BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15672
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 332 bits (852), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+ Q PH+A T
Sbjct: 94 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+ Q PH+A T
Sbjct: 97 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 156
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 157 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 216
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 217 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 276
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 277 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 336
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 337 ALQEYILMCCQCPAGGLLDKP 357
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+ Q PH+A T
Sbjct: 73 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 132
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 133 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 192
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 193 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 252
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 253 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 312
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 313 ALQEYILMCCQCPAGGLLDKP 333
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+ Q PH+A T
Sbjct: 94 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+ Q PH+A T
Sbjct: 72 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 131
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 132 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 191
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 192 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 251
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 252 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 311
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 312 ALQEYILMCCQCPAGGLLDKP 332
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+ Q PH+A T
Sbjct: 73 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 132
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 133 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 192
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 193 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 252
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 253 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 312
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 313 ALQEYILMCCQCPAGGLLDKP 333
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+ Q PH+A T
Sbjct: 73 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 132
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 133 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 192
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 193 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 252
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 253 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 312
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 313 ALQEYILMCCQCPAGGLLDKP 333
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/261 (60%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+ Q PH+A T
Sbjct: 93 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 152
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 153 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 212
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 213 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 272
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 273 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 332
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 333 ALQEYILMCCQCPAGGLLDKP 353
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 330 bits (845), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 158/261 (60%), Positives = 183/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP Q PH+A T
Sbjct: 94 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAY+ INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 330 bits (845), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 158/261 (60%), Positives = 183/261 (70%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP Q PH+A T
Sbjct: 94 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAY+ INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 325 bits (834), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 157/261 (60%), Positives = 182/261 (69%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR +CYWI HSL LLDEP+ + V FL CQSP Q PH+A T
Sbjct: 94 ECLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAY+ INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 325 bits (834), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 157/261 (60%), Positives = 182/261 (69%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR +CYWI HSL LLDEP+ + V FL CQSP Q PH+A T
Sbjct: 94 ECLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAY+ INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 324 bits (831), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/261 (60%), Positives = 182/261 (69%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAAT 65
CLDASR +CYWI HSL LLDEP+ + V FL CQSP+ Q PH+A T
Sbjct: 94 ECLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
AAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 TAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
pdb|3SFX|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 520
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 153/320 (47%), Gaps = 61/320 (19%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXX--XXXXXXQDPHIAA 64
LDASR W+ +W HSL LL L K VV+ L SP Q PH+
Sbjct: 83 SLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLP 142
Query: 65 TYAAVNCLIILGTPEAYN-----CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA 119
TYA+V L I G + R + +F R K PDGGF V +GGEVD+RG YC
Sbjct: 143 TYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCL 202
Query: 120 LCVALLTQVYSEDLFNNTREWLTACQTYEGGF--------------SGYPG--------- 156
L VA L + + +L +N ++++ACQTYEGGF S +P
Sbjct: 203 LVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSM 262
Query: 157 FEAHGGYTFCGFAALCLLKSEHL------CDIKALLRWTTNRQMNF--EGGFQGRTNKLV 208
EAHGGYT C + LL S L D A LRWT +Q GGF+GRTNKLV
Sbjct: 263 AEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLV 322
Query: 209 DGCYSFWQGGLFPL------------IYRSLMKAGDTCLDGHW--------LFHHRALQE 248
DGCYS+W GG P+ + +S ++ + +G W +F+ ALQE
Sbjct: 323 DGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQE 382
Query: 249 YILICCQH---FNGGLLDKP 265
+ L+ Q GGL DKP
Sbjct: 383 FTLVAAQQDPGSTGGLRDKP 402
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATYAAVNCLIILG 76
YW + L+ + L +K ++ F+ CQ DPH+ T +AV L +
Sbjct: 50 YWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLY- 107
Query: 77 TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
++ + IN K+ ++Q L+ DG F GE+D R +CA VA L + D N
Sbjct: 108 --DSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA--VATLALLGKLDAINV 163
Query: 137 TR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194
+ E++ +C ++GGF PG E+H G +C L + H + L W RQ+
Sbjct: 164 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 223
Query: 195 NFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICC 254
GG GR KL D CYS+W +I R HW+ + L+ +IL C
Sbjct: 224 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------HWIDREK-LRSFILACQ 270
Query: 255 QHFNGGLLDKPENMV 269
GG D+P +MV
Sbjct: 271 DEETGGFADRPGDMV 285
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 138 REWLTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLKSEHL 179
R ++ ACQ E GGF+ PG +T G A L LL E +
Sbjct: 263 RSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQI 305
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATYAAVNCLIILG 76
YW + L+ + L +K ++ F+ CQ DPH+ T +AV L +
Sbjct: 51 YWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLY- 108
Query: 77 TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
++ + IN K+ ++Q L+ DG F GE+D R +CA VA L + D N
Sbjct: 109 --DSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA--VATLALLGKLDAINV 164
Query: 137 TR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194
+ E++ +C ++GGF PG E+H G +C L + H + L W RQ+
Sbjct: 165 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 224
Query: 195 NFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICC 254
GG GR KL D CYS+W +I R HW+ + L+ +IL C
Sbjct: 225 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------HWIDREK-LRSFILACQ 271
Query: 255 QHFNGGLLDKPENMV 269
GG D+P +MV
Sbjct: 272 DEETGGFADRPGDMV 286
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 138 REWLTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLKSEHL 179
R ++ ACQ E GGF+ PG +T G A L LL E +
Sbjct: 264 RSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQI 306
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 90/168 (53%), Gaps = 10/168 (5%)
Query: 61 HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGF-HVHDGGEVDIRGVYCA 119
HIA TY ++CLIILG + + +++ L+ L+ DG F V +G E D+R VYCA
Sbjct: 121 HIAMTYTGLSCLIILG--DDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCA 178
Query: 120 LCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL-KSEH 178
C+ + +S ++ +Y+ G + G E+HGG TFCG A+LCL+ K E
Sbjct: 179 SCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE 238
Query: 179 LCDIKAL---LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223
+ K L RW RQ N G+ GR NK VD CYSFW G L+
Sbjct: 239 VFSEKELNRIKRWCIMRQQN---GYHGRPNKPVDTCYSFWVGATLKLL 283
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/162 (16%), Positives = 63/162 (38%), Gaps = 4/162 (2%)
Query: 31 SSADKSCVVNFLSQCQSPNXXXXXXXXQDPHIAATYAAVNCLIILGT-PEAYNCINRPKL 89
S D ++++ + S + + H +T+ + L ++G E ++ ++
Sbjct: 189 SGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRI 248
Query: 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQT-YE 148
K++ + G+H VD + L +++ F R ++ + Q
Sbjct: 249 KRWC--IMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLV 306
Query: 149 GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTT 190
GGF+ +P + + G L L++ +C + L +T
Sbjct: 307 GGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVST 348
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 60/220 (27%)
Query: 60 PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDG----GF------HVHDG- 108
P++++T A+ L+IL +P + INR K+ FL + + DG GF + +G
Sbjct: 92 PNLSSTLFALYNLLILKSP-YHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGD 150
Query: 109 ----GEVDIRGVYCALCVALLTQVYSEDLFNNTREW-------LTACQTY-------EGG 150
GE D+R Y AL + L + Y ++ NN RE L + Q + GG
Sbjct: 151 YKQYGEPDLRVCYMALLIRHLMK-YDDNNNNNNREDSNETDIDLISLQQFILDRININGG 209
Query: 151 FSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE------------- 197
FS E+H G+TFC A+L LL L +K+ W +RQ+++
Sbjct: 210 FSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGN 268
Query: 198 --------------GGFQGRTNKLVDGCYSFW-QGGLFPL 222
GGF GR NKL D CYS+W G L+ +
Sbjct: 269 GNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNI 308
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG 149
++ LQ L++ FHV ++ I+ + T++Y D N T E A Q YE
Sbjct: 422 RKVLQTLESRPSNFHVLYNLDLSIKDKIAKIA----TEIYGADGVNYTAEADKAIQRYES 477
Query: 150 -GFSGYPGFEAHGGYTFC 166
G+ P A Y+F
Sbjct: 478 LGYGNLPVVMAKTQYSFS 495
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG 149
++ LQ L++ FHV ++ I+ + T++Y D N T E A Q YE
Sbjct: 422 RKVLQTLESRPSNFHVLYNLDLSIKDKIAKIA----TEIYGADGVNYTAEADKAIQRYES 477
Query: 150 -GFSGYPGFEAHGGYTFC 166
G+ P A Y+F
Sbjct: 478 LGYGNLPVVMAKTQYSFS 495
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 94 QRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQV--YSEDLFNNTR--EWLTACQTYEG 149
Q+ KAP G F+ ++ L L Q SEDL + T +W+T Q +G
Sbjct: 1164 QKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQG 1223
Query: 150 GFS 152
GFS
Sbjct: 1224 GFS 1226
>pdb|1QJQ|A Chain A, Ferric Hydroxamate Receptor From Escherichia Coli (fhua)
pdb|1QKC|A Chain A, Escherichia Coli Ferric Hydroxamate Uptake Receptor (Fhua)
In Complex Delta Two-Albomycin
pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fhua)
pdb|2GRX|A Chain A, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
pdb|2GRX|B Chain B, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
Length = 725
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 96 LKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG 149
+ P+G F +GGE+ RGV AL V + T T TY+G
Sbjct: 561 MADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKG 614
>pdb|1FI1|A Chain A, Fhua In Complex With Lipopolysaccharide And Rifamycin
Cgp4832
Length = 707
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 96 LKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG 149
+ P+G F +GGE+ RGV AL V + T T TY+G
Sbjct: 543 MADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKG 596
>pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (fhua) From E.coli
Length = 723
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 96 LKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG 149
+ P+G F +GGE+ RGV AL V + T T TY+G
Sbjct: 559 MADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKG 612
>pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli In
Complex With Bound Ferrichrome-Iron
Length = 705
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 99 PDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG 149
P+G F +GGE+ RGV AL V + T T TY+G
Sbjct: 544 PEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKG 594
>pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Receptor (Fhua) In
Complex With Bound Ferrichrome-Iron
Length = 725
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 99 PDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG 149
P+G F +GGE+ RGV AL V + T T TY+G
Sbjct: 564 PEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKG 614
>pdb|3F2Z|A Chain A, Crystal Structure Of The C-Terminal Domain Of A Chitobiase
(Bf3579) From Bacteroides Fragilis, Northeast Structural
Genomics Consortium Target Bfr260b
Length = 159
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 190 TNRQMNFEGGFQGRTNKLVDGC-----YSFWQGGLFPLIYRSLM 228
T + + EG G L+DG +S WQGG PL Y ++
Sbjct: 16 TTEEASGEGSNNGHAKHLIDGNIETFWHSRWQGGSDPLPYEIII 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,186,019
Number of Sequences: 62578
Number of extensions: 389012
Number of successful extensions: 944
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 36
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)