Query psy15672
Match_columns 271
No_of_seqs 193 out of 1684
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 18:37:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0365|consensus 100.0 6E-75 1.3E-79 501.0 21.7 268 1-270 88-355 (423)
2 PLN02710 farnesyltranstransfer 100.0 1.4E-73 3.1E-78 522.2 26.9 270 1-271 60-376 (439)
3 cd02893 FTase Protein farnesyl 100.0 4.6E-70 1E-74 485.0 28.6 271 1-271 15-286 (299)
4 cd02895 GGTase-I Geranylgerany 100.0 6E-67 1.3E-71 466.3 25.6 255 1-271 15-294 (307)
5 PLN03201 RAB geranylgeranyl tr 100.0 3.4E-66 7.3E-71 463.0 26.1 253 1-271 23-278 (316)
6 KOG0366|consensus 100.0 1.9E-65 4.2E-70 427.6 21.3 245 9-271 43-288 (329)
7 COG5029 CAL1 Prenyltransferase 100.0 2.1E-65 4.5E-70 438.3 18.7 256 2-270 44-300 (342)
8 KOG0367|consensus 100.0 1.3E-64 2.7E-69 429.5 19.1 254 1-271 27-306 (347)
9 cd02894 GGTase-II Geranylgeran 100.0 7.3E-63 1.6E-67 437.5 25.6 253 1-271 18-274 (287)
10 cd02890 PTase Protein prenyltr 100.0 1.5E-60 3.1E-65 422.9 26.1 258 1-271 15-273 (286)
11 cd02895 GGTase-I Geranylgerany 100.0 6.5E-51 1.4E-55 363.3 22.0 215 8-223 87-307 (307)
12 cd02894 GGTase-II Geranylgeran 100.0 1.4E-47 3E-52 339.7 22.2 210 10-223 76-287 (287)
13 PLN03201 RAB geranylgeranyl tr 100.0 8.4E-47 1.8E-51 337.9 20.8 212 11-226 83-294 (316)
14 cd02890 PTase Protein prenyltr 100.0 4.8E-45 1E-49 323.5 22.2 213 8-223 72-286 (286)
15 PLN02710 farnesyltranstransfer 100.0 3.7E-45 8E-50 335.1 20.5 216 9-227 117-393 (439)
16 cd02893 FTase Protein farnesyl 100.0 5.7E-44 1.2E-48 317.6 21.6 212 8-222 71-298 (299)
17 COG5029 CAL1 Prenyltransferase 100.0 8.7E-42 1.9E-46 292.9 18.6 215 10-227 101-318 (342)
18 KOG0366|consensus 100.0 2.4E-41 5.1E-46 283.1 17.0 213 10-226 92-304 (329)
19 KOG0367|consensus 100.0 1.3E-40 2.9E-45 283.0 18.7 218 7-227 99-323 (347)
20 KOG0365|consensus 100.0 1.2E-34 2.6E-39 251.0 15.3 214 10-227 146-373 (423)
21 cd00688 ISOPREN_C2_like This g 100.0 1.1E-29 2.4E-34 222.7 25.6 249 8-271 22-287 (300)
22 cd00688 ISOPREN_C2_like This g 99.9 7.9E-26 1.7E-30 198.3 21.3 208 10-222 79-299 (300)
23 cd02889 SQCY Squalene cyclase 99.9 1.5E-21 3.4E-26 177.3 20.1 240 11-265 23-320 (348)
24 TIGR03463 osq_cycl 2,3-oxidosq 99.9 2.8E-21 6E-26 187.4 19.2 181 30-212 397-616 (634)
25 PF13249 Prenyltrans_2: Prenyl 99.9 7.8E-22 1.7E-26 150.7 8.9 109 39-153 1-113 (113)
26 cd02892 SQCY_1 Squalene cyclas 99.9 5.5E-20 1.2E-24 179.3 20.7 242 9-265 304-606 (634)
27 TIGR01507 hopene_cyclase squal 99.8 3.5E-20 7.5E-25 179.7 18.3 190 10-203 377-599 (635)
28 TIGR01507 hopene_cyclase squal 99.8 1.5E-19 3.2E-24 175.3 22.4 240 10-264 313-599 (635)
29 cd02892 SQCY_1 Squalene cyclas 99.8 3.5E-20 7.6E-25 180.6 17.1 190 12-203 373-605 (634)
30 TIGR03463 osq_cycl 2,3-oxidosq 99.8 1.2E-19 2.6E-24 176.0 20.6 239 12-265 305-606 (634)
31 cd02889 SQCY Squalene cyclase 99.8 9.3E-20 2E-24 165.6 18.5 211 36-264 2-261 (348)
32 PLN02993 lupeol synthase 99.8 7.2E-20 1.6E-24 178.2 17.3 199 12-212 487-734 (763)
33 PLN03012 Camelliol C synthase 99.8 8.6E-20 1.9E-24 177.3 17.5 182 29-212 509-734 (759)
34 COG1689 Uncharacterized protei 99.8 9.5E-20 2.1E-24 149.6 14.7 204 32-264 5-250 (274)
35 TIGR01787 squalene_cyclas squa 99.8 3.7E-19 8E-24 172.4 21.1 241 10-265 293-590 (621)
36 TIGR01787 squalene_cyclas squa 99.8 1.1E-18 2.4E-23 169.1 17.1 173 30-204 385-590 (621)
37 PF13249 Prenyltrans_2: Prenyl 99.8 2.5E-19 5.4E-24 136.8 8.1 109 90-202 1-113 (113)
38 PLN03012 Camelliol C synthase 99.8 2E-17 4.3E-22 161.0 19.9 241 10-263 415-722 (759)
39 PLN02993 lupeol synthase 99.8 1.2E-17 2.6E-22 162.7 17.6 241 10-263 415-722 (763)
40 COG1689 Uncharacterized protei 99.7 1.2E-15 2.6E-20 125.6 15.0 203 5-224 27-272 (274)
41 cd02897 A2M_2 Proteins similar 99.6 4.9E-14 1.1E-18 125.4 19.9 236 2-264 12-279 (292)
42 cd02896 complement_C3_C4_C5 Pr 99.6 2E-14 4.4E-19 128.2 17.2 233 2-263 12-283 (297)
43 PF00432 Prenyltrans: Prenyltr 99.5 7.7E-14 1.7E-18 88.5 4.7 43 133-175 2-44 (44)
44 cd02896 complement_C3_C4_C5 Pr 99.5 1.9E-12 4.2E-17 115.5 15.4 180 8-203 76-284 (297)
45 cd02897 A2M_2 Proteins similar 99.5 5.9E-12 1.3E-16 112.0 18.1 180 9-204 76-280 (292)
46 PF00432 Prenyltrans: Prenyltr 99.4 5E-13 1.1E-17 84.7 3.6 44 180-224 1-44 (44)
47 PF13243 Prenyltrans_1: Prenyl 99.4 4.7E-13 1E-17 101.5 3.5 104 87-194 2-107 (109)
48 PF13243 Prenyltrans_1: Prenyl 99.3 1.4E-12 3E-17 98.9 5.6 105 36-146 2-107 (109)
49 KOG0497|consensus 99.3 4.8E-11 1E-15 113.1 12.4 170 27-201 506-720 (760)
50 cd02891 A2M_like Proteins simi 99.2 1.4E-09 3.1E-14 95.8 19.1 148 34-193 50-207 (282)
51 KOG0497|consensus 99.0 1.7E-08 3.7E-13 96.1 17.3 236 11-262 415-720 (760)
52 PF07678 A2M_comp: A-macroglob 98.9 6.7E-09 1.4E-13 90.3 10.4 194 40-263 4-230 (246)
53 PF07678 A2M_comp: A-macroglob 98.8 9.7E-08 2.1E-12 83.0 13.0 180 5-202 19-230 (246)
54 cd02891 A2M_like Proteins simi 98.8 5E-08 1.1E-12 86.0 10.9 109 86-194 51-172 (282)
55 COG1657 SqhC Squalene cyclase 98.1 6E-06 1.3E-10 77.8 7.0 163 34-201 282-479 (517)
56 COG1657 SqhC Squalene cyclase 97.8 6.8E-05 1.5E-09 70.7 8.0 158 48-215 248-435 (517)
57 TIGR02474 pec_lyase pectate ly 97.0 0.0094 2E-07 52.7 11.1 73 32-105 66-158 (290)
58 PLN02279 ent-kaur-16-ene synth 96.5 0.013 2.8E-07 58.8 9.1 168 36-226 76-286 (784)
59 KOG1366|consensus 96.4 0.057 1.2E-06 57.5 13.2 199 2-204 934-1198(1436)
60 TIGR02474 pec_lyase pectate ly 96.1 0.031 6.7E-07 49.4 8.2 110 86-195 69-221 (290)
61 PLN02592 ent-copalyl diphospha 96.0 0.069 1.5E-06 53.7 10.9 168 36-226 118-326 (800)
62 PF01122 Cobalamin_bind: Eukar 93.7 0.058 1.3E-06 48.5 3.1 111 19-152 192-311 (326)
63 COG1331 Highly conserved prote 92.9 2.5 5.3E-05 41.7 12.9 94 166-269 415-519 (667)
64 PF01122 Cobalamin_bind: Eukar 91.5 1.3 2.7E-05 40.0 8.7 85 60-152 184-278 (326)
65 PF05817 Ribophorin_II: Oligos 89.4 11 0.00024 37.4 13.8 133 9-176 45-178 (636)
66 PF10022 DUF2264: Uncharacteri 88.8 19 0.00042 33.1 14.5 167 8-177 150-347 (361)
67 PF07944 DUF1680: Putative gly 88.2 10 0.00022 36.7 12.5 92 163-260 238-344 (520)
68 PLN02592 ent-copalyl diphospha 88.0 5.3 0.00011 40.6 10.7 116 42-178 258-377 (800)
69 PF05817 Ribophorin_II: Oligos 87.4 13 0.00027 37.0 12.8 127 9-146 120-250 (636)
70 PF09492 Pec_lyase: Pectic aci 87.2 2.6 5.6E-05 37.4 7.2 116 34-151 63-220 (289)
71 PF09492 Pec_lyase: Pectic aci 76.9 3.7 7.9E-05 36.5 4.2 109 86-194 64-215 (289)
72 PLN02279 ent-kaur-16-ene synth 76.0 31 0.00067 35.2 10.9 111 42-177 218-331 (784)
73 PF10022 DUF2264: Uncharacteri 62.8 1.3E+02 0.0028 27.8 15.1 204 11-225 106-346 (361)
74 TIGR01577 oligosac_amyl oligos 59.4 1.9E+02 0.0041 28.6 18.1 42 9-53 291-334 (616)
75 KOG1366|consensus 55.4 35 0.00077 37.2 7.0 88 113-201 945-1044(1436)
76 PF07470 Glyco_hydro_88: Glyco 44.9 98 0.0021 27.8 7.4 89 62-150 190-294 (336)
77 COG4289 Uncharacterized protei 41.8 2.9E+02 0.0063 25.6 11.1 167 6-178 161-355 (458)
78 cd00249 AGE AGE domain; N-acyl 41.1 2.4E+02 0.0052 25.4 9.5 115 86-200 16-158 (384)
79 TIGR01577 oligosac_amyl oligos 35.7 63 0.0014 31.9 5.0 37 63-104 298-334 (616)
80 PRK13617 psbV cytochrome c-550 33.6 59 0.0013 26.5 3.6 65 84-153 100-165 (170)
81 PF07470 Glyco_hydro_88: Glyco 32.9 78 0.0017 28.4 4.8 91 12-102 189-294 (336)
82 PF07944 DUF1680: Putative gly 32.0 85 0.0018 30.3 5.1 46 58-105 58-104 (520)
83 COG2373 Large extracellular al 31.5 3.4E+02 0.0074 30.4 9.8 125 86-226 1201-1332(1621)
84 COG5486 Predicted metal-bindin 30.0 52 0.0011 28.5 2.8 39 215-266 165-209 (283)
85 PRK13621 psbV cytochrome c-550 28.3 1.2E+02 0.0027 24.7 4.6 52 86-153 109-163 (170)
86 TIGR01535 glucan_glucosid gluc 27.1 6.5E+02 0.014 25.2 10.8 142 116-261 300-453 (648)
87 TIGR03046 PS_II_psbV2 photosys 26.5 1.1E+02 0.0024 24.6 4.0 54 131-202 95-152 (155)
88 TIGR01535 glucan_glucosid gluc 24.7 99 0.0021 30.9 4.2 85 10-97 292-386 (648)
89 PF15144 DUF4576: Domain of un 23.4 79 0.0017 22.2 2.3 26 131-156 55-80 (88)
90 TIGR03046 PS_II_psbV2 photosys 22.8 2E+02 0.0044 23.1 4.9 55 86-153 98-152 (155)
91 PRK13621 psbV cytochrome c-550 21.7 1.7E+02 0.0036 24.0 4.2 56 130-202 105-163 (170)
92 PRK13619 psbV cytochrome c-550 20.1 1.7E+02 0.0036 23.7 3.8 66 83-153 91-156 (160)
93 PF05382 Amidase_5: Bacterioph 20.1 2.4E+02 0.0053 22.3 4.8 70 181-266 1-70 (145)
No 1
>KOG0365|consensus
Probab=100.00 E-value=6e-75 Score=500.97 Aligned_cols=268 Identities=57% Similarity=1.040 Sum_probs=257.4
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA 80 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~ 80 (271)
||++|+.+|.+|.|++||.+++|++|+..+++...+++|+||..||.|.|||++.||+.+|+..||+||.+|.++|.+++
T Consensus 88 Lp~~~~~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A 167 (423)
T KOG0365|consen 88 LPSQYTCLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDA 167 (423)
T ss_pred CCCcccccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHH
Confidence 79999999999999999999999999999998889999999999999999999999999999999999999999999888
Q ss_pred CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672 81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH 160 (271)
Q Consensus 81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~ 160 (271)
++.||++++++||.++++|||||..+.+||.|+|.+|||+++..++|++.++.++.+.+||.+||+++|||++.|+.|+|
T Consensus 168 ~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAH 247 (423)
T KOG0365|consen 168 YSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAH 247 (423)
T ss_pred HHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccc
Q psy15672 161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWL 240 (271)
Q Consensus 161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~ 240 (271)
++|||||+|+|++|++.+..|.+++.+|...||..++|||+||.||++|.|||||++++..||+..+...+.. -.+++
T Consensus 248 GGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s--~~~~~ 325 (423)
T KOG0365|consen 248 GGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHS--LEHLL 325 (423)
T ss_pred CCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHHHhcccccc--hhhhh
Confidence 9999999999999999988999999999999999889999999999999999999999999999987654431 13578
Q ss_pred cCHHHHHHHHHhhhCCCCCCcCCCCCCCCC
Q psy15672 241 FHHRALQEYILICCQHFNGGLLDKPENMVA 270 (271)
Q Consensus 241 ~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d 270 (271)
+|.++|++|||.|||.+.|||+|||++|+|
T Consensus 326 F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~D 355 (423)
T KOG0365|consen 326 FNKEALQEYILLCCQSPSGGLRDKPGKPRD 355 (423)
T ss_pred cCHHHHHHHHHhhccCCCCCccCCCCCCcc
Confidence 999999999999999999999999999998
No 2
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1.4e-73 Score=522.18 Aligned_cols=270 Identities=51% Similarity=0.951 Sum_probs=249.8
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA 80 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~ 80 (271)
||+.|+++|.+|+|++||+|++|.+|+.++++++++++++||.+||+++|||++.+++++|+.+||+|+++|.+||.++.
T Consensus 60 lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~ 139 (439)
T PLN02710 60 LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERA 139 (439)
T ss_pred CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchh
Confidence 79999999999999999999999999998888899999999999999999999999999999999999999999998655
Q ss_pred CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672 81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH 160 (271)
Q Consensus 81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~ 160 (271)
++.+|++++++||+++|++||||...+++|+|+|+||||++++.+++..+.++++++++||++||++||||+++|++|+|
T Consensus 140 l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH 219 (439)
T PLN02710 140 LSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAH 219 (439)
T ss_pred hcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCc
Confidence 67899999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCC-------
Q psy15672 161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDT------- 233 (271)
Q Consensus 161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~------- 233 (271)
++||||||++|.+||+.+.+|.+++++||+.||.. +|||+|||||.+|+|||||++++|.||+.......+.
T Consensus 220 ~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~-~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~ 298 (439)
T PLN02710 220 GGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSS 298 (439)
T ss_pred hHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCc-CCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccc
Confidence 99999999999999998888999999999999985 8999999999999999999999999999864321000
Q ss_pred ------------------------------------C----CCCccccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672 234 ------------------------------------C----LDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVAS 271 (271)
Q Consensus 234 ------------------------------------~----~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~ 271 (271)
+ .....++|.++|++||+.|||.++|||+|+||+++|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~ 376 (439)
T PLN02710 299 IMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDY 376 (439)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCch
Confidence 0 0112368999999999988888999999999999995
No 3
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=4.6e-70 Score=484.99 Aligned_cols=271 Identities=55% Similarity=0.994 Sum_probs=249.9
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA 80 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~ 80 (271)
+|..|+++|.+|+|++||+|++|.+|+.++++.+++++++||++||+++|||++.+++++|+.+||+|+++|.+++.++.
T Consensus 15 ~p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~ 94 (299)
T cd02893 15 LPSSFTSLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEA 94 (299)
T ss_pred CCccccccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchh
Confidence 59999999999999999999999999987777789999999999999999999999999999999999999999997544
Q ss_pred CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672 81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH 160 (271)
Q Consensus 81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~ 160 (271)
++.+|++++++||+++|++||||...+++|+|+|+||||++++.+++..++++++++++||++||++||||+++|++|+|
T Consensus 95 ~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h 174 (299)
T cd02893 95 YDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAH 174 (299)
T ss_pred hhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCC
Confidence 56789999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCC-CCCCcc
Q psy15672 161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDT-CLDGHW 239 (271)
Q Consensus 161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~-~~~~~~ 239 (271)
++||||||++|.++|..+.+|.+++++||++||.+.+|||+|||||.+|+|||||++++|++|+..++.+++. -.+..+
T Consensus 175 ~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~ 254 (299)
T cd02893 175 GGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGT 254 (299)
T ss_pred ccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999888899999999999999878999999999999999999999999999886543210 011246
Q ss_pred ccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672 240 LFHHRALQEYILICCQHFNGGLLDKPENMVAS 271 (271)
Q Consensus 240 ~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~ 271 (271)
++|.++|++||+.++|+.+|||+|+|++++|+
T Consensus 255 ~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~ 286 (299)
T cd02893 255 LFDQEALQEYILLCCQSEEGGLRDKPGKPRDF 286 (299)
T ss_pred ccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCc
Confidence 79999999999965567799999999999996
No 4
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=6e-67 Score=466.35 Aligned_cols=255 Identities=33% Similarity=0.594 Sum_probs=236.9
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcC----CCCCCCCCCCC----------CCCchHH
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPL--SSADKSCVVNFLSQCQ----SPNGGFGGGPG----------QDPHIAA 64 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~--~~~~~~~~i~~l~~~q----~~dGGF~~~~~----------~~~~~~~ 64 (271)
||++|+++|++|+|++||+|++|.+|+.+. +..+++++++||++|| +++|||++.++ +++|+++
T Consensus 15 lp~~~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ 94 (307)
T cd02895 15 LPSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAM 94 (307)
T ss_pred CCchhhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHH
Confidence 799999999999999999999999999876 5788999999999999 99999999775 4799999
Q ss_pred HHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeeccc---CCCCChhHHHHHHHHHHHhCcCC--hhhHHHHHH
Q psy15672 65 TYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHD---GGEVDIRGVYCALCVALLTQVYS--EDLFNNTRE 139 (271)
Q Consensus 65 Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~---~~e~d~~~ty~a~~~l~ll~~~~--~~~~~~~~~ 139 (271)
||+|+++|.+|+++ .+.+|++++++||+++|++||||...+ ++|+|+|+||||++++.+++..+ ..+++++++
T Consensus 95 ty~Al~~L~lL~~~--~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~ 172 (307)
T cd02895 95 TYFALLSLLILGDD--LSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLID 172 (307)
T ss_pred HHHHHHHHHHhCCc--hhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHH
Confidence 99999999999974 346899999999999999999999886 78999999999999999999775 467899999
Q ss_pred HHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC---ccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhh
Q psy15672 140 WLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH---LCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQ 216 (271)
Q Consensus 140 ~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~---~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~ 216 (271)
||++||++||||+..|+.|+|+++||||+++|.+|+..+ .++.+++++||++||+. +|||+|||+|.+|+|||||+
T Consensus 173 ~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~-~GGF~gr~~k~~D~cysfw~ 251 (307)
T cd02895 173 YIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVS-GTGFNGRPNKPADTCYSFWV 251 (307)
T ss_pred HHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCC-CCCcCCCCCCCCccchhhHH
Confidence 999999999999999999999999999999999999975 67999999999999998 79999999999999999999
Q ss_pred hhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhC-CCCCCcCCCCCCCCCC
Q psy15672 217 GGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQ-HFNGGLLDKPENMVAS 271 (271)
Q Consensus 217 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q-~~~GGf~~~p~~~~d~ 271 (271)
+++|.+|+.. .++|.+++++||+. || ..+|||+++|+++||+
T Consensus 252 ~a~L~iL~~~------------~~id~~~l~~~l~~-~q~~~~GGf~~~p~~~~D~ 294 (307)
T cd02895 252 GASLKLLDAF------------QLIDFEKNRNYLLS-TQQSLVGGFAKNPDSHPDP 294 (307)
T ss_pred HHHHHHcCcc------------cccCHHHHHHHHHH-HcCCCCCCcCCCCCCCCCh
Confidence 9999999865 26899999999995 66 4599999999999996
No 5
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=3.4e-66 Score=462.99 Aligned_cols=253 Identities=34% Similarity=0.632 Sum_probs=236.8
Q ss_pred CCCCCccC--ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCC
Q psy15672 1 MSRVGNCL--DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTP 78 (271)
Q Consensus 1 ~p~~~~~~--d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~ 78 (271)
+|.+|++. |.+|++.+||+|++|++|+. .+..+++++++||++||+++|||++.+++++|+.+||+|+++|.+++.
T Consensus 23 ~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~-~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~- 100 (316)
T PLN03201 23 KKDSFESVVMEHLRMNGAYWGLTALDLLGK-LDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDR- 100 (316)
T ss_pred CCCCccccccccchHHHHHHHHHHHHHhCC-CccccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhh-
Confidence 47888776 88999999999999999997 456788999999999999999999999999999999999999999964
Q ss_pred CcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCC
Q psy15672 79 EAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFE 158 (271)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~e 158 (271)
++.+|++++++||+++|++||||...+++|.|+|+||||++++.+++..+..+++++++||++||++||||+.+|++|
T Consensus 101 --~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~e 178 (316)
T PLN03201 101 --LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGE 178 (316)
T ss_pred --hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCC
Confidence 467899999999999999999999989999999999999999999998777889999999999999999999999999
Q ss_pred CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCc
Q psy15672 159 AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGH 238 (271)
Q Consensus 159 s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~ 238 (271)
+|+++|||||++|+++|..+.+|.+++++||++||+. +|||+|||||.+|+|||||++++|.+|+..
T Consensus 179 sh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~-~GGf~grp~k~~D~cys~w~~a~L~ll~~~------------ 245 (316)
T PLN03201 179 SHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIIIDRV------------ 245 (316)
T ss_pred CccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCC-CCCcCCCCCCCCchHHHHHHHHHHHHhccc------------
Confidence 9999999999999999998888999999999999987 799999999999999999999999999875
Q ss_pred cccCHHHHHHHHHhhhCCC-CCCcCCCCCCCCCC
Q psy15672 239 WLFHHRALQEYILICCQHF-NGGLLDKPENMVAS 271 (271)
Q Consensus 239 ~~~~~~~l~~~il~~~Q~~-~GGf~~~p~~~~d~ 271 (271)
.++|.+++++||+. ||++ .|||+|+|++.+|+
T Consensus 246 ~~~d~~~l~~~i~~-~q~~~~GGf~~~p~~~~D~ 278 (316)
T PLN03201 246 HWIDKDKLAKFILD-CQDDENGGISDRPDDAVDV 278 (316)
T ss_pred cccCHHHHHHHHHH-HcCCCCCCcCCCcCCCCCh
Confidence 26899999999995 7875 89999999999996
No 6
>KOG0366|consensus
Probab=100.00 E-value=1.9e-65 Score=427.63 Aligned_cols=245 Identities=34% Similarity=0.650 Sum_probs=232.2
Q ss_pred ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672 9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPK 88 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~ 88 (271)
|.-|+.-+||++++|.+|++. ...++++++.||++||+++|||++.+++.+|+.+|++||++|.++.. ++.+|+++
T Consensus 43 EhlRmsgiYWg~tal~ll~~l-e~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~yds---i~~~d~d~ 118 (329)
T KOG0366|consen 43 EHLRMSGIYWGLTALDLLGQL-ERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDS---INVLDRDK 118 (329)
T ss_pred hHhhhcchhhhhhHHHHhccc-chhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcc---cccccHHH
Confidence 344667799999999999984 45679999999999999999999999999999999999999999975 46789999
Q ss_pred HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhh
Q psy15672 89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGF 168 (271)
Q Consensus 89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al 168 (271)
+++||..+|++||+|.+..++|.|+|++|||+++|++|+.++..+++++|+|+++|.|.||||+-+|+.|||++..||++
T Consensus 119 v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCv 198 (329)
T KOG0366|consen 119 VASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCV 198 (329)
T ss_pred HHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHH
Q psy15672 169 AALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQE 248 (271)
Q Consensus 169 ~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (271)
++|+++|+.+.+|.+.+-.||..||.+ .||.+|||.|.||+||+||++++|.|++.. +| +|+++|++
T Consensus 199 gaLai~~~L~~vd~d~lgwwlceRQ~~-sGGLNGRpeKlpDVCYSwWvlsSL~iigrl-----------~w-Id~ekL~~ 265 (329)
T KOG0366|consen 199 GALAITGKLHLVDRDLLGWWLCERQLP-SGGLNGRPEKLPDVCYSWWVLSSLAIIGRL-----------HW-IDREKLTK 265 (329)
T ss_pred HHHHHccchhhcCHHHHHHHHHhccCC-CCCCCCCcccCcchhhHHHHHhHHHHhhhh-----------hh-ccHHHHHH
Confidence 999999999999999999999999998 899999999999999999999999999987 45 89999999
Q ss_pred HHHhhhCC-CCCCcCCCCCCCCCC
Q psy15672 249 YILICCQH-FNGGLLDKPENMVAS 271 (271)
Q Consensus 249 ~il~~~Q~-~~GGf~~~p~~~~d~ 271 (271)
||+ .||. +.|||+|+|++.+|+
T Consensus 266 FIl-~cQd~~~GGfsDRpgd~~D~ 288 (329)
T KOG0366|consen 266 FIL-ACQDEETGGFSDRPGDEVDI 288 (329)
T ss_pred HHH-hcCCCCCCCcCCCCCCcccH
Confidence 999 6998 599999999999985
No 7
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-65 Score=438.34 Aligned_cols=256 Identities=40% Similarity=0.705 Sum_probs=239.7
Q ss_pred CCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcC
Q psy15672 2 SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAY 81 (271)
Q Consensus 2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~ 81 (271)
|..|.-.|.+|+|++||..++|.+++.......+|+.+.++++|+.+.|||++.+++.+|+.+|++|+++|.+++..+.+
T Consensus 44 ~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~ 123 (342)
T COG5029 44 PSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVL 123 (342)
T ss_pred cchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhcccccc
Confidence 55566678899999999999999999875567899999999999999999999999999999999999999999865556
Q ss_pred CcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCch
Q psy15672 82 NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHG 161 (271)
Q Consensus 82 ~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~ 161 (271)
+.++++.+.+||..+|+|||+|.....+|+|+|+.|+|+.+++++|..+.++++.+++||++||++||||+..|+.|+|+
T Consensus 124 ~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHa 203 (342)
T COG5029 124 SRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHA 203 (342)
T ss_pred chhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhcc
Confidence 78889999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhccCCccC-HHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccc
Q psy15672 162 GYTFCGFAALCLLKSEHLCD-IKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWL 240 (271)
Q Consensus 162 ~~T~~al~aL~llg~~~~~~-~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~ 240 (271)
+|||||+++|++|++.+..+ ++++++||.+||.+ .|||+||+||.+|+||+||++++|.||+.. .+
T Consensus 204 g~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~s-sgGl~GR~nKl~D~CYs~WvlsSl~il~~~------------~~ 270 (342)
T COG5029 204 GYTFCALAALALLGKLDKLSDVEKLIRWLAERQLS-SGGLNGRSNKLVDTCYSFWVLSSLAILGKL------------DF 270 (342)
T ss_pred chHHHHHHHHHHHhcccccchHHHHHHHHHHcccc-cCCcCCCcccCccchhhhhhcchHHhcchh------------hh
Confidence 99999999999999998877 79999999999999 899999999999999999999999999975 26
Q ss_pred cCHHHHHHHHHhhhCCCCCCcCCCCCCCCC
Q psy15672 241 FHHRALQEYILICCQHFNGGLLDKPENMVA 270 (271)
Q Consensus 241 ~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d 270 (271)
+|.+.|++||+.+||...|||+|+|++.+|
T Consensus 271 in~e~L~~yiL~c~q~~sGGfsdrp~~~~D 300 (342)
T COG5029 271 INTEELTDYILDCQQETSGGFSDRPGEEPD 300 (342)
T ss_pred cCHHHHHHHHHhhcccCCCCCCCCCcccch
Confidence 999999999997666679999999999998
No 8
>KOG0367|consensus
Probab=100.00 E-value=1.3e-64 Score=429.48 Aligned_cols=254 Identities=34% Similarity=0.656 Sum_probs=231.6
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCC--------CCCCCC----------CCCCCch
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPN--------GGFGGG----------PGQDPHI 62 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~d--------GGF~~~----------~~~~~~~ 62 (271)
||.+|+++|.+|++++||+|++|++|+.. +..+++.+++||++.|-.. -||.++ +.+++|+
T Consensus 27 lP~~y~shd~~R~tiafFaisGLd~L~~l-d~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~l 105 (347)
T KOG0367|consen 27 LPSPYQSHDTNRLTIAFFAISGLDLLDAL-DSVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHL 105 (347)
T ss_pred CCCcccccccchHHHHHHHHcchhhhhhh-hccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhH
Confidence 79999999999999999999999999984 4556999999999988421 357653 2257899
Q ss_pred HHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecc-cCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHH
Q psy15672 63 AATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVH-DGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWL 141 (271)
Q Consensus 63 ~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~-~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l 141 (271)
.+||+++++|.+||++ ++.+|++.+++++..+|++||+|... .++|+|+|++|||++++++++..+..+.++++.||
T Consensus 106 A~Ty~sl~~L~~lGdd--LsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI 183 (347)
T KOG0367|consen 106 AMTYTSLACLVILGDD--LSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYI 183 (347)
T ss_pred HHHHHHHHHHHHHcch--HhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHH
Confidence 9999999999999987 68999999999999999999999864 56799999999999999999988889999999999
Q ss_pred HHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccC--C----ccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhh
Q psy15672 142 TACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSE--H----LCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215 (271)
Q Consensus 142 ~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~--~----~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w 215 (271)
++||++||||+..|+.|+|+++||||||+|+++|+. + ..+++++++|+++||.. +|||+||+||++|+||+||
T Consensus 184 ~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~-sgGfqGR~NKp~DTCYaFW 262 (347)
T KOG0367|consen 184 RSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVS-SGGFQGRTNKPVDTCYAFW 262 (347)
T ss_pred HHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhc-cCCcCCCCCCCchhHHHHH
Confidence 999999999999999999999999999999999997 3 23589999999999998 8999999999999999999
Q ss_pred hhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCC-CCCcCCCCCCCCCC
Q psy15672 216 QGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHF-NGGLLDKPENMVAS 271 (271)
Q Consensus 216 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~-~GGf~~~p~~~~d~ 271 (271)
++++|++|++. |++|..++++||+ +||.+ .|||+|+|+..||+
T Consensus 263 igasLklL~~~------------~~~d~~~lr~fll-~~Q~~~iGGFsK~P~~~pD~ 306 (347)
T KOG0367|consen 263 IGASLKLLDAD------------WLIDKQVLRKFLL-STQDKLIGGFSKWPEEDPDL 306 (347)
T ss_pred HHHHHHHccch------------HhhhHHHHHHHHH-HhhhhhcCcccCCCccCchH
Confidence 99999999986 5899999999999 69998 69999999999984
No 9
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=7.3e-63 Score=437.47 Aligned_cols=253 Identities=35% Similarity=0.631 Sum_probs=236.6
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCC
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQ-SPNGGFGGGPGQDPHIAATYAAVNCLIILGTPE 79 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q-~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~ 79 (271)
+|.+|+++|++|+|++||+|++|.+|+.. +..+++++++||++|| +++|||++.++.++|+.+||+|+++|.+++.
T Consensus 18 ~~~~~~~~~~~r~~~~y~~l~~l~lL~~~-~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~-- 94 (287)
T cd02894 18 DDYEYILTEHLRMSGIYWGLTALDLLGQL-ERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDL-- 94 (287)
T ss_pred CChhhhhHHhhHHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhh--
Confidence 59999999999999999999999999974 4568999999999999 7799999999889999999999999999975
Q ss_pred cCCcCC--hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCC
Q psy15672 80 AYNCIN--RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGF 157 (271)
Q Consensus 80 ~~~~~~--~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~ 157 (271)
++.++ ++++++||+++|++||||...+++|+|+++||||++++.+++..+..+++++++||++||++||||+++|++
T Consensus 95 -~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~ 173 (287)
T cd02894 95 -LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGA 173 (287)
T ss_pred -hhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCC
Confidence 24567 999999999999999999999999999999999999999999877788999999999999999999999999
Q ss_pred CCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCC
Q psy15672 158 EAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDG 237 (271)
Q Consensus 158 es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~ 237 (271)
|+|+++|||||++|.++|+.+.++.+++++||++||++ +|||+|||+|.+|+|||||++++|.+|+..
T Consensus 174 es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~-~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~----------- 241 (287)
T cd02894 174 ESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLP-SGGLNGRPEKLPDVCYSWWVLSSLKIIGRL----------- 241 (287)
T ss_pred CCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCC-CCCcCCCCCCCCchhHhhHHHHHHHHhccc-----------
Confidence 99999999999999999998888999999999999998 899999999999999999999999999875
Q ss_pred ccccCHHHHHHHHHhhhCC-CCCCcCCCCCCCCCC
Q psy15672 238 HWLFHHRALQEYILICCQH-FNGGLLDKPENMVAS 271 (271)
Q Consensus 238 ~~~~~~~~l~~~il~~~Q~-~~GGf~~~p~~~~d~ 271 (271)
+ ++|.+++++||+ .||+ ++|||+++|++.+|+
T Consensus 242 ~-~~~~~~l~~~l~-~~q~~~~GGf~~~p~~~~D~ 274 (287)
T cd02894 242 H-WINKNKLKNFIL-ACQDEEDGGFADRPGNMVDV 274 (287)
T ss_pred c-ccCHHHHHHHHH-HhcCCCCCCcCCCCCCCCCh
Confidence 1 489999999999 5884 699999999999996
No 10
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=1.5e-60 Score=422.93 Aligned_cols=258 Identities=48% Similarity=0.871 Sum_probs=241.2
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCC
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQ-SPNGGFGGGPGQDPHIAATYAAVNCLIILGTPE 79 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q-~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~ 79 (271)
+|..+++.|++++|++||+|++|.+|+..++..+++++++||++|| ++||||+..++.++|+..||+|+.+|.++|.+
T Consensus 15 ~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~- 93 (286)
T cd02890 15 LPSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD- 93 (286)
T ss_pred CChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc-
Confidence 3788999999999999999999999999888889999999999999 99999999988999999999999999999973
Q ss_pred cCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCC
Q psy15672 80 AYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEA 159 (271)
Q Consensus 80 ~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es 159 (271)
..+.++++++++||.++|++||||...+++++|+++||||++++.++|....++++++++||++||++||||+.+|++|+
T Consensus 94 ~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es 173 (286)
T cd02890 94 ALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAES 173 (286)
T ss_pred ccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCC
Confidence 23567899999999999999999999889999999999999999999987778899999999999999999999999999
Q ss_pred chhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCcc
Q psy15672 160 HGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHW 239 (271)
Q Consensus 160 ~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~ 239 (271)
|+++||||+++|.++|..+.++++++++||++||+...|||+|||+|.+|+|||||++++|.+|+.. +
T Consensus 174 ~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~-----------~- 241 (286)
T cd02890 174 HGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRL-----------H- 241 (286)
T ss_pred CccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccc-----------c-
Confidence 9999999999999999988889999999999999984449999999999999999999999999875 1
Q ss_pred ccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672 240 LFHHRALQEYILICCQHFNGGLLDKPENMVAS 271 (271)
Q Consensus 240 ~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~ 271 (271)
++|.+++.+||+.++|+++|||+++|++++|+
T Consensus 242 ~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~ 273 (286)
T cd02890 242 LIDQEKLREYILSCQQSEVGGFSDKPGKPPDL 273 (286)
T ss_pred ccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCc
Confidence 38999999999965788899999999999996
No 11
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=6.5e-51 Score=363.26 Aligned_cols=215 Identities=27% Similarity=0.413 Sum_probs=201.0
Q ss_pred CccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCC---CCCCchHHHHHHHHHHHHhCCCCcCCcC
Q psy15672 8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGP---GQDPHIAATYAAVNCLIILGTPEAYNCI 84 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~---~~~~~~~~Ty~Av~~L~~lg~~~~~~~~ 84 (271)
.+.++++.+||++.+|.+|+.+.+..+++++++||++||++||||+..+ +.++|++.||+||.+|.+|+..+. +.+
T Consensus 87 ~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~-~~~ 165 (307)
T cd02895 87 YDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE-EDI 165 (307)
T ss_pred CCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc-ccc
Confidence 4789999999999999999986666789999999999999999999886 789999999999999999997421 257
Q ss_pred ChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC---hhhHHHHHHHHHHcccCCCCCCCCCCCCCch
Q psy15672 85 NRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS---EDLFNNTREWLTACQTYEGGFSGYPGFEAHG 161 (271)
Q Consensus 85 ~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~---~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~ 161 (271)
|++++++||.++|++||||+..+++|+|.++||||+++|.+++... .++.+++++||++||+.+|||+++|++++|+
T Consensus 166 d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~ 245 (307)
T cd02895 166 DKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADT 245 (307)
T ss_pred cHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCcc
Confidence 8999999999999999999999999999999999999999999765 6889999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHH
Q psy15672 162 GYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223 (271)
Q Consensus 162 ~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l 223 (271)
+||||++++|.+|++.+.+|++++.+||+.||++.+|||+++|+|.||+|||||++++|+++
T Consensus 246 cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 246 CYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred chhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 99999999999999988899999999999998766899999999999999999999999874
No 12
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1.4e-47 Score=339.71 Aligned_cols=210 Identities=23% Similarity=0.336 Sum_probs=195.3
Q ss_pred cChHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChH
Q psy15672 10 ASRAWICYWICHSLSLLDEPLSSAD--KSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRP 87 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~~~~~~--~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~ 87 (271)
.+++..+|.++.+|.+|+. .+..+ ++++++||++||++||||++.++.++|++.||+|+++|.+++.. +.++++
T Consensus 76 ~~~~~~t~~a~~~L~ll~~-~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~---~~i~~~ 151 (287)
T cd02894 76 DPHILSTLSAIQILALYDL-LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKL---DLIDVD 151 (287)
T ss_pred cchHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCc---chhhHH
Confidence 3578889999999999864 23334 89999999999999999999999999999999999999999863 567899
Q ss_pred HHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhh
Q psy15672 88 KLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCG 167 (271)
Q Consensus 88 ~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~a 167 (271)
++++||.++|++||||...+++|+|+++||||+++|.++|..+..+++++++||++||+++|||+++|++++|++||||+
T Consensus 152 ~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~ 231 (287)
T cd02894 152 KAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 231 (287)
T ss_pred HHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHH
Confidence 99999999999999999999999999999999999999998877889999999999999999999999999999999999
Q ss_pred hhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHH
Q psy15672 168 FAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223 (271)
Q Consensus 168 l~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l 223 (271)
+++|.+++..+..|.+++++||+++|+..+|||+++|+|.+|+|||||++++|++|
T Consensus 232 ~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 232 LSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred HHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 99999999987789999999999999655899999999999999999999999985
No 13
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=8.4e-47 Score=337.88 Aligned_cols=212 Identities=23% Similarity=0.340 Sum_probs=199.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHH
Q psy15672 11 SRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLK 90 (271)
Q Consensus 11 ~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~ 90 (271)
.|+..||.++.+|.+++. ++..+++++++||.++|++||||.+.++.+.|++.||+|+++|.+++.. +.+++++++
T Consensus 83 ~h~~~Ty~al~~L~ll~~-~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~---~~i~~~~~~ 158 (316)
T PLN03201 83 PHILYTLSAVQILALFDR-LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL---DKINVEKAV 158 (316)
T ss_pred ccHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc---chhHHHHHH
Confidence 699999999999999965 5667899999999999999999999888999999999999999999863 457899999
Q ss_pred HHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhH
Q psy15672 91 QFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAA 170 (271)
Q Consensus 91 ~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~a 170 (271)
+||.+||++||||+..|++|+|..+||||+++|.++|..+..+.+++++||.+||+.+|||++||++++|+|||||++++
T Consensus 159 ~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~ 238 (316)
T PLN03201 159 DYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSS 238 (316)
T ss_pred HHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999997766778899999999999999999999999999999999999
Q ss_pred HHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672 171 LCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 171 L~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~ 226 (271)
|.+|++.+.+|.+++.+||+.||++..|||+++|+|.+|+|||||.+++|++++..
T Consensus 239 L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~ 294 (316)
T PLN03201 239 LIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYP 294 (316)
T ss_pred HHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCC
Confidence 99999988899999999999999876899999999999999999999999999763
No 14
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=4.8e-45 Score=323.54 Aligned_cols=213 Identities=26% Similarity=0.343 Sum_probs=197.7
Q ss_pred CccChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCCh
Q psy15672 8 LDASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINR 86 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~ 86 (271)
.+.+++..||+++.+|.+|+.+ .+..+++++++||.++|++||||+..++.++|++.||+|+.+|.++|.. ...++
T Consensus 72 ~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~---~~~~~ 148 (286)
T cd02890 72 GQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNIL---TDIDK 148 (286)
T ss_pred CCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCc---hhhhH
Confidence 4789999999999999999974 4556789999999999999999999888999999999999999999974 35689
Q ss_pred HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCC-CCCCCCCCCCchhhhh
Q psy15672 87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG-GFSGYPGFEAHGGYTF 165 (271)
Q Consensus 87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dG-GF~~~p~~es~~~~T~ 165 (271)
+++++||.++|++||||+..+++|+|+++||||+++|.+++..+.++++++++||++||+.+| ||+++|++++|++|||
T Consensus 149 ~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~ 228 (286)
T cd02890 149 EKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSF 228 (286)
T ss_pred HHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhh
Confidence 999999999999999999999999999999999999999998878899999999999999988 9999999999999999
Q ss_pred hhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHH
Q psy15672 166 CGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223 (271)
Q Consensus 166 ~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l 223 (271)
|++++|.+++.....+.+++.+||+.+|+..+|||+++|++.+|+|||||++++|.++
T Consensus 229 ~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl~ 286 (286)
T cd02890 229 WVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSLL 286 (286)
T ss_pred HHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHcC
Confidence 9999999999987789999999999654444899999999999999999999999874
No 15
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=3.7e-45 Score=335.05 Aligned_cols=216 Identities=20% Similarity=0.272 Sum_probs=199.6
Q ss_pred ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCCh
Q psy15672 9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINR 86 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~ 86 (271)
+.+|+..+|++|++|.+|+.+ ++..+++++++||.+||++||||+..++.++|++.||+|++++.+|+.. ...+.
T Consensus 117 ~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l---~~~~~ 193 (439)
T PLN02710 117 QLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL---DDELV 193 (439)
T ss_pred CCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC---chhhH
Confidence 468999999999999999974 5567899999999999999999999999999999999999999999863 45679
Q ss_pred HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhh
Q psy15672 87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFC 166 (271)
Q Consensus 87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~ 166 (271)
+++++||.+||+.||||+..|+.|+|..+|||++++|.+||..+..+.+++++||.+||+.+|||++||++.+|+||+||
T Consensus 194 e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW 273 (439)
T PLN02710 194 KGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFW 273 (439)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHH
Confidence 99999999999999999999999999999999999999999877788999999999999999999999999999999999
Q ss_pred hhhHHHhhccCC-----------------------------------------------------------ccCHHHHHH
Q psy15672 167 GFAALCLLKSEH-----------------------------------------------------------LCDIKALLR 187 (271)
Q Consensus 167 al~aL~llg~~~-----------------------------------------------------------~~~~~~~~~ 187 (271)
++++|+++++.. ..|.+++.+
T Consensus 274 ~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~ 353 (439)
T PLN02710 274 QGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQ 353 (439)
T ss_pred HHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCHHHHHH
Confidence 999999998642 146779999
Q ss_pred HHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHh
Q psy15672 188 WTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSL 227 (271)
Q Consensus 188 wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~ 227 (271)
||+.||+...|||+.+|+|.+|.+|||+++++|+++++..
T Consensus 354 yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~~ 393 (439)
T PLN02710 354 YILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSA 393 (439)
T ss_pred HHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhcc
Confidence 9999976658999999999999999999999999999864
No 16
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=5.7e-44 Score=317.64 Aligned_cols=212 Identities=21% Similarity=0.279 Sum_probs=196.4
Q ss_pred CccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCC
Q psy15672 8 LDASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCIN 85 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~ 85 (271)
.+.+|+..||.++.+|.+|+.+ .+..+++++++||.+||++||||+..++.++|++.||+|+.++.+|+.. ...+
T Consensus 71 ~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~---~~~~ 147 (299)
T cd02893 71 GQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNIL---TDEL 147 (299)
T ss_pred CCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCC---chhh
Confidence 3478999999999999999974 4567899999999999999999999999999999999999999999863 4567
Q ss_pred hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccC-CCCCCCCCCCCCchhhh
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTY-EGGFSGYPGFEAHGGYT 164 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~-dGGF~~~p~~es~~~~T 164 (271)
.+++++||.+||++||||+..|+.|+|..+|||++++|.+++..+..+++++++||++||+. +|||++||++++|+|||
T Consensus 148 ~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys 227 (299)
T cd02893 148 FEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYS 227 (299)
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHH
Confidence 89999999999999999999999999999999999999999987778899999999999987 99999999999999999
Q ss_pred hhhhhHHHhhccC-------------CccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHH
Q psy15672 165 FCGFAALCLLKSE-------------HLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPL 222 (271)
Q Consensus 165 ~~al~aL~llg~~-------------~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~ 222 (271)
||++++|.++++. ..+|.+++.+||+.+|++.+|||+++|++.+|++||++++++|++
T Consensus 228 ~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Lsl 298 (299)
T cd02893 228 FWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLSI 298 (299)
T ss_pred HHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHhc
Confidence 9999999999974 346899999999988766689999999999999999999999986
No 17
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-42 Score=292.94 Aligned_cols=215 Identities=21% Similarity=0.307 Sum_probs=200.7
Q ss_pred cChHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChH
Q psy15672 10 ASRAWICYWICHSLSLLDE--PLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRP 87 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~ 87 (271)
.+|++-||++|++|.+++. -++..+|+.+.+||..||+|||+|...-..+.|.+..|.|+.+|.++|. ++..+.+
T Consensus 101 ~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~---~~~~~~e 177 (342)
T COG5029 101 DSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGD---LDKELFE 177 (342)
T ss_pred chhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhh---cchhhhH
Confidence 4689999999999999983 3566788899999999999999999877789999999999999999996 4567899
Q ss_pred HHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhh-HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhh
Q psy15672 88 KLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDL-FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFC 166 (271)
Q Consensus 88 ~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~-~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~ 166 (271)
.+++||++||+.||||+..|+.|+|..+||||+++|++++.++..+ ++++++||.++|-..|||++|+++.+|+||+||
T Consensus 178 ~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~W 257 (342)
T COG5029 178 GAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFW 257 (342)
T ss_pred HHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhh
Confidence 9999999999999999999999999999999999999999877666 799999999999999999999999999999999
Q ss_pred hhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHh
Q psy15672 167 GFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSL 227 (271)
Q Consensus 167 al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~ 227 (271)
++++|+++++...+|.+++.+||+.||++..|||+.||++.+|+.||.+.+++|++++..+
T Consensus 258 vlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~ 318 (342)
T COG5029 258 VLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKY 318 (342)
T ss_pred hcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhccCC
Confidence 9999999999889999999999999988778999999999999999999999999998764
No 18
>KOG0366|consensus
Probab=100.00 E-value=2.4e-41 Score=283.08 Aligned_cols=213 Identities=23% Similarity=0.322 Sum_probs=203.1
Q ss_pred cChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHH
Q psy15672 10 ASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKL 89 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~ 89 (271)
.+|+.-|..+|+.|++.+. ++..+++++++||...|++||+|.+..+.+-+.+.+|+||++|.+||. ++.++++++
T Consensus 92 d~hll~TlsAvQiL~~yds-i~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~---ld~~nve~a 167 (329)
T KOG0366|consen 92 DPHLLYTLSAVQILALYDS-INVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGK---LDTINVEKA 167 (329)
T ss_pred ChHHHHHHHHHHHHHHHcc-cccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhh---HHHhhHHHH
Confidence 3578889999999999986 466689999999999999999999999999999999999999999997 468899999
Q ss_pred HHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhh
Q psy15672 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFA 169 (271)
Q Consensus 90 ~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~ 169 (271)
++|+.+|.|-||||+..|+.|+|....||.+.+|+++|.++..+.+.+-.||..+|.+.||.++||.+.+|+||+||+++
T Consensus 168 Vd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvls 247 (329)
T KOG0366|consen 168 VDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLS 247 (329)
T ss_pred HHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHh
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672 170 ALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 170 aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~ 226 (271)
+|+++|+.+.+|.+++++||+.||....|||+.||+..+|+.||++.+|+|++|+..
T Consensus 248 SL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~ 304 (329)
T KOG0366|consen 248 SLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYP 304 (329)
T ss_pred HHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCC
Confidence 999999999999999999999999976899999999999999999999999999875
No 19
>KOG0367|consensus
Probab=100.00 E-value=1.3e-40 Score=283.01 Aligned_cols=218 Identities=26% Similarity=0.390 Sum_probs=204.6
Q ss_pred cCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCC-CCCCCchHHHHHHHHHHHHhCCCCcCCcCC
Q psy15672 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGG-PGQDPHIAATYAAVNCLIILGTPEAYNCIN 85 (271)
Q Consensus 7 ~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~-~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~ 85 (271)
.++.+|++++|.++..|.+||.+++..+++.++++|..||.+||.|... .+.++|++..|+|+++..+|+. .+.+|
T Consensus 99 ~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~---~s~iD 175 (347)
T KOG0367|consen 99 TYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDF---WSGID 175 (347)
T ss_pred CCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhcc---ccccC
Confidence 6789999999999999999999999999999999999999999999864 4678999999999999999985 37899
Q ss_pred hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC------ChhhHHHHHHHHHHcccCCCCCCCCCCCCC
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY------SEDLFNNTREWLTACQTYEGGFSGYPGFEA 159 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~------~~~~~~~~~~~l~~~q~~dGGF~~~p~~es 159 (271)
.++++.||+++|+.||||+..|++|+|..+||||+++|++++.+ +...++++++|+..+|..+|||.+||++.+
T Consensus 176 ~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~ 255 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPV 255 (347)
T ss_pred HHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCc
Confidence 99999999999999999999999999999999999999999865 123479999999999999999999999999
Q ss_pred chhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHh
Q psy15672 160 HGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSL 227 (271)
Q Consensus 160 ~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~ 227 (271)
|+||+||..++|.+|+....+|..++..||+.+|.+..|||++.|+..||+.|||..+++|+++++..
T Consensus 256 DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~~ 323 (347)
T KOG0367|consen 256 DTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEKG 323 (347)
T ss_pred hhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999888999999999999999878999999999999999999999999999864
No 20
>KOG0365|consensus
Probab=100.00 E-value=1.2e-34 Score=251.04 Aligned_cols=214 Identities=21% Similarity=0.258 Sum_probs=193.1
Q ss_pred cChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChH
Q psy15672 10 ASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRP 87 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~ 87 (271)
..|++-||.+|++|.+++.+ ++..+|+++.+||.++.++||||......+.|+++.|+|+.+-.+++-.. ..=-+
T Consensus 146 l~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~---deL~e 222 (423)
T KOG0365|consen 146 LPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPM---DELFE 222 (423)
T ss_pred chhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCc---HHHHH
Confidence 46899999999999999985 45678999999999999999999998889999999999999999998641 11256
Q ss_pred HHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHccc-CCCCCCCCCCCCCchhhhhh
Q psy15672 88 KLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQT-YEGGFSGYPGFEAHGGYTFC 166 (271)
Q Consensus 88 ~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~-~dGGF~~~p~~es~~~~T~~ 166 (271)
.+.+||.+||+.+|||+..|+.|.|..+||||+++|.+|+..+..+.+++.+|..++|. .+|||.+|.|+-.|+||+||
T Consensus 223 G~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFW 302 (423)
T KOG0365|consen 223 GTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFW 302 (423)
T ss_pred HHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHH
Confidence 79999999999999999999999999999999999999998888899999999999996 89999999999999999999
Q ss_pred hhhHHHhhccCC----------ccCHHHHHHHHHh-ccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHh
Q psy15672 167 GFAALCLLKSEH----------LCDIKALLRWTTN-RQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSL 227 (271)
Q Consensus 167 al~aL~llg~~~----------~~~~~~~~~wl~~-~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~ 227 (271)
.-|+..++.... ..|.+++.+||+- ||.+ .|||...|+|.+|..||.+++++|++.+++.
T Consensus 303 vga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~-~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y~ 373 (423)
T KOG0365|consen 303 VGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSP-SGGLRDKPGKPRDFYHTCYCLSGLSIAQHYS 373 (423)
T ss_pred hcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCC-CCCccCCCCCCcchhhhhhHhcchhHHhhhc
Confidence 999999875421 3488999999986 4766 8999999999999999999999999888763
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.97 E-value=1.1e-29 Score=222.74 Aligned_cols=249 Identities=31% Similarity=0.454 Sum_probs=212.2
Q ss_pred CccChHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCCCcC
Q psy15672 8 LDASRAWICYWICHSLSLLDEP-----LSSADKSCVVNFLSQCQSPNGGFGGGPGQ-DPHIAATYAAVNCLIILGTPEAY 81 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~~-----~~~~~~~~~i~~l~~~q~~dGGF~~~~~~-~~~~~~Ty~Av~~L~~lg~~~~~ 81 (271)
....+++.+++++.++..++.. .....++++++||.++|++||||+..++. .+++..|++++.+|..++.....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~ 101 (300)
T cd00688 22 LCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAV 101 (300)
T ss_pred CCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcccc
Confidence 3678999999999999999752 24567899999999999999999987665 78999999999999999863212
Q ss_pred CcCChHHHHHHHHhhcCCCCCeecccC-------CCCChhHHHHHHHHHHHhCcCC-hhhHHHHHHHHHHcccCCCCCCC
Q psy15672 82 NCINRPKLKQFLQRLKAPDGGFHVHDG-------GEVDIRGVYCALCVALLTQVYS-EDLFNNTREWLTACQTYEGGFSG 153 (271)
Q Consensus 82 ~~~~~~~~~~~l~~~q~~dGgf~~~~~-------~e~d~~~ty~a~~~l~ll~~~~-~~~~~~~~~~l~~~q~~dGGF~~ 153 (271)
....++++++||.++|++||+|..... ...++..|++++.+|.+++... .+.++++++||.++|+.||||
T Consensus 102 ~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~-- 179 (300)
T cd00688 102 DRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF-- 179 (300)
T ss_pred CHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--
Confidence 334588999999999999999987543 3688999999999999998653 467899999999999999999
Q ss_pred CCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC---CCCCCchhhhhhhhhHHHHHHHhhhc
Q psy15672 154 YPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT---NKLVDGCYSFWQGGLFPLIYRSLMKA 230 (271)
Q Consensus 154 ~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~---~k~~D~cyt~w~~~~L~~l~~~~~~~ 230 (271)
.+..+++...|+|++.+|..++.......+++++||+++|.+ +|||.... .+.+|+++++|++.+|..++.. .
T Consensus 180 ~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~-~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~---~ 255 (300)
T cd00688 180 GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRP-DGGWGEGRDRTNKLSDSCYTEWAAYALLALGKL---G 255 (300)
T ss_pred CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCC-CCCcCccccCCCCcCchHHHHHHHHHHHHHhhh---c
Confidence 677889999999999999999975445689999999999998 89998875 7899999999999999998763 0
Q ss_pred CCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672 231 GDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVAS 271 (271)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~ 271 (271)
.....+++.+||+ ..|+.+|||..+|...+|.
T Consensus 256 --------~~~~~~~~~~~L~-~~q~~~G~w~~~~~~~~~~ 287 (300)
T cd00688 256 --------DLEDAEKLVKWLL-SQQNEDGGFSSKPGKSYDT 287 (300)
T ss_pred --------CcccHHHHHHHHH-hccCCCCCcCcCCCCCCcc
Confidence 1246799999998 4899999999999887763
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.95 E-value=7.9e-26 Score=198.28 Aligned_cols=208 Identities=24% Similarity=0.309 Sum_probs=182.9
Q ss_pred cChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCC-------CCchHHHHHHHHHHHHhCCCCc
Q psy15672 10 ASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQ-------DPHIAATYAAVNCLIILGTPEA 80 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~-------~~~~~~Ty~Av~~L~~lg~~~~ 80 (271)
.+++|.++|++.+|..++.. .+...++++++||.++|++||||...... .+++..|++++.+|..++...
T Consensus 79 ~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~- 157 (300)
T cd00688 79 YPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLD- 157 (300)
T ss_pred CcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCC-
Confidence 67899999999999999874 45667899999999999999999865433 678999999999999998642
Q ss_pred CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCC---CC
Q psy15672 81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYP---GF 157 (271)
Q Consensus 81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p---~~ 157 (271)
...+++++++||.++|++||+| .++.+.|+..|++++.+|.+++......++++++||+++|..+|||...+ ..
T Consensus 158 -~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~ 234 (300)
T cd00688 158 -PDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNK 234 (300)
T ss_pred -CcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCC
Confidence 1346899999999999999999 56778999999999999999987555778999999999999999998775 67
Q ss_pred CCchhhhhhhhhHHHhhccC-CccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHH
Q psy15672 158 EAHGGYTFCGFAALCLLKSE-HLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPL 222 (271)
Q Consensus 158 es~~~~T~~al~aL~llg~~-~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~ 222 (271)
+++..+|++++.+|..++.. .....+++++||+++|.+ +|||.+++.+.+|+++|+|++.+|..
T Consensus 235 ~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~-~G~w~~~~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 235 LSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNE-DGGFSSKPGKSYDTQHTVFALLALSL 299 (300)
T ss_pred cCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCC-CCCcCcCCCCCCcchhhHHHHHHHhc
Confidence 78999999999999999874 345789999999999987 89999999999999999999998864
No 23
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.89 E-value=1.5e-21 Score=177.25 Aligned_cols=240 Identities=15% Similarity=0.130 Sum_probs=178.4
Q ss_pred ChHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------------CCCCCCCCCCC--CCCchHHHHHHHHHHH
Q psy15672 11 SRAWICYWICHSLSLLDE-PLSSADKSCVVNFLSQCQ--------------SPNGGFGGGPG--QDPHIAATYAAVNCLI 73 (271)
Q Consensus 11 ~~~~~~y~~l~~L~lL~~-~~~~~~~~~~i~~l~~~q--------------~~dGGF~~~~~--~~~~~~~Ty~Av~~L~ 73 (271)
+.++.+.+++.+|...+. +-....++++++||.+.| .++|||+.... ..++...|..++.+|.
T Consensus 23 ~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~ 102 (348)
T cd02889 23 SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALL 102 (348)
T ss_pred CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHH
Confidence 788999999999999886 223457899999999999 68999885432 2345568888888888
Q ss_pred HhCCCC----cCCcCChHHHHHHHHhhcCCCCCeecccC-------------------CCCChhHHHHHHHHHHHhCcCC
Q psy15672 74 ILGTPE----AYNCINRPKLKQFLQRLKAPDGGFHVHDG-------------------GEVDIRGVYCALCVALLTQVYS 130 (271)
Q Consensus 74 ~lg~~~----~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-------------------~e~d~~~ty~a~~~l~ll~~~~ 130 (271)
.++... ....-.++++++||.+.|++||+|..... ..++...|..++.+|..++...
T Consensus 103 ~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~ 182 (348)
T cd02889 103 RLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLY 182 (348)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcC
Confidence 777531 01122367899999999999999974311 1245566788888888777532
Q ss_pred h-------hhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC-ccCHHHHHHHHHhccCCCcCCcCC
Q psy15672 131 E-------DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH-LCDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 131 ~-------~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~-~~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
. +.++++++||+++|+.||||....+ ..+...|++++.+|..+|... ...++++++||+++|.+ +|||..
T Consensus 183 ~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~-dG~w~~ 260 (348)
T cd02889 183 PEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNP-DGGWGE 260 (348)
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCC-CCCcCC
Confidence 2 4678999999999999999964432 245556888999999988742 34578999999999998 899976
Q ss_pred C----------CCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCC
Q psy15672 203 R----------TNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP 265 (271)
Q Consensus 203 r----------~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p 265 (271)
. +...+|++.|.|++.+|...+.. + ....++..+||. .+|+++|||...+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~-----------~-~~~v~~a~~wL~-~~Q~~dG~f~~~~ 320 (348)
T cd02889 261 SYESYEDPSYAGGGRSTVVQTAWALLALMAAGEP-----------D-SEAVKRGVKYLL-NTQQEDGDWPQEE 320 (348)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHhcCCC-----------C-HHHHHHHHHHHH-HhcCCCCCcCCce
Confidence 3 23467889999998888775432 0 134577889988 6999999998743
No 24
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.88 E-value=2.8e-21 Score=187.39 Aligned_cols=181 Identities=17% Similarity=0.223 Sum_probs=143.8
Q ss_pred CChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHHHHHHHHHHHhCCCCcC---Cc--
Q psy15672 30 LSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAATYAAVNCLIILGTPEAY---NC-- 83 (271)
Q Consensus 30 ~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Av~~L~~lg~~~~~---~~-- 83 (271)
+++...+++++||+++|++||||+.... ..+++..|..+|.+|..++..... ..
T Consensus 397 ~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~ 476 (634)
T TIGR03463 397 VPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRIT 476 (634)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHH
Confidence 3445678899999999999999994321 356788999999999988753110 01
Q ss_pred CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHHHcccCCCCCCCC--------
Q psy15672 84 INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLTACQTYEGGFSGY-------- 154 (271)
Q Consensus 84 ~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~~~q~~dGGF~~~-------- 154 (271)
..++++++||++.|++||+|... ++...+..|++++.+|..+|.. ..+.++++++||+++|++||||+..
T Consensus 477 ~ai~rav~~L~~~Q~~dGsW~g~-Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~ 555 (634)
T TIGR03463 477 RAISRGVRFLRSRQREDGSFPGS-WGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQAR 555 (634)
T ss_pred HHHHHHHHHHHHhcCCCCCcccc-CCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCcccccc
Confidence 12678999999999999999764 3456677899999999998863 4577999999999999999999753
Q ss_pred --CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC--CCCCCchh
Q psy15672 155 --PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT--NKLVDGCY 212 (271)
Q Consensus 155 --p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~--~k~~D~cy 212 (271)
++.++++..|+|||.+|..+|..+...+++.++||+++|.+ +|||...+ +.++-.||
T Consensus 556 y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~-dG~W~~~~~~G~f~~~~~ 616 (634)
T TIGR03463 556 YVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQE-DGRWPREPINGVFFGTAM 616 (634)
T ss_pred ccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCC-CCCCCCCceeeeeCccee
Confidence 45578999999999999999976656789999999999998 89998654 44454444
No 25
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.86 E-value=7.8e-22 Score=150.70 Aligned_cols=109 Identities=30% Similarity=0.545 Sum_probs=92.3
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHH--HHHHHhhcCCCCCeeccc-CCCCChhH
Q psy15672 39 VNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKL--KQFLQRLKAPDGGFHVHD-GGEVDIRG 115 (271)
Q Consensus 39 i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~--~~~l~~~q~~dGgf~~~~-~~e~d~~~ 115 (271)
|+||+++|++||||+.. +..+++..|++|+.+|..++.. .+++++ ++||.++|++||+|...+ +.+.|+..
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~-----~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~ 74 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEE-----PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYT 74 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSH-----HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCc-----ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHH
Confidence 68999999999999987 7889999999999999999963 258888 999999999999999887 45789999
Q ss_pred HHHHHHHHHHhCcCCh-hhHHHHHHHHHHcccCCCCCCC
Q psy15672 116 VYCALCVALLTQVYSE-DLFNNTREWLTACQTYEGGFSG 153 (271)
Q Consensus 116 ty~a~~~l~ll~~~~~-~~~~~~~~~l~~~q~~dGGF~~ 153 (271)
|++++.++.+++.... +.++++++||+++|++||||++
T Consensus 75 t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 75 TYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 9999999999986643 6789999999999999999974
No 26
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.85 E-value=5.5e-20 Score=179.26 Aligned_cols=242 Identities=14% Similarity=0.091 Sum_probs=177.2
Q ss_pred ccChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCC--------------CCCCCCCC--CCCCCchHHHHHHHHH
Q psy15672 9 DASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQS--------------PNGGFGGG--PGQDPHIAATYAAVNC 71 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~--------------~dGGF~~~--~~~~~~~~~Ty~Av~~ 71 (271)
+.+.+|-+-+++.+|.-.+.. -.....+++++||.++|. +.|||+.. ....+++..|..++.+
T Consensus 304 ~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~A 383 (634)
T cd02892 304 NGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKA 383 (634)
T ss_pred CCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHH
Confidence 467799999999999877753 234467899999999996 35777754 2334677789999999
Q ss_pred HHHhCCCCc----CCcCChHHHHHHHHhhcCCCCCeecc-cC--------------------CCCChhHHHHHHHHHHHh
Q psy15672 72 LIILGTPEA----YNCINRPKLKQFLQRLKAPDGGFHVH-DG--------------------GEVDIRGVYCALCVALLT 126 (271)
Q Consensus 72 L~~lg~~~~----~~~~~~~~~~~~l~~~q~~dGgf~~~-~~--------------------~e~d~~~ty~a~~~l~ll 126 (271)
|..++.... ...-..+++++||.++|++||||... +. ..+.+..|..++.+|..+
T Consensus 384 L~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~ 463 (634)
T cd02892 384 LLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLF 463 (634)
T ss_pred HHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHh
Confidence 988875310 11123578999999999999999742 11 023445688888888888
Q ss_pred CcCCh-------hhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccC-C-ccCHHHHHHHHHhccCCCc
Q psy15672 127 QVYSE-------DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSE-H-LCDIKALLRWTTNRQMNFE 197 (271)
Q Consensus 127 ~~~~~-------~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~-~-~~~~~~~~~wl~~~Q~~~~ 197 (271)
+...+ +.++++++||+++|++||||.++-+ ......|++++.+|..+|.. . ...++++++||+++|++ +
T Consensus 464 ~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~-D 541 (634)
T cd02892 464 GKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNP-D 541 (634)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCC-C
Confidence 65432 3688999999999999999965443 34555688899999999875 2 34678999999999998 8
Q ss_pred CCcCCCC----------CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCC
Q psy15672 198 GGFQGRT----------NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP 265 (271)
Q Consensus 198 GGf~gr~----------~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p 265 (271)
|||...+ ...+++..|-|++.+|...+.. + ....++..+||+ .+|+++|||....
T Consensus 542 GgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~-----------~-~~~i~r~i~wL~-~~Q~~~G~w~~~~ 606 (634)
T cd02892 542 GGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP-----------D-SEAVERGIKYLL-NTQLPDGDWPQEE 606 (634)
T ss_pred CCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC-----------C-hHHHHHHHHHHH-HcCCCCCCCCCcc
Confidence 9997432 2346678888888777665432 1 134677899988 5899999997643
No 27
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.85 E-value=3.5e-20 Score=179.68 Aligned_cols=190 Identities=18% Similarity=0.217 Sum_probs=148.7
Q ss_pred cChHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCCCCCCCCCCC-------------------CCCchHHHHH
Q psy15672 10 ASRAWICYWICHSLSLLDEP---LSSADKSCVVNFLSQCQSPNGGFGGGPG-------------------QDPHIAATYA 67 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~---~~~~~~~~~i~~l~~~q~~dGGF~~~~~-------------------~~~~~~~Ty~ 67 (271)
.+.++.|-.+|.+|..++.+ ..+...+++++||+++|++||||+.... +.+++..|-.
T Consensus 377 ~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~ 456 (635)
T TIGR01507 377 YPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTAR 456 (635)
T ss_pred CCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHH
Confidence 46778888899999887521 2235788999999999999999975321 2356677889
Q ss_pred HHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHHHccc
Q psy15672 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLTACQT 146 (271)
Q Consensus 68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~~~q~ 146 (271)
++.+|...+... ....++++++||.+.|++||+|... ++..++..|..++.+|...|.. ..+.++++++||+++|+
T Consensus 457 ~l~al~~~g~~~--~~~~i~rav~~L~~~Q~~dG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~ 533 (635)
T TIGR01507 457 VLECLGSFGYDD--AWPVIERAVEYLKREQEPDGSWFGR-WGVNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQN 533 (635)
T ss_pred HHHHHHHhCCCc--hhHHHHHHHHHHHHccCCCCCCccC-CCCccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcC
Confidence 999998887532 2334788999999999999998544 3445566666777777777653 34678999999999999
Q ss_pred CCCCCCCC----------CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC
Q psy15672 147 YEGGFSGY----------PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR 203 (271)
Q Consensus 147 ~dGGF~~~----------p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr 203 (271)
+||||+.. +.++++...|.|||.+|...+..+...+++.++||.++|++ +|||.-.
T Consensus 534 ~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~-dG~W~e~ 599 (635)
T TIGR01507 534 PDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQRP-DGGWDEP 599 (635)
T ss_pred CCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC-CCCCCCc
Confidence 99999853 23468999999999999999976655789999999999998 8998754
No 28
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.85 E-value=1.5e-19 Score=175.34 Aligned_cols=240 Identities=17% Similarity=0.099 Sum_probs=174.8
Q ss_pred cChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-------------CCCCCCCC--CCCCCchHHHHHHHHHHHH
Q psy15672 10 ASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQS-------------PNGGFGGG--PGQDPHIAATYAAVNCLII 74 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~-------------~dGGF~~~--~~~~~~~~~Ty~Av~~L~~ 74 (271)
.+.+|-|-+++.+|...|..-+....+++.+||+++|. +.|||+.. +...|++..|..++.+|..
T Consensus 313 ~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~ 392 (635)
T TIGR01507 313 VSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNG 392 (635)
T ss_pred CCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHH
Confidence 56889999999999988853334468899999999983 24888765 3346899999999999988
Q ss_pred hCCCC-cCCcCChHHHHHHHHhhcCCCCCeecccC-------------------CCCChhHHHHHHHHHHHhCcC-Chhh
Q psy15672 75 LGTPE-AYNCINRPKLKQFLQRLKAPDGGFHVHDG-------------------GEVDIRGVYCALCVALLTQVY-SEDL 133 (271)
Q Consensus 75 lg~~~-~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-------------------~e~d~~~ty~a~~~l~ll~~~-~~~~ 133 (271)
++..+ .......+++++||.++|++||||..... ..++.-.|-.++.+|...+.. ....
T Consensus 393 ~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~ 472 (635)
T TIGR01507 393 LRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPV 472 (635)
T ss_pred cCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHH
Confidence 76321 11123578899999999999999964211 012333455566666665532 2467
Q ss_pred HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC-ccCHHHHHHHHHhccCCCcCCcCCCC--------
Q psy15672 134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH-LCDIKALLRWTTNRQMNFEGGFQGRT-------- 204 (271)
Q Consensus 134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~-~~~~~~~~~wl~~~Q~~~~GGf~gr~-------- 204 (271)
++++++||++.|++||||-++-+ ..+...|..++.+|...|... ...++++++||+++|++ +|||....
T Consensus 473 i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~-DGGWge~~~sy~~~~~ 550 (635)
T TIGR01507 473 IERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNP-DGGWGEDCRSYEDPAY 550 (635)
T ss_pred HHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCC-CCCCCCCCcccccccc
Confidence 89999999999999999743433 234445778888888877632 23578999999999998 89997421
Q ss_pred --CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCC
Q psy15672 205 --NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDK 264 (271)
Q Consensus 205 --~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~ 264 (271)
...+|+-.|.|++.+|...+... ....++..+||+ .+|+++|||...
T Consensus 551 ~g~g~s~~s~TA~AL~AL~~ag~~~------------~~~I~rav~~L~-~~Q~~dG~W~e~ 599 (635)
T TIGR01507 551 AGKGASTASQTAWALIALIAAGRAE------------SEAARRGVQYLV-ETQRPDGGWDEP 599 (635)
T ss_pred cCCCCCcHHHHHHHHHHHHHhCCCC------------cHHHHHHHHHHH-HhcCCCCCCCCc
Confidence 13578889999999998876431 124578889998 599999999764
No 29
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.84 E-value=3.5e-20 Score=180.64 Aligned_cols=190 Identities=19% Similarity=0.179 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHcCCC------CChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHH
Q psy15672 12 RAWICYWICHSLSLLDEP------LSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAA 64 (271)
Q Consensus 12 ~~~~~y~~l~~L~lL~~~------~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~ 64 (271)
..-.|-.+|.+|..++.. ++....+++++||+++|++||||..... ..+++..
T Consensus 373 d~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~ 452 (634)
T cd02892 373 DSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVEC 452 (634)
T ss_pred CcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcch
Confidence 344678888888888753 3345678899999999999999984311 1356778
Q ss_pred HHHHHHHHHHhCCCCcCC--c--CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC--ChhhHHHHH
Q psy15672 65 TYAAVNCLIILGTPEAYN--C--INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY--SEDLFNNTR 138 (271)
Q Consensus 65 Ty~Av~~L~~lg~~~~~~--~--~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~--~~~~~~~~~ 138 (271)
|..++.+|..++...... . ..++++++||++.|++||+|... .+...+..|+.++.+|..+|.. ..+.+++++
T Consensus 453 Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~-wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~ 531 (634)
T cd02892 453 TGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGR-WGVCYIYGTWFALEALAAAGEDYENSPYIRKAC 531 (634)
T ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCcccc-CCCccHHHHHHHHHHHHHhCCcccCcHHHHHHH
Confidence 999999999998642100 0 13778999999999999999654 3445566677788888888754 346789999
Q ss_pred HHHHHcccCCCCCCCC----------CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC
Q psy15672 139 EWLTACQTYEGGFSGY----------PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR 203 (271)
Q Consensus 139 ~~l~~~q~~dGGF~~~----------p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr 203 (271)
+||+++|++||||+.. ++.++++..|.|||.+|..+|..+...++++++||+++|.+ +|+|...
T Consensus 532 ~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~-~G~w~~~ 605 (634)
T cd02892 532 DFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLP-DGDWPQE 605 (634)
T ss_pred HHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCC-CCCCCCc
Confidence 9999999999999853 23568889999999999999886656789999999999998 8999763
No 30
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.84 E-value=1.2e-19 Score=176.04 Aligned_cols=239 Identities=16% Similarity=0.143 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCC--------------CCCCCCCCC--CCCCchHHHHHHHHHHH
Q psy15672 12 RAWICYWICHSLSLLDEPL--SSADKSCVVNFLSQCQS--------------PNGGFGGGP--GQDPHIAATYAAVNCLI 73 (271)
Q Consensus 12 ~~~~~y~~l~~L~lL~~~~--~~~~~~~~i~~l~~~q~--------------~dGGF~~~~--~~~~~~~~Ty~Av~~L~ 73 (271)
..|-|-+++.+|.--+..- .....+++++||+++|. +.|||+... ...++...|..++.+|.
T Consensus 305 ~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~ 384 (634)
T TIGR03463 305 SEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASL 384 (634)
T ss_pred CchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHH
Confidence 3499999999997765311 12356889999999995 458888753 34567778888888876
Q ss_pred HhCC---C--CcCCcCChHHHHHHHHhhcCCCCCeecccC---------------------CCCChhHHHHHHHHHHHhC
Q psy15672 74 ILGT---P--EAYNCINRPKLKQFLQRLKAPDGGFHVHDG---------------------GEVDIRGVYCALCVALLTQ 127 (271)
Q Consensus 74 ~lg~---~--~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~---------------------~e~d~~~ty~a~~~l~ll~ 127 (271)
.+.. . +.......+++++||+++|++||||..... +.+.+-.|-.++.+|..++
T Consensus 385 ~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~ 464 (634)
T TIGR03463 385 VLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWR 464 (634)
T ss_pred HHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHh
Confidence 6432 1 001112356799999999999999994321 1233445556666666654
Q ss_pred cCC--------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccC-CccCHHHHHHHHHhccCCCcC
Q psy15672 128 VYS--------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSE-HLCDIKALLRWTTNRQMNFEG 198 (271)
Q Consensus 128 ~~~--------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~-~~~~~~~~~~wl~~~Q~~~~G 198 (271)
... ...++++++||++.|++||||.++-+ ......|++|+.+|..+|.. ....++++++||+++|++ +|
T Consensus 465 ~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~-DG 542 (634)
T TIGR03463 465 KHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRA-DG 542 (634)
T ss_pred hcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCC-CC
Confidence 322 23578999999999999999976533 23444589999999999874 334578999999999998 89
Q ss_pred CcCCCC----------CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCC
Q psy15672 199 GFQGRT----------NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP 265 (271)
Q Consensus 199 Gf~gr~----------~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p 265 (271)
||.++. +..+.+..|.|++.+|...+... ....++..+||+ ..|+++|||...+
T Consensus 543 gWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~------------~~~i~rgi~~L~-~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 543 GWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGG------------HDAVQRGVAWLR-SRQQEDGRWPREP 606 (634)
T ss_pred CccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcC------------CHHHHHHHHHHH-HhCCCCCCCCCCc
Confidence 997642 33577888999999998876421 123577889998 5899999997754
No 31
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.84 E-value=9.3e-20 Score=165.58 Aligned_cols=211 Identities=20% Similarity=0.211 Sum_probs=148.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc--------------CCCC
Q psy15672 36 SCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK--------------APDG 101 (271)
Q Consensus 36 ~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q--------------~~dG 101 (271)
++.++||.+.|++||||...+ +++..|..++.+|...|.... ....++++++||.+.| .++|
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~-~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G 77 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPE-FDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG 77 (348)
T ss_pred chHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence 578999999999999998764 889999999999999886211 2234789999999999 7899
Q ss_pred CeecccC--CCCChhHHHHHHHHHHHhCcC-------ChhhHHHHHHHHHHcccCCCCCCCC-CC---------------
Q psy15672 102 GFHVHDG--GEVDIRGVYCALCVALLTQVY-------SEDLFNNTREWLTACQTYEGGFSGY-PG--------------- 156 (271)
Q Consensus 102 gf~~~~~--~e~d~~~ty~a~~~l~ll~~~-------~~~~~~~~~~~l~~~q~~dGGF~~~-p~--------------- 156 (271)
||..... +..|...|-.++.+|..++.. ....++++++||+++|+.||||... +.
T Consensus 78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~ 157 (348)
T cd02889 78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGD 157 (348)
T ss_pred cCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcC
Confidence 9986432 123332333444444444322 3467889999999999999999742 21
Q ss_pred ---CCCchhhhhhhhhHHHhhccCCc-------cCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672 157 ---FEAHGGYTFCGFAALCLLKSEHL-------CDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 157 ---~es~~~~T~~al~aL~llg~~~~-------~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~ 226 (271)
..++...|..+|.+|..++.... ..+++.++||...|.+ +|||.++.+. ..+..+.+++.+|...+..
T Consensus 158 ~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~-dG~w~~~~~~-~~~y~ta~a~~aL~~~g~~ 235 (348)
T cd02889 158 IMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEP-DGSWYGRWGV-CFIYGTWFALEALAAAGED 235 (348)
T ss_pred CccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCC-CCCccccCCC-cchHHHHHHHHHHHHcCCC
Confidence 12456679999999999987532 2367899999999998 8999765432 2233344555555554321
Q ss_pred hhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCC
Q psy15672 227 LMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDK 264 (271)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~ 264 (271)
.+....++..+||+ .+|+++|||...
T Consensus 236 -----------~~~~~~~~~~~~L~-~~Q~~dG~w~~~ 261 (348)
T cd02889 236 -----------ENSPYVRKACDWLL-SKQNPDGGWGES 261 (348)
T ss_pred -----------cCcHHHHHHHHHHH-HccCCCCCcCCc
Confidence 01245678889998 599999999764
No 32
>PLN02993 lupeol synthase
Probab=99.84 E-value=7.2e-20 Score=178.15 Aligned_cols=199 Identities=18% Similarity=0.177 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHH
Q psy15672 12 RAWICYWICHSLSLLD-----EPLSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAAT 65 (271)
Q Consensus 12 ~~~~~y~~l~~L~lL~-----~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~T 65 (271)
..+..--++..|..+. ..++++...++++||+++||+||||+.... ..+.+..|
T Consensus 487 dTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT 566 (763)
T PLN02993 487 CTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECT 566 (763)
T ss_pred chHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHH
Confidence 3344444444555443 233445678899999999999999986431 14667789
Q ss_pred HHHHHHHHHhCCCCc-C--Cc--CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC--hhhHHHHH
Q psy15672 66 YAAVNCLIILGTPEA-Y--NC--INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS--EDLFNNTR 138 (271)
Q Consensus 66 y~Av~~L~~lg~~~~-~--~~--~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~--~~~~~~~~ 138 (271)
-.+|.+|.+++.... . .. ..++++++||++.|++||||... ++...+..|++|+.+|...|... .+.+++++
T Consensus 567 ~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv 645 (763)
T PLN02993 567 SAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGV 645 (763)
T ss_pred HHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 999999999874210 1 11 23678999999999999999864 55677778999999998888652 36799999
Q ss_pred HHHHHcccCCCCCCCCC------------CCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccCCCcCCcCCC-
Q psy15672 139 EWLTACQTYEGGFSGYP------------GFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQMNFEGGFQGR- 203 (271)
Q Consensus 139 ~~l~~~q~~dGGF~~~p------------~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~~~~GGf~gr- 203 (271)
+||+++|++||||+..- +..|++..|.||+.+|...|..+. ..+++.++||+++|.+ +|+|.-.
T Consensus 646 ~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~-~G~W~q~~ 724 (763)
T PLN02993 646 HFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLE-NGDFPQQE 724 (763)
T ss_pred HHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCC-CCCCCCcc
Confidence 99999999999998642 245888999999999999997543 2478999999999998 7887643
Q ss_pred -CCCCCCchh
Q psy15672 204 -TNKLVDGCY 212 (271)
Q Consensus 204 -~~k~~D~cy 212 (271)
.+.++-.||
T Consensus 725 ~~G~F~~~~~ 734 (763)
T PLN02993 725 ILGAFMNTCM 734 (763)
T ss_pred eeceECccce
Confidence 334555554
No 33
>PLN03012 Camelliol C synthase
Probab=99.84 E-value=8.6e-20 Score=177.30 Aligned_cols=182 Identities=18% Similarity=0.187 Sum_probs=137.7
Q ss_pred CCChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHHHHHHHHHHHhCCCCcC---C--
Q psy15672 29 PLSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAATYAAVNCLIILGTPEAY---N-- 82 (271)
Q Consensus 29 ~~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Av~~L~~lg~~~~~---~-- 82 (271)
.++++...++++||+++|++||||+.... ..+....|-.+|.+|.+++..... .
T Consensus 509 ~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i 588 (759)
T PLN03012 509 KMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEI 588 (759)
T ss_pred cccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhh
Confidence 34556778899999999999999975432 245566788899999888752110 1
Q ss_pred cCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC--ChhhHHHHHHHHHHcccCCCCCCCCC-----
Q psy15672 83 CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY--SEDLFNNTREWLTACQTYEGGFSGYP----- 155 (271)
Q Consensus 83 ~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~--~~~~~~~~~~~l~~~q~~dGGF~~~p----- 155 (271)
...++++++||++.|++||||....+. ..+..|..|+.+|...|.. +.+.++++++||++.|++||||++.-
T Consensus 589 ~~~i~rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~ 667 (759)
T PLN03012 589 NAFIKKAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPK 667 (759)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCC
Confidence 123678999999999999999876432 3344677788888888763 33679999999999999999999742
Q ss_pred -------CCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccCCCcCCcCCC--CCCCCCchh
Q psy15672 156 -------GFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQMNFEGGFQGR--TNKLVDGCY 212 (271)
Q Consensus 156 -------~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~~~~GGf~gr--~~k~~D~cy 212 (271)
+..|++..|+||+.+|...|..+. ..+++.++||+++|.+ +|+|.-. .+.++-.||
T Consensus 668 ~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~-dG~W~q~~~~G~F~~~~~ 734 (759)
T PLN03012 668 KIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLE-NGDFPQQEATGAFLKNCL 734 (759)
T ss_pred ccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccC-CCCCCCceeeeeeccceE
Confidence 235899999999999999998543 2479999999999998 8998743 233444444
No 34
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.83 E-value=9.5e-20 Score=149.60 Aligned_cols=204 Identities=16% Similarity=0.156 Sum_probs=156.8
Q ss_pred hhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhh-cCCCCCeecc----
Q psy15672 32 SADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRL-KAPDGGFHVH---- 106 (271)
Q Consensus 32 ~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~-q~~dGgf~~~---- 106 (271)
..+++++++||..+|++||||+.....+..+..||+||.++.+||. +.+.+|+.++||.++ |..-+++...
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~----evPr~EktiefL~d~~qt~~~~~a~~~~~l 80 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGH----EVPRKEKTIEFLYDQMQTAGVGVAMAIEFL 80 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCC----cCchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4578999999999999999999876655557999999999999996 477899999999994 4444444321
Q ss_pred ------------------------------cC------CCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCC
Q psy15672 107 ------------------------------DG------GEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGG 150 (271)
Q Consensus 107 ------------------------------~~------~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGG 150 (271)
.+ ....++.||++..+|.+.|.. ..+...+||++.|+.+|+
T Consensus 81 ~~lg~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~ 157 (274)
T COG1689 81 RILGAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGI 157 (274)
T ss_pred HHhcccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhcc
Confidence 01 123478999999999999843 355666788888888877
Q ss_pred CCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCC-CCchhhhhhhhhHHHHHHHhhh
Q psy15672 151 FSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKL-VDGCYSFWQGGLFPLIYRSLMK 229 (271)
Q Consensus 151 F~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~-~D~cyt~w~~~~L~~l~~~~~~ 229 (271)
+.+---..+....||.|+-.|...+. .+.+..|=+.|-. .|||+..|+.. |-.--||+++.+|.+|+..
T Consensus 158 g~~YGv~~pnt~~t~~aly~l~~k~~-----~~~v~~Fe~~c~~--~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--- 227 (274)
T COG1689 158 GDAYGVTHPNTTMTYQALYTLGSKGP-----KEEVRHFELCCGD--WGGFTEVPNSYPPYIEPTFYALRGLELLGGK--- 227 (274)
T ss_pred ccccccCCcchHHHHHHHHhhccccc-----hHHHHhHHhcccc--CCCcccCCCCCCCccchHHHHHhHHHHHccC---
Confidence 76544444666788888777666654 3466777777643 69999999984 6688999999999999875
Q ss_pred cCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCC
Q psy15672 230 AGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDK 264 (271)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~ 264 (271)
.-..+..+||. +.||++||||+.
T Consensus 228 -----------~~i~~~~rFI~-slqN~nGGFRRS 250 (274)
T COG1689 228 -----------YCISDHIRFIR-SLQNQNGGFRRS 250 (274)
T ss_pred -----------cCchHHHHHHH-HhhcCCCCeeee
Confidence 23467889999 699999999974
No 35
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.83 E-value=3.7e-19 Score=172.41 Aligned_cols=241 Identities=15% Similarity=0.112 Sum_probs=172.8
Q ss_pred cChHHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCCCC---------------CCCCCCC--CCCCchHHHHHHH
Q psy15672 10 ASRAWICYWICHSLSLLDE---PLSSADKSCVVNFLSQCQSPN---------------GGFGGGP--GQDPHIAATYAAV 69 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~---~~~~~~~~~~i~~l~~~q~~d---------------GGF~~~~--~~~~~~~~Ty~Av 69 (271)
.+.+|-|-+++.+|.--|. +-.....+++++||.++|..+ |||+... ...|++..|-.++
T Consensus 293 ~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~ 372 (621)
T TIGR01787 293 GSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVA 372 (621)
T ss_pred CCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHH
Confidence 7789999999999977662 222346889999999999877 6766432 3346777777777
Q ss_pred HHHHHhCCC-CcCCcCChHHHHHHHHhhcCCCCCeecccC-C--------------------CCChhHHHHHHHHHHHhC
Q psy15672 70 NCLIILGTP-EAYNCINRPKLKQFLQRLKAPDGGFHVHDG-G--------------------EVDIRGVYCALCVALLTQ 127 (271)
Q Consensus 70 ~~L~~lg~~-~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-~--------------------e~d~~~ty~a~~~l~ll~ 127 (271)
.++.++... +.......+++++||.++|++||||....- . .+....|..++.+|...+
T Consensus 373 la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~ 452 (621)
T TIGR01787 373 LKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG 452 (621)
T ss_pred HHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc
Confidence 666555432 111222356899999999999999984311 0 111235777777777765
Q ss_pred cC---ChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccCCCcCCcCC
Q psy15672 128 VY---SEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 128 ~~---~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
.. ....++++++||+++|++||+|.++-+. .....|.+++.+|..+|.... ..++++++||+++|++ +|||..
T Consensus 453 ~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~-DGGWge 530 (621)
T TIGR01787 453 HRADEIRNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMP-DGGWGE 530 (621)
T ss_pred CccHhHHHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCC-CCCCCc
Confidence 32 1357899999999999999998765432 233458889999999987532 3478999999999998 899975
Q ss_pred CC----------CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCC
Q psy15672 203 RT----------NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKP 265 (271)
Q Consensus 203 r~----------~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p 265 (271)
.. ...+|+..|.|++.+|...+... ....++..+||+ .+|+++|||...+
T Consensus 531 ~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~------------~~ai~rgv~~L~-~~Q~~dG~w~~~~ 590 (621)
T TIGR01787 531 DCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEAD------------SEAIERGVKYLL-ETQRPDGDWPQEY 590 (621)
T ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHcCccc------------hHHHHHHHHHHH-HhCCCCCCCCCcc
Confidence 32 13578999999999987765321 124578899998 5999999997643
No 36
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.80 E-value=1.1e-18 Score=169.13 Aligned_cols=173 Identities=17% Similarity=0.150 Sum_probs=132.9
Q ss_pred CChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672 30 LSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAATYAAVNCLIILGTPEAYNCINRPK 88 (271)
Q Consensus 30 ~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~ 88 (271)
.++...+++++||.++|++||||+.... ..+....|..++++|..++.........+++
T Consensus 385 ~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~r 464 (621)
T TIGR01787 385 VKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLER 464 (621)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHH
Confidence 4556778899999999999999985321 1233458999999998887421000124789
Q ss_pred HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC--hhhHHHHHHHHHHcccCCCCCCCCC----------C
Q psy15672 89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS--EDLFNNTREWLTACQTYEGGFSGYP----------G 156 (271)
Q Consensus 89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~--~~~~~~~~~~l~~~q~~dGGF~~~p----------~ 156 (271)
+++||.+.|++||+|.... +...+..|..++.+|..+|... .+.++++++||+++|+.||||+... .
T Consensus 465 Al~~L~~~Q~~DGsw~g~w-g~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~ 543 (621)
T TIGR01787 465 ALEYLRREQRADGSWFGRW-GVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGS 543 (621)
T ss_pred HHHHHHHhcCCCCCCcccC-CCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCC
Confidence 9999999999999997543 3344455667777788777542 2678999999999999999998542 2
Q ss_pred CCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC
Q psy15672 157 FEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT 204 (271)
Q Consensus 157 ~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~ 204 (271)
.++++..|.|||.+|...+......+++.++||.++|.+ +|||....
T Consensus 544 ~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~-dG~w~~~~ 590 (621)
T TIGR01787 544 GGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRP-DGDWPQEY 590 (621)
T ss_pred CCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCC-CCCCCCcc
Confidence 468999999999999998876555689999999999998 89997543
No 37
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.79 E-value=2.5e-19 Score=136.78 Aligned_cols=109 Identities=25% Similarity=0.335 Sum_probs=91.1
Q ss_pred HHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHH--HHHHHHcccCCCCCCCCCC-CCCchhhhhh
Q psy15672 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNT--REWLTACQTYEGGFSGYPG-FEAHGGYTFC 166 (271)
Q Consensus 90 ~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~--~~~l~~~q~~dGGF~~~p~-~es~~~~T~~ 166 (271)
|+||+++|++||||... +.++++..|++|+.+|..++... +.+++ ++||+++|++||||+..|. .+++..+|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999987 77899999999999999998643 47778 9999999999999999984 5678999999
Q ss_pred hhhHHHhhccCCc-cCHHHHHHHHHhccCCCcCCcCC
Q psy15672 167 GFAALCLLKSEHL-CDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 167 al~aL~llg~~~~-~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
++++|.+++.... ..++++++||+++|++ +|||+.
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~-dGg~~y 113 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNP-DGGWGY 113 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-T-TSSB-S
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCC-CCCCCc
Confidence 9999999998753 5688999999999998 899963
No 38
>PLN03012 Camelliol C synthase
Probab=99.77 E-value=2e-17 Score=160.96 Aligned_cols=241 Identities=13% Similarity=0.107 Sum_probs=166.2
Q ss_pred cChHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCCC---------------CCCCCC--CCCCCchHHHHHHHHH
Q psy15672 10 ASRAWICYWICHSLSLLDEPL-SSADKSCVVNFLSQCQSPN---------------GGFGGG--PGQDPHIAATYAAVNC 71 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~~-~~~~~~~~i~~l~~~q~~d---------------GGF~~~--~~~~~~~~~Ty~Av~~ 71 (271)
.+.+|-|-|++.+|.--+..- .....+|+.+||++.|..+ |||... ....++...|.-++.+
T Consensus 415 gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka 494 (759)
T PLN03012 415 GSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKC 494 (759)
T ss_pred CCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHH
Confidence 788999999999998776421 2336789999999999742 777654 2344666677777755
Q ss_pred H---HHhCCC---CcCCcCChHHHHHHHHhhcCCCCCeecccC----------------C-----CCChhHHHHHHHHHH
Q psy15672 72 L---IILGTP---EAYNCINRPKLKQFLQRLKAPDGGFHVHDG----------------G-----EVDIRGVYCALCVAL 124 (271)
Q Consensus 72 L---~~lg~~---~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~----------------~-----e~d~~~ty~a~~~l~ 124 (271)
+ ..+..+ +..+.-...++++||.++|++||||..... + .+..--|-.++.+|.
T Consensus 495 ~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~ 574 (759)
T PLN03012 495 CLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALI 574 (759)
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHH
Confidence 3 333211 001111356799999999999999964311 0 011112444556666
Q ss_pred HhCcCC--------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccC
Q psy15672 125 LTQVYS--------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQM 194 (271)
Q Consensus 125 ll~~~~--------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~ 194 (271)
+++... ...+.++++||++.|++||||.++-+-. ....|++||.+|...|+... .-++++++||+++|.
T Consensus 575 ~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~-y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~ 653 (759)
T PLN03012 575 LFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGIC-FTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQK 653 (759)
T ss_pred HHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCccccccc-CCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcC
Confidence 654321 2457889999999999999999776543 33358899999999998532 458999999999999
Q ss_pred CCcCCcCCCCC------------CCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672 195 NFEGGFQGRTN------------KLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL 262 (271)
Q Consensus 195 ~~~GGf~gr~~------------k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~ 262 (271)
+ +||+..... ..+-+..|.|++-+|-..+.... + ..-.++-.+||+ ..|.++|+|-
T Consensus 654 ~-DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~---------~-~~~i~Rg~~~Ll-~~Q~~dG~W~ 721 (759)
T PLN03012 654 D-NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAER---------D-PIPLHRAAKLII-NSQLENGDFP 721 (759)
T ss_pred C-CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCC---------C-cHHHHHHHHHHH-HcccCCCCCC
Confidence 8 899997532 23556899999999977654310 0 123477789998 4899999985
Q ss_pred C
Q psy15672 263 D 263 (271)
Q Consensus 263 ~ 263 (271)
.
T Consensus 722 q 722 (759)
T PLN03012 722 Q 722 (759)
T ss_pred C
Confidence 4
No 39
>PLN02993 lupeol synthase
Probab=99.77 E-value=1.2e-17 Score=162.73 Aligned_cols=241 Identities=15% Similarity=0.136 Sum_probs=166.9
Q ss_pred cChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCC-----C----------CCCCCC--CCCCCchHHHHHHHHH
Q psy15672 10 ASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQSP-----N----------GGFGGG--PGQDPHIAATYAAVNC 71 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~~-----d----------GGF~~~--~~~~~~~~~Ty~Av~~ 71 (271)
.+.+|-|-|++.+|.--|.. -.....+++.+||++.|.. | |||+.+ ....++...|..++.+
T Consensus 415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka 494 (763)
T PLN02993 415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC 494 (763)
T ss_pred CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence 78899999999999887742 2244688999999999873 2 888765 3345677788888775
Q ss_pred HHHhCCCCc--C-CcC---ChHHHHHHHHhhcCCCCCeecccC------------------CCCChh---HHHHHHHHHH
Q psy15672 72 LIILGTPEA--Y-NCI---NRPKLKQFLQRLKAPDGGFHVHDG------------------GEVDIR---GVYCALCVAL 124 (271)
Q Consensus 72 L~~lg~~~~--~-~~~---~~~~~~~~l~~~q~~dGgf~~~~~------------------~e~d~~---~ty~a~~~l~ 124 (271)
+.+|..... . +.+ ...++++||.++|++||||..... .-.|.. -|-.++.+|.
T Consensus 495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~ 574 (763)
T PLN02993 495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV 574 (763)
T ss_pred HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence 444432110 0 112 256799999999999999985321 011223 3444566666
Q ss_pred HhCcC--C------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc--cCHHHHHHHHHhccC
Q psy15672 125 LTQVY--S------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL--CDIKALLRWTTNRQM 194 (271)
Q Consensus 125 ll~~~--~------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~--~~~~~~~~wl~~~Q~ 194 (271)
+++.. . ...++++++||++.|++||||.++-+. .....|++||.+|..+|.... ..++++++||+++|+
T Consensus 575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv-~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~ 653 (763)
T PLN02993 575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGI-CFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR 653 (763)
T ss_pred HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCccccccc-ccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 65431 1 246789999999999999999865332 445568999999999998632 468999999999999
Q ss_pred CCcCCcCCCC------------CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672 195 NFEGGFQGRT------------NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL 262 (271)
Q Consensus 195 ~~~GGf~gr~------------~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~ 262 (271)
+ +|||.... +..+-+.-|-|++-+|...+... . + ..-.++-.+||+ ..|.++|+|-
T Consensus 654 ~-DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~----~-----~-~~~l~Rgi~~L~-~~Q~~~G~W~ 721 (763)
T PLN02993 654 D-DGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAE----R-----D-LIPLHRAAKLII-TSQLENGDFP 721 (763)
T ss_pred C-CCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCC----C-----C-cHHHHHHHHHHH-hccCCCCCCC
Confidence 8 89997632 12355688889988887664320 0 0 012467789988 5899999864
Q ss_pred C
Q psy15672 263 D 263 (271)
Q Consensus 263 ~ 263 (271)
-
T Consensus 722 q 722 (763)
T PLN02993 722 Q 722 (763)
T ss_pred C
Confidence 3
No 40
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.68 E-value=1.2e-15 Score=125.59 Aligned_cols=203 Identities=18% Similarity=0.133 Sum_probs=158.1
Q ss_pred CccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCCCCCCCC-----------------------------
Q psy15672 5 GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQC-QSPNGGFGG----------------------------- 54 (271)
Q Consensus 5 ~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~-q~~dGGF~~----------------------------- 54 (271)
|.++-+..+..+||+|.++.+||.++| .+++.++||.+. |...+|+..
T Consensus 27 f~~~Lpdti~~TyYAi~i~s~lg~evP--r~EktiefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~~~e 104 (274)
T COG1689 27 FVSQLPDTINDTYYAIKIYSLLGHEVP--RKEKTIEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFLKYNPLE 104 (274)
T ss_pred EeccCcchhhhhhhhhhhhhhcCCcCc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHhhcCchh
Confidence 345566668999999999999999877 589999999983 444333321
Q ss_pred ---------C--CCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHH
Q psy15672 55 ---------G--PGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVA 123 (271)
Q Consensus 55 ---------~--~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l 123 (271)
+ .++.+-+..||+...+|.+.+.+ -.+++-+|+.+-|+++|.+...--.-..++.||-|+-++
T Consensus 105 ~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~------~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l 178 (274)
T COG1689 105 EKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE------YLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTL 178 (274)
T ss_pred HHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC------chHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhh
Confidence 0 12234589999999999999853 267889999999999987765433445678888887777
Q ss_pred HHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCC-CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672 124 LLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFE-AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 124 ~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~e-s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
...+. .+.+..|-+.|- .+|||...|++- +-...||+|+..|.+|+... -+++.++||.+-|++ +|||+.
T Consensus 179 ~~k~~-----~~~v~~Fe~~c~-~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~--~i~~~~rFI~slqN~-nGGFRR 249 (274)
T COG1689 179 GSKGP-----KEEVRHFELCCG-DWGGFTEVPNSYPPYIEPTFYALRGLELLGGKY--CISDHIRFIRSLQNQ-NGGFRR 249 (274)
T ss_pred ccccc-----hHHHHhHHhccc-cCCCcccCCCCCCCccchHHHHHhHHHHHccCc--CchHHHHHHHHhhcC-CCCeee
Confidence 66543 556677777776 579999999976 45678999999999999873 367899999999998 899997
Q ss_pred CCC-CCCCchhhhhhhhhHHHHH
Q psy15672 203 RTN-KLVDGCYSFWQGGLFPLIY 224 (271)
Q Consensus 203 r~~-k~~D~cyt~w~~~~L~~l~ 224 (271)
... .++..-+||.++++|..|.
T Consensus 250 S~~~GISt~e~tYrAl~~L~~l~ 272 (274)
T COG1689 250 SYELGISTFENTYRALASLASLH 272 (274)
T ss_pred eEeccccchHHHHHHHHHHHHHh
Confidence 654 6788999999999998874
No 41
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.63 E-value=4.9e-14 Score=125.40 Aligned_cols=236 Identities=10% Similarity=-0.025 Sum_probs=149.0
Q ss_pred CCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCCCCCCCCCCCC--CCchHHHHHHHHHH
Q psy15672 2 SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLS-------QCQSPNGGFGGGPGQ--DPHIAATYAAVNCL 72 (271)
Q Consensus 2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~-------~~q~~dGGF~~~~~~--~~~~~~Ty~Av~~L 72 (271)
|.-...+..++++...+++.-|...+. +++..++++++||. +.|++||||+..... .++.+.|.+++.+|
T Consensus 12 P~gc~Eq~~~~~~p~~~~~~yl~~~~~-~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L 90 (292)
T cd02897 12 PYGCGEQNMVNFAPNIYVLDYLKATGQ-LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSF 90 (292)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHH
Confidence 444444555666667677776666554 33445566666665 689999999865333 67899999999999
Q ss_pred HHhCCCCcCCcCChHHHHHHHHhhcCCCCCeeccc--------C-CCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHH
Q psy15672 73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHD--------G-GEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLT 142 (271)
Q Consensus 73 ~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~--------~-~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~ 142 (271)
...+.....+....+++++||.+.|++||+|.... + .+++...|-.++.+|...|.. ..+.++++++||.
T Consensus 91 ~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~ 170 (292)
T cd02897 91 AQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLE 170 (292)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHH
Confidence 88763211222346789999999999999998421 1 123344566666666666643 2456899999999
Q ss_pred HcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCC--CcCCcCCC----------C-CCCCC
Q psy15672 143 ACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMN--FEGGFQGR----------T-NKLVD 209 (271)
Q Consensus 143 ~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~--~~GGf~gr----------~-~k~~D 209 (271)
+.+.. ..+...+..+..+|.++|.. ..++++++|...+.. ..|++... + ...+|
T Consensus 171 ~~~~~----------~~~~y~~al~a~AL~~~~~~---~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 237 (292)
T cd02897 171 AALDS----------ISDPYTLALAAYALTLAGSE---KRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAE 237 (292)
T ss_pred Hhccc----------CCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcch
Confidence 98753 23455577778888888832 355666666654321 13555421 1 12346
Q ss_pred chhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCC
Q psy15672 210 GCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDK 264 (271)
Q Consensus 210 ~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~ 264 (271)
+.-|=|++-+|...+.. ......++.+||. .+|+++|||+.-
T Consensus 238 ve~TAyaLlall~~~~~------------~~~~~~~~v~WL~-~~q~~~Ggf~sT 279 (292)
T cd02897 238 VEMTAYALLALLSAGGE------------DLAEALPIVKWLA-KQRNSLGGFSST 279 (292)
T ss_pred HHHHHHHHHHHHHcCCc------------cHhHHHHHHHHHH-HcCCCCCCcccH
Confidence 66565555554433210 1234567788988 589999999753
No 42
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.62 E-value=2e-14 Score=128.20 Aligned_cols=233 Identities=11% Similarity=-0.014 Sum_probs=150.2
Q ss_pred CCCCccCccChHHHHHHHHHHHHHcCCC--CCh-------hhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672 2 SRVGNCLDASRAWICYWICHSLSLLDEP--LSS-------ADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL 72 (271)
Q Consensus 2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~-------~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L 72 (271)
|.-.--|.-++++...+++.=|...+.- ..+ ...++.+..+++.|++||||+......++.+.|.+++.+|
T Consensus 12 P~GC~EQ~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l 91 (297)
T cd02896 12 PTGCGEQTMIKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVF 91 (297)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHH
Confidence 4343444455555566665555554331 111 2245567778899999999987766688999999999999
Q ss_pred HHhCCCCcCCcCChHHHHHHHHhhcCCCCCeeccc--------CC----CCChhHHHHHHHHHHHhCcCC-------hhh
Q psy15672 73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHD--------GG----EVDIRGVYCALCVALLTQVYS-------EDL 133 (271)
Q Consensus 73 ~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~--------~~----e~d~~~ty~a~~~l~ll~~~~-------~~~ 133 (271)
...+.....+....+++++||.+.|++||+|.... ++ ++++..|-.++.+|...+... ...
T Consensus 92 ~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~ 171 (297)
T cd02896 92 SLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQS 171 (297)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHH
Confidence 88765311122236779999999999999998541 11 245555555555555554321 346
Q ss_pred HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC----------
Q psy15672 134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR---------- 203 (271)
Q Consensus 134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr---------- 203 (271)
++++++||.+++.. ..+...+.-+.-+|.+.|.. ...++.+||.++|.. +||+...
T Consensus 172 i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~~---~~~~a~~~L~~~~~~-d~~~~~~~~~~~~~~~~ 237 (297)
T cd02896 172 IRKAISYLENQLPN----------LQRPYALAITAYALALADSP---LSHAANRKLLSLAKR-DGNGWYWWTIDSPYWPV 237 (297)
T ss_pred HHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCCh---hhHHHHHHHHHHhhh-CCCcceeccCcCccCCC
Confidence 78999999998853 12232344455567777754 468899999999987 7776532
Q ss_pred -CCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCC
Q psy15672 204 -TNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLD 263 (271)
Q Consensus 204 -~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~ 263 (271)
.....++--|=|++-++-..+. ......+.+||. .-|+..|||+.
T Consensus 238 ~~~~~~~vE~TAYALLall~~~~--------------~~~a~~iv~WL~-~qr~~~Ggf~s 283 (297)
T cd02896 238 PGPSAITVETTAYALLALLKLGD--------------IEYANPIARWLT-EQRNYGGGFGS 283 (297)
T ss_pred CCCchhhhHHHHHHHHHHHhcCC--------------chhHHHHHHHHH-hcCCCCCCeeh
Confidence 1223366666555555443321 235688999988 46888999974
No 43
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.46 E-value=7.7e-14 Score=88.50 Aligned_cols=43 Identities=42% Similarity=0.758 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhc
Q psy15672 133 LFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLK 175 (271)
Q Consensus 133 ~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg 175 (271)
+++++++||++||++||||+.+|++++|+++||||+++|+++|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 6889999999999999999999999999999999999999986
No 44
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.46 E-value=1.9e-12 Score=115.47 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=130.6
Q ss_pred CccChHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCCCCCCCCCC--------C----CCCchHHHHHHHHHHH
Q psy15672 8 LDASRAWICYWICHSLSLLDE--PLSSADKSCVVNFLSQCQSPNGGFGGGP--------G----QDPHIAATYAAVNCLI 73 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~~~--------~----~~~~~~~Ty~Av~~L~ 73 (271)
...+.+|++-|++.+|..... .+++...++.++||.+.|++||+|.... + .++++..|.+++.+|.
T Consensus 76 ~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~ 155 (297)
T cd02896 76 NRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQ 155 (297)
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHH
Confidence 347889999999999988865 3566778899999999999999998531 1 1356778888888887
Q ss_pred HhCCCCcC----CcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCC
Q psy15672 74 ILGTPEAY----NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG 149 (271)
Q Consensus 74 ~lg~~~~~----~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dG 149 (271)
-.+..... ....++++++||.+.+.+- .++..+..+..+|.+.|. ...+++.++|+++|+.||
T Consensus 156 ~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~----------~~~Y~~Al~ayALal~~~---~~~~~a~~~L~~~~~~d~ 222 (297)
T cd02896 156 EARSICPPEVQNLDQSIRKAISYLENQLPNL----------QRPYALAITAYALALADS---PLSHAANRKLLSLAKRDG 222 (297)
T ss_pred hhhccccccchhhHHHHHHHHHHHHHhcccC----------CChHHHHHHHHHHHHcCC---hhhHHHHHHHHHHhhhCC
Confidence 77642100 1124678999999987641 122222233344555553 267889999999999999
Q ss_pred CCCCC---------CCC--CCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC
Q psy15672 150 GFSGY---------PGF--EAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR 203 (271)
Q Consensus 150 GF~~~---------p~~--es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr 203 (271)
|++.. ... ..++..|.|||.++...+.. ....+.++||.+.|+. .|||..-
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~~--~~a~~iv~WL~~qr~~-~Ggf~sT 284 (297)
T cd02896 223 NGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGDI--EYANPIARWLTEQRNY-GGGFGST 284 (297)
T ss_pred CcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCCc--hhHHHHHHHHHhcCCC-CCCeehH
Confidence 98742 111 23788999999998888743 3678899999999987 7999863
No 45
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.45 E-value=5.9e-12 Score=112.01 Aligned_cols=180 Identities=18% Similarity=0.158 Sum_probs=125.5
Q ss_pred ccChHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCCCCCCCCCC---------CCCCchHHHHHHHHHHHHhCC
Q psy15672 9 DASRAWICYWICHSLSLLDE--PLSSADKSCVVNFLSQCQSPNGGFGGGP---------GQDPHIAATYAAVNCLIILGT 77 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~--~~~~~~~~~~i~~l~~~q~~dGGF~~~~---------~~~~~~~~Ty~Av~~L~~lg~ 77 (271)
+.+.+|+|-|++.+|..... .+++...+++++||.+.|++||||.... +..+++..|.+++.+|...|.
T Consensus 76 ~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~ 155 (292)
T cd02897 76 KSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGL 155 (292)
T ss_pred CCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCC
Confidence 47789999999999998874 3566788999999999999999998531 123456688899999988886
Q ss_pred CCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHH---cccCCCCCCCC
Q psy15672 78 PEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTA---CQTYEGGFSGY 154 (271)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~---~q~~dGGF~~~ 154 (271)
.. ....++++++||.+.+.+ ..++..+..+..+|.+.+.. ..+++++++.. .+..+|+|+..
T Consensus 156 ~~--~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~~~---~~~~~~~~l~~~~~~~~~~~~W~~~ 220 (292)
T cd02897 156 PS--ERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAGSE---KRPEALKKLDELAISEDGTKHWSRP 220 (292)
T ss_pred cc--ccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhccCCCCCCCcC
Confidence 32 223478999999998765 12333444555666666632 24455555444 44445566532
Q ss_pred ----------CC-CCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC
Q psy15672 155 ----------PG-FEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT 204 (271)
Q Consensus 155 ----------p~-~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~ 204 (271)
+. ..+++..|.|+|.+|...+........+.++||.+.|++ +|||..--
T Consensus 221 ~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q~~-~Ggf~sTQ 280 (292)
T cd02897 221 PPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQRNS-LGGFSSTQ 280 (292)
T ss_pred CCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcCCC-CCCcccHH
Confidence 22 235778899999999888742234567888999999987 79988643
No 46
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.36 E-value=5e-13 Score=84.72 Aligned_cols=44 Identities=30% Similarity=0.573 Sum_probs=41.5
Q ss_pred cCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHH
Q psy15672 180 CDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIY 224 (271)
Q Consensus 180 ~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~ 224 (271)
+|++++++||++||.+ +|||+++|++.+|+|||||++++|++|+
T Consensus 1 id~~~~~~~l~~~Q~~-dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNP-DGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBT-TSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCC-CCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 4689999999999997 9999999999999999999999999975
No 47
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.35 E-value=4.7e-13 Score=101.49 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-ChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhh
Q psy15672 87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTF 165 (271)
Q Consensus 87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~ 165 (271)
+++++||.+.|++||+|.... +.+...|++++.++..++.. ..+.++++++||+++|++||||+..+. .+...|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred ccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHHH
Confidence 578999999999999997652 25678888888888888642 345689999999999999999997733 3344667
Q ss_pred hhhhHHHhhccCC-ccCHHHHHHHHHhccC
Q psy15672 166 CGFAALCLLKSEH-LCDIKALLRWTTNRQM 194 (271)
Q Consensus 166 ~al~aL~llg~~~-~~~~~~~~~wl~~~Q~ 194 (271)
.++.+|.+.+... ...+++.++||+++|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 7788887776642 3357899999999875
No 48
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.34 E-value=1.4e-12 Score=98.91 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhH
Q psy15672 36 SCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRG 115 (271)
Q Consensus 36 ~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ 115 (271)
+++++||++.|++||||.... ..+...|++++.+|..++... ....++++++||.++|++||+|... .......
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~--~~~ai~ka~~~l~~~Q~~dG~w~~~--~~~~~~~ 75 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAA--VDEAIKKAIDWLLSHQNPDGGWGYS--GGEYVSM 75 (109)
T ss_dssp -----------------------------------------TS---SSBSSHHHHHHHHH---TTS--S-T--S--HHHH
T ss_pred ccccccccccccccccccccc--cccccccccccccccccCCCC--cHHHHHHHHHHHHHhcCCCCCCCCc--CCCCHHH
Confidence 678999999999999998642 367889999999999998642 2334799999999999999999866 2223445
Q ss_pred HHHHHHHHHHhCc-CChhhHHHHHHHHHHccc
Q psy15672 116 VYCALCVALLTQV-YSEDLFNNTREWLTACQT 146 (271)
Q Consensus 116 ty~a~~~l~ll~~-~~~~~~~~~~~~l~~~q~ 146 (271)
|..++.++.+.+. ...+.++++++||++.|.
T Consensus 76 t~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 76 TAAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 5556666655543 245779999999999874
No 49
>KOG0497|consensus
Probab=99.27 E-value=4.8e-11 Score=113.13 Aligned_cols=170 Identities=20% Similarity=0.215 Sum_probs=126.7
Q ss_pred CCCCChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCchHHHHHHHHHHHHhCCCCc-CC--
Q psy15672 27 DEPLSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPHIAATYAAVNCLIILGTPEA-YN-- 82 (271)
Q Consensus 27 ~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Av~~L~~lg~~~~-~~-- 82 (271)
++.++++..-.+++.|+..|.++|||....- ..+.+..|-.+|++|........ ..
T Consensus 506 g~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~ 585 (760)
T KOG0497|consen 506 GEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKK 585 (760)
T ss_pred cCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHH
Confidence 3445555556688999999999999985311 13567789999999988865311 11
Q ss_pred cC--ChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHH---HHHHHHhCcC--ChhhHHHHHHHHHHcccCCCCCCCCC
Q psy15672 83 CI--NRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA---LCVALLTQVY--SEDLFNNTREWLTACQTYEGGFSGYP 155 (271)
Q Consensus 83 ~~--~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a---~~~l~ll~~~--~~~~~~~~~~~l~~~q~~dGGF~~~p 155 (271)
.+ ..++++.||.+.|.+||+|.++.+ +++||.. +.++...|.. +-..++++++||++.|+.|||++..+
T Consensus 586 Ei~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~ 661 (760)
T KOG0497|consen 586 EIEKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESY 661 (760)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCcccc
Confidence 11 256799999999999999987643 5566654 4444555532 23578999999999999999999753
Q ss_pred ------------CCCCchhhhhhhhhHHHhhccCCcc--CHHHHHHHHHhccCCCcCCcC
Q psy15672 156 ------------GFEAHGGYTFCGFAALCLLKSEHLC--DIKALLRWTTNRQMNFEGGFQ 201 (271)
Q Consensus 156 ------------~~es~~~~T~~al~aL~llg~~~~~--~~~~~~~wl~~~Q~~~~GGf~ 201 (271)
+..+++-.|.||+.+|.+.|+.+.. -..+++..|.+.|.. +|-|.
T Consensus 662 lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~-nGdfp 720 (760)
T KOG0497|consen 662 LSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLE-NGDFP 720 (760)
T ss_pred ccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccc-cCCcc
Confidence 2347888999999999999987533 578999999999987 67665
No 50
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.22 E-value=1.4e-09 Score=95.81 Aligned_cols=148 Identities=11% Similarity=-0.070 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccC----
Q psy15672 34 DKSCVVNFLSQCQSPNGGFGGGPGQ-DPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDG---- 108 (271)
Q Consensus 34 ~~~~~i~~l~~~q~~dGGF~~~~~~-~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~---- 108 (271)
.+++.+++|.++|++||||+..++. .++.+.|.+++.+|...+.....+....+++++||.+.|++||+|.....
T Consensus 50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~ 129 (282)
T cd02891 50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR 129 (282)
T ss_pred HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence 4667899999999999999987766 88999999999999877642111112278899999999999999986422
Q ss_pred -----CCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHH
Q psy15672 109 -----GEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIK 183 (271)
Q Consensus 109 -----~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~ 183 (271)
...+...|..++.+|...|......+.++++||.+.... ..+.........+|.++|.. ....
T Consensus 130 ~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~~--~~~~ 197 (282)
T cd02891 130 EMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGDS--TRAD 197 (282)
T ss_pred hhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCcc--HHHH
Confidence 223445566677677766654456788999999987742 12233344555666777753 2355
Q ss_pred HHHHHHHhcc
Q psy15672 184 ALLRWTTNRQ 193 (271)
Q Consensus 184 ~~~~wl~~~Q 193 (271)
++++-+.+.-
T Consensus 198 ~~l~~l~~~~ 207 (282)
T cd02891 198 EALKKLLEAA 207 (282)
T ss_pred HHHHHHHHHh
Confidence 6666666553
No 51
>KOG0497|consensus
Probab=99.02 E-value=1.7e-08 Score=96.14 Aligned_cols=236 Identities=16% Similarity=0.184 Sum_probs=160.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCCC---------------CCCCCCCC----CCCchHHHHHHH
Q psy15672 11 SRAWICYWICHSLSLLDEPLSS--ADKSCVVNFLSQCQSPN---------------GGFGGGPG----QDPHIAATYAAV 69 (271)
Q Consensus 11 ~~~~~~y~~l~~L~lL~~~~~~--~~~~~~i~~l~~~q~~d---------------GGF~~~~~----~~~~~~~Ty~Av 69 (271)
+.+|.+=|+|.++..-+.+ ++ ...++..+||.+.|-.+ |||..+.. ..+| .|.-|+
T Consensus 415 sQ~Wdt~falqalla~~~~-~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsD--ctaEal 491 (760)
T KOG0497|consen 415 SQLWDTAFALQALLAAGLV-DEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSD--CTAEAL 491 (760)
T ss_pred hhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeecc--ccHHHH
Confidence 7899999999999888775 21 24567889999988654 55554332 1233 566666
Q ss_pred HHHHHhCCCC---cCCcCChHH---HHHHHHhhcCCCCCeeccc----------------CCCC-----ChhHHHHHHHH
Q psy15672 70 NCLIILGTPE---AYNCINRPK---LKQFLQRLKAPDGGFHVHD----------------GGEV-----DIRGVYCALCV 122 (271)
Q Consensus 70 ~~L~~lg~~~---~~~~~~~~~---~~~~l~~~q~~dGgf~~~~----------------~~e~-----d~~~ty~a~~~ 122 (271)
.+..+++... ..+.+++++ +++.|..+|..+|||.... .+.. -+.-|-.++.+
T Consensus 492 ~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~a 571 (760)
T KOG0497|consen 492 KCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQA 571 (760)
T ss_pred HHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHH
Confidence 6666666532 125678887 5666899999999997431 1111 23344566677
Q ss_pred HHHhCcC-C-------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC--ccCHHHHHHHHHhc
Q psy15672 123 ALLTQVY-S-------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH--LCDIKALLRWTTNR 192 (271)
Q Consensus 123 l~ll~~~-~-------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~--~~~~~~~~~wl~~~ 192 (271)
|...... . ...+.++++||.+.|.+||.+-+.-+- =-...|+.|+.+|...|+.. ...+++.++||++.
T Consensus 572 L~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgv-CFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~ 650 (760)
T KOG0497|consen 572 LVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGV-CFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSK 650 (760)
T ss_pred HHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhH-HHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhh
Confidence 7766432 1 134678999999999999998544321 12334778999999999853 34689999999999
Q ss_pred cCCCcCCcCCCCC----C--------CCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCC
Q psy15672 193 QMNFEGGFQGRTN----K--------LVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGG 260 (271)
Q Consensus 193 Q~~~~GGf~gr~~----k--------~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GG 260 (271)
|.+ +||+...+. | .+.+--|.|++..|-+.+..-+. ..-..+..++|. ..|-.+|-
T Consensus 651 Q~~-~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd----------~~P~hr~ak~li-nsQ~~nGd 718 (760)
T KOG0497|consen 651 QNP-DGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERD----------PLPLHRAAKVLI-NSQLENGD 718 (760)
T ss_pred hcc-cCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccc----------cchHHHHHHHHH-hcccccCC
Confidence 998 899985432 1 34677899999999887654111 234567778877 48988886
Q ss_pred cC
Q psy15672 261 LL 262 (271)
Q Consensus 261 f~ 262 (271)
|-
T Consensus 719 fp 720 (760)
T KOG0497|consen 719 FP 720 (760)
T ss_pred cc
Confidence 63
No 52
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.93 E-value=6.7e-09 Score=90.25 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=114.0
Q ss_pred HHHHhcCCCCCCCCCC-CCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccC-------CCC
Q psy15672 40 NFLSQCQSPNGGFGGG-PGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDG-------GEV 111 (271)
Q Consensus 40 ~~l~~~q~~dGGF~~~-~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-------~e~ 111 (271)
.=+++.+++||||+.. ...+++.+.|.+++..|......-..+.-..+++++||.+.|++||+|..... +..
T Consensus 4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~ 83 (246)
T PF07678_consen 4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGV 83 (246)
T ss_dssp HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGG
T ss_pred HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCC
Confidence 3467889999999988 66789999999999999888753111112257899999999999999975311 111
Q ss_pred ChhHHHHHHHHHHHhCcC---------ChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhH--HHhhccCCcc
Q psy15672 112 DIRGVYCALCVALLTQVY---------SEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAA--LCLLKSEHLC 180 (271)
Q Consensus 112 d~~~ty~a~~~l~ll~~~---------~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~a--L~llg~~~~~ 180 (271)
+-..+..|....+++... ....++++++||.+... +. .+. |+- ||.+ |.+++ +..
T Consensus 84 ~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~---------~~-~~~-Y~l-Al~aYAL~la~--~~~ 149 (246)
T PF07678_consen 84 EDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD---------NI-QDP-YTL-ALVAYALALAG--DSP 149 (246)
T ss_dssp THHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG---------CT-SSH-HHH-HHHHHHHHHTT--TCH
T ss_pred CCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc---------cc-CCH-HHH-HHHHHHHHhhc--ccc
Confidence 233444444444444221 13568899999987621 10 111 221 3333 44455 334
Q ss_pred CHHHHHHHHHhccCCCcCCcCCCCCCC--------------CCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHH
Q psy15672 181 DIKALLRWTTNRQMNFEGGFQGRTNKL--------------VDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRAL 246 (271)
Q Consensus 181 ~~~~~~~wl~~~Q~~~~GGf~gr~~k~--------------~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l 246 (271)
...++.+-|.+.... +||....+... .|+.-|=+++ |.++... .+.....+
T Consensus 150 ~~~~~~~~L~~~a~~-~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaL--La~l~~~------------~~~~~~~i 214 (246)
T PF07678_consen 150 QASKLLNKLNSMATT-EGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYAL--LALLKRG------------DLEEASPI 214 (246)
T ss_dssp HHHHHHHHHHCHCEE-TTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHH--HHHHHHT------------CHHHHHHH
T ss_pred hHHHHHHHHHHhhhh-ccccCcccCCcccccccccccccchHHHHHHHHHH--HHHHhcc------------cHHHHHHH
Confidence 567788888877655 55554322221 1223332222 3333321 12456889
Q ss_pred HHHHHhhhCCCCCCcCC
Q psy15672 247 QEYILICCQHFNGGLLD 263 (271)
Q Consensus 247 ~~~il~~~Q~~~GGf~~ 263 (271)
.+||. .-|+..|||+.
T Consensus 215 v~WL~-~qr~~~Ggf~S 230 (246)
T PF07678_consen 215 VRWLI-SQRNSGGGFGS 230 (246)
T ss_dssp HHHHH-HCTTTTSSTSS
T ss_pred HHHHH-HhcCCCCccCc
Confidence 99988 46688999975
No 53
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.80 E-value=9.7e-08 Score=82.95 Aligned_cols=180 Identities=21% Similarity=0.229 Sum_probs=119.6
Q ss_pred CccCccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCC---------CCCchHHHHHHHHHHH
Q psy15672 5 GNCLDASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPG---------QDPHIAATYAAVNCLI 73 (271)
Q Consensus 5 ~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------~~~~~~~Ty~Av~~L~ 73 (271)
|....++..|+|-|++..|.....- +++...+++++||.+.|++||.|..... ...++..|.+.+.+|.
T Consensus 19 f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~ 98 (246)
T PF07678_consen 19 FSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALL 98 (246)
T ss_dssp STTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHH
Confidence 4345689999999999999998874 4677789999999999999999975321 1235667777777776
Q ss_pred HhCCCC----cCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHH-HHH--HHHHhCcCChhhHHHHHHHHHHccc
Q psy15672 74 ILGTPE----AYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYC-ALC--VALLTQVYSEDLFNNTREWLTACQT 146 (271)
Q Consensus 74 ~lg~~~----~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~-a~~--~l~ll~~~~~~~~~~~~~~l~~~q~ 146 (271)
-.+... .......+++++||.+.... ....|. |+. +|.+.+ ..+..+++.+-|.+...
T Consensus 99 e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~-------------~~~~Y~lAl~aYAL~la~--~~~~~~~~~~~L~~~a~ 163 (246)
T PF07678_consen 99 EAGSLCDSEKPEYENAINKALNYLERHLDN-------------IQDPYTLALVAYALALAG--DSPQASKLLNKLNSMAT 163 (246)
T ss_dssp HCHCCHTTTHHCHHHHHHHHHHHHHHHHGC-------------TSSHHHHHHHHHHHHHTT--TCHHHHHHHHHHHCHCE
T ss_pred hhhhhccccchhhHHHHHHHHHHHHHhccc-------------cCCHHHHHHHHHHHHhhc--ccchHHHHHHHHHHhhh
Confidence 665210 00123478899999876211 112232 222 334444 34667888888888887
Q ss_pred CCCCCCCCCCCC--------------CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672 147 YEGGFSGYPGFE--------------AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 147 ~dGGF~~~p~~e--------------s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
.+||....+... .++..|.+||.++... .+.......++||.+.|+. .|||..
T Consensus 164 ~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~-~Ggf~S 230 (246)
T PF07678_consen 164 TEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNS-GGGFGS 230 (246)
T ss_dssp ETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTT-TSSTSS
T ss_pred hccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCC-CCccCc
Confidence 777754322211 2467788888766666 3344678999999998887 799987
No 54
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.79 E-value=5e-08 Score=85.98 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=85.7
Q ss_pred hHHHHHHHHhhcCCCCCeecccCC-CCChhHHHHHHHHHHHhC---cCChhhHHHHHHHHHHcccCCCCCCCCCC-----
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDGG-EVDIRGVYCALCVALLTQ---VYSEDLFNNTREWLTACQTYEGGFSGYPG----- 156 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~~-e~d~~~ty~a~~~l~ll~---~~~~~~~~~~~~~l~~~q~~dGGF~~~p~----- 156 (271)
+++++++|.+.|++||||+..++. +++...|..++.+|...+ ..+...++++++||.+.|..||+|.....
T Consensus 51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~ 130 (282)
T cd02891 51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE 130 (282)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence 567899999999999999988766 788888888888887653 23456689999999999999999986432
Q ss_pred ----CCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccC
Q psy15672 157 ----FEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194 (271)
Q Consensus 157 ----~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~ 194 (271)
.......|.+++.+|...|......+.+.++||.++..
T Consensus 131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLD 172 (282)
T ss_pred hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhcc
Confidence 22344568999999998887543457889999998753
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.12 E-value=6e-06 Score=77.76 Aligned_cols=163 Identities=20% Similarity=0.197 Sum_probs=104.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCC-------------------CchHHHHHHHHHHHHhCCC-CcCCcCChHHHHHHH
Q psy15672 34 DKSCVVNFLSQCQSPNGGFGGGPGQD-------------------PHIAATYAAVNCLIILGTP-EAYNCINRPKLKQFL 93 (271)
Q Consensus 34 ~~~~~i~~l~~~q~~dGGF~~~~~~~-------------------~~~~~Ty~Av~~L~~lg~~-~~~~~~~~~~~~~~l 93 (271)
+-++.++||...|+..|||...+-.. +-+..|-..+..|..+... ++....+.+++++||
T Consensus 282 ~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~L 361 (517)
T COG1657 282 NFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWL 361 (517)
T ss_pred hHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhh
Confidence 45669999999999999998653211 1111222222223333221 101135688999999
Q ss_pred HhhcCCCCCeecccCCCCChhHHHHH---HHHHHHhCcCC--hhhHHHHHHHHHHcccCCCCCCCCCC---------CC-
Q psy15672 94 QRLKAPDGGFHVHDGGEVDIRGVYCA---LCVALLTQVYS--EDLFNNTREWLTACQTYEGGFSGYPG---------FE- 158 (271)
Q Consensus 94 ~~~q~~dGgf~~~~~~e~d~~~ty~a---~~~l~ll~~~~--~~~~~~~~~~l~~~q~~dGGF~~~p~---------~e- 158 (271)
.+.|.++|+|....+ .+++|.. +..+++.|... ...+.+++.|+.++|++||||+..-. .+
T Consensus 362 L~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~ 437 (517)
T COG1657 362 LSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTES 437 (517)
T ss_pred hhhccccCceeeEEE----EEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccccccc
Confidence 999999999976532 2344444 44444555332 24688999999999999999985311 12
Q ss_pred CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcC
Q psy15672 159 AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQ 201 (271)
Q Consensus 159 s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~ 201 (271)
+-.-.|-||+..+....+....-.+..++.+.+.|.+ +|-.+
T Consensus 438 sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~-~g~~~ 479 (517)
T COG1657 438 SLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEP-DGSWR 479 (517)
T ss_pred hhhcchhHHHHHHHHhcccchhhhcccccccccCcCC-CCccc
Confidence 2334677888888877766433367788999999886 44433
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=97.81 E-value=6.8e-05 Score=70.75 Aligned_cols=158 Identities=22% Similarity=0.284 Sum_probs=103.6
Q ss_pred CCCCCCCCC--CCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCC---------------
Q psy15672 48 PNGGFGGGP--GQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGE--------------- 110 (271)
Q Consensus 48 ~dGGF~~~~--~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e--------------- 110 (271)
.-|||+... ...+|...|-.++..+..... ..+-+++++|+...|+..|+|...+...
T Consensus 248 ~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~-----~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~ 322 (517)
T COG1657 248 SPGGWGFSNINTGYPDADDTAGVVRALIGVQS-----LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKA 322 (517)
T ss_pred CCCccceeecccCCCCchhhhHHHHHHHhhcc-----hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccc
Confidence 346665433 356778888888887777653 4567779999999999999998542110
Q ss_pred -CCh---hHHHHHHHHHHHhCcC-C---hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhh---hhhhhhHHHhhccCC-
Q psy15672 111 -VDI---RGVYCALCVALLTQVY-S---EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGY---TFCGFAALCLLKSEH- 178 (271)
Q Consensus 111 -~d~---~~ty~a~~~l~ll~~~-~---~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~---T~~al~aL~llg~~~- 178 (271)
.+. .-|-..+.++..++.. + ...++++++||++.|.++|-+-++- +.|+ |.-++.+|.+.|..+
T Consensus 323 ~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w----~v~~iY~~s~a~~~l~~~g~~~~ 398 (517)
T COG1657 323 MVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRW----GVCYIYGTSGALSALALVGETDE 398 (517)
T ss_pred cccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEE----EEEEEEehhhhhhhhhccCcccc
Confidence 000 0011122222222211 1 3568999999999999999765432 3333 444666666666654
Q ss_pred -ccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhh
Q psy15672 179 -LCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215 (271)
Q Consensus 179 -~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w 215 (271)
..-+++++.|+..+|.+ +||+..--...+|..|++-
T Consensus 399 ~~~~v~~~~~~l~~~~~~-~~Gw~e~~~~~~~~~~~~t 435 (517)
T COG1657 399 NEVLVRKLISWLVSKQMP-DGGWGEAKEAISDPVYTGT 435 (517)
T ss_pred chHHHHHHHHHhhhcccc-CCCcccccccccccccccc
Confidence 23478999999999998 8999988777777777664
No 57
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.02 E-value=0.0094 Score=52.66 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhcCCCCCCCCCCC----CCCC-----chHHHHHHHHHHHHhCCC-CcCCc----------CChHHHHH
Q psy15672 32 SADKSCVVNFLSQCQSPNGGFGGGP----GQDP-----HIAATYAAVNCLIILGTP-EAYNC----------INRPKLKQ 91 (271)
Q Consensus 32 ~~~~~~~i~~l~~~q~~dGGF~~~~----~~~~-----~~~~Ty~Av~~L~~lg~~-~~~~~----------~~~~~~~~ 91 (271)
....+++++||++.|+++|||.... +... |-.+ ..++..|..+... +.+.. ...+++++
T Consensus 66 ~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am-~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid 144 (290)
T TIGR02474 66 RDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAM-VNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIE 144 (290)
T ss_pred HHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHH-HHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHH
Confidence 3456789999999999999998642 1112 2111 1333444333211 00011 12578999
Q ss_pred HHHhhcCCCCCeec
Q psy15672 92 FLQRLKAPDGGFHV 105 (271)
Q Consensus 92 ~l~~~q~~dGgf~~ 105 (271)
||++.|.++||+..
T Consensus 145 ~ILktQ~~~gg~~t 158 (290)
T TIGR02474 145 CILKTQVVQNGKLT 158 (290)
T ss_pred HHHHhhcccCCcCC
Confidence 99999998886653
No 58
>PLN02279 ent-kaur-16-ene synthase
Probab=96.50 E-value=0.013 Score=58.80 Aligned_cols=168 Identities=17% Similarity=0.113 Sum_probs=94.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCC----CCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc---------CCCCC
Q psy15672 36 SCVVNFLSQCQSPNGGFGGGPGQ----DPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK---------APDGG 102 (271)
Q Consensus 36 ~~~i~~l~~~q~~dGGF~~~~~~----~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q---------~~dGg 102 (271)
..+++||+..|.+||+|+..+.. ..-+.+|.++|.+|.--+.. ...+++.+.||.+.- .|- |
T Consensus 76 p~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~----~~~~~~gl~fi~~n~~~~~d~~~~~pv-G 150 (784)
T PLN02279 76 PECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG----EEQINKGLQFIELNSASVTDEKQHKPI-G 150 (784)
T ss_pred hHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC----cccchhhHHHHHHHHHhhcccccCCCc-e
Confidence 57999999999999999964221 23568999999999877653 223466667777421 122 2
Q ss_pred eecc-c---------CCCCCh-hHHHHHHHHH---HHhC--------cCCh--hhHHH---H--HHHHHHcccCCCCCCC
Q psy15672 103 FHVH-D---------GGEVDI-RGVYCALCVA---LLTQ--------VYSE--DLFNN---T--REWLTACQTYEGGFSG 153 (271)
Q Consensus 103 f~~~-~---------~~e~d~-~~ty~a~~~l---~ll~--------~~~~--~~~~~---~--~~~l~~~q~~dGGF~~ 153 (271)
|... | +-+-+. ....-.+... .+.. .+.. -..+. . .+-|++.|..||.|..
T Consensus 151 fei~fP~ll~~a~~~gl~~~~~~~~l~~~~~~r~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~ 230 (784)
T PLN02279 151 FDIIFPGMIEYAKDLDLNLPLGSEVVDAMLHKRDLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFN 230 (784)
T ss_pred EEEehHHHHHHHHHcCCCCCCChHHHHHHHHhhhHHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCccc
Confidence 4321 1 000000 0000011000 0000 0000 00011 1 1225678889999987
Q ss_pred CCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC-CCCchhhhhhhhhHHHHHHH
Q psy15672 154 YPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK-LVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 154 ~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~ 226 (271)
.|.. |.+++. . . . .+++.+||..-+..+.| +-|+. +.|.+..-|++.+|.-||-.
T Consensus 231 SPsa------TAa~l~-----~-~--~-~~~~~~yL~~~~~~~~g---~vP~~yp~~~fe~l~lvd~L~rlGi~ 286 (784)
T PLN02279 231 SPST------TAAAFS-----H-L--Q-NAGCLRYLRSLLQKFGN---AVPTVYPLDQYARLSMVDTLERLGID 286 (784)
T ss_pred CcHH------HHHHHH-----c-c--C-ChHHHHHHHHHHHhcCC---CCCCCCcccHHHHhHHHHHHHHhCCc
Confidence 7753 444432 1 1 1 26899999887666444 45665 56788888999999888764
No 59
>KOG1366|consensus
Probab=96.38 E-value=0.057 Score=57.50 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=109.7
Q ss_pred CCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCCCCCCCCCCC--CCCchHHHHHHHHHH
Q psy15672 2 SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLS-------QCQSPNGGFGGGPG--QDPHIAATYAAVNCL 72 (271)
Q Consensus 2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~-------~~q~~dGGF~~~~~--~~~~~~~Ty~Av~~L 72 (271)
|...-.|.--..+..++++.=|...++ +.++.+++++++|. .-+++||+|...-. .....+-|.+.+.++
T Consensus 934 P~GcGEQnMi~faPni~v~~YL~~t~q-~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f 1012 (1436)
T KOG1366|consen 934 PYGCGEQNMINFAPNIYVLKYLPKTNQ-LTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVF 1012 (1436)
T ss_pred CCCcccceeecccchhhHHHHHhhhhc-cChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHh
Confidence 333333333344455666666666665 34556677777764 45689999986433 445667777777766
Q ss_pred HHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecc--------cCCCCCh--------------h----------------
Q psy15672 73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVH--------DGGEVDI--------------R---------------- 114 (271)
Q Consensus 73 ~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~--------~~~e~d~--------------~---------------- 114 (271)
......-..+..-..++++||...|.++|+|... .++..+. .
T Consensus 1013 ~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 1092 (1436)
T KOG1366|consen 1013 SQAKEYIFIDPNVITQALNWLSQQQKENGSFKEVGEVLHNEMQGGLQDIVALTAIVLSVILDVDNASIQKAVAYLEESLD 1092 (1436)
T ss_pred hhccCceEecHHHHHHHHHHHHHhhccCceEeccccccchhhhcCCCCcceeeeEeeeeeccchhhHHHHHHHHHhhccC
Confidence 6654321112233678999999999999999743 1122111 0
Q ss_pred ----HHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCC--------------CCCC-CCCchhhhhhhhhHHHhhc
Q psy15672 115 ----GVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFS--------------GYPG-FEAHGGYTFCGFAALCLLK 175 (271)
Q Consensus 115 ----~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~--------------~~p~-~es~~~~T~~al~aL~llg 175 (271)
.+|.+..+...+.........+.+.=+++.-...|+.. ..+. ...+...|.+|+-++.++.
T Consensus 1093 ~~~~~~~~~a~~ayAl~l~~sp~a~~~~~~l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~~~~~~ 1172 (1436)
T KOG1366|consen 1093 SGSMDVYTVAITAYALQLAKSPQAAKALAKLKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLAYLLLA 1172 (1436)
T ss_pred ccccccchHHHHHHHHHhccCchHHHHHHhhhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHHHHHhc
Confidence 11111111111111111111222222333222233211 1111 1246778899999888887
Q ss_pred cCCccCHHHHHHHHHhccCCCcCCcCCCC
Q psy15672 176 SEHLCDIKALLRWTTNRQMNFEGGFQGRT 204 (271)
Q Consensus 176 ~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~ 204 (271)
..+ -....++||.+.+.. .|||+.-.
T Consensus 1173 ~~~--~~~pivrWl~~qr~~-~GGf~STQ 1198 (1436)
T KOG1366|consen 1173 QVD--YALPIVRWLVEQRNA-LGGFSSTQ 1198 (1436)
T ss_pred ccC--cCchhHhhhhhhhcc-cCceeehH
Confidence 764 456789999997776 89998754
No 60
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.10 E-value=0.031 Score=49.44 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=61.5
Q ss_pred hHHHHHHHHhhcCCCCCeecc-cC-CCCChhHHH------HHHHHHHHh-C-cC-----C-------hhhHHHHHHHHHH
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVH-DG-GEVDIRGVY------CALCVALLT-Q-VY-----S-------EDLFNNTREWLTA 143 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~-~~-~e~d~~~ty------~a~~~l~ll-~-~~-----~-------~~~~~~~~~~l~~ 143 (271)
.+++++||.+.|.++|||... |. +.-.-..|| -++..|..+ . .. + ...++++++||++
T Consensus 69 ~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILk 148 (290)
T TIGR02474 69 ARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILK 148 (290)
T ss_pred HHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999853 21 121122222 222233222 1 10 0 2357899999999
Q ss_pred cccCCCCC----CCC-------CCC----CC---chhhhhhhhhHHHhhccCCc---cCHHHHHHHHHhccCC
Q psy15672 144 CQTYEGGF----SGY-------PGF----EA---HGGYTFCGFAALCLLKSEHL---CDIKALLRWTTNRQMN 195 (271)
Q Consensus 144 ~q~~dGGF----~~~-------p~~----es---~~~~T~~al~aL~llg~~~~---~~~~~~~~wl~~~Q~~ 195 (271)
.|-.+||. +.. |-. |. -+..|.-.|.-|.-+..+.. ..++.++.|+.+..-+
T Consensus 149 tQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~ 221 (290)
T TIGR02474 149 TQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIR 221 (290)
T ss_pred hhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence 99888754 321 111 11 12234444444444433321 1467899999987643
No 61
>PLN02592 ent-copalyl diphosphate synthase
Probab=95.96 E-value=0.069 Score=53.67 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCCCCCCCCCCC--CCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc---C-CC-----CCee
Q psy15672 36 SCVVNFLSQCQSPNGGFGGGPG--QDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK---A-PD-----GGFH 104 (271)
Q Consensus 36 ~~~i~~l~~~q~~dGGF~~~~~--~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q---~-~d-----Ggf~ 104 (271)
..+++||+..|.+||||+.... ...-+.+|.+||.+|..-+.. .-.+++.+.||.+.- . ++ =||.
T Consensus 118 P~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~rGl~fi~~nl~~~~~~~~~~~pvGFe 193 (800)
T PLN02592 118 PSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH----PEKCEKGMSFFRENICKLEDENAEHMPIGFE 193 (800)
T ss_pred HHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHhhcCCCCCCCceEE
Confidence 4799999999999999997422 123468899999888775432 223578888888643 1 11 0233
Q ss_pred cc-c--------------CCCCChhHHHHHHHHHHHhCcC--------Ch--hhHHHH--HH--HHHHcccCCCCCCCCC
Q psy15672 105 VH-D--------------GGEVDIRGVYCALCVALLTQVY--------SE--DLFNNT--RE--WLTACQTYEGGFSGYP 155 (271)
Q Consensus 105 ~~-~--------------~~e~d~~~ty~a~~~l~ll~~~--------~~--~~~~~~--~~--~l~~~q~~dGGF~~~p 155 (271)
.. | ....++...+. .-.+.+-.+. .. -..+.. ++ -++..|..||+|...|
T Consensus 194 IifP~LLe~a~~lgL~~p~~~~~l~~i~~-~r~~kL~r~~~~~~~~~p~~llhslEgl~~~dw~~v~~~q~~~GS~~~SP 272 (800)
T PLN02592 194 VAFPSLLEIAKNLDIEVPYDSPVLKEIYA-QRNLKLTRIPKDIMHKVPTTLLHSLEGMPGLDWEKLLKLQCQDGSFLFSP 272 (800)
T ss_pred eeHHHHHHHHHHcCCCCCCCcHHHHHHHH-hhHHHHhhCchhhhccCcchHHHHHhccccCCHHHHhcccCCCCCccCCc
Confidence 11 1 11111111100 0000010000 00 000111 12 3566788899998777
Q ss_pred CCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC-CCCchhhhhhhhhHHHHHHH
Q psy15672 156 GFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK-LVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 156 ~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~ 226 (271)
.. |.+++. .. -.+++.+||.+-...+.|| -|+. +.|...--|++-+|.-||-.
T Consensus 273 Sa------TAaaL~-----~~----~d~~cl~YL~~~~~k~~Gg---VP~vyP~d~fE~LwlVDtLqRLGIs 326 (800)
T PLN02592 273 SS------TAFALM-----QT----KDENCLEYLNKAVQRFNGG---VPNVYPVDLFEHIWAVDRLQRLGIS 326 (800)
T ss_pred hH------HHHHHh-----cc----CchHHHHHHHHHHHHcCCC---CCCCCCCcHHHHHHHHHHHHHcCCc
Confidence 53 444432 11 1368899998766554444 5665 45677777999988877654
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=93.66 E-value=0.058 Score=48.52 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=63.1
Q ss_pred HHHHHHHcCCCCCh---------hhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHH
Q psy15672 19 ICHSLSLLDEPLSS---------ADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKL 89 (271)
Q Consensus 19 ~l~~L~lL~~~~~~---------~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~ 89 (271)
++.+|..+...... ...+++++.|.+.|.+||-|| |+++|--|+++|...+....-..-+..++
T Consensus 192 A~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~~w~C~k~ 264 (326)
T PF01122_consen 192 AVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSESEWNCQKA 264 (326)
T ss_dssp HHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHHHHHHHHH
T ss_pred HHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcchhhHHHHH
Confidence 45566666553221 124567788899999999998 46799999999998886421112357889
Q ss_pred HHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCC
Q psy15672 90 KQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFS 152 (271)
Q Consensus 90 ~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~ 152 (271)
.++|.+.. ++|.|... ..+..+|-.|.-.+.-++.. .+|+.++|-+.
T Consensus 265 ~~~ll~~i-~~G~F~nP----------~a~aQiLPaL~gKTYLDv~~-----~~C~~~~~~~~ 311 (326)
T PF01122_consen 265 LDALLKEI-SQGAFQNP----------MAIAQILPALNGKTYLDVNS-----VDCSSPDGNLN 311 (326)
T ss_dssp HHHHHHHH-TTTTT-SH----------HHHHHHHHHHTT--GGGGGS-------SSS--EE--
T ss_pred HHHHHHHh-hcCCCCCH----------HHHHHHHHHHcCCCccccCC-----CCCCCCCCccc
Confidence 99988854 58999742 13344554443223223322 46888877765
No 63
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=2.5 Score=41.66 Aligned_cols=94 Identities=21% Similarity=0.162 Sum_probs=52.7
Q ss_pred hhhhHHHhhccCC-----ccCHHHHHHHHHhccCCC------cCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCC
Q psy15672 166 CGFAALCLLKSEH-----LCDIKALLRWTTNRQMNF------EGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTC 234 (271)
Q Consensus 166 ~al~aL~llg~~~-----~~~~~~~~~wl~~~Q~~~------~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~ 234 (271)
+.+++|+.+++.- ..-.+++.+||.+..... -+|=..-.+...| |.|.+.+.|.+-+...
T Consensus 415 lmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leD--YA~~i~gll~lye~t~------- 485 (667)
T COG1331 415 LMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLED--YAFLILGLLALYEATG------- 485 (667)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchh--HHHHHHHHHHHHHhhC-------
Confidence 4677777666531 123578999999876531 0121122233444 6666666666544431
Q ss_pred CCCccccCHHHHHHHHHhhhCCCCCCcCCCCCCCC
Q psy15672 235 LDGHWLFHHRALQEYILICCQHFNGGLLDKPENMV 269 (271)
Q Consensus 235 ~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~ 269 (271)
+..|+--..+|.+-++..++++.|||-+.|+...
T Consensus 486 -d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~ 519 (667)
T COG1331 486 -DLAYLEKAIELADEAIADFWDDEGGFYDTPSDSE 519 (667)
T ss_pred -cHHHHHHHHHHHHHHHHHhcCCCCCcccCCCccc
Confidence 1123344456666555578888899887665543
No 64
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=91.53 E-value=1.3 Score=40.05 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHHHHhCCCCcCC-----cC--ChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCCh-
Q psy15672 60 PHIAATYAAVNCLIILGTPEAYN-----CI--NRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSE- 131 (271)
Q Consensus 60 ~~~~~Ty~Av~~L~~lg~~~~~~-----~~--~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~- 131 (271)
-++.++..|+.+|.-+....... .+ ..+++++.|.+.|.+||.|++ +.+|=-|+.+|...+....
T Consensus 184 ~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~ 256 (326)
T PF01122_consen 184 FSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSE 256 (326)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSH
T ss_pred CCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcc
Confidence 34666777888887665421110 01 245678888999999999973 4567677777777665322
Q ss_pred --hhHHHHHHHHHHcccCCCCCC
Q psy15672 132 --DLFNNTREWLTACQTYEGGFS 152 (271)
Q Consensus 132 --~~~~~~~~~l~~~q~~dGGF~ 152 (271)
.+..++.++|++.. .+|.|.
T Consensus 257 ~~w~C~k~~~~ll~~i-~~G~F~ 278 (326)
T PF01122_consen 257 SEWNCQKALDALLKEI-SQGAFQ 278 (326)
T ss_dssp HHHHHHHHHHHHHHHH-TTTTT-
T ss_pred hhhHHHHHHHHHHHHh-hcCCCC
Confidence 45788999999854 589996
No 65
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=89.39 E-value=11 Score=37.43 Aligned_cols=133 Identities=16% Similarity=0.136 Sum_probs=89.8
Q ss_pred ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672 9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPK 88 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~ 88 (271)
..+.+.-+||++.+|..|+.+++ +.+.+.+++.+.-.+. .+++...|+|+.+...|+... . -..+
T Consensus 45 ~~~dLes~yyav~glk~Lg~~~~--~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~C~~--~--~~~~ 109 (636)
T PF05817_consen 45 PSSDLESAYYAVLGLKLLGIKVP--DSKAACKFLKKALDES---------SNDLESLFYAASASKALKCKV--S--VSNE 109 (636)
T ss_pred CcccHHHHHHHHhhHHHhCCCCC--ChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcCCcc--c--CcHH
Confidence 46677889999999999998765 3778888888865431 146888999999999998641 1 2445
Q ss_pred HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC-hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhh
Q psy15672 89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS-EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCG 167 (271)
Q Consensus 89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~-~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~a 167 (271)
+.+-+...-.+| +++...|.++.++..+|..- ..+.++.+.-|...+..|. ....+-.|
T Consensus 110 ~~~~l~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~a 169 (636)
T PF05817_consen 110 VKSLLKAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD----------SLLSLGYA 169 (636)
T ss_pred HHHHHHHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc----------cHHHHHHH
Confidence 555555554443 34567999999999998542 3466777777777665432 22233446
Q ss_pred hhHHHhhcc
Q psy15672 168 FAALCLLKS 176 (271)
Q Consensus 168 l~aL~llg~ 176 (271)
+.+++.|+.
T Consensus 170 l~~aa~L~~ 178 (636)
T PF05817_consen 170 LHAAAQLSK 178 (636)
T ss_pred HHHHHhhcc
Confidence 666666654
No 66
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.80 E-value=19 Score=33.12 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=94.4
Q ss_pred CccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCC----CchHHHHHHHHHHHHhCCCCc-CC
Q psy15672 8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQD----PHIAATYAAVNCLIILGTPEA-YN 82 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~----~~~~~Ty~Av~~L~~lg~~~~-~~ 82 (271)
.+.|-+++.-.+-..|..+|.++++...+..++-+.+....||=|+-++... +--..-++.+..+.+.++.+. ..
T Consensus 150 ~~nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYns~aih~y~l~~~~~~~~~~~~~~ 229 (361)
T PF10022_consen 150 PDNNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQFDYYNSWAIHPYLLLYARLMGDEDPERA 229 (361)
T ss_pred ccchhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCCcchHHHHHHHHHHHHHHHhcccCHHHH
Confidence 4555566666667778888888888888999999999998888776555322 222233344555666665421 00
Q ss_pred cCChHHHHHHHHhh---cCCCCCeecccCCCCChhHHHHHH---HHHHHhCcCC-----hh----hHHHHHHHHHHc-cc
Q psy15672 83 CINRPKLKQFLQRL---KAPDGGFHVHDGGEVDIRGVYCAL---CVALLTQVYS-----ED----LFNNTREWLTAC-QT 146 (271)
Q Consensus 83 ~~~~~~~~~~l~~~---q~~dGgf~~~~~~e~d~~~ty~a~---~~l~ll~~~~-----~~----~~~~~~~~l~~~-q~ 146 (271)
..-++++.+|.... ..+||.+-. .|.| +.+-+.+. +.+.+.+.++ .- ...+.++|..+. ..
T Consensus 230 ~~~~~Ra~~fa~~~~~~f~~dG~~~~--~GRS-ltYRfA~~a~~~~~a~~~~lp~~~~~~g~vR~~l~~~lr~~~~~p~~ 306 (361)
T PF10022_consen 230 ARYRQRAQRFAEDYERMFSPDGAAPP--FGRS-LTYRFAAFAFLAAAALAGVLPEPLISPGQVRRALSRVLRWWLEQPGI 306 (361)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcCC--cccc-HHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 11245566665554 458887642 2222 22223333 3444445421 11 223445555554 33
Q ss_pred --CCC----CCCCCCC--CC--CchhhhhhhhhHHHhhccC
Q psy15672 147 --YEG----GFSGYPG--FE--AHGGYTFCGFAALCLLKSE 177 (271)
Q Consensus 147 --~dG----GF~~~p~--~e--s~~~~T~~al~aL~llg~~ 177 (271)
.|| ||.+..- .| +-.+.-|||..++..|+.+
T Consensus 307 f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~Lp 347 (361)
T PF10022_consen 307 FDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLGLP 347 (361)
T ss_pred CCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhcCC
Confidence 345 5654211 12 4556789999999888764
No 67
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=88.17 E-value=10 Score=36.70 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=47.3
Q ss_pred hhhhhhhHHHhhccCC--ccCHHHHHHHHHhccCCCcCCcCCC--------CCCCC-Cc--hhhhhhhhhHHHHHHHhhh
Q psy15672 163 YTFCGFAALCLLKSEH--LCDIKALLRWTTNRQMNFEGGFQGR--------TNKLV-DG--CYSFWQGGLFPLIYRSLMK 229 (271)
Q Consensus 163 ~T~~al~aL~llg~~~--~~~~~~~~~wl~~~Q~~~~GGf~gr--------~~k~~-D~--cyt~w~~~~L~~l~~~~~~ 229 (271)
|.+.+++-+..+-..+ ..-.++..+.+..++.-..||++.. +...+ +. |-|+=++..+.+...+++.
T Consensus 238 y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~ 317 (520)
T PF07944_consen 238 YLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRL 317 (520)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhc
Confidence 3444444444443221 1134566666777665557998877 22222 22 4555556666666666544
Q ss_pred cCCCCCCCccccCH--HHHHHHHHhhhCCCCCC
Q psy15672 230 AGDTCLDGHWLFHH--RALQEYILICCQHFNGG 260 (271)
Q Consensus 230 ~~~~~~~~~~~~~~--~~l~~~il~~~Q~~~GG 260 (271)
.++. ...|. +.+-+-|+ ..|+++||
T Consensus 318 tgd~-----~yaD~~Er~lyN~~l-a~~~~d~~ 344 (520)
T PF07944_consen 318 TGDA-----RYADYYERALYNALL-AGQSPDGG 344 (520)
T ss_pred CCCc-----hHHHHHHHHHhcccc-cccCCCCC
Confidence 4321 11222 55555566 46777665
No 68
>PLN02592 ent-copalyl diphosphate synthase
Probab=87.98 E-value=5.3 Score=40.56 Aligned_cols=116 Identities=19% Similarity=0.136 Sum_probs=76.4
Q ss_pred HHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCC-CCCeecccCCCCChhHHHHHH
Q psy15672 42 LSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAP-DGGFHVHDGGEVDIRGVYCAL 120 (271)
Q Consensus 42 l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~-dGgf~~~~~~e~d~~~ty~a~ 120 (271)
+...|..||+|..+|. +|.+++. .. -.+++.+||.+..+. +|+... .-..|....-+.|
T Consensus 258 v~~~q~~~GS~~~SPS------aTAaaL~-----~~-------~d~~cl~YL~~~~~k~~GgVP~--vyP~d~fE~LwlV 317 (800)
T PLN02592 258 LLKLQCQDGSFLFSPS------STAFALM-----QT-------KDENCLEYLNKAVQRFNGGVPN--VYPVDLFEHIWAV 317 (800)
T ss_pred HhcccCCCCCccCCch------HHHHHHh-----cc-------CchHHHHHHHHHHHHcCCCCCC--CCCCcHHHHHHHH
Confidence 5667888999998764 5655542 11 246889999987654 454321 1245666667888
Q ss_pred HHHHHhCcCC--hhhHHHHHHHHHHcccCCC-CCCCCCCCCCchhhhhhhhhHHHhhccCC
Q psy15672 121 CVALLTQVYS--EDLFNNTREWLTACQTYEG-GFSGYPGFEAHGGYTFCGFAALCLLKSEH 178 (271)
Q Consensus 121 ~~l~ll~~~~--~~~~~~~~~~l~~~q~~dG-GF~~~p~~es~~~~T~~al~aL~llg~~~ 178 (271)
-+|.-+|+.. ...++.++++|-++-..+| ||+. .....|...|.-+.-.|...|..-
T Consensus 318 DtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld~TALaFRLLRqhGy~V 377 (800)
T PLN02592 318 DRLQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDIDDTAMGFRLLRLHGHQV 377 (800)
T ss_pred HHHHHcCCccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCHHHHHHHHHHHHHcCCCC
Confidence 8899898653 3567778888877543333 3431 122467888889999999999753
No 69
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=87.39 E-value=13 Score=37.00 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=72.2
Q ss_pred ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672 9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPK 88 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~ 88 (271)
+.+.+..+||++.+|..||.+++..+.++++.-|...+..| ..+.++-+|+.++..|+....+..+ .++
T Consensus 120 ~~s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kd----------ds~~s~g~al~~aa~L~~~a~l~~~-~~~ 188 (636)
T PF05817_consen 120 EDSSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKD----------DSLLSLGYALHAAAQLSKQADLADI-VER 188 (636)
T ss_pred CCccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHhhccchhhhHH-HHH
Confidence 34556669999999999998886667888888888777663 4566777788888888753111110 122
Q ss_pred HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHH-HhCcC---ChhhHHHHHHHHHHccc
Q psy15672 89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVAL-LTQVY---SEDLFNNTREWLTACQT 146 (271)
Q Consensus 89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~-ll~~~---~~~~~~~~~~~l~~~q~ 146 (271)
+-+=+...-.-||.+-...++-+-+.....++-.|. ..|.. +.+-+-+..+||+++++
T Consensus 189 ieD~v~qaDEv~~~~LqFeggLs~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr~ 250 (636)
T PF05817_consen 189 IEDAVAQADEVDGKYLQFEGGLSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRRS 250 (636)
T ss_pred HHHHHHhhhhhcccceeecCCchhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCC
Confidence 222222222334444333333222222222222222 23432 23446678899999875
No 70
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=87.19 E-value=2.6 Score=37.45 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCCC-C---CCCCchHHHH---HHHHHHHHhCC----CCcCCcC----------ChHHHHHH
Q psy15672 34 DKSCVVNFLSQCQSPNGGFGGG-P---GQDPHIAATY---AAVNCLIILGT----PEAYNCI----------NRPKLKQF 92 (271)
Q Consensus 34 ~~~~~i~~l~~~q~~dGGF~~~-~---~~~~~~~~Ty---~Av~~L~~lg~----~~~~~~~----------~~~~~~~~ 92 (271)
..++.++||++.|.++|||... | ++..| .|| ..+.+|.+|.+ ......+ ..++++++
T Consensus 63 A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~--ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~c 140 (289)
T PF09492_consen 63 AFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDH--ITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDC 140 (289)
T ss_dssp HHHHHHHHHHHHS-TTS--BSECS--SGGGGS--EE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCccCCCCCCCCCc--eEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999863 2 12222 222 22334434321 1111122 25789999
Q ss_pred HHhhcC----CCCCeecccC-----------CC-CChhHHHHHHHHHHHhCcC--Ch---hhHHHHHHHHHHcccCCCCC
Q psy15672 93 LQRLKA----PDGGFHVHDG-----------GE-VDIRGVYCALCVALLTQVY--SE---DLFNNTREWLTACQTYEGGF 151 (271)
Q Consensus 93 l~~~q~----~dGgf~~~~~-----------~e-~d~~~ty~a~~~l~ll~~~--~~---~~~~~~~~~l~~~q~~dGGF 151 (271)
|.++|- +--+|+...+ -| ..+...=++-.+..|+.+. ++ ..++.+++|+.+..-.+.-+
T Consensus 141 iL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 141 ILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp HHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred HHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence 999997 2234543210 01 1111111233334444433 32 34678999999988765544
No 71
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=76.85 E-value=3.7 Score=36.51 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=52.4
Q ss_pred hHHHHHHHHhhcCCCCCeecc-cC-CCCChhHHH---HHHHHHHHh-----CcC-----C-------hhhHHHHHHHHHH
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVH-DG-GEVDIRGVY---CALCVALLT-----QVY-----S-------EDLFNNTREWLTA 143 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~-~~-~e~d~~~ty---~a~~~l~ll-----~~~-----~-------~~~~~~~~~~l~~ 143 (271)
.+++++||.+.|-|+|||-.. |. +..+-..|| ..+-++.+| +.. + ...+++++++|++
T Consensus 64 ~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~ 143 (289)
T PF09492_consen 64 FLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILK 143 (289)
T ss_dssp HHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999753 32 112222233 122333333 111 1 1356889999999
Q ss_pred cccCC-C---CCCCC-------CCC----C-C--chhhhhhhhhHHHhhccCCc---cCHHHHHHHHHhccC
Q psy15672 144 CQTYE-G---GFSGY-------PGF----E-A--HGGYTFCGFAALCLLKSEHL---CDIKALLRWTTNRQM 194 (271)
Q Consensus 144 ~q~~d-G---GF~~~-------p~~----e-s--~~~~T~~al~aL~llg~~~~---~~~~~~~~wl~~~Q~ 194 (271)
+|-.. | +|+.. |-. | + -+..|.-.|.-|.-+-.+.. ..++.++.|+.+..-
T Consensus 144 tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki 215 (289)
T PF09492_consen 144 TQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKI 215 (289)
T ss_dssp HS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSE
T ss_pred HHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcC
Confidence 99633 3 45431 111 1 1 11234444444444433321 146789999987653
No 72
>PLN02279 ent-kaur-16-ene synthase
Probab=76.01 E-value=31 Score=35.19 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=71.3
Q ss_pred HHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccC-CCCChhHHHHHH
Q psy15672 42 LSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDG-GEVDIRGVYCAL 120 (271)
Q Consensus 42 l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-~e~d~~~ty~a~ 120 (271)
|..+|..||+|..+|. +|.+++. .. .-+++.+||.+..+.-||- .|. -..+....-+.|
T Consensus 218 v~~~q~~~Gs~~~SPs------aTAa~l~-----~~-------~~~~~~~yL~~~~~~~~g~--vP~~yp~~~fe~l~lv 277 (784)
T PLN02279 218 VMKYQRKNGSLFNSPS------TTAAAFS-----HL-------QNAGCLRYLRSLLQKFGNA--VPTVYPLDQYARLSMV 277 (784)
T ss_pred HHhhcCCCCCcccCcH------HHHHHHH-----cc-------CChHHHHHHHHHHHhcCCC--CCCCCcccHHHHhHHH
Confidence 5678899999998763 5555542 11 1378999999987654431 232 345666677888
Q ss_pred HHHHHhCcCC--hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccC
Q psy15672 121 CVALLTQVYS--EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSE 177 (271)
Q Consensus 121 ~~l~ll~~~~--~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~ 177 (271)
-+|..+|+.. ...++.+++.+-++.. +| .++...|...|.-+.-.|..-|..
T Consensus 278 d~L~rlGi~~hF~~EI~~~L~~~~~~~~-~~----~~~~~~Dl~~tAl~FRLLR~hGy~ 331 (784)
T PLN02279 278 DTLERLGIDRHFRKEIKSVLDETYRYWL-QG----EEEIFLDLATCALAFRILRLNGYD 331 (784)
T ss_pred HHHHHhCCccccHHHHHHHHHHHHHhhc-cc----ccCCCCCHHHHHHHHHHHHHcCCC
Confidence 8888888653 2456677777765433 22 233345676777777777777765
No 73
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.82 E-value=1.3e+02 Score=27.78 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=105.1
Q ss_pred ChHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCCh
Q psy15672 11 SRAWICYWICHSLSLLDE----PLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINR 86 (271)
Q Consensus 11 ~~~~~~y~~l~~L~lL~~----~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~ 86 (271)
+++.-+-+...+|.+..+ .+++..++++++||.+..... +...+-+......-..|..+|.+ .+....
T Consensus 106 Q~~VEaa~la~aL~~a~~~lW~~L~~~~k~~l~~wL~~~~~~~------~~~nNW~lF~v~v~~~L~~~G~~--~d~~~i 177 (361)
T PF10022_consen 106 QRLVEAASLALALLRAPEWLWDPLDEEEKENLVDWLKQIRGIK------PPDNNWLLFRVMVEAFLKKVGEE--YDEERI 177 (361)
T ss_pred hhHhHHHHHHHHHHHCHHHHHhhCCHHHHHHHHHHHHhcCcCC------CccchhHHHHHHHHHHHHHcCCC--CcHHHH
Confidence 455555555555555543 467888999999999875432 11122333444444566666754 233345
Q ss_pred HHHHHHHHhhcCCCCCeecccCCCCChhH----HHHHHHHHHHhCcCCh----hhHHHHHHHHHHcc---cCCCCCCCCC
Q psy15672 87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRG----VYCALCVALLTQVYSE----DLFNNTREWLTACQ---TYEGGFSGYP 155 (271)
Q Consensus 87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~----ty~a~~~l~ll~~~~~----~~~~~~~~~l~~~q---~~dGGF~~~p 155 (271)
+..++-+.+....||=|.--+...-|=.. =+..+..+.+.+...+ ...+++.+|..... .+||.+- |
T Consensus 178 ~~~l~~~e~~Y~GdGWY~DG~~~~~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~--~ 255 (361)
T PF10022_consen 178 DYDLERIEEWYLGDGWYSDGPEFQFDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAP--P 255 (361)
T ss_pred HHHHHHHHHHhccCCccccCCccCCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC--C
Confidence 66777788888888744322322233211 1123333444444332 23456777776644 3677653 3
Q ss_pred CCCCchhhhhhh---hhHHHhhccCC--ccC-------HHHHHHHHHhc-cC-CCcC----CcCCCCC----CCCCchhh
Q psy15672 156 GFEAHGGYTFCG---FAALCLLKSEH--LCD-------IKALLRWTTNR-QM-NFEG----GFQGRTN----KLVDGCYS 213 (271)
Q Consensus 156 ~~es~~~~T~~a---l~aL~llg~~~--~~~-------~~~~~~wl~~~-Q~-~~~G----Gf~gr~~----k~~D~cyt 213 (271)
-+.| ..|-|.+ ++++++++..+ .++ ..+.++|..++ .. ..+| ||.+.-- ...-+-.-
T Consensus 256 ~GRS-ltYRfA~~a~~~~~a~~~~lp~~~~~~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSp 334 (361)
T PF10022_consen 256 FGRS-LTYRFAAFAFLAAAALAGVLPEPLISPGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSP 334 (361)
T ss_pred cccc-HHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCH
Confidence 3333 3344444 44444555521 111 23455565555 22 1123 5655321 23445567
Q ss_pred hhhhhhHHHHHH
Q psy15672 214 FWQGGLFPLIYR 225 (271)
Q Consensus 214 ~w~~~~L~~l~~ 225 (271)
||+.-++..|.-
T Consensus 335 Ywa~k~Fl~L~L 346 (361)
T PF10022_consen 335 YWASKAFLPLGL 346 (361)
T ss_pred HHHHHHHHHhcC
Confidence 888888876653
No 74
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=59.38 E-value=1.9e+02 Score=28.60 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=34.9
Q ss_pred ccChHHH--HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCC
Q psy15672 9 DASRAWI--CYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFG 53 (271)
Q Consensus 9 d~~~~~~--~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~ 53 (271)
|....|. .++++.+|..+|. .+..++.++|+.+.|.++|.|-
T Consensus 291 ~Y~y~W~RD~~~~a~Al~~~G~---~~~a~~~l~~l~~~q~~~G~~~ 334 (616)
T TIGR01577 291 GYAYCWGRDASYIATALDRAGY---HDRVDRFFRWAMQTQSRDGSWQ 334 (616)
T ss_pred CCceeccccHHHHHHHHHHCCC---HHHHHHHHHHHHHhhCcCCCcc
Confidence 5666776 8899999999987 3467889999999999999863
No 75
>KOG1366|consensus
Probab=55.44 E-value=35 Score=37.15 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHhCcCChhhHHHHHHHHHH-------cccCCCCCCCCCC--CCCchhhhhhhhhHHHhhccCCccC--
Q psy15672 113 IRGVYCALCVALLTQVYSEDLFNNTREWLTA-------CQTYEGGFSGYPG--FEAHGGYTFCGFAALCLLKSEHLCD-- 181 (271)
Q Consensus 113 ~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~-------~q~~dGGF~~~p~--~es~~~~T~~al~aL~llg~~~~~~-- 181 (271)
...++.++-=|...+.++++..+++++||.. -+++||.|+..-. ....+--|..++-++......-.+|
T Consensus 945 faPni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~ 1024 (1436)
T KOG1366|consen 945 FAPNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPN 1024 (1436)
T ss_pred ccchhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHH
Confidence 3445555555555566666777778777764 4568999875433 3344556778888887776543333
Q ss_pred -HHHHHHHHHhccCCCcCCcC
Q psy15672 182 -IKALLRWTTNRQMNFEGGFQ 201 (271)
Q Consensus 182 -~~~~~~wl~~~Q~~~~GGf~ 201 (271)
..++++||.++|.+ +|-|.
T Consensus 1025 ~i~~a~~wl~~~Qk~-~GsF~ 1044 (1436)
T KOG1366|consen 1025 VITQALNWLSQQQKE-NGSFK 1044 (1436)
T ss_pred HHHHHHHHHHHhhcc-CceEe
Confidence 57899999999876 55554
No 76
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=44.87 E-value=98 Score=27.75 Aligned_cols=89 Identities=16% Similarity=0.020 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHhCCCCcC-Cc--CChHHHHHHHHhhcCCCCCeecc---cC--CCCChhHHHHHHHHHHH---hCcCC
Q psy15672 62 IAATYAAVNCLIILGTPEAY-NC--INRPKLKQFLQRLKAPDGGFHVH---DG--GEVDIRGVYCALCVALL---TQVYS 130 (271)
Q Consensus 62 ~~~Ty~Av~~L~~lg~~~~~-~~--~~~~~~~~~l~~~q~~dGgf~~~---~~--~e~d~~~ty~a~~~l~l---l~~~~ 130 (271)
.+..+..+.+|..|...... .. --.++.++.|.+.|.+||.|... |. ...|+..|-.++.+|.. .+..+
T Consensus 190 gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d 269 (336)
T PF07470_consen 190 GWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLD 269 (336)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSST
T ss_pred hHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCc
Confidence 44455555566666431000 00 01356778889999999999754 33 34455555544444422 24443
Q ss_pred h----hhHHHHHHHHHHc-ccCCCC
Q psy15672 131 E----DLFNNTREWLTAC-QTYEGG 150 (271)
Q Consensus 131 ~----~~~~~~~~~l~~~-q~~dGG 150 (271)
. +..+++.+.|.+. -++||-
T Consensus 270 ~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 270 PEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred cHHHHHHHHHHHHHHHhCccCCCCC
Confidence 2 3467788899998 667775
No 77
>COG4289 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.76 E-value=2.9e+02 Score=25.59 Aligned_cols=167 Identities=14% Similarity=0.152 Sum_probs=82.4
Q ss_pred ccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCC---ch-HHHHHHHHHHHHhCCCCcC
Q psy15672 6 NCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDP---HI-AATYAAVNCLIILGTPEAY 81 (271)
Q Consensus 6 ~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~---~~-~~Ty~Av~~L~~lg~~~~~ 81 (271)
+..|.|-.-+--.+=.++.-||.+.+....+....=|.+....||=|+.++..-- +. .+-++.+--|.++..+. .
T Consensus 161 ~~~dnNW~lF~~mVd~~~~~lg~e~D~sltd~~lk~l~~fyigdGwyrDG~~~r~DyYnaf~~h~y~l~~lrli~pd~-~ 239 (458)
T COG4289 161 QYADNNWKLFRVMVDFALDSLGIEGDRSLTDDKLKELDEFYIGDGWYRDGNQRRYDYYNAFAMHFYGLIYLRLINPDY-D 239 (458)
T ss_pred ccccccchhhHHHHHHHHHHccCcccchhHHHHHHHhhheeecccccccCCccchhhhhhhhhhhhhhhhhhhcCcHH-H
Confidence 4445554444444445677788776655566666677777777776664432111 11 11123343444444321 1
Q ss_pred CcCChHHHHHHH---HhhcCCCCCeecccCCCCChhHHH-----HHHHHHHHhCcCC---hh---hHHHHHHHHHHcccC
Q psy15672 82 NCINRPKLKQFL---QRLKAPDGGFHVHDGGEVDIRGVY-----CALCVALLTQVYS---ED---LFNNTREWLTACQTY 147 (271)
Q Consensus 82 ~~~~~~~~~~~l---~~~q~~dGgf~~~~~~e~d~~~ty-----~a~~~l~ll~~~~---~~---~~~~~~~~l~~~q~~ 147 (271)
...-++++.+|. .....|||++-.. |.+ .|| .-++.|+.+.... .+ ...+..+|+...-..
T Consensus 240 ~~r~r~ra~~fa~~~r~~i~pdG~~p~f--GRS---~tYR~Av~~~laala~~~~~p~~~geik~al~a~LR~~~e~p~a 314 (458)
T COG4289 240 AKRYRERAAEFAADFRYWITPDGTIPFF--GRS---ATYRFAVSGFLAALAFADTEPLPWGEIKGALLAHLRWWAEKPIA 314 (458)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccc--chh---hHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHhcCCcc
Confidence 111255677774 4456799977422 211 223 1223344443221 11 234456666655432
Q ss_pred --CC----CCCC-CCC-CC--CchhhhhhhhhHHHhhccCC
Q psy15672 148 --EG----GFSG-YPG-FE--AHGGYTFCGFAALCLLKSEH 178 (271)
Q Consensus 148 --dG----GF~~-~p~-~e--s~~~~T~~al~aL~llg~~~ 178 (271)
|| |..+ .+. .| +.++..|||.-++.-|+...
T Consensus 315 dr~G~lsiG~~~~q~~l~enY~s~gS~ywa~kaflpL~lp~ 355 (458)
T COG4289 315 DRDGVLSIGYFYPQLRLSENYNSAGSPYWAFKAFLPLALPE 355 (458)
T ss_pred cccCcceeecccCchhhhhhcCCCCchHHHHHHhhhccCCC
Confidence 33 2222 111 12 46678899999987776643
No 78
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=41.13 E-value=2.4e+02 Score=25.45 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=57.2
Q ss_pred hHHHHHHHHhh--cCCCCCeecc--cCCC---------CChhHHHHHHHHHHHhCcCC-hhhHHHHHHHHHHcc-cCC-C
Q psy15672 86 RPKLKQFLQRL--KAPDGGFHVH--DGGE---------VDIRGVYCALCVALLTQVYS-EDLFNNTREWLTACQ-TYE-G 149 (271)
Q Consensus 86 ~~~~~~~l~~~--q~~dGgf~~~--~~~e---------~d~~~ty~a~~~l~ll~~~~-~~~~~~~~~~l~~~q-~~d-G 149 (271)
.+.++.|.... ..+.|||... ..+. ...|.+|+-..+..+.+... .+..+++.+||.+.- ..+ |
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~G 95 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHG 95 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCC
Confidence 46778887773 3457888753 1111 12344444333333444332 235678899999844 445 8
Q ss_pred CCCCC------CCCC-CchhhhhhhhhHHHhhcc---C-C-ccCHHHHHHHHHhccCCCcCCc
Q psy15672 150 GFSGY------PGFE-AHGGYTFCGFAALCLLKS---E-H-LCDIKALLRWTTNRQMNFEGGF 200 (271)
Q Consensus 150 GF~~~------p~~e-s~~~~T~~al~aL~llg~---~-~-~~~~~~~~~wl~~~Q~~~~GGf 200 (271)
||-.. |... .|...-..++.+|+-+.+ . . ....+++.+++.++..+..||+
T Consensus 96 g~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 96 GWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred CEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 87432 2111 122111223333333222 1 1 1246788888888764224655
No 79
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=35.67 E-value=63 Score=31.92 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCee
Q psy15672 63 AATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFH 104 (271)
Q Consensus 63 ~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~ 104 (271)
+.+...+.+|..+|..+ ..++.++|+.+.|.+||.|.
T Consensus 298 RD~~~~a~Al~~~G~~~-----~a~~~l~~l~~~q~~~G~~~ 334 (616)
T TIGR01577 298 RDASYIATALDRAGYHD-----RVDRFFRWAMQTQSRDGSWQ 334 (616)
T ss_pred ccHHHHHHHHHHCCCHH-----HHHHHHHHHHHhhCcCCCcc
Confidence 45677778888998642 37789999999999999874
No 80
>PRK13617 psbV cytochrome c-550; Provisional
Probab=33.64 E-value=59 Score=26.54 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=40.5
Q ss_pred CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCC-CCCC
Q psy15672 84 INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEG-GFSG 153 (271)
Q Consensus 84 ~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dG-GF~~ 153 (271)
-+++.+++||+.=+..||.+.......+-.+. .+.-....+++++.+.+..||+......| +||+
T Consensus 100 ~nv~aLv~yikdP~sydg~~s~~e~~P~~~~~-----~imP~~~~LsdeeL~alAayLl~~~k~~~~~wgg 165 (170)
T PRK13617 100 DNVDALVDYLKDPTSYDGEYSIADLHPSMRSA-----DLYPAMRDLNDEDLRLMAGYILVAPKVQGTQWGG 165 (170)
T ss_pred CCHHHHHHHHhChHhhcchhhccccCcccccc-----ccCcccCCCCHHHHHHHHHHHHhcccccccccCC
Confidence 46899999999999999886542111000000 00111233567889999999999866555 5653
No 81
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=32.90 E-value=78 Score=28.39 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCCCCCCCCC---CC--CCCchHHHHHHHHHHHH---hCCC
Q psy15672 12 RAWICYWICHSLSLLDEPLSS-----ADKSCVVNFLSQCQSPNGGFGGG---PG--QDPHIAATYAAVNCLII---LGTP 78 (271)
Q Consensus 12 ~~~~~y~~l~~L~lL~~~~~~-----~~~~~~i~~l~~~q~~dGGF~~~---~~--~~~~~~~Ty~Av~~L~~---lg~~ 78 (271)
+-|.+|=.+-.|..|..+-+. ...+++++.|...|.+||.|... |. ...+...|..++.+|.. .|..
T Consensus 189 ~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~ 268 (336)
T PF07470_consen 189 NGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLL 268 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCC
Confidence 347788888888888552111 12345677888999999988753 22 33454555544444422 2321
Q ss_pred Cc-CCcCChHHHHHHHHhh-cCCCCC
Q psy15672 79 EA-YNCINRPKLKQFLQRL-KAPDGG 102 (271)
Q Consensus 79 ~~-~~~~~~~~~~~~l~~~-q~~dGg 102 (271)
+. .-....+++++.|.+. -++||.
T Consensus 269 d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 269 DPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp THHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred ccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 00 0012356788888888 788887
No 82
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=32.01 E-value=85 Score=30.33 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=27.6
Q ss_pred CCCchHHHHHHHH-HHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeec
Q psy15672 58 QDPHIAATYAAVN-CLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHV 105 (271)
Q Consensus 58 ~~~~~~~Ty~Av~-~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~ 105 (271)
...++..-..|++ ++...+++ .+. -..+++|+.|.++|.+||-++.
T Consensus 58 ~~~~~g~wl~a~a~~~~~~~D~-~l~-~~~d~~V~~l~~~Q~~dGYl~~ 104 (520)
T PF07944_consen 58 RGHDVGKWLEAAAYAYAYTGDP-ELK-AKADEIVDELAAAQQPDGYLGT 104 (520)
T ss_pred CCCcHHHHHHHHHHHHHHCCCH-HHH-HHHHHHHHHHHHhccCCceecc
Confidence 3445555555544 34444442 111 1267799999999999986654
No 83
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=31.51 E-value=3.4e+02 Score=30.41 Aligned_cols=125 Identities=16% Similarity=0.053 Sum_probs=67.2
Q ss_pred hHHHHHHHHhhcCCCCCeecccC-CCCChhHHHHHHHHHHHhC---c-CChhhHHHHHH-HHHHcccCCC-CCCCCCCCC
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDG-GEVDIRGVYCALCVALLTQ---V-YSEDLFNNTRE-WLTACQTYEG-GFSGYPGFE 158 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~-~e~d~~~ty~a~~~l~ll~---~-~~~~~~~~~~~-~l~~~q~~dG-GF~~~p~~e 158 (271)
.+.++.-|.++|.++|+|+...+ ++.|...|-+++--|.-.. . .+...+++..+ ++...|+. | .++.. -..
T Consensus 1201 l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~e~g~~vp~~~~~~~~~~~~~~l~n~-~~~~~~~-~~l 1278 (1621)
T COG2373 1201 LQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAREQGYSVPSDALNQMLERLLEYLQNP-GLAYADE-VEL 1278 (1621)
T ss_pred HHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhhhcCcCCCHHHHHHHHHHHHHHHhCc-Cccccch-hhh
Confidence 45577778899999999998755 7888887777665544332 1 23455666655 44445543 2 12111 000
Q ss_pred CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672 159 AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 159 s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~ 226 (271)
.-..+-.+++-.|+-.+.. ...-++++.+++ .+.....--..+..+++.+++..
T Consensus 1279 ~~~~~~ay~L~~lA~~~~~----~~~~lr~~~d~~----------~~~~~s~l~~a~laa~~~~~~d~ 1332 (1621)
T COG2373 1279 RRRALQAYALYVLARNGDA----ALADLRGILDQS----------LDDWESPLALAQLAAALKLLGDK 1332 (1621)
T ss_pred hHHHHHHHHHHHHhhcCCc----ccchhhhhcccc----------cccccChhHHHHHHHHHHHHHHh
Confidence 1112233344444444422 122344444431 23344455567788888888765
No 84
>COG5486 Predicted metal-binding integral membrane protein [Function unknown]
Probab=29.97 E-value=52 Score=28.50 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCC------CCCcCCCCC
Q psy15672 215 WQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHF------NGGLLDKPE 266 (271)
Q Consensus 215 w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~------~GGf~~~p~ 266 (271)
|+.+++.++.+- ++....+++--++.||+| +++||++|-
T Consensus 165 ~l~gg~~L~vAG-------------lYQft~LK~~CL~qCrtPl~fl~shw~fr~~p~ 209 (283)
T COG5486 165 GLAGGLTLLVAG-------------LYQFTTLKHACLSQCRTPLSFLFSHWRFRAKPV 209 (283)
T ss_pred hHHHHHHHHHhh-------------hhhhccHHHHHHHHccchHHHHHHhcCcccCcc
Confidence 455666665543 234466777777789987 699999884
No 85
>PRK13621 psbV cytochrome c-550; Provisional
Probab=28.26 E-value=1.2e+02 Score=24.69 Aligned_cols=52 Identities=10% Similarity=0.181 Sum_probs=34.6
Q ss_pred hHHHHHHHHhhcCCCCC---eecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCC
Q psy15672 86 RPKLKQFLQRLKAPDGG---FHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSG 153 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGg---f~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~ 153 (271)
++.+++|++.-+.-||. |...+.. .+.+++++++++..||+..-...+||++
T Consensus 109 I~~LV~~iknPms~kg~~~~~~~~mps----------------~~~LSdeEL~aIAaYLL~qA~~~~~Wg~ 163 (170)
T PRK13621 109 IAALVAYQRDPMSYDGSEESYGCRQVP----------------EDWMTDEELQNLAAFILRAAQKAPGWGT 163 (170)
T ss_pred HHHHHHHhhCCCCCCcccccccccCCc----------------cCCCCHHHHHHHHHHHHhhhhhccCCCC
Confidence 35677788887777663 3221110 0345678999999999987766778874
No 86
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=27.11 E-value=6.5e+02 Score=25.24 Aligned_cols=142 Identities=12% Similarity=-0.039 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCC--CCCC-----CchhhhhhhhhHHHhhccCCc----cCHHH
Q psy15672 116 VYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGY--PGFE-----AHGGYTFCGFAALCLLKSEHL----CDIKA 184 (271)
Q Consensus 116 ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~--p~~e-----s~~~~T~~al~aL~llg~~~~----~~~~~ 184 (271)
.+.++.+|..+|. ....++..+||.+.|..+|.|-.. ++++ -..-.|...|-++..+.+... ..+++
T Consensus 300 ~a~~a~AL~~~G~--~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~~~~vk~ 377 (648)
T TIGR01535 300 LYQVANAFLAAGD--VDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFYDKMLKP 377 (648)
T ss_pred HHHHHHHHHHCCC--HHHHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3444455566664 466888999999999999886322 1111 112222223333333333221 23688
Q ss_pred HHHHHHhcc-CCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCc
Q psy15672 185 LLRWTTNRQ-MNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGL 261 (271)
Q Consensus 185 ~~~wl~~~Q-~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf 261 (271)
+++||...- .+..|=+=-|.+..+-+..+ ++++|......-...+.+-....|.--.+.+++-|...|=++.|++
T Consensus 378 aadfl~~~~p~p~~d~WEer~g~~~~T~a~--v~aaL~~Aa~iA~~~g~~~~a~~w~~~Ad~i~~~i~~~~~~~~g~~ 453 (648)
T TIGR01535 378 AADFIVKNGPKTGQERWEEIGGYSPSTLAA--EIAGLTAAADIAEQNGDAGSAQKYRETADNWQKLIENWTFTTNGPL 453 (648)
T ss_pred HHHHHHHcCCCCCCCcccccCCcCchhHHH--HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCCCccc
Confidence 999998852 22233333333333322222 3355555444332222210001222233566666776666766433
No 87
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=26.48 E-value=1.1e+02 Score=24.60 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHcccCCCC---CC-CCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672 131 EDLFNNTREWLTACQTYEGG---FS-GYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 131 ~~~~~~~~~~l~~~q~~dGG---F~-~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
.++++.+++||+.-+.++|. |. ..|.. ......+++.++.||+..-.. .+||.+
T Consensus 95 Rd~I~~Lv~~iknP~s~kG~~~~~~~~mp~~-----------------~~LsdeEL~aIAaYLl~qa~~-~~~Wg~ 152 (155)
T TIGR03046 95 RDTIQSLVAYQRDPMSYDGSEESYGCRPVPE-----------------DWMDDEEVENLAAFILRAAQK-APGWGV 152 (155)
T ss_pred hHHHHHHHHHhhCCcccCcccccccccCCcc-----------------cCCCHHHHHHHHHHHHHhhhh-cCCCCC
Confidence 35689999999999988773 11 11111 223345688999999975333 567765
No 88
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=24.69 E-value=99 Score=30.92 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=50.9
Q ss_pred cChHHH--HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCC--C-C----CCCchHHHHHHHHHHHHhCCCCc
Q psy15672 10 ASRAWI--CYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGG--P-G----QDPHIAATYAAVNCLIILGTPEA 80 (271)
Q Consensus 10 ~~~~~~--~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~--~-~----~~~~~~~Ty~Av~~L~~lg~~~~ 80 (271)
+.-.|. .|+++.+|..+|. ...-++.++||.+.|.++|.|-.. . | .+-.+..|-.-+.++..+.....
T Consensus 292 YryvW~RD~a~~a~AL~~~G~---~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~ 368 (648)
T TIGR01535 292 YHLVWPRDLYQVANAFLAAGD---VDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDH 368 (648)
T ss_pred eEEEehhhHHHHHHHHHHCCC---HHHHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCc
Confidence 334454 8999999999997 346789999999999999987531 0 1 11112233333333333322110
Q ss_pred -CCcCChHHHHHHHHhhc
Q psy15672 81 -YNCINRPKLKQFLQRLK 97 (271)
Q Consensus 81 -~~~~~~~~~~~~l~~~q 97 (271)
.....++++++||.+.-
T Consensus 369 ~~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 369 AFYDKMLKPAADFIVKNG 386 (648)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 01123788999998864
No 89
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=23.35 E-value=79 Score=22.24 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHcccCCCCCCCCCC
Q psy15672 131 EDLFNNTREWLTACQTYEGGFSGYPG 156 (271)
Q Consensus 131 ~~~~~~~~~~l~~~q~~dGGF~~~p~ 156 (271)
.+.++.+++||++.-+-.-||-...+
T Consensus 55 teIiEnAVefiLrSMtR~tgF~E~~d 80 (88)
T PF15144_consen 55 TEIIENAVEFILRSMTRSTGFMEFED 80 (88)
T ss_pred HHHHHHHHHHHHHHhhcccCceecCC
Confidence 57899999999998877778865433
No 90
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=22.76 E-value=2e+02 Score=23.11 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=34.6
Q ss_pred hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCC
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSG 153 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~ 153 (271)
++.+++|++.-+.-+|.-.... .++ ...+.+++++++++..||+..-...+||++
T Consensus 98 I~~Lv~~iknP~s~kG~~~~~~---~~m----------p~~~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 98 IQSLVAYQRDPMSYDGSEESYG---CRP----------VPEDWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHhhCCcccCccccccc---ccC----------CcccCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 4667888888777776321100 000 000335678899999999987767788874
No 91
>PRK13621 psbV cytochrome c-550; Provisional
Probab=21.73 E-value=1.7e+02 Score=23.97 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=36.8
Q ss_pred ChhhHHHHHHHHHHcccCCCC---CCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672 130 SEDLFNNTREWLTACQTYEGG---FSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 130 ~~~~~~~~~~~l~~~q~~dGG---F~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
+.+.++.+++|++.-+.++|. |..++... ......+.+.+..||+..-.. .+||.+
T Consensus 105 ~rd~I~~LV~~iknPms~kg~~~~~~~~mps~----------------~~LSdeEL~aIAaYLL~qA~~-~~~Wg~ 163 (170)
T PRK13621 105 PRDNIAALVAYQRDPMSYDGSEESYGCRQVPE----------------DWMTDEELQNLAAFILRAAQK-APGWGT 163 (170)
T ss_pred chHHHHHHHHHhhCCCCCCcccccccccCCcc----------------CCCCHHHHHHHHHHHHhhhhh-ccCCCC
Confidence 346678999999999988873 33332211 223345788999999875333 467765
No 92
>PRK13619 psbV cytochrome c-550; Provisional
Probab=20.10 E-value=1.7e+02 Score=23.68 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=40.5
Q ss_pred cCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCC
Q psy15672 83 CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSG 153 (271)
Q Consensus 83 ~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~ 153 (271)
+-+++.+++|+++=-..||.........+-.++ -+.-.+..+++++...+..||+..-...|+||+
T Consensus 91 RdnV~aLVdymk~PtsyDG~~~~a~~hpsi~~~-----di~P~mr~LtdedL~~iAg~IL~~pk~~~~WGG 156 (160)
T PRK13619 91 RDNVLALVDYLKHPTSYDGEDDYSELHPNVSRP-----DIFPELRNFTEDDLYDVAGYMLVAPKLDERWGG 156 (160)
T ss_pred cccHHHHHHHHhCCcccccchhhhhhccccccc-----ccccccCCCCHHHHHHHHHHHHhccccccccCC
Confidence 346888999999888888876432110000000 000111224577889999999987777788875
No 93
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=20.09 E-value=2.4e+02 Score=22.33 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCC
Q psy15672 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGG 260 (271)
Q Consensus 181 ~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GG 260 (271)
+.+++|+|..+|+....=-...|-+....-|.++ +..+|...+.. ...++.+.+.|.++|.. -|
T Consensus 1 ~ie~~I~w~~~r~~~v~YSm~~R~G~~s~DCSs~-V~~ALr~aG~~---------~~g~~~nT~tl~~~L~~------~G 64 (145)
T PF05382_consen 1 NIEKAINWMEARKGKVTYSMDSRNGPDSYDCSSF-VYQALRAAGFK---------IPGSAGNTETLHDWLKK------NG 64 (145)
T ss_pred CHHHHHHHHHHhcCCceEhhhhcCCCCcCchHHH-HHHHHHHcCCC---------CCCCccCHHHHHHHHhh------CC
Confidence 4689999999997642111224444444467766 55556554442 12356889999998762 34
Q ss_pred cCCCCC
Q psy15672 261 LLDKPE 266 (271)
Q Consensus 261 f~~~p~ 266 (271)
|.+.+.
T Consensus 65 ~~~I~~ 70 (145)
T PF05382_consen 65 FKKISE 70 (145)
T ss_pred cEEecc
Confidence 655543
Done!