RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15670
(420 letters)
>d1a44a_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein,
PEBP {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 193 bits (491), Expect = 8e-61
Identities = 82/161 (50%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQP-HVSWSA-NPKDHYVLCMTDPDAPSRDYPIAREWH 186
+V+Y G LG LTPTQVK +P ++W +P Y L +TDPDAPSR P REWH
Sbjct: 25 QVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREWH 84
Query: 187 HWLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSIHG 246
H+L+ N+KG N+ LS Y+G+GPPK TG HRY +LVY+Q DEP L + S
Sbjct: 85 HFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDH 144
Query: 247 RANFSIAKFAKKYKLGDPIAVNYFLAEFDDYVPKLYEKLFG 287
R F +A F KKY+LG P+A + AE+DDYVPKLYE+L G
Sbjct: 145 RGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLYEQLSG 185
Score = 113 bits (285), Expect = 1e-30
Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 20/134 (14%)
Query: 288 SVEYPDGVQVYLGNKLTPTQVKVEP-NVTWSANPKDN-YVLAMIGSNPGCSLSEALLPIR 345
V+Y LG LTPTQVK P ++TW Y L +
Sbjct: 25 QVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLT---------------- 68
Query: 346 KEDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQ 405
DPDAPSR +P +EWHH+L+ N+KG ++ LS Y+G+GPPK TGLHRYV+LVY+Q
Sbjct: 69 --DPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQ 126
Query: 406 PKFIVFTEHRLLDK 419
+ E L ++
Sbjct: 127 EGPLKCDEPILSNR 140
>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon
(Antirrhinum majus) [TaxId: 4151]}
Length = 164
Score = 142 bits (360), Expect = 1e-41
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Query: 129 KVEYPGNVS---VNLGNTLTPTQVKEQPHVSW-SANPKDHYVLCMTDPDAPSRDYPIARE 184
V Y N S V G+ L P+ V P V + + + L MTDPD P P RE
Sbjct: 18 SVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLRE 77
Query: 185 WHHWLMGNIKGGNLEGADHLSRYIGAGPPKQTGPHRYAFLVYKQPNYTVFDEPRLMHNSI 244
HW++ +I G + + P G HR+ FL++KQ ++ +
Sbjct: 78 HLHWIVTDIPGTT-DSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKK----RGQAMLSPPV 132
Query: 245 HGRANFSIAKFAKKYKLGDPIAVNYFLAE 273
R F+ KF ++ +LG P+A +F +
Sbjct: 133 VCRDGFNTRKFTQENELGLPVAAVFFNCQ 161
Score = 90.5 bits (224), Expect = 3e-22
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 276 DYVPKLYEKLFGSVEYPDG---VQVYLGNKLTPTQVKVEPNVTW-SANPKDNYVLAMIGS 331
D V + SV Y VY G++L P+ V P V + + + L M
Sbjct: 6 DVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMT-- 63
Query: 332 NPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPK 391
DPD P +P ++E HW++ +I G P
Sbjct: 64 ----------------DPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGK-EVVSYEMPRP 106
Query: 392 NTGLHRYVFLVYKQPK 407
N G+HR+VFL++KQ K
Sbjct: 107 NIGIHRFVFLLFKQKK 122
>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 219
Score = 144 bits (364), Expect = 1e-41
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 38/182 (20%)
Query: 129 KVEYPGNVSVNLGNTLTPTQVKEQPHVSWS----------------ANPKDHYVLCMTDP 172
VEY + V +GNTL + + +P ++ D + L MTDP
Sbjct: 37 AVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMTDP 96
Query: 173 DAPSRDYPIAREWHHWLMGNIK------------------GGNLEGADHLSRYIGAGPPK 214
DAPS+ E+ H + ++K N +G++ L Y+G PPK
Sbjct: 97 DAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPK 156
Query: 215 QTGPHRYAFLVYKQPN---YTVFDEPRLMHNSIHGRANFSIAKFAKKYKLGDPIAVNYFL 271
+GPHRY FL+YKQP + F + + N +G + K+AK+ L +A N+F
Sbjct: 157 GSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNLQ-LVASNFFY 215
Query: 272 AE 273
AE
Sbjct: 216 AE 217
Score = 101 bits (252), Expect = 2e-25
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 288 SVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKE 347
+VEY V +GN L + + +P ++ N + + +N + L +
Sbjct: 37 AVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQ--ANAYVPQDDDLFTLVMT 94
Query: 348 DPDAPSRDNPTVKEWHHWLMGNIK------------------GGDLEEADHLSRYIGAGP 389
DPDAPS+ + E+ H + ++K + + ++ L Y+G P
Sbjct: 95 DPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAP 154
Query: 390 PKNTGLHRYVFLVYKQPKFIVFTE 413
PK +G HRYVFL+YKQPK + ++
Sbjct: 155 PKGSGPHRYVFLLYKQPKGVDSSK 178
>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli
[TaxId: 562]}
Length = 165
Score = 58.2 bits (140), Expect = 8e-11
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 37/122 (30%)
Query: 137 SVNLGNTLTPTQVKEQ---------PHVSWSANPKD--HYVLCMTDPDAPSRDYPIAREW 185
+ G LT + V P ++WS P+ + + + DPDAP+ W
Sbjct: 8 EIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTG-----SGW 62
Query: 186 HHWLMGNIKG-------------------GNLEGADHL--SRYIGAGPPKQTGPHRYAFL 224
HW + NI G ++G + + + GA PPK PH Y F
Sbjct: 63 WHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFK 122
Query: 225 VY 226
V+
Sbjct: 123 VW 124
Score = 50.1 bits (119), Expect = 4e-08
Identities = 26/127 (20%), Positives = 37/127 (29%), Gaps = 42/127 (33%)
Query: 298 YLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNP 357
++ + P++TWS P+ A+ DPDAP+
Sbjct: 19 HVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVT----------------VYDPDAPTGSG- 61
Query: 358 TVKEWHHWLMGNIKGGDLEEADHLSR---------------------YIGAGPPKNTGLH 396
W HW + NI R + GA PPK H
Sbjct: 62 ----WWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPH 117
Query: 397 RYVFLVY 403
Y F V+
Sbjct: 118 HYQFKVW 124
>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 52.7 bits (126), Expect = 5e-09
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 28/96 (29%)
Query: 153 PHVSWSANPKD--HYVLCMTDPDAPSRDYPIAREWHHWLMGNIKGGNL---EGAD----- 202
PH++W P +V+ DPDAP+ W HW++ N+ +G
Sbjct: 33 PHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVA 87
Query: 203 ------------HLSRYIGAGPPKQTGPHRYAFLVY 226
+ Y GA PPK HRY F V+
Sbjct: 88 MPDGVLQTRTDFGKTGYDGAAPPK-GETHRYIFTVH 122
Score = 45.0 bits (106), Expect = 3e-06
Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 42/114 (36%)
Query: 310 VEPNVTWSANPKDNYVLAMIGSNPGCSLSEALLPIRKEDPDAPSRDNPTVKEWHHWLMGN 369
+ P++ W P + DPDAP+ W HW++ N
Sbjct: 31 ISPHLAWDDVPAGTKSFVVTC----------------YDPDAPTGSG-----WWHWVVVN 69
Query: 370 IKGGDLEEAD--------------------HLSRYIGAGPPKNTGLHRYVFLVY 403
+ + Y GA PPK HRY+F V+
Sbjct: 70 LPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKG-ETHRYIFTVH 122
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 30.3 bits (68), Expect = 0.54
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 46 CTKGIRFELPPHHHEEQNVDKLLQDLKINTGQALSSREICKA-----HCTKGIRFELPPH 100
+ + + K+ Q K G L ++ + H T G+ PP
Sbjct: 489 ASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPP 548
Query: 101 HHEEQNVDKLLQ 112
HH+ +++ L Q
Sbjct: 549 HHDIYSIEDLAQ 560
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme
[TaxId: 117187]}
Length = 349
Score = 27.1 bits (59), Expect = 4.4
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 287 GSVEYPDGVQVYLGNKLTPTQVKVEPNVTWSANPKDNYVLAMIGSN 332
+ P G Q+ L + + V + T++ +++ +I +
Sbjct: 24 NGFQVPTGKQLDLSSLQNDSTVTFKGTTTFATTADNDFNPIVISGS 69
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId:
294]}
Length = 404
Score = 27.0 bits (58), Expect = 4.5
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 76 GQALSSREICKAHCTKG-IRFELPPHHHEEQNVDKLLQDLKINTGQALSSRE 126
QAL R + + +RF P + V +Q L + L +
Sbjct: 355 IQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILG----EILDRKT 402
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 52 FELPPHHHEEQNVDKLLQDLKINTGQALSSREICKAHCTKG--IRFELPPHHHEEQNVDK 109
+P + V ++ I L + G +R L + +NVD+
Sbjct: 321 VAVPAGYDWRDIVSYVIDHFDIEIMGGL--------GPSTGKVLRIGLLGCNATRENVDR 372
Query: 110 LLQDLK 115
+ + L+
Sbjct: 373 VTEALR 378
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins
{Swine vesicular disease virus [TaxId: 12075]}
Length = 271
Score = 26.3 bits (58), Expect = 7.0
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 136 VSVNLGNTLTPTQVKEQPHVSWSANPKDHYVLCMTDPDAPSRDYPIAREWH-------HW 188
+L T T +EQP V P + + P P + W W
Sbjct: 100 ARFDLELTFVITSTQEQPTVRGQDAPVLTHQIMYVPPGGPVPTKVNSYSWQTSTNPSVFW 159
Query: 189 LMGN 192
G+
Sbjct: 160 TEGS 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.435
Gapped
Lambda K H
0.267 0.0409 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,706,081
Number of extensions: 82260
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 20
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)