BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15672
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 331 bits (848), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 167/261 (63%), Positives = 192/261 (73%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+GGFGGGPGQ PH+A T
Sbjct: 94 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 330 bits (847), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 167/261 (63%), Positives = 192/261 (73%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP+GGFGGGPGQ PH+A T
Sbjct: 94 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAYN INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 330 bits (845), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 166/261 (63%), Positives = 191/261 (73%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP GGFGGGPGQ PH+A T
Sbjct: 94 ECLDASRPWLCYWILHSLELLDEPIPQMVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAY+ INR KL Q+L LK PDG F +HDGGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGSFLMHDGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L W+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSRWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPTGGLLDKP 354
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 328 bits (842), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/261 (63%), Positives = 191/261 (73%), Gaps = 1/261 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP GGFGGGPGQ PH+A T
Sbjct: 94 ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPT 153
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L I+GT EAY+ INR KL Q+L LK PDG F +H GGEVD+R YCA VA L
Sbjct: 154 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 213
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
T + + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+L
Sbjct: 214 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 273
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHR 244
L+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +
Sbjct: 274 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 333
Query: 245 ALQEYILICCQHFNGGLLDKP 265
ALQEYIL+CCQ GGLLDKP
Sbjct: 334 ALQEYILMCCQCPAGGLLDKP 354
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 256 bits (654), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/314 (43%), Positives = 175/314 (55%), Gaps = 55/314 (17%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
N R W+CYWI HS++LL E + + V+FL++CQ PNGG+ GGPGQ PH+A T
Sbjct: 39 NAQSIIRPWLCYWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATT 98
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN LI LG ++ INR KL F++R+K P+GGF +HD GE+D+R Y A+ VA +
Sbjct: 99 YAAVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASV 158
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
+ ++L N +++ +CQTYEGG +G PG EAHGGYTFCG AA+ L+ + D+ L
Sbjct: 159 LNILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRL 218
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYR------------------SL 227
L W RQ E GFQGRTNKLVDGCYSFWQGG L+ R S
Sbjct: 219 LDWVVFRQGK-ECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSIIDEQMAEASQFVTVSD 277
Query: 228 MKAGDTCLDG-------------------------------HW-----LFHHRALQEYIL 251
CLDG W LFH ALQ+YIL
Sbjct: 278 APEEKECLDGTSSHATSHIRHEGMNESCSSDVKNIGYNFISEWRQSEPLFHSIALQQYIL 337
Query: 252 ICCQHFNGGLLDKP 265
+C Q +GGL DKP
Sbjct: 338 LCSQEQDGGLRDKP 351
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 148/220 (67%), Gaps = 1/220 (0%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
+ LDA+R W+CYWI HS++LL E + +S ++FL +CQ GG+GGGPGQ PH+A T
Sbjct: 102 SSLDANRPWLCYWILHSIALLGETVDDELESNAIDFLGRCQGSEGGYGGGPGQLPHLATT 161
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAVN L+ LG +A + INR K+ FL+R+K GGF +HD GE+D+R Y A+ VA +
Sbjct: 162 YAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASI 221
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
+ ++L +++ +CQTYEGG G PG EAHGGYT+CG AA+ L+ ++ +L
Sbjct: 222 LNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSL 281
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYR 225
+ W +RQ E GFQGRTNKLVDGCY+FWQ L+ R
Sbjct: 282 MNWAVHRQ-GVEMGFQGRTNKLVDGCYTFWQAAPCVLLQR 320
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 203 bits (517), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 157/262 (59%), Gaps = 5/262 (1%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAAT 65
LDASRAW+ YW SL++L + L S+ ++ + Q + P+GGF GG GQD H+ +T
Sbjct: 50 TVLDASRAWMVYWELSSLAILGK-LDSSVCERAISSVRQLKGPSGGFCGGNGQDEHLLST 108
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YA++ + + + +AY+ I R +L +L LK PDG F V++ GE D R VY A+CV+ L
Sbjct: 109 YASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRVNNEGESDARSVYAAVCVSSL 168
Query: 126 TQVYSED-LFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKS-EHLCDIK 183
+ +D LF T +WL CQTYEGG SG P EAHGGYTFC AA+ LL ++L +IK
Sbjct: 169 VGISMDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYTFCALAAIALLGGLDNLNEIK 228
Query: 184 ALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHH 243
L W RQ GF GR+NKLVDGCYS+W G ++ A L + ++
Sbjct: 229 -LSTWLVQRQDPALYGFSGRSNKLVDGCYSWWVGASHVIVASGYGSASHKSLP-NLFYNP 286
Query: 244 RALQEYILICCQHFNGGLLDKP 265
L YIL CCQ +GGL DKP
Sbjct: 287 EKLLGYILQCCQSTSGGLRDKP 308
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 201 bits (511), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 156/288 (54%), Gaps = 32/288 (11%)
Query: 8 LDASRAWICYWICHSLSLLDE----PLSSADKSCVVNFLSQCQSPNGGFGGGP------- 56
LD+S+ WI +WI + + +LD P S+ S ++ L +
Sbjct: 79 LDSSKVWISFWILNGMDMLDSLDSYPNISSRASKYLSILQNDDNNGNNNNRENNQNGGGF 138
Query: 57 ----GQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVD 112
H+ +T+AAV+ L ++GT E+Y I+R + +FL R+K +G F DGGE D
Sbjct: 139 GGGNSHTSHVVSTFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTSEDGGEYD 198
Query: 113 IRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALC 172
R YCA+ VA + + + +L ++L +CQTYEGGF YP EAHGGYTFC AAL
Sbjct: 199 SRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALS 258
Query: 173 LLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI------YRS 226
+L S H D+ +L RW T RQ N +GGF+GRTNKLVD CYS+WQG ++ +I Y+
Sbjct: 259 ILNSLHKIDMNSLHRWITYRQSN-DGGFEGRTNKLVDTCYSYWQGAVYIIIQSYFNYYKK 317
Query: 227 LM------KAGDTCLDGHWLFHHRALQEYILICCQHFN---GGLLDKP 265
K GD +G LF+ LQEY++ CQ + G D P
Sbjct: 318 QQQDDGDGKEGDQQEEG-LLFNQAKLQEYVIRFCQQSDKKYSGFSDHP 364
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 155/263 (58%), Gaps = 14/263 (5%)
Query: 8 LDASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
LDAS+ W+ YWI +SL ++D LS K +V+ L G FGGGPGQ H+A+TY
Sbjct: 102 LDASQPWMLYWIANSLKVMDRDWLSDDTKRKIVDKLFTISPSGGPFGGGPGQLSHLASTY 161
Query: 67 AAVNCLIILGTPEA-YNCINRPKLKQFLQRLKAPDGGFHV-HDGGEVDIRGVYCALCVAL 124
AA+N L + + ++ I+R + Q+L LK P+GGF + GEVD RG+YCAL +A
Sbjct: 162 AAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIYCALSIAT 221
Query: 125 LTQVYSEDLFNNTREWLTACQTYEGGFSGYPGF-EAHGGYTFCGFAALCLLKSEHLCDIK 183
L + +E+L +L CQ YEGGF P EAHGGYTFC A+L +L+S +++
Sbjct: 222 LLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRSMDQINVE 281
Query: 184 ALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHH 243
LL W++ RQ+ E GF GR+NKLVDGCYSFW GG ++ F+
Sbjct: 282 KLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAIL---------EAFGYGQCFNK 332
Query: 244 RALQEYILICCQHFNG-GLLDKP 265
AL++YIL CCQ GL DKP
Sbjct: 333 HALRDYILYCCQEKEQPGLRDKP 355
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 119/238 (50%), Gaps = 22/238 (9%)
Query: 34 DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFL 93
DK+ V+ +L CQ NGGFGG D H+ +T +AV LI +A + I+ + ++
Sbjct: 71 DKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILI---QYDALDKIDINSVVDYV 127
Query: 94 QRLKAPDGGFHVHDGGEVDIRGVYCA-LCVALLTQVYSEDLFN--NTREWLTACQTYEGG 150
+L+ DG F GEVD R Y A +C++LL S D N E++ +CQ ++GG
Sbjct: 128 VKLQREDGSFVGDQWGEVDTRFSYAAIMCLSLLK---SLDKINCEKAVEYILSCQNFDGG 184
Query: 151 FSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDG 210
F PG E+H G F AL +L + DI L W + RQ+ GG GR K D
Sbjct: 185 FGSIPGAESHAGQIFTCVGALSILNEINKIDIDKLGWWLSERQLP-NGGLNGRPEKSSDV 243
Query: 211 CYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENM 268
CYS+W I R HW+ + + L+ YIL C + GG+ DKP ++
Sbjct: 244 CYSWWVLSALSAIDRL-----------HWIDNDK-LKSYILKCQDNETGGIADKPGDI 289
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 14/175 (8%)
Query: 91 QFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGG 150
+++ +L + F + + G+Y L L + + N +WL +CQ GG
Sbjct: 29 EYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLLSCQKSNGG 88
Query: 151 FSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDG 210
F G + H T L + DI +++ + Q +G F G VD
Sbjct: 89 FGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVVKLQRE-DGSFVGDQWGEVDT 147
Query: 211 CYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP 265
+S+ ++ SL+K+ D + EYIL CQ+F+GG P
Sbjct: 148 RFSY-----AAIMCLSLLKSLDK-------INCEKAVEYIL-SCQNFDGGFGSIP 189
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 122/264 (46%), Gaps = 26/264 (9%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQC-QSPNGGFGGGPGQDPHIAATYAAVNCLIIL 75
YW +L ++E LS+ + V++++ C G FG P D HI +T +A+ L I
Sbjct: 45 YWGVTALITMNE-LSALAQQDVIDYIMLCWDDKTGAFGSFPKHDGHILSTLSALQVLKIY 103
Query: 76 GTP--------EAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ 127
E+ N R +L +F+ L+ PDG F GEVD R VY A+ L
Sbjct: 104 DQELTVLNDNNESSNGNKRERLIKFITGLQLPDGSFQGDKYGEVDTRFVYTAVSSLSLLN 163
Query: 128 VYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIK---- 183
++ + + ++ C ++GGF PG E+H F AL ++ L D++
Sbjct: 164 ALTDSIADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTCVGALAIMNKLDLLDVENKKV 223
Query: 184 ALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHH 243
L+ W T RQ+ GGF GR KL D CYS+W ++ R +W+
Sbjct: 224 KLIDWLTERQVLPSGGFNGRPEKLPDVCYSWWVLSSLSILKRK-----------NWV-DL 271
Query: 244 RALQEYILICCQHFNGGLLDKPEN 267
+ L+ +IL C NGG D+P N
Sbjct: 272 KILENFILTCQDLENGGFSDRPGN 295
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 6/163 (3%)
Query: 16 CYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIIL 75
Y SLSLL+ L+ + F+ QC + +GGFG PG + H A + V L I+
Sbjct: 152 VYTAVSSLSLLN-ALTDSIADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTCVGALAIM 210
Query: 76 GTPEAYNCINRP-KLKQFL-QRLKAPDGGFHVHDGGEVDIRGVYCALC-VALLTQVYSED 132
+ + N+ KL +L +R P GGF+ D+ + L +++L + D
Sbjct: 211 NKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDVCYSWWVLSSLSILKRKNWVD 270
Query: 133 LFNNTREWLTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLL 174
L ++ CQ E GGFS PG + +T A L L+
Sbjct: 271 L-KILENFILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLSLI 312
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 119/255 (46%), Gaps = 21/255 (8%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
YW + L+ + L ++ ++ F+ CQ GG G DPH+ T +AV IL
Sbjct: 51 YWGLTVMDLMGQ-LHRMNREEILTFIKSCQHECGGISASIGHDPHLLYTLSAVQ---ILT 106
Query: 77 TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
++ N I+ K+ +++Q L+ DG F GE+D R +CA VA L + D N
Sbjct: 107 LYDSINVIDINKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCA--VATLALLGKLDAINV 164
Query: 137 TR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194
+ E++ +C ++GGF PG E+H G +C L + H + L W RQ+
Sbjct: 165 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 224
Query: 195 NFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICC 254
GG GR KL D CYS+W +I R HW+ + L+ +IL C
Sbjct: 225 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------HWIDREK-LRSFILACQ 271
Query: 255 QHFNGGLLDKPENMV 269
GG D+P +MV
Sbjct: 272 DEETGGFADRPGDMV 286
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 22 SLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAY 81
+L+LL + L + + + F+ C + +GGFG PG + H Y C L
Sbjct: 152 TLALLGK-LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC---CTGFLAITSQL 207
Query: 82 NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALC-VALLTQVYSEDLFNNTREW 140
+ +N L +L + P GG + D+ + L + ++ +++ D R +
Sbjct: 208 HQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDR-EKLRSF 266
Query: 141 LTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLKSEHL 179
+ ACQ E GGF+ PG +T G A L LL E +
Sbjct: 267 ILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQI 306
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 115/232 (49%), Gaps = 19/232 (8%)
Query: 1 MSRVGNCLDASRAWI--------CYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGF 52
+ +GN D W+ YW C S LL + DK +V+FL C + +GGF
Sbjct: 13 LHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKK-DQIDKERIVSFLLSCLTESGGF 71
Query: 53 GGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVD 112
PG D HI T AV L +L ++ + +++ K+ ++ L+ DG GE+D
Sbjct: 72 ACYPGHDDHITNTVYAVQVLAML---DSLHVVDKDKVASYIIGLQNEDGSMKGDRWGEID 128
Query: 113 IRGVYCAL-CVALLTQVYSEDLFNNTR-EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAA 170
R +Y + C+A+L ++ + L NT +WL C ++GGF PG E+HG F AA
Sbjct: 129 ARFLYSGINCLAILGKL--DYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFTCVAA 186
Query: 171 LCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPL 222
L +L L D + L W + RQ+ GG GR KL D CY +W L PL
Sbjct: 187 LKILNKLDLIDEELLGWWISERQVK-GGGLNGRPEKLPDSCYGWWD--LSPL 235
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 118/255 (46%), Gaps = 21/255 (8%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
YW + L+ + L +K ++ F+ CQ GG G DPH+ T +AV IL
Sbjct: 51 YWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQ---ILT 106
Query: 77 TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
++ + IN K+ ++Q L+ DG F GE+D R +CA VA L + D N
Sbjct: 107 LYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA--VATLALLGKLDAINV 164
Query: 137 TR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194
+ E++ +C ++GGF PG E+H G +C L + H + L W RQ+
Sbjct: 165 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 224
Query: 195 NFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICC 254
GG GR KL D CYS+W +I R HW+ + L+ +IL C
Sbjct: 225 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------HWIDREK-LRSFILACQ 271
Query: 255 QHFNGGLLDKPENMV 269
GG D+P +MV
Sbjct: 272 DEETGGFADRPGDMV 286
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 22 SLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAY 81
+L+LL + L + + + F+ C + +GGFG PG + H Y C L
Sbjct: 152 TLALLGK-LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC---CTGFLAITSQL 207
Query: 82 NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALC-VALLTQVYSEDLFNNTREW 140
+ +N L +L + P GG + D+ + L + ++ +++ D R +
Sbjct: 208 HQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDR-EKLRSF 266
Query: 141 LTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLKSEHL 179
+ ACQ E GGF+ PG +T G A L LL E +
Sbjct: 267 ILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQI 306
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 118/255 (46%), Gaps = 21/255 (8%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
YW + L+ + L ++ ++ F+ CQ GG G DPH+ T +AV IL
Sbjct: 59 YWGLTVMDLMGQ-LHRMNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAVQ---ILT 114
Query: 77 TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
++ + IN K+ ++Q L+ DG F GE+D R +CA VA L + D N
Sbjct: 115 LYDSVHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA--VATLALLGKLDAINV 172
Query: 137 TR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194
+ E++ +C ++GGF PG E+H G +C L + H + L W RQ+
Sbjct: 173 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 232
Query: 195 NFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICC 254
GG GR KL D CYS+W +I R HW+ + L+ +IL C
Sbjct: 233 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------HWIDREK-LRSFILACQ 279
Query: 255 QHFNGGLLDKPENMV 269
GG D+P +MV
Sbjct: 280 DEETGGFADRPGDMV 294
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 22 SLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAY 81
+L+LL + L + + + F+ C + +GGFG PG + H Y C L
Sbjct: 160 TLALLGK-LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC---CTGFLAITSQL 215
Query: 82 NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALC-VALLTQVYSEDLFNNTREW 140
+ +N L +L + P GG + D+ + L + ++ +++ D R +
Sbjct: 216 HQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDR-EKLRSF 274
Query: 141 LTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLKSEHL 179
+ ACQ E GGF+ PG +T G A L LL E +
Sbjct: 275 ILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQI 314
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 119/255 (46%), Gaps = 21/255 (8%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
YW + L+ + L ++ ++ F+ CQ GG G DPH+ T +AV IL
Sbjct: 51 YWGLTVMDLMGQ-LHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQ---ILT 106
Query: 77 TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
++ N I+ K+ ++++ L+ DG F GE+D R +CA VA L + D N
Sbjct: 107 LYDSINVIDVNKVVEYVKGLQKEDGSFAGDIWGEIDTRFSFCA--VATLALLGKLDAINV 164
Query: 137 TR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194
+ E++ +C ++GGF PG E+H G +C L + H + L W RQ+
Sbjct: 165 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 224
Query: 195 NFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICC 254
GG GR KL D CYS+W +I R HW+ + L+ +IL C
Sbjct: 225 P-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------HWIDREK-LRNFILACQ 271
Query: 255 QHFNGGLLDKPENMV 269
GG D+P +MV
Sbjct: 272 DEETGGFADRPGDMV 286
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 22 SLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAY 81
+L+LL + L + + + F+ C + +GGFG PG + H Y C L
Sbjct: 152 TLALLGK-LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC---CTGFLAITSQL 207
Query: 82 NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALC-VALLTQVYSEDLFNNTREW 140
+ +N L +L + P GG + D+ + L + ++ +++ D R +
Sbjct: 208 HQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDR-EKLRNF 266
Query: 141 LTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLKSEHL 179
+ ACQ E GGF+ PG +T G A L LL E +
Sbjct: 267 ILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQI 306
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 115/247 (46%), Gaps = 37/247 (14%)
Query: 8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQ-----------------SPNG 50
L+ SR I ++ L +LD L +K ++ ++ Q S
Sbjct: 43 LETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYL 101
Query: 51 GFGGGPGQDP---------HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDG 101
G P ++P HIA TY ++CL+ILG + + +N+ L+ L+ DG
Sbjct: 102 GIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLVILG--DDLSRVNKEACLAGLRALQLEDG 159
Query: 102 GF-HVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH 160
F V +G E D+R VYCA C+ + +S ++ +Y+ G + G E+H
Sbjct: 160 SFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYIRRSMSYDNGLAQGAGLESH 219
Query: 161 GGYTFCGFAALCLL-KSEHLCDIKAL---LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQ 216
GG TFCG A+LCL+ K E + K L RW RQ N G+ GR NK VD CYSFW
Sbjct: 220 GGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQN---GYHGRPNKPVDTCYSFWV 276
Query: 217 GGLFPLI 223
G L+
Sbjct: 277 GATLKLL 283
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 4/162 (2%)
Query: 31 SSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGT-PEAYNCINRPKL 89
S D +N++ + S + G G G + H +T+ + L ++G E ++ ++
Sbjct: 189 SGMDMKKAINYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRI 248
Query: 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQ-TYE 148
K++ + G+H VD + L +++ F R ++ + Q
Sbjct: 249 KRWC--IMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLV 306
Query: 149 GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTT 190
GGF+ +P + + G L L++ +C + L +T
Sbjct: 307 GGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVST 348
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 118/249 (47%), Gaps = 37/249 (14%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQS-PNG--------GFGGG- 55
+ L+ SR I ++ L +LD L +K ++ ++ Q P GF G
Sbjct: 41 SSLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSS 99
Query: 56 -------PGQDP---------HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAP 99
P ++P HIA TY ++CLIILG + + +++ L+ L+
Sbjct: 100 YLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG--DDLSRVDKEACLAGLRALQLE 157
Query: 100 DGGF-HVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFE 158
DG F V +G E D+R VYCA C+ + +S ++ +Y+ G + G E
Sbjct: 158 DGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLE 217
Query: 159 AHGGYTFCGFAALCLL-KSEHLCDIKAL---LRWTTNRQMNFEGGFQGRTNKLVDGCYSF 214
+HGG TFCG A+LCL+ K E + K L RW RQ N G+ GR NK VD CYSF
Sbjct: 218 SHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQN---GYHGRPNKPVDTCYSF 274
Query: 215 WQGGLFPLI 223
W G L+
Sbjct: 275 WVGATLKLL 283
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 4/162 (2%)
Query: 31 SSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGT-PEAYNCINRPKL 89
S D ++++ + S + G G G + H +T+ + L ++G E ++ ++
Sbjct: 189 SGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRI 248
Query: 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQT-YE 148
K++ + G+H VD + L +++ F R ++ + Q
Sbjct: 249 KRWC--IMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLV 306
Query: 149 GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTT 190
GGF+ +P + + G L L++ +C + L +T
Sbjct: 307 GGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVST 348
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 117/249 (46%), Gaps = 37/249 (14%)
Query: 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNF--------------LSQCQSPNGG 51
+ L+ SR I ++ L +LD L +K ++ + LS+C
Sbjct: 41 SSLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLSRCGFRGSS 99
Query: 52 FGG---GPGQDP---------HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAP 99
+ G P ++P HIA TY ++CLIILG + +++ L+ L+
Sbjct: 100 YLGIPFNPSKNPGAAHPYDSGHIAMTYTGLSCLIILG--DDLGRVDKEACLAGLRALQLE 157
Query: 100 DGGF-HVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFE 158
DG F V +G E D+R VYCA C+ + +S ++ +Y+ G + G E
Sbjct: 158 DGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLE 217
Query: 159 AHGGYTFCGFAALCLL-KSEHLCDIKAL---LRWTTNRQMNFEGGFQGRTNKLVDGCYSF 214
+HGG TFCG A+LCL+ K E + K L RW RQ N G+ GR NK VD CYSF
Sbjct: 218 SHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQN---GYHGRPNKPVDTCYSF 274
Query: 215 WQGGLFPLI 223
W G L+
Sbjct: 275 WVGATLKLL 283
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 4/162 (2%)
Query: 31 SSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGT-PEAYNCINRPKL 89
S D ++++ + S + G G G + H +T+ + L ++G E ++ ++
Sbjct: 189 SGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRI 248
Query: 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQ-TYE 148
K++ + G+H VD + L +++ F R ++ + Q
Sbjct: 249 KRWC--IMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLV 306
Query: 149 GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTT 190
GGF+ +P + + G L L++ +C + L +T
Sbjct: 307 GGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVST 348
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 114/247 (46%), Gaps = 37/247 (14%)
Query: 8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQ-----------------SPNG 50
L+ SR I ++ L +LD L +K ++ ++ Q S
Sbjct: 43 LETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYL 101
Query: 51 GFGGGPGQDP---------HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDG 101
G P + P HIA TY ++CL+ILG + + +N+ L+ L+ DG
Sbjct: 102 GIPFNPSKAPGTAHPYDSGHIAMTYTGLSCLVILG--DDLSRVNKEACLAGLRALQLEDG 159
Query: 102 GF-HVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH 160
F V +G E D+R VYCA C+ + +S ++ +Y+ G + G E+H
Sbjct: 160 SFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESH 219
Query: 161 GGYTFCGFAALCLL-KSEHLCDIKAL---LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQ 216
GG TFCG A+LCL+ K E + K L RW RQ N G+ GR NK VD CYSFW
Sbjct: 220 GGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQN---GYHGRPNKPVDTCYSFWV 276
Query: 217 GGLFPLI 223
G L+
Sbjct: 277 GATLKLL 283
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/181 (17%), Positives = 73/181 (40%), Gaps = 7/181 (3%)
Query: 31 SSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGT-PEAYNCINRPKL 89
S D + ++ + S + G G G + H +T+ + L ++G E ++ ++
Sbjct: 189 SGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRI 248
Query: 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQ-TYE 148
K++ + G+H VD + L +++ F R ++ + Q
Sbjct: 249 KRWC--IMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLV 306
Query: 149 GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLR---WTTNRQMNFEGGFQGRTN 205
GGF+ +P + + G L L++ +C + L T+ R ++ ++ + +
Sbjct: 307 GGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQSWKTKDS 366
Query: 206 K 206
K
Sbjct: 367 K 367
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 17/249 (6%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
YW +++ L + L +VN++ C++ +GG+G PG D H+ T AV LII
Sbjct: 57 YWCVNAMDL-SKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFN 115
Query: 77 TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
+ E + + ++++ L+ DG F GEVD R C+L L S ++
Sbjct: 116 SIEKADA---DTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDS 172
Query: 137 TREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNF 196
+L C +GGF PG E+H G +C AL + D W RQ +
Sbjct: 173 AVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCD- 231
Query: 197 EGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQH 256
GG GR KL D CYS+W ++ R D A++++I C
Sbjct: 232 SGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSD------------AMKKFIYACQDD 279
Query: 257 FNGGLLDKP 265
GG D+P
Sbjct: 280 ETGGFADRP 288
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 6/159 (3%)
Query: 30 LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKL 89
LS+ + V FL +C + +GGFG PG + H Y V L I G + I+R +
Sbjct: 165 LSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDE---IDRDRT 221
Query: 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALC-VALLTQVYSEDLFNNTREWLTACQTYE 148
++L + GG + D+ + L +A+L ++ D + ++++ ACQ E
Sbjct: 222 AEWLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFID-SDAMKKFIYACQDDE 280
Query: 149 -GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
GGF+ PG A +T G AAL L + L + +
Sbjct: 281 TGGFADRPGDCADPFHTVFGIAALSLFGDDTLESVDPIF 319
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 115/256 (44%), Gaps = 16/256 (6%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
YW +L +LD P + + + LS G F P D H+ T +AV L
Sbjct: 40 YWGLTALCVLDSPETFVKEEVISFVLSCWDDKYGAFAPFPRHDAHLLTTLSAVQILATYD 99
Query: 77 TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
+ + +L F++ + DG F GEVD R VY AL + + ++ +
Sbjct: 100 ALDVLGKDRKVRLISFIRGNQLEDGSFQGDRFGEVDTRFVYTALSALSILGELTSEVVDP 159
Query: 137 TREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL-KSEHLCD--IKALLRWTTNRQ 193
+++ C ++GGF P E+H F AL + K + L D ++ + W RQ
Sbjct: 160 AVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIANKLDMLSDDQLEEIGWWLCERQ 219
Query: 194 MNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILIC 253
+ EGG GR +KL D CYS+W +I R LD W+ ++ L E+IL C
Sbjct: 220 LP-EGGLNGRPSKLPDVCYSWWVLSSLAIIGR---------LD--WI-NYEKLTEFILKC 266
Query: 254 CQHFNGGLLDKPENMV 269
GG+ D+PEN V
Sbjct: 267 QDEKKGGISDRPENEV 282
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 36/228 (15%)
Query: 58 QDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFH---VHDGGEVDIR 114
Q+P +A T ++ CL+ LG + + I+R +K F++ K G F V + D+R
Sbjct: 93 QEPQLAGTVFSICCLLFLG--DNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMR 150
Query: 115 GVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL 174
+Y A +A L D + +++ +CQ YEGGFS P EAH G TFC A+ L+
Sbjct: 151 QLYMATTIASLLDFSLSDPLCSI-QYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLI 209
Query: 175 -------------KSEHLCD----IKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQG 217
+S +L D ++ L+RW +RQ++ GG GRTNK VD CY++W
Sbjct: 210 LKMIPNSSLNTSNQSYNLMDCVPKVERLIRWLASRQLS-SGGLNGRTNKDVDTCYAYWVL 268
Query: 218 GLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP 265
L LD L++Y+L+ QH GG P
Sbjct: 269 SSLKL------------LDALPFIDGGELEKYLLLHAQHALGGFSKTP 304
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 17/183 (9%)
Query: 24 SLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVN--CLIILGTP--- 78
SLLD LS D C + ++ CQ GGF P + H AT+ A+ LI+ P
Sbjct: 160 SLLDFSLS--DPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILKMIPNSS 217
Query: 79 -----EAYNCIN-RPKLKQFLQRLKA---PDGGFHVHDGGEVDIRGVYCAL-CVALLTQV 128
++YN ++ PK+++ ++ L + GG + +VD Y L + LL +
Sbjct: 218 LNTSNQSYNLMDCVPKVERLIRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSLKLLDAL 277
Query: 129 YSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRW 188
D + L Q GGFS PG ++ G A+ + + A +
Sbjct: 278 PFIDGGELEKYLLLHAQHALGGFSKTPGEFPDVLHSALGLYAMAYQDDKSFPKVNADIHM 337
Query: 189 TTN 191
T+
Sbjct: 338 TSK 340
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 60 PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFL-QRLKAPDGGFH-VHDGGEVDIRGVY 117
P TY A+ L ILG + ++ +N+ + L +R + DG + G+ D+R ++
Sbjct: 113 PSTPNTYCALLILRILG--DDFSGVNKKAIIDSLRKRQRESDGAISGSPNVGDYDLRHLF 170
Query: 118 CALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSE 177
A ++ + +S + +++ +C +YE F P EAHGG T+C A+L LL
Sbjct: 171 SACAISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGRL 230
Query: 178 HLCD--IKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYR 225
+ + + L W +Q+ GF GRTNK D CY+FW G +I R
Sbjct: 231 DVLEPFKEQLTFWLVKKQIT---GFCGRTNKDPDTCYAFWIGASLMMIDR 277
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 22 SLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
++S + + S+ +K ++++ C S FG P Q+ H TY A+ L +LG
Sbjct: 174 AISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLG 228
>sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1
SV=2
Length = 376
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 55/260 (21%)
Query: 9 DASRAWICYWICHSLSLLDEPLSSA--------DKSCVVNFLSQCQSP--NGGFGGGPGQ 58
D +R I ++ LS+ D +S+ K + L ++ +G G
Sbjct: 35 DVNRMAIIFYSISGLSIFDVNVSAKYGDHLGWMRKHYIKTVLDDTENTVISGFVGSLVMN 94
Query: 59 DPH-----IAATYAAVNCLIILGTPEAYNCI-NRPKLKQFLQRLKAPDGG-------FHV 105
PH + T A+ +I+L E + I ++ L +F+ + + PD G +
Sbjct: 95 IPHATTINLPNTLFALLSMIMLRDYEYFETILDKRSLARFVSKCQRPDRGSFVSCLDYKT 154
Query: 106 HDGGEVD---IRGVYCALCVALLTQVYSEDLFNNTRE------WLTACQTYEGGFSGYPG 156
+ G VD +R Y A+ + + S++ F+ + ++ + Q Y G F +
Sbjct: 155 NCGSSVDSDDLRFCYIAVAILYICGCRSKEDFDEYIDTEKLLGYIMSQQCYNGAFGAHN- 213
Query: 157 FEAHGGYTFCGFAALCLLKS-EHLCDI--KALLRWTTNRQ------MNFE---------- 197
E H GYT C + L LL S E L D + + W +RQ M FE
Sbjct: 214 -EPHSGYTSCALSTLALLSSLEKLSDKFKEDTITWLLHRQVSSHGCMKFESELNASYDQS 272
Query: 198 --GGFQGRTNKLVDGCYSFW 215
GGFQGR NK D CY+FW
Sbjct: 273 DDGGFQGRENKFADTCYAFW 292
>sp|Q0WKY2|CCR4E_ARATH Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis
thaliana GN=CCR4-5 PE=2 SV=2
Length = 454
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 169 AALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223
+ LCL + + D+ LL+ NR F G + RT + DGC FW+ LF L+
Sbjct: 147 SILCLQEVDRFDDLDVLLK---NR--GFRGVHKSRTGEASDGCAIFWKENLFELL 196
>sp|Q4WQG5|CCR4_ASPFU Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=ccr4 PE=3 SV=1
Length = 696
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 188 WTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCL 235
W R M G Q K VDGC +F++G F L+ + L+ G T +
Sbjct: 402 WPRGRAM----GMQEEDAKCVDGCATFFKGSKFILLDKQLINFGQTAV 445
>sp|A2Q9L0|CCR4_ASPNC Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=ccr4 PE=3 SV=1
Length = 656
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 188 WTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCL 235
W R M G Q K VDGC +F++G F L+ + ++ G T +
Sbjct: 376 WPRGRAM----GMQEEEAKSVDGCATFFKGSKFILLDKQMINFGQTAV 419
>sp|A1CIJ6|CCR4_ASPCL Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=ccr4 PE=3 SV=1
Length = 667
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 188 WTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCL 235
W R M G Q K VDGC +F++G F L+ + L+ G T +
Sbjct: 373 WPRGRAM----GMQEEDAKGVDGCATFFKGSKFILLDKQLINFGQTAV 416
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,628,361
Number of Sequences: 539616
Number of extensions: 5325537
Number of successful extensions: 12536
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12336
Number of HSP's gapped (non-prelim): 66
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)