: 335 ESIRDGLATWD----NWKHVNCDKLTTIIESSL-NVLEPAEY-RKMFDRLSVFPPSAHI- 387
Query: 140 LGNTLTPTQVKEQPHVSWSA---------------------NPKDHYV--------LCMT 170
PT + + W PK+ + L +
Sbjct: 388 ------PTILLS---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 171 DPDAPS------RDYPIAREWHHWLMGNIKGGNLEG------ADHLSRYIGAGPPKQTGP 218
+ + Y I + + ++ L+ HL P++
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHHLK---NIEHPERMTL 492
Query: 219 HRYAFLVYKQPNYTVFDEPRLMHNSIHGRANFSIA------KFAKKYKLGDPIAVNY--- 269
R FL ++ F E ++ H+S A+ SI KF K Y I N
Sbjct: 493 FRMVFLDFR------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-----ICDNDPKY 541
Query: 270 --FLAEFDDYVPKLYEKLFGSVEYPDGVQVYLGNK 302
+ D++PK+ E L S +Y D +++ L +
Sbjct: 542 ERLVNAILDFLPKIEENLICS-KYTDLLRIALMAE 575
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.23
Identities = 36/203 (17%), Positives = 60/203 (29%), Gaps = 60/203 (29%)
Query: 120 QALSSREICKVEYPGNVSVNLGNTLTPT-------QVKEQPHVSWSANPKDHYVLCMTDP 172
A S+R + + + G++ L L PT Q++EQ P + +
Sbjct: 2 DAYSTRPL-TLSH-GSLEHVL---LVPTASFFIASQLQEQ-FNKILPEPTEGF----AAD 51
Query: 173 DAPSRDYP-IAREWHHWLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNY 231
D P+ + + +G ++S + Q L
Sbjct: 52 DEPTTPAELVGK-----FLG-----------YVSSLVEPSKVGQFDQVLNLCLTE----- 90
Query: 232 TVFDEPRLMHNSIHGRA----NFSIAKFAKKYKLGDPIAVNYFLAEF--DDYVPKLYE-K 284
F+ L N IH A + K + + NY A K
Sbjct: 91 --FENCYLEGNDIHALAAKLLQENDTTLVKTKE----LIKNYITARIMAKRPFDKKSNSA 144
Query: 285 LFGSVEYPDG-VQVYL-----GN 301
LF +V +G Q+ GN
Sbjct: 145 LFRAVG--EGNAQLVAIFGGQGN 165
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.61
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 60 EEQNVDKLLQDLKI---NTGQALS 80
E+Q + KL LK+ ++ AL+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA 41
Score = 30.3 bits (67), Expect = 0.61
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 103 EEQNVDKLLQDLKI---NTGQALS 123
E+Q + KL LK+ ++ AL+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA 41
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A
{Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Length = 288
Score = 30.0 bits (67), Expect = 1.3
Identities = 14/120 (11%), Positives = 28/120 (23%), Gaps = 5/120 (4%)
Query: 254 KFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFGSVEYPDGVQVYLGNKLTPTQVKVEPN 313
+F + G+ +L E D V +Y G + + ++ P
Sbjct: 23 RFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAWDNAGFKGYGIQIEQ----IRILKSPQ 78
Query: 314 VTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEW-HHWLMGNIKG 372
N + + LL D + + + G
Sbjct: 79 EVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLG 138
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix,
8-oxoguanine, 8-OXOG, DNA damage, DNA repair,
glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB:
3knt_A*
Length = 214
Score = 29.7 bits (66), Expect = 1.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 357 PTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGP 389
K +L+ NIKG +EA H R +G
Sbjct: 117 ENEKVAREFLVRNIKGIGYKEASHFLRNVGYDD 149
Score = 28.1 bits (62), Expect = 4.3
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 173 DAPSRDYPIAREWHHWLMGNIKGGNLEGADHLSRYIGAGP 212
+ +ARE+ L+ NIKG + A H R +G
Sbjct: 113 VESFENEKVAREF---LVRNIKGIGYKEASHFLRNVGYDD 149
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 29.6 bits (67), Expect = 2.2
Identities = 9/17 (52%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 224 LVYKQ--PNYTVFDEPR 238
K PNY VFDE R
Sbjct: 124 TFAKHHLPNYGVFDEFR 140
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 29.1 bits (66), Expect = 2.7
Identities = 6/17 (35%), Positives = 6/17 (35%), Gaps = 2/17 (11%)
Query: 224 LVYKQ--PNYTVFDEPR 238
KQ N V E R
Sbjct: 110 FSAKQFLANEGVHYETR 126
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 29.4 bits (66), Expect = 2.8
Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 225 VYKQ--PNYTVFDEPR 238
KQ PN VFDE R
Sbjct: 131 YRKQDLPNTEVFDEKR 146
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 27.4 bits (61), Expect = 3.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 53 ELPPHHHEEQNVDKLLQDLKINTGQALSSRE 83
EL +E ++D L++ L N+ Q + +E
Sbjct: 41 ELCLGEMKESSIDDLMKSLDKNSDQEIDFKE 71
Score = 27.4 bits (61), Expect = 3.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 96 ELPPHHHEEQNVDKLLQDLKINTGQALSSRE 126
EL +E ++D L++ L N+ Q + +E
Sbjct: 41 ELCLGEMKESSIDDLMKSLDKNSDQEIDFKE 71
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA
repair, 8-oxoguanine, base EX repair, PSI-2, protein
structure initiative; 1.50A {Thermotoga maritima}
Length = 219
Score = 28.5 bits (63), Expect = 3.9
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 338 SEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPP 390
+E ++ RK + + +L+ N KG +EA H R G
Sbjct: 103 AEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGVEDL 155
>2v2f_F Penicillin binding protein 1A; transpeptidase activity,
peptidoglycan synthesis, transferase, hydrolase; HET:
MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B*
2zc5_B* 2c6w_B 2c5w_B*
Length = 390
Score = 27.8 bits (62), Expect = 8.5
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 17/78 (21%)
Query: 269 YFLAEFDDYVPKLYEKLFGSVEYPDGVQVYLGNKLTPTQVKVEPNVTWSA---------- 318
++ + V E+ G G+ VY N Q +
Sbjct: 7 AYMDNYLKEVINQVEQETGYNLLTTGMDVYT-NVDQEAQKHLWDIYNSDQYVSYPDDDLQ 65
Query: 319 ------NPKDNYVLAMIG 330
+ + V+A +G
Sbjct: 66 VASTVVDVSNGKVIAQLG 83
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase,
glutaminase, glutamine-dependent synthetase, ligase;
2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 27.8 bits (62), Expect = 8.9
Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 224 LVYKQ--PNYTVFDEPR 238
+V K P Y F E R
Sbjct: 119 VVPKSYLPTYREFYERR 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.435
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,884,644
Number of extensions: 415890
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 43
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)