Query psy15672
Match_columns 271
No_of_seqs 193 out of 1684
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 18:37:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7a_B Farnesyltransferase bet 100.0 2.1E-70 7.2E-75 508.4 24.2 271 1-271 77-408 (520)
2 3dra_B Geranylgeranyltransfera 100.0 1.4E-69 4.7E-74 492.1 22.7 259 1-271 20-347 (390)
3 2h6f_B Protein farnesyltransfe 100.0 1.1E-66 3.8E-71 481.9 26.3 271 1-271 89-360 (437)
4 1n4q_B Geranyltransferase type 100.0 9.9E-67 3.4E-71 474.1 21.1 252 1-271 36-319 (377)
5 3dss_B Geranylgeranyl transfer 100.0 4.2E-66 1.4E-70 464.1 24.8 253 1-271 35-288 (331)
6 3dss_B Geranylgeranyl transfer 100.0 1.6E-46 5.5E-51 336.9 22.1 214 9-226 91-304 (331)
7 1n4q_B Geranyltransferase type 100.0 8.1E-45 2.8E-49 330.1 23.3 214 8-226 117-335 (377)
8 3dra_B Geranylgeranyltransfera 100.0 2.4E-44 8.2E-49 326.6 21.9 218 8-226 89-363 (390)
9 3q7a_B Farnesyltransferase bet 100.0 8.7E-43 3E-47 323.6 18.2 216 8-226 135-424 (520)
10 2h6f_B Protein farnesyltransfe 100.0 1.6E-42 5.4E-47 320.5 19.9 213 9-225 146-375 (437)
11 2sqc_A Squalene-hopene cyclase 99.9 6.3E-23 2.2E-27 198.7 21.3 242 10-266 308-596 (631)
12 2sqc_A Squalene-hopene cyclase 99.9 9.2E-23 3.2E-27 197.5 19.5 198 10-214 372-608 (631)
13 1w6k_A Lanosterol synthase; cy 99.9 1.2E-22 4.2E-27 199.1 19.8 241 11-266 384-692 (732)
14 1w6k_A Lanosterol synthase; cy 99.9 2.3E-21 7.9E-26 190.1 19.9 201 10-212 451-701 (732)
15 1qqf_A Protein (complement C3D 99.7 2.3E-15 7.9E-20 131.6 18.3 189 11-202 7-259 (277)
16 2wy7_A Complement C3D fragment 99.7 1.7E-15 5.7E-20 134.6 17.3 199 1-202 13-275 (310)
17 1hzf_A Complement factor C4A; 99.5 4.8E-13 1.7E-17 121.4 13.3 199 2-202 51-345 (367)
18 1qqf_A Protein (complement C3D 99.4 1.6E-12 5.3E-17 113.5 12.7 163 86-263 40-259 (277)
19 2wy7_A Complement C3D fragment 99.4 7.9E-12 2.7E-16 110.8 14.2 162 86-262 56-274 (310)
20 2pn5_A TEP1R, thioester-contai 99.2 2.1E-10 7.1E-15 119.5 16.7 210 2-224 835-1102(1325)
21 1hzf_A Complement factor C4A; 99.2 2.5E-10 8.7E-15 103.5 13.0 107 86-192 93-226 (367)
22 2hr0_B Complement C3 alpha' ch 99.1 1.3E-09 4.4E-14 109.7 17.5 230 2-262 259-519 (915)
23 4acq_A Alpha-2-macroglobulin; 99.1 1.1E-09 3.7E-14 114.7 16.8 216 1-222 945-1243(1451)
24 2b39_A C3; thioester, immune d 98.7 7E-07 2.4E-11 94.9 19.9 231 2-263 1006-1267(1661)
25 1r76_A Pectate lyase; A-helica 98.6 7.9E-08 2.7E-12 87.0 8.7 165 34-201 82-334 (408)
26 2bb6_A TCII, TC II, transcobal 98.6 8.2E-07 2.8E-11 80.7 14.7 141 11-173 134-283 (414)
27 2pn5_A TEP1R, thioester-contai 98.6 1.7E-07 5.8E-12 97.7 10.7 114 86-199 874-1003(1325)
28 4fxk_B Complement C4-A alpha c 98.6 4E-06 1.4E-10 82.7 19.8 105 1-105 327-440 (767)
29 2hr0_B Complement C3 alpha' ch 98.5 1.2E-06 4.1E-11 88.1 14.7 175 9-202 324-520 (915)
30 1gxm_A Pectate lyase; mechanis 98.5 7.3E-08 2.5E-12 84.9 4.3 156 37-194 35-251 (332)
31 4acq_A Alpha-2-macroglobulin; 98.4 2.1E-06 7.2E-11 90.0 13.9 107 86-192 985-1108(1451)
32 1r76_A Pectate lyase; A-helica 98.4 2.5E-07 8.4E-12 83.8 5.6 118 34-152 176-334 (408)
33 3cu7_A Complement C5; Mg domai 98.3 5.8E-06 2E-10 88.0 15.1 176 8-194 1010-1217(1676)
34 2bb6_A TCII, TC II, transcobal 98.3 5.4E-06 1.9E-10 75.3 12.0 124 60-201 134-269 (414)
35 3prx_B Cobra venom factor; imm 98.2 1.6E-07 5.5E-12 99.1 0.0 162 40-204 1037-1251(1642)
36 2pmv_A Gastric intrinsic facto 97.8 0.00013 4.3E-09 66.0 11.1 133 14-173 115-259 (399)
37 4fxk_B Complement C4-A alpha c 97.8 0.0014 4.9E-08 64.5 19.5 182 9-202 393-622 (767)
38 2b39_A C3; thioester, immune d 97.8 0.00055 1.9E-08 72.9 17.5 176 9-202 1071-1267(1661)
39 3cu7_A Complement C5; Mg domai 97.8 0.00075 2.6E-08 72.0 17.6 183 7-203 1070-1287(1676)
40 1gxm_A Pectate lyase; mechanis 97.7 1.5E-05 5.2E-10 70.1 3.8 117 88-205 35-193 (332)
41 2pmv_A Gastric intrinsic facto 97.5 0.00028 9.7E-09 63.8 8.3 113 67-201 119-245 (399)
42 3prx_B Cobra venom factor; imm 97.4 2.3E-05 7.9E-10 82.9 0.0 105 88-192 1034-1162(1642)
43 3p5p_A Taxadiene synthase; cla 96.8 0.0037 1.3E-07 61.3 9.3 167 35-226 55-262 (764)
44 3sdr_A Alpha-bisabolene syntha 96.7 0.0051 1.7E-07 60.8 9.0 169 35-226 103-314 (817)
45 3sdr_A Alpha-bisabolene syntha 93.8 0.27 9.2E-06 48.6 9.9 103 35-145 56-163 (817)
46 3s9v_A Abietadiene synthase, c 93.3 0.23 8E-06 48.8 8.4 101 35-144 33-135 (785)
47 3pya_A ENT-copalyl diphosphate 92.6 0.13 4.3E-06 50.2 5.3 59 35-97 52-112 (727)
48 3s9v_A Abietadiene synthase, c 92.5 0.13 4.6E-06 50.5 5.4 58 36-97 77-136 (785)
49 3p5p_A Taxadiene synthase; cla 91.7 0.46 1.6E-05 46.6 8.1 103 34-145 9-115 (764)
50 3pya_A ENT-copalyl diphosphate 78.6 9 0.00031 37.2 9.3 117 43-181 194-315 (727)
51 3k11_A Putative glycosyl hydro 71.2 61 0.0021 29.4 12.7 164 34-200 169-371 (445)
52 1wgn_A UBAP1, ubiquitin associ 58.9 15 0.00052 23.7 4.2 28 67-101 35-62 (63)
53 4ae4_A Ubiquitin-associated pr 51.1 17 0.00059 26.6 4.1 71 68-145 25-115 (118)
54 3pmm_A Putative cytoplasmic pr 44.4 60 0.0021 28.6 7.3 94 61-154 235-342 (382)
55 3pmm_A Putative cytoplasmic pr 43.9 1.1E+02 0.0037 27.0 8.9 94 12-105 235-341 (382)
56 3k11_A Putative glycosyl hydro 40.1 65 0.0022 29.2 6.9 93 12-104 268-372 (445)
57 2dna_A Unnamed protein product 35.8 41 0.0014 22.0 3.6 17 85-101 47-63 (67)
58 3ren_A Glycosyl hydrolase, fam 34.5 94 0.0032 27.3 6.8 152 10-172 166-343 (350)
59 1vej_A Riken cDNA 4931431F19; 33.7 49 0.0017 22.1 3.8 27 68-101 47-73 (74)
60 1nc5_A Hypothetical protein YT 29.6 1.7E+02 0.006 25.3 7.9 92 12-103 215-324 (373)
61 1fp3_A N-acyl-D-glucosamine 2- 28.1 2.3E+02 0.0078 24.5 8.5 70 35-106 19-107 (402)
62 2dah_A Ubiquilin-3; UBA domain 27.8 81 0.0028 19.4 3.8 25 68-99 27-51 (54)
63 1vg5_A RSGI RUH-014, rhomboid 27.1 71 0.0024 21.2 3.7 26 68-100 46-71 (73)
64 1wiv_A UBP14, ubiquitin-specif 27.0 64 0.0022 21.3 3.5 25 167-195 46-70 (73)
65 2cpw_A CBL-interacting protein 24.9 74 0.0025 20.4 3.4 26 167-195 36-61 (64)
66 2knz_A Ubiquilin-4; cytoplasm, 22.8 93 0.0032 19.0 3.4 24 67-97 28-51 (53)
67 1wji_A Tudor domain containing 21.5 1E+02 0.0035 19.6 3.5 26 68-100 26-51 (63)
68 2xl1_A Arginine attenuator pep 20.9 19 0.00066 18.2 -0.1 14 2-15 5-20 (26)
69 1nc5_A Hypothetical protein YT 20.2 2.7E+02 0.0093 24.0 7.3 65 87-151 244-324 (373)
No 1
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=2.1e-70 Score=508.42 Aligned_cols=271 Identities=45% Similarity=0.770 Sum_probs=243.3
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCC--CCCCchHHHHHHHHHHHHhCCC
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGP--GQDPHIAATYAAVNCLIILGTP 78 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~--~~~~~~~~Ty~Av~~L~~lg~~ 78 (271)
||.+|+++|++|+|++||+|++|.+|+..++..+++++++||++||+++|||++.+ ++.+|+.+||+||++|.+++..
T Consensus 77 LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~ 156 (520)
T 3q7a_B 77 LPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGND 156 (520)
T ss_dssp BCGGGGGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBS
T ss_pred CChhhhhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCcc
Confidence 79999999999999999999999999988888899999999999999999999999 8999999999999999999974
Q ss_pred ---CcCCcCC--hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCC
Q psy15672 79 ---EAYNCIN--RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSG 153 (271)
Q Consensus 79 ---~~~~~~~--~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~ 153 (271)
+.++.+| ++++++||+++|++||+|....+++.|+|+||||++++.++|..+.++++++++||++||++||||+.
T Consensus 157 ~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 157 SSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp STTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred ccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccC
Confidence 2345678 99999999999999999999888999999999999999999998889999999999999999999999
Q ss_pred -----------------------CCCCCCchhhhhhhhhHHHhhccCC------ccCHHHHHHHHHhccCC--CcCCcCC
Q psy15672 154 -----------------------YPGFEAHGGYTFCGFAALCLLKSEH------LCDIKALLRWTTNRQMN--FEGGFQG 202 (271)
Q Consensus 154 -----------------------~p~~es~~~~T~~al~aL~llg~~~------~~~~~~~~~wl~~~Q~~--~~GGf~g 202 (271)
.|+.|+|++|||||||+|++|++.+ .+|.+++++||.+||.. ..|||+|
T Consensus 237 ~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~G 316 (520)
T 3q7a_B 237 ASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRG 316 (520)
T ss_dssp CEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBS
T ss_pred ccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccC
Confidence 6899999999999999999999963 57899999999999973 2599999
Q ss_pred CCCCCCCchhhhhhhhhHHHHHHHhhhcC------------CCCCCCc--------cccCHHHHHHHHHhhhCCCC---C
Q psy15672 203 RTNKLVDGCYSFWQGGLFPLIYRSLMKAG------------DTCLDGH--------WLFHHRALQEYILICCQHFN---G 259 (271)
Q Consensus 203 r~~k~~D~cyt~w~~~~L~~l~~~~~~~~------------~~~~~~~--------~~~~~~~l~~~il~~~Q~~~---G 259 (271)
|+||++|+|||||++++|.||+....... ++....+ .++|+++|++|||.+||++. |
T Consensus 317 R~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~G 396 (520)
T 3q7a_B 317 RTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTG 396 (520)
T ss_dssp STTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------CCCSSCHHHHHHHHHHTTBCCTTSSC
T ss_pred CCCCCCchhhhhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCC
Confidence 99999999999999999999998621100 0001112 36899999999998899997 9
Q ss_pred CcCCCCCCCCCC
Q psy15672 260 GLLDKPENMVAS 271 (271)
Q Consensus 260 Gf~~~p~~~~d~ 271 (271)
||+|+|++++|+
T Consensus 397 Gf~DkPg~~pD~ 408 (520)
T 3q7a_B 397 GLRDKPGKRPDQ 408 (520)
T ss_dssp CBCSSTTSCCCH
T ss_pred CCCCCCCCCcch
Confidence 999999999994
No 2
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=1.4e-69 Score=492.06 Aligned_cols=259 Identities=29% Similarity=0.423 Sum_probs=234.5
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCCC----CCCCCCC-----C---CCCchHHHHH
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQSPN----GGFGGGP-----G---QDPHIAATYA 67 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~~d----GGF~~~~-----~---~~~~~~~Ty~ 67 (271)
||++|+++|++|+|++||+|++|++|+.. +.+.+++++++||++||.++ |||++.+ + +.+|+.+||+
T Consensus 20 Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~ 99 (390)
T 3dra_B 20 LPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLF 99 (390)
T ss_dssp CCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHH
T ss_pred CCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHH
Confidence 79999999999999999999999999985 35678999999999997653 9999985 4 6799999999
Q ss_pred HHHHHHHhCCCCcCCcCChHHHHHHHHhhcC---C-CCCeeccc-----------CCCCChhHHHHHHHHHHHhCcCC--
Q psy15672 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKA---P-DGGFHVHD-----------GGEVDIRGVYCALCVALLTQVYS-- 130 (271)
Q Consensus 68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~---~-dGgf~~~~-----------~~e~d~~~ty~a~~~l~ll~~~~-- 130 (271)
||++|.+||.+ .++.+|++++++||+++|+ + ||||...+ ++|.|+|++|||++++++|+..+
T Consensus 100 Al~~L~ilg~~-~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~ 178 (390)
T 3dra_B 100 ALYNLLILKSP-YHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNN 178 (390)
T ss_dssp HHHHHHHTTCC-GGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHhCch-hhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCccc
Confidence 99999999986 4578999999999999999 7 99999654 68999999999999999999876
Q ss_pred -----------hhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCC----
Q psy15672 131 -----------EDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMN---- 195 (271)
Q Consensus 131 -----------~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~---- 195 (271)
..+++++++||++||++||||+..|+.|+|+++|||||+||++|++. ..+.+++++||.+||..
T Consensus 179 ~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~ 257 (390)
T 3dra_B 179 NNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPEN 257 (390)
T ss_dssp ----------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTT
T ss_pred ccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCcccccc
Confidence 56789999999999999999999999999999999999999999997 47899999999999983
Q ss_pred -----------------------CcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHh
Q psy15672 196 -----------------------FEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILI 252 (271)
Q Consensus 196 -----------------------~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~ 252 (271)
.+|||+|||||.+|+|||||++++|.+|+... ..++|.+++++||+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~----------~~l~d~~~l~~yiL~ 327 (390)
T 3dra_B 258 LYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNF----------IKLVDLNKAEDYLLN 327 (390)
T ss_dssp TCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGG----------GGGSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhcccc----------ccccCHHHHHHHHHH
Confidence 26999999999999999999999999999521 126999999999997
Q ss_pred hhCCC-CCCcCCCCCCCCCC
Q psy15672 253 CCQHF-NGGLLDKPENMVAS 271 (271)
Q Consensus 253 ~~Q~~-~GGf~~~p~~~~d~ 271 (271)
|||++ .|||+|+|++++|+
T Consensus 328 c~Q~~~~GGf~d~Pg~~pD~ 347 (390)
T 3dra_B 328 KTQNQLFGGFGRDPDSTPDP 347 (390)
T ss_dssp TTBCTTTCSBCSSTTSCCCH
T ss_pred hccCCCCCCcCCCCCCCCch
Confidence 67887 99999999999995
No 3
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=1.1e-66 Score=481.93 Aligned_cols=271 Identities=61% Similarity=1.129 Sum_probs=248.2
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA 80 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~ 80 (271)
+|..|.+.|.+++|++||+|.+|.+|+..+++..++++++||+++|++||||++.+++++|+..||+||++|.++|..+.
T Consensus 89 ~~gg~~a~D~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~ 168 (437)
T 2h6f_B 89 LTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEA 168 (437)
T ss_dssp ECGGGGGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHH
T ss_pred CCCCcccccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCccc
Confidence 37889999999999999999999999987788889999999999999999999999999999999999999999997422
Q ss_pred CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672 81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH 160 (271)
Q Consensus 81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~ 160 (271)
++.++++++++||+++|++||||...+++++|+++||||+++|.++|..+.+.++++++||++||++||||+.+|+.++|
T Consensus 169 ~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh 248 (437)
T 2h6f_B 169 YDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAH 248 (437)
T ss_dssp HTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCC
T ss_pred ccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCC
Confidence 35689999999999999999999998899999999999999999999887788999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCC-CCCCCcc
Q psy15672 161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGD-TCLDGHW 239 (271)
Q Consensus 161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~-~~~~~~~ 239 (271)
+++|||||++|.++|+.+.++++++++||++||.+.+|||+|||||.+|+|||||++++|.+|+......++ .+....|
T Consensus 249 ~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~ 328 (437)
T 2h6f_B 249 GGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHW 328 (437)
T ss_dssp HHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCC
T ss_pred ccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccc
Confidence 999999999999999988889999999999999955899999999999999999999999999987433222 1112246
Q ss_pred ccCHHHHHHHHHhhhCCCCCCcCCCCCCCCCC
Q psy15672 240 LFHHRALQEYILICCQHFNGGLLDKPENMVAS 271 (271)
Q Consensus 240 ~~~~~~l~~~il~~~Q~~~GGf~~~p~~~~d~ 271 (271)
++|+++|++||+.|||+++|||+|+|++++|+
T Consensus 329 l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~ 360 (437)
T 2h6f_B 329 MFHQQALQEYILMCCQCPAGGLLDKPGKSRDF 360 (437)
T ss_dssp SSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred cCCHHHHHHHHHHHccCCCCCccCCCCCCCCH
Confidence 79999999999988999999999999999994
No 4
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=9.9e-67 Score=474.07 Aligned_cols=252 Identities=31% Similarity=0.591 Sum_probs=232.5
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---------CCCCCCCCCCC-------------
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQS---------PNGGFGGGPGQ------------- 58 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~---------~dGGF~~~~~~------------- 58 (271)
||..|+++|++|+|++||+|++|++|+. .+..+++++++||+++|+ ++|||++++..
T Consensus 36 lp~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~ 114 (377)
T 1n4q_B 36 LPERYSSLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTA 114 (377)
T ss_dssp ECGGGGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCC
T ss_pred CCccccccccchHHHHHHHHHHHHHhCC-CCccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhcccccc
Confidence 6899999999999999999999999996 234458999999999999 68999987653
Q ss_pred ----CCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecc-cCCCCChhHHHHHHHHHHHhCcCChhh
Q psy15672 59 ----DPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVH-DGGEVDIRGVYCALCVALLTQVYSEDL 133 (271)
Q Consensus 59 ----~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~-~~~e~d~~~ty~a~~~l~ll~~~~~~~ 133 (271)
.+|+.+||+||++|.++|.. ++.++++++++||+++|++||||... .+++.|+|+||||++++.++|..+.++
T Consensus 115 ~~~d~~~v~~T~~Al~~L~~lg~~--~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~ 192 (377)
T 1n4q_B 115 HPYDSGHIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMD 192 (377)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTCC--STTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSC
T ss_pred ccCCCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHH
Confidence 48999999999999999964 56889999999999999999999986 689999999999999999999877789
Q ss_pred HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCcc----CHHHHHHHHHhccCCCcCCcCCCCCCCCC
Q psy15672 134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLC----DIKALLRWTTNRQMNFEGGFQGRTNKLVD 209 (271)
Q Consensus 134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~----~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D 209 (271)
++++++||++||++||||+..|+.|+|+++||||+++|.++++.+.. +++++++||.+|| +|||+|||||.+|
T Consensus 193 v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ---~gGf~GR~nK~~D 269 (377)
T 1n4q_B 193 MKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ---QNGYHGRPNKPVD 269 (377)
T ss_dssp HHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB---SSSBCSSTTSCCC
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC---CCCcCCCCCcchh
Confidence 99999999999999999999999999999999999999999986543 7899999999999 6999999999999
Q ss_pred chhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCC-CCCcCCCCCCCCCC
Q psy15672 210 GCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHF-NGGLLDKPENMVAS 271 (271)
Q Consensus 210 ~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~-~GGf~~~p~~~~d~ 271 (271)
+|||||++++|.+|+.. .++|.+++++||+ .||++ +|||+|+|++++|+
T Consensus 270 ~CYSfWv~~~l~iL~~~------------~~~d~~~l~~fil-~cQ~~~~GGf~~~p~~~~D~ 319 (377)
T 1n4q_B 270 TCYSFWVGATLKLLKIF------------QYTNFEKNRNYIL-STQDRLVGGFAKWPDSHPDA 319 (377)
T ss_dssp TTHHHHHHHHHHHTTCG------------GGSCHHHHHHHHH-TTBCTTTCSBCSSTTSCCBH
T ss_pred HHHHHHHHHHHHHhCCc------------cccCHHHHHHHHH-HHcCCCCCCcCCCCCCCCCH
Confidence 99999999999999875 2589999999999 59999 99999999999984
No 5
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=4.2e-66 Score=464.08 Aligned_cols=253 Identities=30% Similarity=0.540 Sum_probs=239.3
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA 80 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~ 80 (271)
+|..|...|.+|+|++||+|++|.+|+. .+..+++++++||++||++||||++.+++++|+.+||+|+++|.+++.
T Consensus 35 ~~~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~--- 110 (331)
T 3dss_B 35 DDYEYCMSEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS--- 110 (331)
T ss_dssp CGGGSGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTC---
T ss_pred CCccceeccccHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCC---
Confidence 5788999999999999999999999996 466789999999999999999999999999999999999999999975
Q ss_pred CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCc
Q psy15672 81 YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAH 160 (271)
Q Consensus 81 ~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~ 160 (271)
++.+|++++++||.++|++||||...+++|+|+++||||+++|.++|..+.++++++++||++||++||||+.+|+.|+|
T Consensus 111 ~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh 190 (331)
T 3dss_B 111 IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESH 190 (331)
T ss_dssp GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCC
T ss_pred ccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCc
Confidence 46789999999999999999999998899999999999999999999887788999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccc
Q psy15672 161 GGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWL 240 (271)
Q Consensus 161 ~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~ 240 (271)
+++||||+++|.++|+.+.++++++++||.+||.+ +|||+|||+|.+|+|||||++++|.+|+.. + .
T Consensus 191 ~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~-dGGf~gr~~k~~D~cys~w~l~~L~llg~~-----------~-~ 257 (331)
T 3dss_B 191 AGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLP-SGGLNGRPEKLPDVCYSWWVLASLKIIGRL-----------H-W 257 (331)
T ss_dssp HHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCT-TSCBCSSTTCCCCHHHHHHHHHHHHHTTCG-----------G-G
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCC-CCCcCCCCCCCCcchhHHHHHHHHHHcCCc-----------c-h
Confidence 99999999999999998888999999999999998 899999999999999999999999999865 1 4
Q ss_pred cCHHHHHHHHHhhhCCCC-CCcCCCCCCCCCC
Q psy15672 241 FHHRALQEYILICCQHFN-GGLLDKPENMVAS 271 (271)
Q Consensus 241 ~~~~~l~~~il~~~Q~~~-GGf~~~p~~~~d~ 271 (271)
+|.+++++||+ +||+++ |||+++||++||+
T Consensus 258 ~~~~~~~~fil-~cQ~~~~GGf~~~pg~~~d~ 288 (331)
T 3dss_B 258 IDREKLRSFIL-ACQDEETGGFADRPGDMVDP 288 (331)
T ss_dssp SCHHHHHHHHH-HTBCTTTCCBCSSTTSCCBH
T ss_pred hhHHHHHHHHH-HhcCCCCCCcCCCCCCCCCH
Confidence 89999999999 599986 9999999999984
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1.6e-46 Score=336.93 Aligned_cols=214 Identities=22% Similarity=0.306 Sum_probs=201.6
Q ss_pred ccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHH
Q psy15672 9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPK 88 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~ 88 (271)
..+|+..||.+|.+|.+++. +++.+++++++||.++|++||||++.++.++|++.||+|+.+|.++|.. +.+++++
T Consensus 91 ~~~~l~~Ty~Al~~L~~l~~-~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~---~~~~~~k 166 (331)
T 3dss_B 91 HDPHLLYTLSAVQILTLYDS-IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKL---DAINVEK 166 (331)
T ss_dssp SCBCHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCG---GGSCHHH
T ss_pred CCccHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCC---CHHHHHH
Confidence 35789999999999999985 5667899999999999999999999888899999999999999999973 5678999
Q ss_pred HHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhh
Q psy15672 89 LKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGF 168 (271)
Q Consensus 89 ~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al 168 (271)
+++||.++|++||||+..++.|+|..+||||+++|.+++..+..+++++++||.++|++||||+++|++++|++||||++
T Consensus 167 ~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l 246 (331)
T 3dss_B 167 AIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVL 246 (331)
T ss_dssp HHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHH
T ss_pred HHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHH
Confidence 99999999999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred hHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672 169 AALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 169 ~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~ 226 (271)
++|.++|+.+.++++++++||+.||++..|||+.+|++.+|.+||||++++|.+++..
T Consensus 247 ~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~ 304 (331)
T 3dss_B 247 ASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEE 304 (331)
T ss_dssp HHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred HHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999988889999999999999974599999999999999999999999999863
No 7
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=8.1e-45 Score=330.11 Aligned_cols=214 Identities=21% Similarity=0.285 Sum_probs=200.3
Q ss_pred CccChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCC-CCCCCchHHHHHHHHHHHHhCCCCcCCcCCh
Q psy15672 8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGG-PGQDPHIAATYAAVNCLIILGTPEAYNCINR 86 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~-~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~ 86 (271)
.|.+++..||.+|.+|.+|+...+..+++++++||+++|++||+|.+. .+.+.+++.||+|+.+|.++|. ...+++
T Consensus 117 ~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~---~~~~~v 193 (377)
T 1n4q_B 117 YDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNN---WSGMDM 193 (377)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTC---GGGSCH
T ss_pred CCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcC---CChHHH
Confidence 467999999999999999998777788999999999999999999986 6789999999999999999997 356789
Q ss_pred HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChh----hHHHHHHHHHHcccCCCCCCCCCCCCCchh
Q psy15672 87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSED----LFNNTREWLTACQTYEGGFSGYPGFEAHGG 162 (271)
Q Consensus 87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~----~~~~~~~~l~~~q~~dGGF~~~p~~es~~~ 162 (271)
+++++||++||++||||+..|+.|+|..+||||+++|.+++..+.. +++++++||.++| +|||++||++.+|+|
T Consensus 194 ~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~C 271 (377)
T 1n4q_B 194 KKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTC 271 (377)
T ss_dssp HHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHH
Confidence 9999999999999999999999999999999999999999865433 7899999999999 899999999999999
Q ss_pred hhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672 163 YTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 163 ~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~ 226 (271)
||||++++|.+|++.+.+|.+++++||+.+|.+..|||+.+|++.+|+.|||+++++|++++..
T Consensus 272 YSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~~ 335 (377)
T 1n4q_B 272 YSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEES 335 (377)
T ss_dssp HHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999988899999999999999876799999999999999999999999999763
No 8
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=2.4e-44 Score=326.57 Aligned_cols=218 Identities=22% Similarity=0.304 Sum_probs=196.7
Q ss_pred CccChHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCC---C-CCCCCCCC-----------CCCCchHHHHHHHHH
Q psy15672 8 LDASRAWICYWICHSLSLLDEP-LSSADKSCVVNFLSQCQS---P-NGGFGGGP-----------GQDPHIAATYAAVNC 71 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~~-~~~~~~~~~i~~l~~~q~---~-dGGF~~~~-----------~~~~~~~~Ty~Av~~ 71 (271)
.+.+|++.||++|.+|.+|+.+ ++..+|+++++||.+||+ + ||||...+ +.+.|++.||+|+.+
T Consensus 89 ~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i 168 (390)
T 3dra_B 89 YDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLI 168 (390)
T ss_dssp TSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHH
Confidence 4789999999999999999986 456789999999999999 7 89999543 578999999999999
Q ss_pred HHHhCCCCc----------CCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHH
Q psy15672 72 LIILGTPEA----------YNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWL 141 (271)
Q Consensus 72 L~~lg~~~~----------~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l 141 (271)
+.+|+.... .+.+|++++++||.+||+.||||+..|+.|+|..+||||+++|.+++.+ ..+++++++||
T Consensus 169 ~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL 247 (390)
T 3dra_B 169 RHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWL 247 (390)
T ss_dssp HHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHH
T ss_pred HHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHH
Confidence 999997531 0158899999999999999999999999999999999999999999977 47889999999
Q ss_pred HHccc----------------------------CCCCCCCCCCCCCchhhhhhhhhHHHhhcc--CCccCHHHHHHHHHh
Q psy15672 142 TACQT----------------------------YEGGFSGYPGFEAHGGYTFCGFAALCLLKS--EHLCDIKALLRWTTN 191 (271)
Q Consensus 142 ~~~q~----------------------------~dGGF~~~p~~es~~~~T~~al~aL~llg~--~~~~~~~~~~~wl~~ 191 (271)
.++|. ++|||++||+|.+|+||+||++++|.+|++ .+.+|.+++.+||+.
T Consensus 248 ~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~ 327 (390)
T 3dra_B 248 IHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLN 327 (390)
T ss_dssp HTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHH
T ss_pred HHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccccccCHHHHHHHHHH
Confidence 99997 479999999999999999999999999995 457899999999999
Q ss_pred ccCC-CcCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672 192 RQMN-FEGGFQGRTNKLVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 192 ~Q~~-~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~ 226 (271)
||+. ..|||+.+|++.+|++|||+++++|+++++.
T Consensus 328 c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~~ 363 (390)
T 3dra_B 328 KTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHE 363 (390)
T ss_dssp TTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCCc
Confidence 8543 3799999999999999999999999999873
No 9
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=8.7e-43 Score=323.55 Aligned_cols=216 Identities=18% Similarity=0.217 Sum_probs=195.4
Q ss_pred CccChHHHHHHHHHHHHHcCCC-----CChhh--HHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc
Q psy15672 8 LDASRAWICYWICHSLSLLDEP-----LSSAD--KSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA 80 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~~-----~~~~~--~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~ 80 (271)
.+.+++..||++|.+|.+|+.. .+..+ ++++++||.++|++||+|.+..+.+.+++.||+|+.+|.+||..
T Consensus 135 ~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~-- 212 (520)
T 3q7a_B 135 SQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII-- 212 (520)
T ss_dssp TSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--
T ss_pred CCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC--
Confidence 5689999999999999999975 33556 89999999999999999999878899999999999999999973
Q ss_pred CCcCChHHHHHHHHhhcCCCCCeec-----------------------ccCCCCChhHHHHHHHHHHHhCcC------Ch
Q psy15672 81 YNCINRPKLKQFLQRLKAPDGGFHV-----------------------HDGGEVDIRGVYCALCVALLTQVY------SE 131 (271)
Q Consensus 81 ~~~~~~~~~~~~l~~~q~~dGgf~~-----------------------~~~~e~d~~~ty~a~~~l~ll~~~------~~ 131 (271)
...+++++++||.+||++||||+. .|+.|+|..+||||+++|.+|+.. ..
T Consensus 213 -~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~ 291 (520)
T 3q7a_B 213 -TPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLS 291 (520)
T ss_dssp -CHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCC
T ss_pred -ChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccc
Confidence 456789999999999999999998 679999999999999999999875 35
Q ss_pred hhHHHHHHHHHHccc---CCCCCCCCCCCCCchhhhhhhhhHHHhhccC-------------------------------
Q psy15672 132 DLFNNTREWLTACQT---YEGGFSGYPGFEAHGGYTFCGFAALCLLKSE------------------------------- 177 (271)
Q Consensus 132 ~~~~~~~~~l~~~q~---~dGGF~~~p~~es~~~~T~~al~aL~llg~~------------------------------- 177 (271)
.+.+++++||..+|. ++|||++||++.+|+||+||++++|.+|++.
T Consensus 292 ~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 371 (520)
T 3q7a_B 292 IDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPI 371 (520)
T ss_dssp CCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------C
T ss_pred cCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhccccccccccccccccccccccccccccc
Confidence 689999999999996 4699999999999999999999999999864
Q ss_pred -CccCHHHHHHHHH-hccCCC--cCCcCCCCCCCCCchhhhhhhhhHHHHHHH
Q psy15672 178 -HLCDIKALLRWTT-NRQMNF--EGGFQGRTNKLVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 178 -~~~~~~~~~~wl~-~~Q~~~--~GGf~gr~~k~~D~cyt~w~~~~L~~l~~~ 226 (271)
..+|.+++.+||+ .+|.+. .|||+++|+|.+|++|||+++++|+++++.
T Consensus 372 ~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~ 424 (520)
T 3q7a_B 372 PPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHK 424 (520)
T ss_dssp CCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSC
T ss_pred ccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC
Confidence 2468999999999 578873 299999999999999999999999999875
No 10
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=1.6e-42 Score=320.55 Aligned_cols=213 Identities=17% Similarity=0.236 Sum_probs=195.7
Q ss_pred ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCCh
Q psy15672 9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINR 86 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~ 86 (271)
+.+++..||.+|.+|.+++.. .+..+++++++||+++|++||||++.++.++|++.||+|+.+|.++|.. ....+
T Consensus 146 ~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~---~~~~v 222 (437)
T 2h6f_B 146 QYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII---TPDLF 222 (437)
T ss_dssp CCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC---CTTTT
T ss_pred CCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCC---ChHHH
Confidence 468999999999999999974 3445789999999999999999999888899999999999999999974 34568
Q ss_pred HHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHccc-CCCCCCCCCCCCCchhhhh
Q psy15672 87 PKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQT-YEGGFSGYPGFEAHGGYTF 165 (271)
Q Consensus 87 ~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~-~dGGF~~~p~~es~~~~T~ 165 (271)
+++++||.++|++||||+..++.++|..+||||+++|.++|..+..+++++++||++||. ++|||++||++.+|+||||
T Consensus 223 ~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSf 302 (437)
T 2h6f_B 223 EGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSF 302 (437)
T ss_dssp TTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHH
T ss_pred HHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHH
Confidence 899999999999999999999999999999999999999998877889999999999998 8899999999999999999
Q ss_pred hhhhHHHhhccC-------------CccCHHHHHHHHHh-ccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHHH
Q psy15672 166 CGFAALCLLKSE-------------HLCDIKALLRWTTN-RQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYR 225 (271)
Q Consensus 166 ~al~aL~llg~~-------------~~~~~~~~~~wl~~-~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~~ 225 (271)
|++++|.+|++. ..+|.+++.+||+. +|.+ +|||+.+|++.+|..|||+++++|+++++
T Consensus 303 w~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~-~GGf~d~Pg~~~D~yHT~y~L~gLsl~~~ 375 (437)
T 2h6f_B 303 WQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCP-AGGLLDKPGKSRDFYHTCYCLSGLSIAQH 375 (437)
T ss_dssp HTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCT-TSCBCSSTTSCCCHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCC-CCCccCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 999999999863 14789999999998 5665 89999999999999999999999999986
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.91 E-value=6.3e-23 Score=198.67 Aligned_cols=242 Identities=17% Similarity=0.085 Sum_probs=182.5
Q ss_pred cChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCC-------------CCCCCC--CCCCCchHHHHHHHHHHHH
Q psy15672 10 ASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPN-------------GGFGGG--PGQDPHIAATYAAVNCLII 74 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~d-------------GGF~~~--~~~~~~~~~Ty~Av~~L~~ 74 (271)
.+.+|-+.|++.+|..+|...+...++++++||.++|..+ |||+.. +...+++..|..++.+|..
T Consensus 308 ~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~ 387 (631)
T 2sqc_A 308 ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNT 387 (631)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHH
Confidence 4679999999999999998654567899999999998753 444432 2345889999999999999
Q ss_pred hCCCCc-CCcCChHHHHHHHHhhcCCCCCeecccC-------------------CCCChhHHHHHHHHHHHhCcCC-hhh
Q psy15672 75 LGTPEA-YNCINRPKLKQFLQRLKAPDGGFHVHDG-------------------GEVDIRGVYCALCVALLTQVYS-EDL 133 (271)
Q Consensus 75 lg~~~~-~~~~~~~~~~~~l~~~q~~dGgf~~~~~-------------------~e~d~~~ty~a~~~l~ll~~~~-~~~ 133 (271)
++.... ......+++++||.++|++||||..... ..+++..|..++.+|..++... .+.
T Consensus 388 ~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~ 467 (631)
T 2sqc_A 388 LRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKV 467 (631)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHH
T ss_pred cCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHH
Confidence 886310 0112367899999999999999964311 0145667778888888777532 467
Q ss_pred HHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC-ccCHHHHHHHHHhccCCCcCCcCCCC--------
Q psy15672 134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH-LCDIKALLRWTTNRQMNFEGGFQGRT-------- 204 (271)
Q Consensus 134 ~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~-~~~~~~~~~wl~~~Q~~~~GGf~gr~-------- 204 (271)
++++++||+++|++||||.++.+. .+...|..++.+|..+|... ...++++++||+++|.+ +|||...+
T Consensus 468 i~rai~~L~~~Q~~DGsw~g~wg~-~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~-DGgWg~~~~sy~~~~~ 545 (631)
T 2sqc_A 468 IRRAVEYLKREQKPDGSWFGRWGV-NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNP-DGGWGEDCRSYEDPAY 545 (631)
T ss_dssp HHHHHHHHHHHCCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCT-TSCCCCCGGGGTCGGG
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCC-CchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcC-CCCcCCcccccccccc
Confidence 899999999999999999665542 34445677788888887642 34678999999999998 89996532
Q ss_pred --CCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCCCCC
Q psy15672 205 --NKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPE 266 (271)
Q Consensus 205 --~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~p~ 266 (271)
...+|+..|+|++.+|..++... ....++..+||+ .+|+++|||...+.
T Consensus 546 ~~~~~s~v~~Ta~ALlaL~~ag~~~------------~~~i~rav~wL~-~~Q~~dGgw~~~~~ 596 (631)
T 2sqc_A 546 AGKGASTPSQTAWALMALIAGGRAE------------SEAARRGVQYLV-ETQRPDGGWDEPYY 596 (631)
T ss_dssp TTCSSCCHHHHHHHHHHHHHTTCSS------------SHHHHHHHHHHH-HHCCTTSCCCCCSC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCC------------hHHHHHHHHHHH-hccCCCCCcCCCCc
Confidence 34678999999999998876430 134588899998 59999999987654
No 12
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.90 E-value=9.2e-23 Score=197.51 Aligned_cols=198 Identities=16% Similarity=0.186 Sum_probs=155.2
Q ss_pred cChHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCCCCCCCCCCC-------------------CCCchHHHHH
Q psy15672 10 ASRAWICYWICHSLSLLDEPL---SSADKSCVVNFLSQCQSPNGGFGGGPG-------------------QDPHIAATYA 67 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~~---~~~~~~~~i~~l~~~q~~dGGF~~~~~-------------------~~~~~~~Ty~ 67 (271)
.+.+|.|.+++.+|..++... .+...+++++||+++|++||||+..+. ..+++..|..
T Consensus 372 ~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~ 451 (631)
T 2sqc_A 372 YPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAH 451 (631)
T ss_dssp CCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHH
Confidence 467999999999999998732 234577899999999999999975321 1277889999
Q ss_pred HHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHH---HHHHHHhCcC-ChhhHHHHHHHHHH
Q psy15672 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA---LCVALLTQVY-SEDLFNNTREWLTA 143 (271)
Q Consensus 68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a---~~~l~ll~~~-~~~~~~~~~~~l~~ 143 (271)
++.+|..++... ....++++++||.++|++||||.... ++.++|+. +.+|..++.. ..+.++++++||++
T Consensus 452 vl~aL~~~g~~~--~~~~i~rai~~L~~~Q~~DGsw~g~w----g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s 525 (631)
T 2sqc_A 452 VLECFGSFGYDD--AWKVIRRAVEYLKREQKPDGSWFGRW----GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQ 525 (631)
T ss_dssp HHHHHHTTTCCT--TSHHHHHHHHHHHHHCCTTSCCCCSS----BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCc--cHHHHHHHHHHHHHhcCCCCCCCCCC----CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 999999998631 23457899999999999999995432 23455554 4445555532 24678999999999
Q ss_pred cccCCCCCCCCC----------CCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC---CCCc
Q psy15672 144 CQTYEGGFSGYP----------GFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK---LVDG 210 (271)
Q Consensus 144 ~q~~dGGF~~~p----------~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k---~~D~ 210 (271)
+|++||||+..+ ..++|+..|+|||.+|..+|..+...++++++||+++|++ +|||...... .+..
T Consensus 526 ~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~-dGgw~~~~~tg~gf~~~ 604 (631)
T 2sqc_A 526 HQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP-DGGWDEPYYTGTGFPGD 604 (631)
T ss_dssp TCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCT-TSCCCCCSCCEEEETTT
T ss_pred hCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCC-CCCcCCCCccccccccc
Confidence 999999998643 4578999999999999999987555688999999999998 8999987654 5667
Q ss_pred hhhh
Q psy15672 211 CYSF 214 (271)
Q Consensus 211 cyt~ 214 (271)
||--
T Consensus 605 ~yl~ 608 (631)
T 2sqc_A 605 FYLG 608 (631)
T ss_dssp EEEE
T ss_pred ceee
Confidence 7653
No 13
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.90 E-value=1.2e-22 Score=199.10 Aligned_cols=241 Identities=16% Similarity=0.160 Sum_probs=179.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCCC--------------CCCCCCCC--CCCchHHHHHHHHH
Q psy15672 11 SRAWICYWICHSLSLLDEPLS---SADKSCVVNFLSQCQSPN--------------GGFGGGPG--QDPHIAATYAAVNC 71 (271)
Q Consensus 11 ~~~~~~y~~l~~L~lL~~~~~---~~~~~~~i~~l~~~q~~d--------------GGF~~~~~--~~~~~~~Ty~Av~~ 71 (271)
+.+|-+-|++.+|.-.+..-+ ....+++++||+++|..+ |||+.... ..+++..|..++.+
T Consensus 384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~a 463 (732)
T 1w6k_A 384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKA 463 (732)
T ss_dssp CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHH
Confidence 778999999999998875321 235788999999999866 88876542 45799999999999
Q ss_pred HHHhCCCC-----cCCcCChHHHHHHHHhhcCCCCCeecccC----------------CC-----CChhHHHHHHHHHHH
Q psy15672 72 LIILGTPE-----AYNCINRPKLKQFLQRLKAPDGGFHVHDG----------------GE-----VDIRGVYCALCVALL 125 (271)
Q Consensus 72 L~~lg~~~-----~~~~~~~~~~~~~l~~~q~~dGgf~~~~~----------------~e-----~d~~~ty~a~~~l~l 125 (271)
|..++... .......+++++||.++|++||||..... +. +.+..|..++.+|..
T Consensus 464 L~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~ 543 (732)
T 1w6k_A 464 VLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKY 543 (732)
T ss_dssp HHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHH
Confidence 98874310 01112357899999999999999963211 11 234456667777777
Q ss_pred hCcC--------ChhhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc-----cCHHHHHHHHHhc
Q psy15672 126 TQVY--------SEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL-----CDIKALLRWTTNR 192 (271)
Q Consensus 126 l~~~--------~~~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~-----~~~~~~~~wl~~~ 192 (271)
++.. ....++++++||+++|++||||.++.+. .+...|++++.+|..+|.... ..++++++||+++
T Consensus 544 ~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~ 622 (732)
T 1w6k_A 544 FHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSR 622 (732)
T ss_dssp HHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTT
T ss_pred hccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCC-ccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHh
Confidence 6531 1346889999999999999999876553 445568999999999998532 3578999999999
Q ss_pred cCCCcCCcCCC----------CCCCCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672 193 QMNFEGGFQGR----------TNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL 262 (271)
Q Consensus 193 Q~~~~GGf~gr----------~~k~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~ 262 (271)
|.+ +|||... +++.+|++.|.|++.+|..++.. + ....++..+||+ .+|+++|||.
T Consensus 623 Q~~-DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~-----------~-~~~i~r~v~wL~-~~Q~~~Ggf~ 688 (732)
T 1w6k_A 623 QMA-DGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP-----------D-IEAQERGVRCLL-EKQLPNGDWP 688 (732)
T ss_dssp CCT-TSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS-----------C-HHHHHHHHHHHH-HHCCTTSCCC
T ss_pred ccc-CCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCC-----------C-hHHHHHHHHHHH-HhcCCCCCcc
Confidence 998 8999864 35568999999999888766432 0 134577899998 5999999999
Q ss_pred CCCC
Q psy15672 263 DKPE 266 (271)
Q Consensus 263 ~~p~ 266 (271)
..+.
T Consensus 689 ~~~~ 692 (732)
T 1w6k_A 689 QENI 692 (732)
T ss_dssp CCSC
T ss_pred CCcc
Confidence 6553
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.87 E-value=2.3e-21 Score=190.07 Aligned_cols=201 Identities=14% Similarity=0.124 Sum_probs=158.1
Q ss_pred cChHHHHHHHHHHHHHcCC-------CCChhhHHHHHHHHHhcCCCCCCCCCCCC---------------------CCCc
Q psy15672 10 ASRAWICYWICHSLSLLDE-------PLSSADKSCVVNFLSQCQSPNGGFGGGPG---------------------QDPH 61 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~-------~~~~~~~~~~i~~l~~~q~~dGGF~~~~~---------------------~~~~ 61 (271)
.+.+..|-++|.+|..+.. ..++...+++++||+++|++||||+.... ..++
T Consensus 451 ~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~ 530 (732)
T 1w6k_A 451 WIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTY 530 (732)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCB
T ss_pred CCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCc
Confidence 4688999999999998742 34556788999999999999999964221 2346
Q ss_pred hHHHHHHHHHHHHhCCC-CcC----CcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCCh-----
Q psy15672 62 IAATYAAVNCLIILGTP-EAY----NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSE----- 131 (271)
Q Consensus 62 ~~~Ty~Av~~L~~lg~~-~~~----~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~----- 131 (271)
+..|.+++.+|..++.. ... ....++++++||.++|++||+|... .+..++..|++++.+|.++|....
T Consensus 531 v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~-wg~~~~Y~T~~al~AL~~aG~~~~~~~~~ 609 (732)
T 1w6k_A 531 VECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQTYRDGTAC 609 (732)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCS-SBSSHHHHHHHHHHHHHHTTCCCBTTBCC
T ss_pred chHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCc-CCCccchHHHHHHHHHHHhCCcccccchh
Confidence 78999999999888631 000 0234788999999999999999764 345566778889999999886432
Q ss_pred hhHHHHHHHHHHcccCCCCCCCC----------CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcC
Q psy15672 132 DLFNNTREWLTACQTYEGGFSGY----------PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQ 201 (271)
Q Consensus 132 ~~~~~~~~~l~~~q~~dGGF~~~----------p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~ 201 (271)
+.++++++||+++|++||||+.. ++.++++..|.||+.+|..++..+...++++++||+++|++ +|||.
T Consensus 610 ~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~-~Ggf~ 688 (732)
T 1w6k_A 610 AEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLP-NGDWP 688 (732)
T ss_dssp HHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCT-TSCCC
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCC-CCCcc
Confidence 57899999999999999999864 35678999999999999998876555688999999999998 89999
Q ss_pred CCCC--CCCCchh
Q psy15672 202 GRTN--KLVDGCY 212 (271)
Q Consensus 202 gr~~--k~~D~cy 212 (271)
..+. .++..||
T Consensus 689 ~~~~~g~f~~~~~ 701 (732)
T 1w6k_A 689 QENIAGVFNKSCA 701 (732)
T ss_dssp CCSCCEEETTTEE
T ss_pred CCcccccccchhh
Confidence 7653 3456665
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.68 E-value=2.3e-15 Score=131.58 Aligned_cols=189 Identities=17% Similarity=0.130 Sum_probs=127.6
Q ss_pred ChHHHHHHHHHHHHHcCCC--CChhh-------HHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcC
Q psy15672 11 SRAWICYWICHSLSLLDEP--LSSAD-------KSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAY 81 (271)
Q Consensus 11 ~~~~~~y~~l~~L~lL~~~--~~~~~-------~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~ 81 (271)
++++...+++.-|...+.. ++++. .++.+++++++|++||||+..++.+++...|.+++.+|..+......
T Consensus 7 ~~~~P~~~~~~yL~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v 86 (277)
T 1qqf_A 7 IGMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAI 86 (277)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHCGGGHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHcCCcccCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCC
Confidence 4455566666655555531 11222 34456669999999999999888889999999999999998753111
Q ss_pred CcCChHHHHHHHHh-hcCCCCCeecccC-------C------CCChhHHHHHHHHHHHhC------cC-ChhhHHHHHHH
Q psy15672 82 NCINRPKLKQFLQR-LKAPDGGFHVHDG-------G------EVDIRGVYCALCVALLTQ------VY-SEDLFNNTREW 140 (271)
Q Consensus 82 ~~~~~~~~~~~l~~-~q~~dGgf~~~~~-------~------e~d~~~ty~a~~~l~ll~------~~-~~~~~~~~~~~ 140 (271)
+....+++++||.+ .|++||+|..... + +++...|..++.+|...+ .. ..+.++++++|
T Consensus 87 ~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~ 166 (277)
T 1qqf_A 87 DSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEY 166 (277)
T ss_dssp CHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHH
Confidence 11124689999995 9999999975421 0 112333444444444332 11 13567899999
Q ss_pred HHHcccC---------------------------------CCCCCCCCCCC-CchhhhhhhhhHHHhhccCCccCHHHHH
Q psy15672 141 LTACQTY---------------------------------EGGFSGYPGFE-AHGGYTFCGFAALCLLKSEHLCDIKALL 186 (271)
Q Consensus 141 l~~~q~~---------------------------------dGGF~~~p~~e-s~~~~T~~al~aL~llg~~~~~~~~~~~ 186 (271)
|.++++. +|++-..++.. .++..|.||+.+|...+.. ..+++++
T Consensus 167 L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~~~~~~v 244 (277)
T 1qqf_A 167 LEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF--DSVPPVV 244 (277)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT--TSHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh--hhHHHHH
Confidence 9998764 44454444422 2556788999888887653 5789999
Q ss_pred HHHHhccCCCcCCcCC
Q psy15672 187 RWTTNRQMNFEGGFQG 202 (271)
Q Consensus 187 ~wl~~~Q~~~~GGf~g 202 (271)
+||.++|++ +|||..
T Consensus 245 ~wL~~qq~~-~Ggw~s 259 (277)
T 1qqf_A 245 RWLNDERYY-GGGYGS 259 (277)
T ss_dssp HHHHHCCCC-TTSTTC
T ss_pred HHHHHccCC-CCCeec
Confidence 999999997 799987
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.67 E-value=1.7e-15 Score=134.62 Aligned_cols=199 Identities=15% Similarity=0.069 Sum_probs=134.9
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCC--CCh-------hhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHH
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEP--LSS-------ADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNC 71 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~-------~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~ 71 (271)
+|.-.--|..++++...+++.-|...+.. +++ ...++.+++++++|++||||+..++.+++.+.|.+++.+
T Consensus 13 ~P~GC~EQ~~~~~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~ 92 (310)
T 2wy7_A 13 TPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKV 92 (310)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHH
Confidence 35555556666777777777666666531 111 134456667999999999999888888999999999999
Q ss_pred HHHhCCCCcCCcCChHHHHHHHHh-hcCCCCCeecccC-------CCC----ChhHHHH--HHHHHHHhC------cC-C
Q psy15672 72 LIILGTPEAYNCINRPKLKQFLQR-LKAPDGGFHVHDG-------GEV----DIRGVYC--ALCVALLTQ------VY-S 130 (271)
Q Consensus 72 L~~lg~~~~~~~~~~~~~~~~l~~-~q~~dGgf~~~~~-------~e~----d~~~ty~--a~~~l~ll~------~~-~ 130 (271)
|..+......+....+++++||.+ .|++||+|..... ++. +...+++ ++.+|...+ .. .
T Consensus 93 l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~ 172 (310)
T 2wy7_A 93 FSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSL 172 (310)
T ss_dssp HHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcch
Confidence 999875311111124689999996 9999999975421 000 2334444 444444332 11 1
Q ss_pred hhhHHHHHHHHHHcccC---------------------------------CCCCCCCCCCC-CchhhhhhhhhHHHhhcc
Q psy15672 131 EDLFNNTREWLTACQTY---------------------------------EGGFSGYPGFE-AHGGYTFCGFAALCLLKS 176 (271)
Q Consensus 131 ~~~~~~~~~~l~~~q~~---------------------------------dGGF~~~p~~e-s~~~~T~~al~aL~llg~ 176 (271)
.+.++++++||.++|+. +|++-..++.. .++..|.||+.+|...+.
T Consensus 173 ~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~ 252 (310)
T 2wy7_A 173 PGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD 252 (310)
T ss_dssp HHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC
Confidence 35678999999998763 34443344321 155678899999888875
Q ss_pred CCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672 177 EHLCDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 177 ~~~~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
. ..++++++||.++|++ +|||..
T Consensus 253 ~--~~~~~~v~wL~~qq~~-~Ggw~s 275 (310)
T 2wy7_A 253 F--DFVPPVVRWLNEQRYY-GGGYGS 275 (310)
T ss_dssp T--TTHHHHHHHHHHTTCC-CCSTTC
T ss_pred h--hhHHHHHHHHHHccCC-CCCeec
Confidence 3 5789999999999987 799976
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.46 E-value=4.8e-13 Score=121.42 Aligned_cols=199 Identities=12% Similarity=0.019 Sum_probs=128.1
Q ss_pred CCCCccCccChHHHHHHHHHHHHHcCCC--CC-------hhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672 2 SRVGNCLDASRAWICYWICHSLSLLDEP--LS-------SADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL 72 (271)
Q Consensus 2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~-------~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L 72 (271)
|.-+.-+-.++.....+++..|.-.+.- ++ ....++.+++|++.|++||||+...+..++.+.|.+++.+|
T Consensus 51 P~Gc~EQ~~s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l 130 (367)
T 1hzf_A 51 PRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVL 130 (367)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHH
Confidence 3333334445555555666666553320 11 12356788999999999999998777678889999999999
Q ss_pred HHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccC------------CCCChhHHHHHHHHHHHhCcC-----------
Q psy15672 73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDG------------GEVDIRGVYCALCVALLTQVY----------- 129 (271)
Q Consensus 73 ~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~------------~e~d~~~ty~a~~~l~ll~~~----------- 129 (271)
..++..-..+....+++++||.+.|++||+|..... .++++..|..++.+|...+..
T Consensus 131 ~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~ 210 (367)
T 1hzf_A 131 SLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQ 210 (367)
T ss_dssp HHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhh
Confidence 888742101112367899999999999999976411 123355555666666544421
Q ss_pred -ChhhHHHHHHHHHHc--cc------------------------------------CCCC---CCCCC------------
Q psy15672 130 -SEDLFNNTREWLTAC--QT------------------------------------YEGG---FSGYP------------ 155 (271)
Q Consensus 130 -~~~~~~~~~~~l~~~--q~------------------------------------~dGG---F~~~p------------ 155 (271)
....++++++||.++ ++ .+|+ |+...
T Consensus 211 ~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~ 290 (367)
T 1hzf_A 211 RVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPA 290 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC---------------
T ss_pred hhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCccccccccccc
Confidence 123577899999776 21 1444 43211
Q ss_pred ---------CCCC-chhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672 156 ---------GFEA-HGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 156 ---------~~es-~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
...+ ++..|.|||.+|...+.. .....+.++||.+.|+. +|||..
T Consensus 291 ~~~~~~~~~~~~s~~vE~TAyaLLall~~~~~-~~~~~~iv~WL~~qrn~-~Ggw~s 345 (367)
T 1hzf_A 291 PRNPSDPMPQAPALWIETTAYALLHLLLHEGK-AEMADQASAWLTRQGSF-QGGFRS 345 (367)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTS-TTCSCS
T ss_pred ccccccccCCCccchhHHHHHHHHHHHhccCc-hhhhHHHHHHHHhCcCC-CCCccc
Confidence 0112 567889999998766532 34578999999998887 799976
No 18
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.41 E-value=1.6e-12 Score=113.53 Aligned_cols=163 Identities=13% Similarity=0.034 Sum_probs=112.5
Q ss_pred hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCc---CChhhHHHHHHHHHH-cccCCCCCCCCCCC----
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQV---YSEDLFNNTREWLTA-CQTYEGGFSGYPGF---- 157 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~---~~~~~~~~~~~~l~~-~q~~dGGF~~~p~~---- 157 (271)
.++.++++.++|++||||+..++.++++..|-.++.+|..+.. .+...++++++||.+ .|.+||+|.....-
T Consensus 40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~ 119 (277)
T 1qqf_A 40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE 119 (277)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchh
Confidence 3456666999999999999887778888888888888887752 345678899999996 99999999765321
Q ss_pred ---------CCchhhhhhhhhHHHhhccC------C-ccCHHHHHHHHHhccCCC-------------------------
Q psy15672 158 ---------EAHGGYTFCGFAALCLLKSE------H-LCDIKALLRWTTNRQMNF------------------------- 196 (271)
Q Consensus 158 ---------es~~~~T~~al~aL~llg~~------~-~~~~~~~~~wl~~~Q~~~------------------------- 196 (271)
+++..+|+.++.+|...+.. . ...++++++||.++|.+.
T Consensus 120 ~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~ 199 (277)
T 1qqf_A 120 MIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLT 199 (277)
T ss_dssp GGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred hcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 23355688888888877532 1 235678999999987642
Q ss_pred -------cCCcCCCCCC-CCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCC
Q psy15672 197 -------EGGFQGRTNK-LVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLD 263 (271)
Q Consensus 197 -------~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~ 263 (271)
+|++-.+++. ..++.-|-|++-+|...+. ....+++.+||+ ..|+++|||..
T Consensus 200 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--------------~~~~~~~v~wL~-~qq~~~Ggw~s 259 (277)
T 1qqf_A 200 KFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--------------FDSVPPVVRWLN-DERYYGGGYGS 259 (277)
T ss_dssp HHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--------------TTSHHHHHHHHH-HCCCCTTSTTC
T ss_pred HHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--------------hhhHHHHHHHHH-HccCCCCCeec
Confidence 1222222221 1134444455544443321 246789999998 58999999974
No 19
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.37 E-value=7.9e-12 Score=110.82 Aligned_cols=162 Identities=13% Similarity=0.025 Sum_probs=112.4
Q ss_pred hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCc---CChhhHHHHHHHHHH-cccCCCCCCCCCCC----
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQV---YSEDLFNNTREWLTA-CQTYEGGFSGYPGF---- 157 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~---~~~~~~~~~~~~l~~-~q~~dGGF~~~p~~---- 157 (271)
.++.++++.++|++||||+..++.++++..|-.++.+|..+.. .+...++++++||.+ .|.+||+|.....-
T Consensus 56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~ 135 (310)
T 2wy7_A 56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE 135 (310)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHh
Confidence 3456667999999999999887777888888888888887753 345678899999996 99999999765321
Q ss_pred ---------CCchhhhhhhhhHHHhhccC------C-ccCHHHHHHHHHhccCCC-------------------------
Q psy15672 158 ---------EAHGGYTFCGFAALCLLKSE------H-LCDIKALLRWTTNRQMNF------------------------- 196 (271)
Q Consensus 158 ---------es~~~~T~~al~aL~llg~~------~-~~~~~~~~~wl~~~Q~~~------------------------- 196 (271)
+++..+|++++.+|...+.. . ...++++++||.++|.+.
T Consensus 136 ~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~ 215 (310)
T 2wy7_A 136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN 215 (310)
T ss_dssp GGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 23455688889888877542 1 224678999999987642
Q ss_pred -------cCCcCCCCCC-CCCchhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672 197 -------EGGFQGRTNK-LVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL 262 (271)
Q Consensus 197 -------~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~ 262 (271)
+|++-.+++. ..++.-|-|++-+|...+. ....+++.+||+ ..|+++|||.
T Consensus 216 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--------------~~~~~~~v~wL~-~qq~~~Ggw~ 274 (310)
T 2wy7_A 216 KFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--------------FDFVPPVVRWLN-EQRYYGGGYG 274 (310)
T ss_dssp HHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--------------TTTHHHHHHHHH-HTTCCCCSTT
T ss_pred HHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--------------hhhHHHHHHHHH-HccCCCCCee
Confidence 1222222221 1144445555555544321 246789999998 5899999996
No 20
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=2.1e-10 Score=119.51 Aligned_cols=210 Identities=10% Similarity=0.022 Sum_probs=136.2
Q ss_pred CCCCccCccChHHHHHHHHHHHHHcCCCCChhhHHH-------HHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q psy15672 2 SRVGNCLDASRAWICYWICHSLSLLDEPLSSADKSC-------VVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLII 74 (271)
Q Consensus 2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~~~~-------~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~ 74 (271)
|....-|-.++.+...++..-|.-.+. +++..+++ .+++++++|++||||+..++..++.+.|.+++.+|..
T Consensus 835 PyGC~EQ~~s~~~p~~~~~~yl~~~~~-~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~ 913 (1325)
T 2pn5_A 835 PTGCGEQNMVKFVPNILVLDYLHAIGS-KEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQT 913 (1325)
T ss_dssp CCCSTTGGGGGTHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHH
Confidence 555555666676666666666655554 33333444 4556689999999999998888999999999999998
Q ss_pred hCCCCcCCcCC---hHHHHHHHHhhcCCCCCeecccC-------CCCChhHHHHHHHHHHHhCc--C---ChhhHHHHHH
Q psy15672 75 LGTPEAYNCIN---RPKLKQFLQRLKAPDGGFHVHDG-------GEVDIRGVYCALCVALLTQV--Y---SEDLFNNTRE 139 (271)
Q Consensus 75 lg~~~~~~~~~---~~~~~~~l~~~q~~dGgf~~~~~-------~e~d~~~ty~a~~~l~ll~~--~---~~~~~~~~~~ 139 (271)
+.... ..++ .+++++||.+.|++||+|..... ++.+.+.+|++.+..+|+.. . ....++++++
T Consensus 914 a~~~~--~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~ 991 (1325)
T 2pn5_A 914 AVKYI--SDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMT 991 (1325)
T ss_dssp HTTTC--SCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHH
T ss_pred HHhhE--EcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHH
Confidence 86421 1133 56899999999999999965311 22233455555433344332 1 1235778889
Q ss_pred HHHHcccC-CCCCCC-----------CC------------------------CCCCchhhhhhhhhHHHhhccCCccCHH
Q psy15672 140 WLTACQTY-EGGFSG-----------YP------------------------GFEAHGGYTFCGFAALCLLKSEHLCDIK 183 (271)
Q Consensus 140 ~l~~~q~~-dGGF~~-----------~p------------------------~~es~~~~T~~al~aL~llg~~~~~~~~ 183 (271)
||.+++.. +++++. .+ ...+....|.||+.+|...+.. ....
T Consensus 992 ~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~~--~~~~ 1069 (1325)
T 2pn5_A 992 YLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEKY--TDGI 1069 (1325)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTCH--HHHH
T ss_pred HHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhccc--hhhH
Confidence 99988764 454321 00 0123555678888887776643 3467
Q ss_pred HHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHHHH
Q psy15672 184 ALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIY 224 (271)
Q Consensus 184 ~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~l~ 224 (271)
+.++||++.|.. .|||.. +-.|-|++-+|....
T Consensus 1070 ~~v~wL~~q~~~-~g~w~s-------Tq~T~~aL~AL~~y~ 1102 (1325)
T 2pn5_A 1070 PVMNWLVNQRYV-TGSFPS-------TQDTFVGLKALTKMA 1102 (1325)
T ss_dssp HHHHHHHTTCCT-TSSCSS-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCC-CCCccc-------hHHHHHHHHHHHHHH
Confidence 899999988776 688875 334556665555443
No 21
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.17 E-value=2.5e-10 Score=103.46 Aligned_cols=107 Identities=18% Similarity=0.107 Sum_probs=79.7
Q ss_pred hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCc---CChhhHHHHHHHHHHcccCCCCCCCCCCC-----
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQV---YSEDLFNNTREWLTACQTYEGGFSGYPGF----- 157 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~---~~~~~~~~~~~~l~~~q~~dGGF~~~p~~----- 157 (271)
.+++++||.+.|++||||+...+...+...|-.++-.|..++. .+...++++++||+++|.+||+|..+...
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~ 172 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 172 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence 4668899999999999998776666777777777777776652 24567899999999999999999865221
Q ss_pred -------CCchhhhhhhhhHHHhhccCC------------ccCHHHHHHHHHhc
Q psy15672 158 -------EAHGGYTFCGFAALCLLKSEH------------LCDIKALLRWTTNR 192 (271)
Q Consensus 158 -------es~~~~T~~al~aL~llg~~~------------~~~~~~~~~wl~~~ 192 (271)
+++...|.+++.+|...+... ...+++.++||.++
T Consensus 173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 234556889999998776421 11357888999766
No 22
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.13 E-value=1.3e-09 Score=109.68 Aligned_cols=230 Identities=12% Similarity=-0.006 Sum_probs=136.9
Q ss_pred CCCCccCccChHHHHHHHHHHHHHcCCC--CChh-------hHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672 2 SRVGNCLDASRAWICYWICHSLSLLDEP--LSSA-------DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL 72 (271)
Q Consensus 2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~-------~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L 72 (271)
|....-|-.++++...+++.-|...+.. ++.. ..++.+++++..|++||||+..++..++.+.|.+++..|
T Consensus 259 PyGC~EQ~~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l 338 (915)
T 2hr0_B 259 PSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVF 338 (915)
T ss_dssp CCCSTTGGGGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHH
T ss_pred CCCcHHHHHHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHH
Confidence 4444555566766666776666665531 1111 234456678899999999998887788999999999988
Q ss_pred HHhCCCCcCCcCChHHHHHHHHh-hcCCCCCeeccc--------CC-----CCChhHHHHHHHHHHHhCcC-------Ch
Q psy15672 73 IILGTPEAYNCINRPKLKQFLQR-LKAPDGGFHVHD--------GG-----EVDIRGVYCALCVALLTQVY-------SE 131 (271)
Q Consensus 73 ~~lg~~~~~~~~~~~~~~~~l~~-~q~~dGgf~~~~--------~~-----e~d~~~ty~a~~~l~ll~~~-------~~ 131 (271)
..+......+....+++++||.+ .|.+||+|.... ++ +++...|..++.+|...+.. ..
T Consensus 339 ~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~ 418 (915)
T 2hr0_B 339 SLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLP 418 (915)
T ss_dssp HTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHH
T ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccch
Confidence 87764211111125779999995 999999996431 11 12344444555566555432 13
Q ss_pred hhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCC-cCCCCCCCCCc
Q psy15672 132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGG-FQGRTNKLVDG 210 (271)
Q Consensus 132 ~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GG-f~gr~~k~~D~ 210 (271)
..+.++++||.+.+.. . .++......-.+|.+.|.. .+.+++.|..... .|. |.+......|+
T Consensus 419 ~~i~~A~~yL~~~~~~---~-------~~~y~~a~layAL~l~g~~----a~~~l~~L~~~~~--~~~~w~~~~~~~~~v 482 (915)
T 2hr0_B 419 GSITKAGDFLEANYMN---L-------QRSYTVAIAGYALAQMGRL----KGPLLNKFLTTAK--DKNRWEDPGKQLYNV 482 (915)
T ss_dssp HHHHHHHHHHHHHGGG---C-------CSHHHHHHHHHHHHTTTCC----CHHHHHHHHHTSB--TTTBCCCSSCHHHHH
T ss_pred HHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCh----HHHHHHHHHhhcc--CCCCCCCCCCCccch
Confidence 4677899999998753 1 1111112222255566654 3566777766432 233 33211112244
Q ss_pred hhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcC
Q psy15672 211 CYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLL 262 (271)
Q Consensus 211 cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~ 262 (271)
--|-|++-+|...+. .-...++.+||+ ..|+.+|||.
T Consensus 483 e~TayaLlall~~~~--------------~~~~~~~v~wL~-~qq~~~Ggw~ 519 (915)
T 2hr0_B 483 EATSYALLALLQLKD--------------FDFVPPVVRWLN-EQRYYGGGYG 519 (915)
T ss_dssp HHHHHHHHHHHHTTC--------------TTTHHHHHHHHH-TCCCSSSSCC
T ss_pred HHHHHHHHHHHhcCC--------------hhhHHHHHHHHH-hcccCCCCcc
Confidence 455555555544322 124678889998 5788899996
No 23
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.12 E-value=1.1e-09 Score=114.66 Aligned_cols=216 Identities=12% Similarity=0.065 Sum_probs=140.6
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCCCChhh-------HHHHHHHHHhcCCCCCCCCCCCC----CCCchHHHHHHH
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEPLSSAD-------KSCVVNFLSQCQSPNGGFGGGPG----QDPHIAATYAAV 69 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~~~~~~-------~~~~i~~l~~~q~~dGGF~~~~~----~~~~~~~Ty~Av 69 (271)
+|.-..-|--++++...+++.-|...+. ++++. .++.+++++++|++||||+..+. ..++.+.|.+++
T Consensus 945 yPyGC~EQ~ms~~~P~l~~~~yL~~t~q-~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~ 1023 (1451)
T 4acq_A 945 MPYGCGEXNMVLFAPNIYVLDYLNETQQ-LTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVL 1023 (1451)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHH
T ss_pred CCCCchhhhhhhhhhHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHH
Confidence 3555555666666666666666665554 33322 34567899999999999997653 458899999999
Q ss_pred HHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecc--------cCC-CCChhHHHHHHHHHHHhCcC-ChhhHHHHHH
Q psy15672 70 NCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVH--------DGG-EVDIRGVYCALCVALLTQVY-SEDLFNNTRE 139 (271)
Q Consensus 70 ~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~--------~~~-e~d~~~ty~a~~~l~ll~~~-~~~~~~~~~~ 139 (271)
..|......-..+....+++++||.+.|++||+|... .++ +.++..|..++.+|...|.. ....++++++
T Consensus 1024 ~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~ 1103 (1451)
T 4acq_A 1024 KTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALF 1103 (1451)
T ss_dssp HHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHH
T ss_pred HHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 9998887531112223678999999999999999742 122 34566677777777777653 2345777888
Q ss_pred HHHHc------------------------------c------------cCCCC---CCCCC------------C-CCCch
Q psy15672 140 WLTAC------------------------------Q------------TYEGG---FSGYP------------G-FEAHG 161 (271)
Q Consensus 140 ~l~~~------------------------------q------------~~dGG---F~~~p------------~-~es~~ 161 (271)
||.++ + ..+|| |+... . ....+
T Consensus 1104 ~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~v 1183 (1451)
T 4acq_A 1104 CLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEV 1183 (1451)
T ss_dssp HHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGG
T ss_pred HHHHhhhhcccccccCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHH
Confidence 87765 1 12455 32211 1 12356
Q ss_pred hhhhhhhhHHHhhccC----CccCHHHHHHHHHhccCCCcCCcCCCCCCCCCchhhhhhhhhHHH
Q psy15672 162 GYTFCGFAALCLLKSE----HLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPL 222 (271)
Q Consensus 162 ~~T~~al~aL~llg~~----~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k~~D~cyt~w~~~~L~~ 222 (271)
..|.+||.+|..++.. +.....+.++||.+.|+. .|||..-- |+...+.+++-+..
T Consensus 1184 E~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~-~Ggf~STQ----dTv~aL~ALa~Y~~ 1243 (1451)
T 4acq_A 1184 EMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNA-QGGFSSTQ----DTVVALHALSKYGA 1243 (1451)
T ss_dssp THHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCT-TSCCSSHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCC-CCCcccHH----HHHHHHHHHHHHHH
Confidence 6899999998888632 223467899999998887 79998632 44444444444443
No 24
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.70 E-value=7e-07 Score=94.92 Aligned_cols=231 Identities=13% Similarity=0.022 Sum_probs=132.8
Q ss_pred CCCCccCccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHH-------HHhcCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy15672 2 SRVGNCLDASRAWICYWICHSLSLLDEP--LSSADKSCVVNF-------LSQCQSPNGGFGGGPGQDPHIAATYAAVNCL 72 (271)
Q Consensus 2 p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~-------l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L 72 (271)
|....-|-.++.+...+++.-|...+.. +....+++++++ ++..|++||||+..++..++.+.|.+++..|
T Consensus 1006 PyGC~EQ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l 1085 (1661)
T 2b39_A 1006 PSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVF 1085 (1661)
T ss_dssp CCCSTTGGGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred CCCchhhhhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHH
Confidence 4445556667777777777666666541 112334444444 5578999999998877788999999999999
Q ss_pred HHhCCCCcCCcCChHHHHHHHHh-hcCCCCCeeccc--------CC-----CCChhHHHHHHHHHHHhCcC-------Ch
Q psy15672 73 IILGTPEAYNCINRPKLKQFLQR-LKAPDGGFHVHD--------GG-----EVDIRGVYCALCVALLTQVY-------SE 131 (271)
Q Consensus 73 ~~lg~~~~~~~~~~~~~~~~l~~-~q~~dGgf~~~~--------~~-----e~d~~~ty~a~~~l~ll~~~-------~~ 131 (271)
..+...-..+.-..+++++||.+ .|.+||.|.... ++ +++...|..++.+|...+.. ..
T Consensus 1086 ~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~ 1165 (1661)
T 2b39_A 1086 ALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLG 1165 (1661)
T ss_dssp HHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHH
T ss_pred HhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchh
Confidence 88875311111125678999995 999999996421 11 12555555556666554321 12
Q ss_pred hhHHHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCC-cCCCCCCCCCc
Q psy15672 132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGG-FQGRTNKLVDG 210 (271)
Q Consensus 132 ~~~~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GG-f~gr~~k~~D~ 210 (271)
..++++++||.+.... + .+.........+|+++|.. .+++++.|.+... .+. |....+...|+
T Consensus 1166 ~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~----a~~~l~~L~~~~~--~~~~W~~~~~~~~~v 1229 (1661)
T 2b39_A 1166 RSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL----EGDRLTKFLNTAK--EKNRWEEPNQKLYNV 1229 (1661)
T ss_dssp HHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC----CHHHHHHHHHHSB--TTTBCCCSSCHHHHH
T ss_pred HHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc----HHHHHHHHHhhcc--CCCCCCCCCCCcchH
Confidence 3567899999875321 1 1222222333455666654 3566777776543 222 22111111123
Q ss_pred hhhhhhhhhHHHHHHHhhhcCCCCCCCccccCHHHHHHHHHhhhCCCCCCcCC
Q psy15672 211 CYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLD 263 (271)
Q Consensus 211 cyt~w~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~ 263 (271)
--+-|++-++...+. .-....+.+||+. .|+..|||.-
T Consensus 1230 E~tayaLlall~~~~--------------~~~~~~iv~wL~~-qr~~~gg~~S 1267 (1661)
T 2b39_A 1230 EATSYALLALLARKD--------------YDTTPPVVRWLNE-QRYYGGGYGS 1267 (1661)
T ss_dssp HHHHHHHHHHHHHTC--------------TTTSHHHHHHHHH-CCTBTTBBCS
T ss_pred HHHHHHHHHHHhcCC--------------hhhHHHHHHHHHh-cccCCCCccc
Confidence 333233333322211 1234778899984 6777899963
No 25
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.63 E-value=7.9e-08 Score=86.98 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=97.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCC-----C----C-----------------------------CCCchHHHHHHHHHHHHh
Q psy15672 34 DKSCVVNFLSQCQSPNGGFGGG-----P----G-----------------------------QDPHIAATYAAVNCLIIL 75 (271)
Q Consensus 34 ~~~~~i~~l~~~q~~dGGF~~~-----~----~-----------------------------~~~~~~~Ty~Av~~L~~l 75 (271)
+-+++.+.|+..|.++|||.-. + . ...|...|..++.+|..+
T Consensus 82 ~A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv 161 (408)
T 1r76_A 82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV 161 (408)
T ss_dssp HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHH
Confidence 3567899999999999999631 0 0 012345677788877665
Q ss_pred CCC----C-cCCcCChHHHHHHHHhhcCCCCCeecc-cCC-C-------CChhHHHHHHHHHHHhCcC------------
Q psy15672 76 GTP----E-AYNCINRPKLKQFLQRLKAPDGGFHVH-DGG-E-------VDIRGVYCALCVALLTQVY------------ 129 (271)
Q Consensus 76 g~~----~-~~~~~~~~~~~~~l~~~q~~dGgf~~~-~~~-e-------~d~~~ty~a~~~l~ll~~~------------ 129 (271)
... + ..-.-..+++++||.+.|.+||||... +.. . .| -.|--++..|..++..
T Consensus 162 ~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~ 240 (408)
T 1r76_A 162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIR 240 (408)
T ss_dssp HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhh
Confidence 321 0 000112578999999999999999753 211 1 11 1233344444444331
Q ss_pred --ChhhHHHHHHHHHHcccC-CCCCCCC------CC--C-------C--C-chhhhhhhhhHHHhhccCCc---cCHHHH
Q psy15672 130 --SEDLFNNTREWLTACQTY-EGGFSGY------PG--F-------E--A-HGGYTFCGFAALCLLKSEHL---CDIKAL 185 (271)
Q Consensus 130 --~~~~~~~~~~~l~~~q~~-dGGF~~~------p~--~-------e--s-~~~~T~~al~aL~llg~~~~---~~~~~~ 185 (271)
....++++++||++.|.. ||.+- + .+ . | + .+..|.++|..|.-+...+. ..++++
T Consensus 241 ~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~A 319 (408)
T 1r76_A 241 TRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGG 319 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 124678999999999998 88654 2 11 1 0 0 12234444444444443221 137899
Q ss_pred HHHHHhccCCCcCCcC
Q psy15672 186 LRWTTNRQMNFEGGFQ 201 (271)
Q Consensus 186 ~~wl~~~Q~~~~GGf~ 201 (271)
++||.++|.+ +|++.
T Consensus 320 v~WL~s~Q~~-dg~w~ 334 (408)
T 1r76_A 320 VAWLNTSVIR-DRAWV 334 (408)
T ss_dssp HHHHHHSCCC-C----
T ss_pred HHHHHHhhcC-CCcee
Confidence 9999999998 77766
No 26
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.61 E-value=8.2e-07 Score=80.73 Aligned_cols=141 Identities=11% Similarity=-0.025 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCC--cCChHH
Q psy15672 11 SRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYN--CINRPK 88 (271)
Q Consensus 11 ~~~~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~--~~~~~~ 88 (271)
.+....=|+|.+|.+.+.++++. .++.+...|+ +++|... ...++.+|..|+++|.-++...... ....++
T Consensus 134 tn~Yq~sL~vLALC~~g~~v~~~----~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~ 206 (414)
T 2bb6_A 134 TSYYQYSLGILALCVHQKRVHDS----VVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINL 206 (414)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCCccHH----HHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCCcchHHHHHH
Confidence 34456678899999999987543 4444444443 4566522 2357889999999999887531100 011444
Q ss_pred HH----HHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChh---hHHHHHHHHHHcccCCCCCCCCCCCCCch
Q psy15672 89 LK----QFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSED---LFNNTREWLTACQTYEGGFSGYPGFEAHG 161 (271)
Q Consensus 89 ~~----~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~---~~~~~~~~l~~~q~~dGGF~~~p~~es~~ 161 (271)
++ ++|.+.|++||+|+ +..+|-.|+.+|...+..... +..+++++|++ |..||+|. ..
T Consensus 207 al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np 271 (414)
T 2bb6_A 207 ALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NP 271 (414)
T ss_dssp HHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SH
T ss_pred HHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------Ch
Confidence 55 78888899999996 456788888888888765433 67789999999 99999997 34
Q ss_pred hhhhhhhhHHHh
Q psy15672 162 GYTFCGFAALCL 173 (271)
Q Consensus 162 ~~T~~al~aL~l 173 (271)
..|..++-+|.-
T Consensus 272 ~ataQ~lpaL~g 283 (414)
T 2bb6_A 272 LMISQLLPVLNQ 283 (414)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcC
Confidence 567777776553
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.58 E-value=1.7e-07 Score=97.69 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=82.5
Q ss_pred hHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhC---c-CChhhHHHHHHHHHHcccCCCCCCCCCC-----
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ---V-YSEDLFNNTREWLTACQTYEGGFSGYPG----- 156 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~---~-~~~~~~~~~~~~l~~~q~~dGGF~~~p~----- 156 (271)
.+.+++++.++|++||||+..++.+++...|..++.+|..+. . .+...++++++||.+.|.+||.|.....
T Consensus 874 i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~ 953 (1325)
T 2pn5_A 874 LRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKE 953 (1325)
T ss_dssp HHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHH
T ss_pred HHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChh
Confidence 344566779999999999998888889999988888888763 2 3456789999999999999999965421
Q ss_pred ----CCCchhhhhhhhhHHHhhccCC---ccCHHHHHHHHHhccCCCcCC
Q psy15672 157 ----FEAHGGYTFCGFAALCLLKSEH---LCDIKALLRWTTNRQMNFEGG 199 (271)
Q Consensus 157 ----~es~~~~T~~al~aL~llg~~~---~~~~~~~~~wl~~~Q~~~~GG 199 (271)
......+|++++++|.-.|... ...++++++||.++|...+++
T Consensus 954 ~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~ 1003 (1325)
T 2pn5_A 954 MQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNA 1003 (1325)
T ss_dssp HHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCH
T ss_pred hcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCH
Confidence 1123446667777776555331 234678889999887543333
No 28
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.57 E-value=4e-06 Score=82.72 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=76.1
Q ss_pred CCCCCccCccChHHHHHHHHHHHHHcCCC--CChhhHHHH-------HHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHH
Q psy15672 1 MSRVGNCLDASRAWICYWICHSLSLLDEP--LSSADKSCV-------VNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNC 71 (271)
Q Consensus 1 ~p~~~~~~d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~-------i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~ 71 (271)
+|....-|--+++....|++.-|...+.. +.+..++++ +.-+++.|++||||+..++..++.+.|.+++.+
T Consensus 327 ~P~GC~EQ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~ 406 (767)
T 4fxk_B 327 LPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKV 406 (767)
T ss_dssp CCCCSTTGGGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHH
T ss_pred ccccchhhHHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHH
Confidence 45556666677778888888888877652 223333444 444567899999999888888899999999999
Q ss_pred HHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeec
Q psy15672 72 LIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHV 105 (271)
Q Consensus 72 L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~ 105 (271)
|......-.........++.||.+.|.+||.|..
T Consensus 407 l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e 440 (767)
T 4fxk_B 407 LSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD 440 (767)
T ss_dssp HHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred HHHHHhhcCcchHHHHHHHHHHHHhhhhcccchh
Confidence 9888653111112256688999999999999974
No 29
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.52 E-value=1.2e-06 Score=88.14 Aligned_cols=175 Identities=18% Similarity=0.138 Sum_probs=115.1
Q ss_pred ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHh-cCCCCCCCCCCCC--------C-----CCchHHHHHHHHHH
Q psy15672 9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQ-CQSPNGGFGGGPG--------Q-----DPHIAATYAAVNCL 72 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~-~q~~dGGF~~~~~--------~-----~~~~~~Ty~Av~~L 72 (271)
+++..|++-|++..|..+... +++...+++++||.+ .|.+||+|..... . ++++..|.+++.+|
T Consensus 324 ~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL 403 (915)
T 2hr0_B 324 RAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISL 403 (915)
T ss_dssp SCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHH
T ss_pred CCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHH
Confidence 467899999999999988743 566678899999995 9999999965321 1 23566677888888
Q ss_pred HHhCCCC--cCC--cCChHHHHHHHHhhcCC-CCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccC
Q psy15672 73 IILGTPE--AYN--CINRPKLKQFLQRLKAP-DGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTY 147 (271)
Q Consensus 73 ~~lg~~~--~~~--~~~~~~~~~~l~~~q~~-dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~ 147 (271)
...|... ... ....+++++||.+.+.. ++.| ..-.+..+|.+.|.. .+.+++.|.++..
T Consensus 404 ~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y-----------~~a~layAL~l~g~~----a~~~l~~L~~~~~- 467 (915)
T 2hr0_B 404 QEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSY-----------TVAIAGYALAQMGRL----KGPLLNKFLTTAK- 467 (915)
T ss_dssp HHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHH-----------HHHHHHHHHHTTTCC----CHHHHHHHHHTSB-
T ss_pred HhcccccccCcccchHHHHHHHHHHHHhhhccCCHH-----------HHHHHHHHHHHcCCh----HHHHHHHHHhhcc-
Confidence 8776420 000 11356799999988654 1111 111222245555543 3455666766543
Q ss_pred CCCCCCCCCCC-CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672 148 EGGFSGYPGFE-AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 148 dGGF~~~p~~e-s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
+|.+-..++.. .+...|.|||.+|...+.. ....+.++||.+.|+. +|||..
T Consensus 468 ~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~-~Ggw~S 520 (915)
T 2hr0_B 468 DKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYY-GGGYGS 520 (915)
T ss_dssp TTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCS-SSSCCS
T ss_pred CCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccC-CCCccc
Confidence 44422222221 3566789999999888764 3578999999999887 799875
No 30
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.49 E-value=7.3e-08 Score=84.88 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=96.2
Q ss_pred HHHHHHHhcCCCCCCCCCCC-------------CCCCchHHHHHHHHHHHHhCCCC--cCCcCChHHHHHHHHhhcCCCC
Q psy15672 37 CVVNFLSQCQSPNGGFGGGP-------------GQDPHIAATYAAVNCLIILGTPE--AYNCINRPKLKQFLQRLKAPDG 101 (271)
Q Consensus 37 ~~i~~l~~~q~~dGGF~~~~-------------~~~~~~~~Ty~Av~~L~~lg~~~--~~~~~~~~~~~~~l~~~q~~dG 101 (271)
.+.+-|+..|+++|||.-.. ....|...|..++..|.-+.... ..-.-..+++++||.+.|.++|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 35778999999999998421 11345667888888886653210 0001125789999999999999
Q ss_pred Ceecc-cCC-C-------CChhHHHHHHHHHHHhCc----------------CChhhHHHHHHHHHHcccCCCCCCCCCC
Q psy15672 102 GFHVH-DGG-E-------VDIRGVYCALCVALLTQV----------------YSEDLFNNTREWLTACQTYEGGFSGYPG 156 (271)
Q Consensus 102 gf~~~-~~~-e-------~d~~~ty~a~~~l~ll~~----------------~~~~~~~~~~~~l~~~q~~dGGF~~~p~ 156 (271)
||... +.. . .| -.|--++..|..++. .....++++++||++.|..+||+-.+=+
T Consensus 115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg 193 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC 193 (332)
T ss_dssp CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence 99854 221 1 11 134445555555531 1124678999999999999998654432
Q ss_pred CCCchhhhhh----------hhhHHH-------hhccCCcc----CHHHHHHHHHhccC
Q psy15672 157 FEAHGGYTFC----------GFAALC-------LLKSEHLC----DIKALLRWTTNRQM 194 (271)
Q Consensus 157 ~es~~~~T~~----------al~aL~-------llg~~~~~----~~~~~~~wl~~~Q~ 194 (271)
. -|...|+. +|.++. +++..... -++++++||.++|.
T Consensus 194 ~-qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 194 A-QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp S-EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred c-ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence 2 12222333 333333 23433311 37899999999997
No 31
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.42 E-value=2.1e-06 Score=89.98 Aligned_cols=107 Identities=15% Similarity=0.034 Sum_probs=80.8
Q ss_pred hHHHHHHHHhhcCCCCCeecccC----CCCChhHHHHHHHHHHHhCc---CChhhHHHHHHHHHHcccCCCCCCCCC---
Q psy15672 86 RPKLKQFLQRLKAPDGGFHVHDG----GEVDIRGVYCALCVALLTQV---YSEDLFNNTREWLTACQTYEGGFSGYP--- 155 (271)
Q Consensus 86 ~~~~~~~l~~~q~~dGgf~~~~~----~e~d~~~ty~a~~~l~ll~~---~~~~~~~~~~~~l~~~q~~dGGF~~~p--- 155 (271)
.+++++|+.+.|++||||+.... .+.+...|-.++-.|..+.. .+...++++++||++.|.+||.|....
T Consensus 985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~ 1064 (1451)
T 4acq_A 985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLL 1064 (1451)
T ss_dssp HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCS
T ss_pred HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCccc
Confidence 35678999999999999997643 45788888888888776642 345678999999999999999997321
Q ss_pred -----C-CCCchhhhhhhhhHHHhhccCC-ccCHHHHHHHHHhc
Q psy15672 156 -----G-FEAHGGYTFCGFAALCLLKSEH-LCDIKALLRWTTNR 192 (271)
Q Consensus 156 -----~-~es~~~~T~~al~aL~llg~~~-~~~~~~~~~wl~~~ 192 (271)
+ .+.+...|++++.+|...|... ...++++++||.++
T Consensus 1065 ~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1065 NNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp CGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHH
T ss_pred chhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 1 1345567999999999998643 22466788888754
No 32
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.40 E-value=2.5e-07 Score=83.76 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCC----CCch----HHHHHHHHHHHHhCCC-CcCCc----------CChHHHHHHHH
Q psy15672 34 DKSCVVNFLSQCQSPNGGFGGGPGQ----DPHI----AATYAAVNCLIILGTP-EAYNC----------INRPKLKQFLQ 94 (271)
Q Consensus 34 ~~~~~i~~l~~~q~~dGGF~~~~~~----~~~~----~~Ty~Av~~L~~lg~~-~~~~~----------~~~~~~~~~l~ 94 (271)
..++.++||+++|.+||||+...-. .+|+ ..|-..+..|..++.. ..+.. ...+++++||+
T Consensus 176 Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll 255 (408)
T 1r76_A 176 AALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIV 255 (408)
T ss_dssp HHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHH
Confidence 4678999999999999999864311 1111 2344555555555431 10111 23578999999
Q ss_pred hhcCC-CCCeecccC-----C----------C-CChhHHHHHHHHHHHhCcCC--h---hhHHHHHHHHHHcccCCCCCC
Q psy15672 95 RLKAP-DGGFHVHDG-----G----------E-VDIRGVYCALCVALLTQVYS--E---DLFNNTREWLTACQTYEGGFS 152 (271)
Q Consensus 95 ~~q~~-dGgf~~~~~-----~----------e-~d~~~ty~a~~~l~ll~~~~--~---~~~~~~~~~l~~~q~~dGGF~ 152 (271)
+.|.+ ||+|. ..+ + | .-+...=.+-.++.++.... + ..++++++||.++|++||+|-
T Consensus 256 ~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 256 ETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred HhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence 99999 99997 211 0 0 01111112223333444332 2 258899999999999999986
No 33
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.34 E-value=5.8e-06 Score=88.04 Aligned_cols=176 Identities=10% Similarity=-0.015 Sum_probs=102.2
Q ss_pred CccChHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHH-------HhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHh
Q psy15672 8 LDASRAWICYWICHSLSLLDEP-----LSSADKSCVVNFL-------SQCQSPNGGFGGGPGQDPHIAATYAAVNCLIIL 75 (271)
Q Consensus 8 ~d~~~~~~~y~~l~~L~lL~~~-----~~~~~~~~~i~~l-------~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~l 75 (271)
|-.++.+...+++.-|...+.- .....+++++++| ++.|++||||+...+..++.+.|.+++..|..+
T Consensus 1010 Q~~s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A 1089 (1676)
T 3cu7_A 1010 AELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQV 1089 (1676)
T ss_dssp HHHTTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHH
Confidence 4445555555566555555430 1112344555554 468999999998877788999999999998887
Q ss_pred CCCCcCCcCChHHHHHHHHh-hcCCCCCeecc-c-------CCC------CChhHHHHHHHHHHHhCcC-----ChhhHH
Q psy15672 76 GTPEAYNCINRPKLKQFLQR-LKAPDGGFHVH-D-------GGE------VDIRGVYCALCVALLTQVY-----SEDLFN 135 (271)
Q Consensus 76 g~~~~~~~~~~~~~~~~l~~-~q~~dGgf~~~-~-------~~e------~d~~~ty~a~~~l~ll~~~-----~~~~~~ 135 (271)
...-..+.-..+++++||.+ .|.+||.|... + ++. +++..|..++.+|...+.. ....+.
T Consensus 1090 ~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~ 1169 (1676)
T 3cu7_A 1090 NKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALI 1169 (1676)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHH
Confidence 64211111225678999999 99999999642 1 111 1344444445555443321 123567
Q ss_pred HHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccC
Q psy15672 136 NTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQM 194 (271)
Q Consensus 136 ~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~ 194 (271)
++++||.+.... + .+.......-.+|+++|... ...+++++.|.+...
T Consensus 1170 ~a~~yL~~~~~~---~-------~~~y~~A~lA~Al~l~g~~~-~~a~~~l~~L~~~a~ 1217 (1676)
T 3cu7_A 1170 KADNFLLENTLP---A-------QSTFTLAISAYALSLGDKTH-PQFRSIVSALKREAL 1217 (1676)
T ss_dssp HHHHHHHHHHSS---C-------SCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHCE
T ss_pred HHHHHHHHhhhc---c-------CCHHHHHHHHHHHHhcCCch-hhHHHHHHHHHhhhh
Confidence 899999875421 1 12212222333455566543 125677788877654
No 34
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.30 E-value=5.4e-06 Score=75.35 Aligned_cols=124 Identities=12% Similarity=-0.032 Sum_probs=84.5
Q ss_pred CchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCC-----hhhH
Q psy15672 60 PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS-----EDLF 134 (271)
Q Consensus 60 ~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~-----~~~~ 134 (271)
++....-.++.+|+..|.. + .++.+..|...|. +++|.. ++..|+-.+-.|+.+|..++... ...+
T Consensus 134 tn~Yq~sL~vLALC~~g~~-----v-~~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i 204 (414)
T 2bb6_A 134 TSYYQYSLGILALCVHQKR-----V-HDSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLNPKQRNRI 204 (414)
T ss_dssp SCHHHHHHHHHHHHHTTCC-----C-CHHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred cchHHHHHHHHHHHHcCCC-----c-cHHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCCcchHHHH
Confidence 4555555688888998863 2 4456666666554 344531 23345666667777776664311 2335
Q ss_pred HHHH----HHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCCc---cCHHHHHHHHHhccCCCcCCcC
Q psy15672 135 NNTR----EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL---CDIKALLRWTTNRQMNFEGGFQ 201 (271)
Q Consensus 135 ~~~~----~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~~---~~~~~~~~wl~~~Q~~~~GGf~ 201 (271)
++++ ++|++.|++||+|| +...|..|+.+|...+.... .+..++++||+. |.+ +|+|+
T Consensus 205 ~~al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~-dG~F~ 269 (414)
T 2bb6_A 205 NLALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQ-HKTFQ 269 (414)
T ss_dssp HHHHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHT-TTCCC
T ss_pred HHHHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hcc-CCCCC
Confidence 5555 88889999999997 24458899999999987542 366789999998 877 89997
No 35
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.22 E-value=1.6e-07 Score=99.08 Aligned_cols=162 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCc-CCcCChHHHHHHHHh-hcCCCCCeecc--------cCC
Q psy15672 40 NFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEA-YNCINRPKLKQFLQR-LKAPDGGFHVH--------DGG 109 (271)
Q Consensus 40 ~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~-~~~~~~~~~~~~l~~-~q~~dGgf~~~--------~~~ 109 (271)
.-+++.|++||||+...+.+++.+.|.+++.+|......-. .+.-...++++||.+ .|++||+|... .++
T Consensus 1037 qr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg 1116 (1642)
T 3prx_B 1037 AQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGG 1116 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCC
Confidence 33456899999999876667888899999888776654211 222336789999997 89999999742 122
Q ss_pred ----CCChhHHHHHHHHHHHhCcC-------ChhhHHHHHHHHHHcccC-------------------------------
Q psy15672 110 ----EVDIRGVYCALCVALLTQVY-------SEDLFNNTREWLTACQTY------------------------------- 147 (271)
Q Consensus 110 ----e~d~~~ty~a~~~l~ll~~~-------~~~~~~~~~~~l~~~q~~------------------------------- 147 (271)
+.++..|-.++.+|.-.+.. ....+++++.||.+....
T Consensus 1117 ~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~~~~~l~~l~~~ 1196 (1642)
T 3prx_B 1117 IQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQLNDDRVLMAAST 1196 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHhc
Confidence 23343333333333222211 122456666777643210
Q ss_pred CCCCCCCCCC-CCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCC
Q psy15672 148 EGGFSGYPGF-EAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRT 204 (271)
Q Consensus 148 dGGF~~~p~~-es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~ 204 (271)
++-+-.+|+. ..++..|.+||.++..++.. ......++||.+.|+. .|||..--
T Consensus 1197 ~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~--~~a~~iv~WL~~qr~~-~Ggf~STQ 1251 (1642)
T 3prx_B 1197 GRDHWEEYNAHTHNIEGTSYALLALLKMKKF--DQTGPIVRWLTDQNFY-GETYGQTQ 1251 (1642)
T ss_dssp ----------------------------------------------------------
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhccCch--hhHHHHHHHHHHhccC-CCcccCcH
Confidence 1111112222 13567788888888776643 3577899999998887 79998744
No 36
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.82 E-value=0.00013 Score=66.03 Aligned_cols=133 Identities=10% Similarity=-0.055 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCC---CCcCCcC------
Q psy15672 14 WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGT---PEAYNCI------ 84 (271)
Q Consensus 14 ~~~y~~l~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~---~~~~~~~------ 84 (271)
...=.++.+|.+.+.++ .+..++-|...|+.||+ .-++.++..|+++|.-+.. .. ....
T Consensus 115 Yq~sL~vLALC~~~~~v----~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~-~~~~~~~~i~ 182 (399)
T 2pmv_A 115 YGPSLAILALCQKNSEA----TLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVG-SEEGYRSLFG 182 (399)
T ss_dssp HHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTT-CCSSHHHHHH
T ss_pred hhHHHHHHHHHhcCCCC----CHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccc-cchhhHHHHH
Confidence 33334556666666644 44555555555555531 2367788889999888775 11 1111
Q ss_pred -ChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcC-Chh-hHHHHHHHHHHcccCCCCCCCCCCCCCch
Q psy15672 85 -NRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY-SED-LFNNTREWLTACQTYEGGFSGYPGFEAHG 161 (271)
Q Consensus 85 -~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~-~~~-~~~~~~~~l~~~q~~dGGF~~~p~~es~~ 161 (271)
-.++++++|.+.|++||+|+ ++.+|--|+.+|...+.. ... +..++++||++ |..||+|+ +.
T Consensus 183 ~ai~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np 247 (399)
T 2pmv_A 183 QVLKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NP 247 (399)
T ss_dssp HHHHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SH
T ss_pred HHHHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CH
Confidence 24668888999999999996 577888889898888753 223 68899999999 89999996 34
Q ss_pred hhhhhhhhHHHh
Q psy15672 162 GYTFCGFAALCL 173 (271)
Q Consensus 162 ~~T~~al~aL~l 173 (271)
..|..++=+|.-
T Consensus 248 ~~taQilPaL~~ 259 (399)
T 2pmv_A 248 MSIAQILPSLKG 259 (399)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC
Confidence 566666666544
No 37
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.81 E-value=0.0014 Score=64.46 Aligned_cols=182 Identities=19% Similarity=0.144 Sum_probs=105.6
Q ss_pred ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCCCCCCCCCC--------CC----CCchHHHHHHHHHHHH
Q psy15672 9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQSPNGGFGGGP--------GQ----DPHIAATYAAVNCLII 74 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~~q~~dGGF~~~~--------~~----~~~~~~Ty~Av~~L~~ 74 (271)
..+..|++-|++.+|.....- +++....+.++||.+.|.+||.|...- +. ..++..|.+.+.+|..
T Consensus 393 ~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e 472 (767)
T 4fxk_B 393 RDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHH 472 (767)
T ss_dssp SCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHh
Confidence 346799999999999999764 466678889999999999999996421 11 2345667777777765
Q ss_pred hCCCCcCCc---------CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcc
Q psy15672 75 LGTPEAYNC---------INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQ 145 (271)
Q Consensus 75 lg~~~~~~~---------~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q 145 (271)
.+....... ..+.++++||.....++ + .+....-.+..+|.+.+... ...+.+.+-|.+.-
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--~-------~~~y~~Al~ayaL~l~~~~~-~~~~~~~~~L~~~a 542 (767)
T 4fxk_B 473 GLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--L-------LGAHAAAITAYALSLTKAPV-DLLGVAHNNLMAMA 542 (767)
T ss_dssp HHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--C-------CCHHHHHHHHHHHHHHTCTT-HHHHHHHHHHHTTC
T ss_pred cCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--c-------CCHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHhhc
Confidence 443210000 12456788887665432 1 11111111222344555432 33444555555544
Q ss_pred cCCCCCCCC--CC-C---------------------C-CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCc
Q psy15672 146 TYEGGFSGY--PG-F---------------------E-AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGF 200 (271)
Q Consensus 146 ~~dGGF~~~--p~-~---------------------e-s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf 200 (271)
..+|+.... +. . . .++..|.+||.++...... .....++++||.+.|+. .|||
T Consensus 543 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~~-~~~a~~iv~WL~~Qr~~-~Ggf 620 (767)
T 4fxk_B 543 QETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK-AEMADQASAWLTRQGSF-QGGF 620 (767)
T ss_dssp CBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTCCT-TSSC
T ss_pred EEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHhhcC-CCCC
Confidence 434432211 10 0 0 1245567777766554432 23467899999998776 7999
Q ss_pred CC
Q psy15672 201 QG 202 (271)
Q Consensus 201 ~g 202 (271)
..
T Consensus 621 ~S 622 (767)
T 4fxk_B 621 RS 622 (767)
T ss_dssp SS
T ss_pred cC
Confidence 76
No 38
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.81 E-value=0.00055 Score=72.91 Aligned_cols=176 Identities=18% Similarity=0.176 Sum_probs=111.0
Q ss_pred ccChHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHh-cCCCCCCCCCC-C-------C-----CCCchHHHHHHHHHH
Q psy15672 9 DASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQ-CQSPNGGFGGG-P-------G-----QDPHIAATYAAVNCL 72 (271)
Q Consensus 9 d~~~~~~~y~~l~~L~lL~~~--~~~~~~~~~i~~l~~-~q~~dGGF~~~-~-------~-----~~~~~~~Ty~Av~~L 72 (271)
..+..|++-|++..|..+... +++...+++++||.+ .|+++|.|... + + .++++..|.+++.+|
T Consensus 1071 ~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL 1150 (1661)
T 2b39_A 1071 RPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIAL 1150 (1661)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHH
Confidence 467899999999999988763 567778999999995 99999999632 1 1 123677777888888
Q ss_pred HHhCCCC--cCCc--CChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCC
Q psy15672 73 IILGTPE--AYNC--INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYE 148 (271)
Q Consensus 73 ~~lg~~~--~~~~--~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~d 148 (271)
...|... .+.. ...+++++||.+.... + .++.....+..+|.+.|.. .+++++.|.+... +
T Consensus 1151 ~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~----a~~~l~~L~~~~~-~ 1215 (1661)
T 2b39_A 1151 HEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL----EGDRLTKFLNTAK-E 1215 (1661)
T ss_dssp HHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC----CHHHHHHHHHHSB-T
T ss_pred HhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc----HHHHHHHHHhhcc-C
Confidence 7665310 0001 1245788999775332 1 1111111222345555654 3455666666543 3
Q ss_pred CCCCCCCCC-CCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCC
Q psy15672 149 GGFSGYPGF-EAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQG 202 (271)
Q Consensus 149 GGF~~~p~~-es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~g 202 (271)
|.+-..++. ..+...|.+|+.+|...+... ...+.++||.+.|+. .|||..
T Consensus 1216 ~~~W~~~~~~~~~vE~tayaLlall~~~~~~--~~~~iv~wL~~qr~~-~gg~~S 1267 (1661)
T 2b39_A 1216 KNRWEEPNQKLYNVEATSYALLALLARKDYD--TTPPVVRWLNEQRYY-GGGYGS 1267 (1661)
T ss_dssp TTBCCCSSCHHHHHHHHHHHHHHHHHHTCTT--TSHHHHHHHHHCCTB-TTBBCS
T ss_pred CCCCCCCCCCcchHHHHHHHHHHHHhcCChh--hHHHHHHHHHhcccC-CCCccc
Confidence 332222222 124567888888888877543 467889999998775 689876
No 39
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.76 E-value=0.00075 Score=71.95 Aligned_cols=183 Identities=15% Similarity=0.105 Sum_probs=109.3
Q ss_pred cCccChHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHh-cCCCCCCCCCCC--------CC------CCchHHHHHHH
Q psy15672 7 CLDASRAWICYWICHSLSLLDE--PLSSADKSCVVNFLSQ-CQSPNGGFGGGP--------GQ------DPHIAATYAAV 69 (271)
Q Consensus 7 ~~d~~~~~~~y~~l~~L~lL~~--~~~~~~~~~~i~~l~~-~q~~dGGF~~~~--------~~------~~~~~~Ty~Av 69 (271)
....+..|++-|++..|..+.. .+++...+++++||.+ .|++||.|.... +. ++++..|.+++
T Consensus 1070 ~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl 1149 (1676)
T 3cu7_A 1070 KGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTV 1149 (1676)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHH
Confidence 4557789999999999998865 3577778899999999 999999996421 10 02455666667
Q ss_pred HHHHHhCCCCcC--CcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccC
Q psy15672 70 NCLIILGTPEAY--NCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTY 147 (271)
Q Consensus 70 ~~L~~lg~~~~~--~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~ 147 (271)
.+|...|....+ ......++++||.+.... + .++.....+..+|.+.|... ...+++++.|++....
T Consensus 1150 ~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~lA~Al~l~g~~~-~~a~~~l~~L~~~a~~ 1218 (1676)
T 3cu7_A 1150 IGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFTLAISAYALSLGDKTH-PQFRSIVSALKREALV 1218 (1676)
T ss_dssp HHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHCEE
T ss_pred HHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHhcCCch-hhHHHHHHHHHhhhhh
Confidence 666554321000 011345788999775332 1 11111111222344445432 1256677777776654
Q ss_pred CCC-----CCCCCC------C---C--CchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCC
Q psy15672 148 EGG-----FSGYPG------F---E--AHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGR 203 (271)
Q Consensus 148 dGG-----F~~~p~------~---e--s~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr 203 (271)
+|+ +-..+. . . .+...|.+|+.+|...+. .....+.++||.+.|+. .|||..-
T Consensus 1219 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~--~~~~~~iv~wL~~qr~~-~Gg~~ST 1287 (1676)
T 3cu7_A 1219 KGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD--INYVNPVIKWLSEEQRY-GGGFYST 1287 (1676)
T ss_dssp ETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCS-SSCCSTT
T ss_pred ccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhccCC-CCCcccc
Confidence 443 211110 0 1 144567788877777653 33467889999997765 6898864
No 40
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.75 E-value=1.5e-05 Score=70.15 Aligned_cols=117 Identities=10% Similarity=0.103 Sum_probs=78.8
Q ss_pred HHHHHHHhhcCCCCCeeccc-------------CCCCChhHHHHHHHHHHHhCcC--C---hhhHHHHHHHHHHcccCCC
Q psy15672 88 KLKQFLQRLKAPDGGFHVHD-------------GGEVDIRGVYCALCVALLTQVY--S---EDLFNNTREWLTACQTYEG 149 (271)
Q Consensus 88 ~~~~~l~~~q~~dGgf~~~~-------------~~e~d~~~ty~a~~~l~ll~~~--~---~~~~~~~~~~l~~~q~~dG 149 (271)
.+.+-|...|+++|||.... ....|...|..++..|..+... . ...++++++||++.|..+|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 35788889999999997421 1124566677777766654221 1 3567899999999999999
Q ss_pred CCCCC-CCC-CCch------hhhhhhhhHHHhhccC----------------CccCHHHHHHHHHhccCCCcCCcCCCCC
Q psy15672 150 GFSGY-PGF-EAHG------GYTFCGFAALCLLKSE----------------HLCDIKALLRWTTNRQMNFEGGFQGRTN 205 (271)
Q Consensus 150 GF~~~-p~~-es~~------~~T~~al~aL~llg~~----------------~~~~~~~~~~wl~~~Q~~~~GGf~gr~~ 205 (271)
||+.. |.. .-+. ..|.-+|-.|..++.. ....+++.++||+..|.+ +||+-+|=+
T Consensus 115 GWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~-dggw~g~Wg 193 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWK-QNGVLTVWC 193 (332)
T ss_dssp CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCE-ETTEECCCC
T ss_pred CccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCc-cCCCcCeec
Confidence 99864 221 1111 2355577777776531 012367899999999998 898887744
No 41
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.49 E-value=0.00028 Score=63.77 Aligned_cols=113 Identities=11% Similarity=0.005 Sum_probs=79.1
Q ss_pred HHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhCc---CC---------hhhH
Q psy15672 67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQV---YS---------EDLF 134 (271)
Q Consensus 67 ~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~---~~---------~~~~ 134 (271)
.++.+|++.|.. ..+..+.-|...++.||+. .++..+-.|+.+|.-+.. .. ...+
T Consensus 119 L~vLALC~~~~~------v~~~~v~kLl~~~~~~g~~-------~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai 185 (399)
T 2pmv_A 119 LAILALCQKNSE------ATLPIAVRFAKTLLANSSP-------FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVL 185 (399)
T ss_dssp HHHHHHHHHCHH------HHHHHHHHHHHHHHHCCSC-------CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHH
T ss_pred HHHHHHHhcCCC------CCHHHHHHHHHHHHccCCc-------ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 466777777752 2556667777777777432 134444455555554433 11 2346
Q ss_pred HHHHHHHHHcccCCCCCCCCCCCCCchhhhhhhhhHHHhhccCC--ccCHHHHHHHHHhccCCCcCCcC
Q psy15672 135 NNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH--LCDIKALLRWTTNRQMNFEGGFQ 201 (271)
Q Consensus 135 ~~~~~~l~~~q~~dGGF~~~p~~es~~~~T~~al~aL~llg~~~--~~~~~~~~~wl~~~Q~~~~GGf~ 201 (271)
++++++|++.|++||.|| +...|--|+.+|...+..+ ..+..++++||+. |.+ +|+|+
T Consensus 186 ~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~-~G~F~ 245 (399)
T 2pmv_A 186 KDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIK-QGKFH 245 (399)
T ss_dssp HHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHT-TTTTC
T ss_pred HHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-Hhh-CCCcC
Confidence 788999999999999997 4667889999999998742 3478999999998 766 89997
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.40 E-value=2.3e-05 Score=82.85 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCeecccCCCCChhHHHHHHHHHHHhC---c-CChhhHHHHHHHHHH-cccCCCCCCCCC-------
Q psy15672 88 KLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ---V-YSEDLFNNTREWLTA-CQTYEGGFSGYP------- 155 (271)
Q Consensus 88 ~~~~~l~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~---~-~~~~~~~~~~~~l~~-~q~~dGGF~~~p------- 155 (271)
..+.-+.+.|++||||+...+.+++++.|-.++-.+.... . .+...+.++++||.+ +|.+||.|....
T Consensus 1034 ~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m 1113 (1642)
T 3prx_B 1034 TGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTM 1113 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhc
Confidence 4455566688999999987666677777777777766653 2 445678899999998 899999995431
Q ss_pred -----CCCCchhhhhhhhhHHHhhccCC-------ccCHHHHHHHHHhc
Q psy15672 156 -----GFEAHGGYTFCGFAALCLLKSEH-------LCDIKALLRWTTNR 192 (271)
Q Consensus 156 -----~~es~~~~T~~al~aL~llg~~~-------~~~~~~~~~wl~~~ 192 (271)
+.+.+...|.+++.||.-.+... ...+++++.||.++
T Consensus 1114 ~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1114 QGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp -------------------------------------------------
T ss_pred cCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 22446667888888887765421 12356778888754
No 43
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.84 E-value=0.0037 Score=61.35 Aligned_cols=167 Identities=15% Similarity=0.127 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCC--CchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCCCCC
Q psy15672 35 KSCVVNFLSQCQSPNGGFGGGPGQD--PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVD 112 (271)
Q Consensus 35 ~~~~i~~l~~~q~~dGGF~~~~~~~--~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~e~d 112 (271)
-..+++||+..|.+||+|+...... .-+.+|.+||.+|..-+.. .-.+++++.||.+.-.- +.........
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~----~~~i~~Gl~fl~~nl~~---~~~~~~~~vg 127 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG----HSQVQQGAEFIAENLRL---LNEEDELSPD 127 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHTT---CCTTSCCCTT
T ss_pred ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHh---hcCCCCCCce
Confidence 5689999999999999998643211 2478999999999886542 22478899999876421 1100000011
Q ss_pred hhHHHHHHHHH-HHhCcC---Ch--------------------------------hhHHHHHHH--HHHcccCCCCCCCC
Q psy15672 113 IRGVYCALCVA-LLTQVY---SE--------------------------------DLFNNTREW--LTACQTYEGGFSGY 154 (271)
Q Consensus 113 ~~~ty~a~~~l-~ll~~~---~~--------------------------------~~~~~~~~~--l~~~q~~dGGF~~~ 154 (271)
...++-++.-+ .-+|.. +. +.+...++| |++.|..||+|...
T Consensus 128 feiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~~~~~~~~~p~~llhslE~~~~~~d~~~~~~~~~~~GS~~~S 207 (764)
T 3p5p_A 128 FQIIFPALLQKAKALGINLPYDLPFIKYLSTTREARLTDVSAAADNIPANMLNALEGLEEVIDWNKIMRFQSKDGSFLSS 207 (764)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHHHTSTTSSCGGGGGGGGGSGGGCCTTGGGGGBCTTSCBTTB
T ss_pred eeeeHHHHHHHHHHcCCCCCCCchhHHHHHHhHHHHHhcCchhhcCCCchHHHHHHhccccccHHHHHhccCCCCCcccC
Confidence 11222221111 111210 00 111122444 55666667777655
Q ss_pred CCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC-CCCchhhhhhhhhHHHHHHH
Q psy15672 155 PGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK-LVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 155 p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~ 226 (271)
|. .|.+++.. .+ | +++.+||..-+..+.|| -|+. +.|....-|.+-+|.-||-.
T Consensus 208 Ps------aTAa~l~~---~~-----d-~~~~~YL~~~~~~~~g~---VP~~yP~d~~e~l~lID~LqrLGi~ 262 (764)
T 3p5p_A 208 PA------STACVLMN---TG-----D-EKCFTFLNNLLDKFGGC---VPCMYSIDLLERLSLVDNIEHLGIG 262 (764)
T ss_dssp HH------HHHHHHHH---HC-----C-HHHHHHHHHHHHHHTSC---CCSSCCCHHHHHHHHHHHHHHHTCG
T ss_pred hH------HHHHHHHh---CC-----C-hhHHHHHHHHHHhcCCC---CCCcCCCcHHHHHHHHHHHHHcCCc
Confidence 42 46666542 11 2 58899998765543444 5664 45777778999999988854
No 44
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.68 E-value=0.0051 Score=60.78 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCC--CCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCC-eecccCCCC
Q psy15672 35 KSCVVNFLSQCQSPNGGFGGGPGQ--DPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGG-FHVHDGGEV 111 (271)
Q Consensus 35 ~~~~i~~l~~~q~~dGGF~~~~~~--~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGg-f~~~~~~e~ 111 (271)
-..+++||+..|.+||+|+..... ..-+.+|.+||.+|..-+.. .-.+++++.||.+.-..-.. .. ......
T Consensus 103 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~----~~~i~~Gl~fl~~nl~~~~~~~~-~~~~~v 177 (817)
T 3sdr_A 103 FPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG----DLQVEQGIEFIKSNLELVKDETD-QDSLVT 177 (817)
T ss_dssp SHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHTTCCSGGG-SCSCCT
T ss_pred chHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHhhcccc-cCCCCc
Confidence 368999999999999999864321 12478999999999886642 22477899999886432100 00 000000
Q ss_pred ChhHHHHHHHHH-HHhCcC---Ch---------------------------------hhHHHHHHH--HHHcccCCCCCC
Q psy15672 112 DIRGVYCALCVA-LLTQVY---SE---------------------------------DLFNNTREW--LTACQTYEGGFS 152 (271)
Q Consensus 112 d~~~ty~a~~~l-~ll~~~---~~---------------------------------~~~~~~~~~--l~~~q~~dGGF~ 152 (271)
....++-++.-+ .-+|.. +. +.+...++| |++.|..||+|.
T Consensus 178 gfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~~~~~~~~~~p~~llhslE~l~~~~d~~~~~~~q~~~GS~~ 257 (817)
T 3sdr_A 178 DFEIIFPSLLREAQSLRLGLPYDLPYIHLLQTKRQERLAKLSREEIYAVPSPLLYSLEGIQDIVEWERIMEVQSQDGSFL 257 (817)
T ss_dssp THHHHHHHHHHHHHHTTCSCCTTCHHHHHHHHHHHHHHHTCCSGGGGTSCCGGGGGGGGCTTTCCTTTGGGGCCTTSCBT
T ss_pred ceeeeHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHhCCChhhccCCCchHHHHHHhccccccHHHHHhccCCCCCcc
Confidence 111122111111 111110 00 111122445 666676677776
Q ss_pred CCCCCCCchhhhhhhhhHHHhhccCCccCHHHHHHHHHhccCCCcCCcCCCCCC-CCCchhhhhhhhhHHHHHHH
Q psy15672 153 GYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNK-LVDGCYSFWQGGLFPLIYRS 226 (271)
Q Consensus 153 ~~p~~es~~~~T~~al~aL~llg~~~~~~~~~~~~wl~~~Q~~~~GGf~gr~~k-~~D~cyt~w~~~~L~~l~~~ 226 (271)
..|. .|.+++.. .+ | +++.+||..-+..+.|| -|+. +.|....-|.+-+|.-||-.
T Consensus 258 ~SPs------aTAa~l~~---~~-----d-~~~~~YL~~~~~~~~g~---VP~~yP~d~~e~l~lID~LqrLGi~ 314 (817)
T 3sdr_A 258 SSPA------STACVFMH---TG-----D-AKCLEFLNSVMIKFGNF---VPCLYPVDLLERLLIVDNIVRLGIY 314 (817)
T ss_dssp TBHH------HHHHHHHH---HC-----C-HHHHHHHHHHHHHHSSC---CCSSSCCHHHHHHHHHHHHHHTTCG
T ss_pred cCHH------HHHHHHHh---CC-----C-hhHHHHHHHHHHhcCCC---CCccCCCcHHHHHHHHHHHHHcCCc
Confidence 5543 45555432 12 2 68899998765543444 5664 45777778999999888754
No 45
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=93.85 E-value=0.27 Score=48.59 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCC---CCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccCC-C
Q psy15672 35 KSCVVNFLSQCQS---PNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGG-E 110 (271)
Q Consensus 35 ~~~~i~~l~~~q~---~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~-e 110 (271)
.++.++-|+...+ .||..+. -.+.++.|.+ |+ +.-..+....+--..+++||.+.|.+||+|+..... .
T Consensus 56 ~~~Lie~VK~~l~~~~~~g~~g~---~S~S~YDTAW-VA---mvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~ 128 (817)
T 3sdr_A 56 AEVLVSEIKAMLNPAITGDGESM---ITPSAYDTAW-VA---RVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLL 128 (817)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCC---CCCCHHHHHH-HH---TCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCH
T ss_pred HHHHHHHHHHHhccccCCCCCcc---cccCHHHhhH-Hh---eeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcch
Confidence 3456667776654 5552221 2356788888 32 332211113344578999999999999999743211 0
Q ss_pred C-ChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcc
Q psy15672 111 V-DIRGVYCALCVALLTQVYSEDLFNNTREWLTACQ 145 (271)
Q Consensus 111 ~-d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q 145 (271)
. -+-.|..++.+|.--+. .+..++++++||.+.-
T Consensus 129 ~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 129 SDRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKSNL 163 (817)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 1 24455555555554443 3467889999999753
No 46
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=93.31 E-value=0.23 Score=48.80 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCCCeecccC-CCCC-
Q psy15672 35 KSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDG-GEVD- 112 (271)
Q Consensus 35 ~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-~e~d- 112 (271)
.+..++-|++.-+.- |++. ..+.++.|.+.. ++...+....+--..+++||.+.|.+||+|+.... ...|
T Consensus 33 ~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAWVa----mvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ 104 (785)
T 3s9v_A 33 IETLISEIKNMFRCM-GYGE---TNPSAYDTAWVA----RIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDR 104 (785)
T ss_dssp HHHHHHHHHHHHHHC-SSCC---CCCCHHHHHHHT----TSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHH
T ss_pred HHHHHHHHHHHhhcC-CCCc---ccCcHHHhhHHh----ccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHH
Confidence 445666666554321 2221 235677888832 33221112234457899999999999999975322 2223
Q ss_pred hhHHHHHHHHHHHhCcCChhhHHHHHHHHHHc
Q psy15672 113 IRGVYCALCVALLTQVYSEDLFNNTREWLTAC 144 (271)
Q Consensus 113 ~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~ 144 (271)
+-.|..++.+|.--+. .+..++++++||.+.
T Consensus 105 l~~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 105 ILATLACIITLTLWRT-GETQVQKGIEFFRTQ 135 (785)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc-CHHHHHHHHHHHHHH
Confidence 5566666666655443 245677788888753
No 47
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=92.61 E-value=0.13 Score=50.16 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCC--CchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc
Q psy15672 35 KSCVVNFLSQCQSPNGGFGGGPGQD--PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK 97 (271)
Q Consensus 35 ~~~~i~~l~~~q~~dGGF~~~~~~~--~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q 97 (271)
-..+++||+..|.+||+|+...... .-+.+|.+||.+|..-+.. .-.+++++.||.+.-
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~rGl~fl~~nl 112 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF----PHQCNKGITFFRENI 112 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHH
Confidence 3689999999999999999632222 2478999999999885532 224778999998753
No 48
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=92.48 E-value=0.13 Score=50.51 Aligned_cols=58 Identities=24% Similarity=0.208 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCC-c-hHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhc
Q psy15672 36 SCVVNFLSQCQSPNGGFGGGPGQDP-H-IAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK 97 (271)
Q Consensus 36 ~~~i~~l~~~q~~dGGF~~~~~~~~-~-~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q 97 (271)
..+++||+..|.+||+|+....... + +.+|.+||.+|..-+.. ...+++++.||.+.-
T Consensus 77 p~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~----~~~i~~Gl~fl~~nl 136 (785)
T 3s9v_A 77 PETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG----ETQVQKGIEFFRTQA 136 (785)
T ss_dssp HHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC----HHHHHHHHHHHHHHH
Confidence 6899999999999999986422111 3 88999999999886542 224778999998654
No 49
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=91.67 E-value=0.46 Score=46.59 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCC--CcCCcCChHHHHHHHHhhcCCCCCeecccCC-C
Q psy15672 34 DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTP--EAYNCINRPKLKQFLQRLKAPDGGFHVHDGG-E 110 (271)
Q Consensus 34 ~~~~~i~~l~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~--~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~-e 110 (271)
..+..++-|++..+.- |++. -.+.++.|.+ |+ +.... +....+--..+++||.+.|.+||+|+..... .
T Consensus 9 ~~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAW-Va---mvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~ 80 (764)
T 3p5p_A 9 RADELVVKIKDMFNAL-GDGD---ISPSAYDTAW-VA---RLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSL 80 (764)
T ss_dssp HHHHHHHHHHHHHHTC-SSCC---CCCCHHHHHH-HH---HCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCH
T ss_pred HHHHHHHHHHHHHhcC-CCCc---ccCcHHHHHH-HH---hCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcch
Confidence 3456677777654332 2222 2356778888 32 33211 1112234678999999999999999743210 1
Q ss_pred C-ChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcc
Q psy15672 111 V-DIRGVYCALCVALLTQVYSEDLFNNTREWLTACQ 145 (271)
Q Consensus 111 ~-d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q 145 (271)
. -+-.|..++.+|.--+. .+..++++++||.+.-
T Consensus 81 ~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 81 CDRLLNTTNSVIALSVWKT-GHSQVQQGAEFIAENL 115 (764)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 1 23455555555554343 3467889999998654
No 50
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=78.57 E-value=9 Score=37.25 Aligned_cols=117 Identities=16% Similarity=0.066 Sum_probs=75.1
Q ss_pred HhcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCC-CCCeecccC-CCCChhHHHHHH
Q psy15672 43 SQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAP-DGGFHVHDG-GEVDIRGVYCAL 120 (271)
Q Consensus 43 ~~~q~~dGGF~~~~~~~~~~~~Ty~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~-dGgf~~~~~-~e~d~~~ty~a~ 120 (271)
...|..||+|..+| .+|.+|+.- -+ -+++.+||.+..+. +|+. |. -+.|.-..-+.|
T Consensus 194 ~~~q~~~GS~~~SP------saTAa~l~~---~~---------d~~~l~YL~~~v~k~~g~V---P~~yP~d~~e~L~lI 252 (727)
T 3pya_A 194 LKLQSQDGSFLFSP------SSTAFAFMQ---TR---------DSNCLEYLRNAVKRFNGGV---PNVFPVDLFEHIWIV 252 (727)
T ss_dssp GGGCCTTSSBTTBH------HHHHHHHHH---HC---------CHHHHHHHHHHHHHTTTCC---CSSCCCHHHHHHHHH
T ss_pred hcccCCCCCcccCH------HHHHHHHhc---CC---------CHHHHHHHHHHHHHcCCCC---CCCCCCcHHHHHHHH
Confidence 34566788887654 466666541 22 46889999998654 3333 22 245666677888
Q ss_pred HHHHHhCcCC--hhhHHHHHHHHHHcccCCCCCCCCCC-CCCchhhhhhhhhHHHhhccCCccC
Q psy15672 121 CVALLTQVYS--EDLFNNTREWLTACQTYEGGFSGYPG-FEAHGGYTFCGFAALCLLKSEHLCD 181 (271)
Q Consensus 121 ~~l~ll~~~~--~~~~~~~~~~l~~~q~~dGGF~~~p~-~es~~~~T~~al~aL~llg~~~~~~ 181 (271)
-+|.-||+.. ...++.+.++|-++...+| .+..++ ...|...|.-+.-.|...|..-..|
T Consensus 253 D~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g-~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~D 315 (727)
T 3pya_A 253 DRLQRLGISRYFEEEIKECLDYVHRYWTDNG-ICWARCSHVQDIDDTAMAFRLLRQHGYQVSAD 315 (727)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHHTCCTTC-CCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGG
T ss_pred HHHHHcCCccccHHHHHHHHHHHHHHhhhcC-cccccCCCCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 8888898743 3567788888877654333 332222 3467777888888888888754333
No 51
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=71.16 E-value=61 Score=29.43 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcC--CCCCCCCCCCCCCCc--hHHHHHHHHHHHHhCCCCcCCcCC---hHH----HHHHHHhhcC-CCC
Q psy15672 34 DKSCVVNFLSQCQ--SPNGGFGGGPGQDPH--IAATYAAVNCLIILGTPEAYNCIN---RPK----LKQFLQRLKA-PDG 101 (271)
Q Consensus 34 ~~~~~i~~l~~~q--~~dGGF~~~~~~~~~--~~~Ty~Av~~L~~lg~~~~~~~~~---~~~----~~~~l~~~q~-~dG 101 (271)
..++..+||...+ .++|||......... +...|+++-.|..++... .... .+. +..+...++. +.|
T Consensus 169 ~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~t--gd~~~~y~d~A~~q~~~~~~~l~D~~tG 246 (445)
T 3k11_A 169 LIQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYD--KEAKNKYLAEAVKQFLQFADRMFIPEKG 246 (445)
T ss_dssp HHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHEETTTT
T ss_pred HHHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHH--CCcchHHHHHHHHHHHHHHHhcccCCCC
Confidence 3456778999987 678999864322111 335566666665554310 0111 222 2233444554 456
Q ss_pred Ceecc--c-CCCC-C---hhHHHHHHHHHHH-hCcCC-----h----hhHHHHHHHHHHcccCCCCCCCCCCCC---Cch
Q psy15672 102 GFHVH--D-GGEV-D---IRGVYCALCVALL-TQVYS-----E----DLFNNTREWLTACQTYEGGFSGYPGFE---AHG 161 (271)
Q Consensus 102 gf~~~--~-~~e~-d---~~~ty~a~~~l~l-l~~~~-----~----~~~~~~~~~l~~~q~~dGGF~~~p~~e---s~~ 161 (271)
-|... . .+.. . .|..-|++.++.. +...+ . ..+++.+++++++|.++|-|-.....+ .++
T Consensus 247 L~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~Es 326 (445)
T 3k11_A 247 LYRHGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLET 326 (445)
T ss_dssp EECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEH
T ss_pred CEeeeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCc
Confidence 55421 1 1111 1 3444444443332 22111 1 346788999999999999776543321 222
Q ss_pred hhhh---hhhhHHHhhccCCc----cCHHHHHHHHHhccCCCcCCc
Q psy15672 162 GYTF---CGFAALCLLKSEHL----CDIKALLRWTTNRQMNFEGGF 200 (271)
Q Consensus 162 ~~T~---~al~aL~llg~~~~----~~~~~~~~wl~~~Q~~~~GGf 200 (271)
..|. |+++-..-+|..+. .-.+++.+-|..+-.+ +|-.
T Consensus 327 SaTAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~-dG~l 371 (445)
T 3k11_A 327 SATAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINE-EGQV 371 (445)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCT-TSCB
T ss_pred cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC-CCCE
Confidence 2222 22222223343321 1356788888876554 5543
No 52
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=58.90 E-value=15 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCC
Q psy15672 67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDG 101 (271)
Q Consensus 67 ~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dG 101 (271)
.|..+|+.-+. |++++++||-+...|..
T Consensus 35 qA~kALKat~~-------NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 35 CVLRAMKKKGE-------NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHCS-------CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHcCC-------CHHHHHHHHHhCCCCCC
Confidence 46666666664 69999999999887753
No 53
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=51.06 E-value=17 Score=26.65 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCCcCCcCChHHHHHHHHhhcC-CCCCeec---------ccCCCCChhHHHHHHHHHHHhCcCC-------
Q psy15672 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKA-PDGGFHV---------HDGGEVDIRGVYCALCVALLTQVYS------- 130 (271)
Q Consensus 68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~-~dGgf~~---------~~~~e~d~~~ty~a~~~l~ll~~~~------- 130 (271)
+..+|...|. |.+++++||..++. .|-+|.. ....+.-...-...+..|.-+|...
T Consensus 25 ~~kAl~~~g~-------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL 97 (118)
T 4ae4_A 25 VLRAMKAAGA-------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVL 97 (118)
T ss_dssp HHHHHHHHCS-------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCc-------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHH
Confidence 4556666663 69999999999863 2223321 0011111112234566666666432
Q ss_pred ---hhhHHHHHHHHHHcc
Q psy15672 131 ---EDLFNNTREWLTACQ 145 (271)
Q Consensus 131 ---~~~~~~~~~~l~~~q 145 (271)
..+++++++||.+|-
T Consensus 98 ~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 98 LLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHTTTCHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHhc
Confidence 247899999999874
No 54
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=44.39 E-value=60 Score=28.65 Aligned_cols=94 Identities=11% Similarity=-0.003 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHHhCCCCcC----CcC-ChHHHHHHHHhhcCCCCCeecccCCC-CChhHHHHHHHHHHH---h--CcC
Q psy15672 61 HIAATYAAVNCLIILGTPEAY----NCI-NRPKLKQFLQRLKAPDGGFHVHDGGE-VDIRGVYCALCVALL---T--QVY 129 (271)
Q Consensus 61 ~~~~Ty~Av~~L~~lg~~~~~----~~~-~~~~~~~~l~~~q~~dGgf~~~~~~e-~d~~~ty~a~~~l~l---l--~~~ 129 (271)
+.+.++.-+.+|..+..++.. ..+ ..+++++++.+.|.+||-|......+ +-.-.+-+|+.+..+ . |.+
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l 314 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYV 314 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSS
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCC
Confidence 445555555566664322100 000 13568888999999999998543321 111222233333322 2 333
Q ss_pred Ch---hhHHHHHHHHHHcccCCCCCCCC
Q psy15672 130 SE---DLFNNTREWLTACQTYEGGFSGY 154 (271)
Q Consensus 130 ~~---~~~~~~~~~l~~~q~~dGGF~~~ 154 (271)
+. +..+++.+-|.++.++||-.++.
T Consensus 315 ~~~Y~~~a~ka~~~l~~~i~~dG~l~~v 342 (382)
T 3pmm_A 315 GQHYAGVAEKAIRGIVQNISPQGELLQT 342 (382)
T ss_dssp CGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCCCEeCe
Confidence 32 35678999999998888866543
No 55
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=43.89 E-value=1.1e+02 Score=26.98 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCCCCCCCCCCC---CCCchHHHHHHHHHH-HHh--CCC
Q psy15672 12 RAWICYWICHSLSLLDEPLSS-------ADKSCVVNFLSQCQSPNGGFGGGPG---QDPHIAATYAAVNCL-IIL--GTP 78 (271)
Q Consensus 12 ~~~~~y~~l~~L~lL~~~~~~-------~~~~~~i~~l~~~q~~dGGF~~~~~---~~~~~~~Ty~Av~~L-~~l--g~~ 78 (271)
+-|.+|-.+-.|..+..+.+. ...+++++++.++|.++|-|..... ...+...|...+.+| ..+ |..
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l 314 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYV 314 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSS
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCC
Confidence 458888888888885422111 1245678889999999998875432 223333333322222 222 221
Q ss_pred CcCCcCChHHHHHHHHhhcCCCCCeec
Q psy15672 79 EAYNCINRPKLKQFLQRLKAPDGGFHV 105 (271)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~q~~dGgf~~ 105 (271)
+..-....+++++-|.+...+||....
T Consensus 315 ~~~Y~~~a~ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 315 GQHYAGVAEKAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp CGGGHHHHHHHHHHHHHTBCTTSCBCS
T ss_pred cHHHHHHHHHHHHHHHhhCCCCCCEeC
Confidence 100011356788999998999997654
No 56
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=40.09 E-value=65 Score=29.24 Aligned_cols=93 Identities=19% Similarity=0.092 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCCCCCCCCCCC---CCCchHHHHHHHHHH---HHhCCCCc
Q psy15672 12 RAWICYWICHSLSLLDEPLSS-----ADKSCVVNFLSQCQSPNGGFGGGPG---QDPHIAATYAAVNCL---IILGTPEA 80 (271)
Q Consensus 12 ~~~~~y~~l~~L~lL~~~~~~-----~~~~~~i~~l~~~q~~dGGF~~~~~---~~~~~~~Ty~Av~~L---~~lg~~~~ 80 (271)
+-|.+|-.+-.|..|..+-+. ...+++++++.++|.++|-|..... ...+...|...+.+| .-+|..+.
T Consensus 268 nGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~ 347 (445)
T 3k11_A 268 NGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDA 347 (445)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCH
T ss_pred chHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCH
Confidence 458888888888888764332 2345678899999999998765332 222333333222222 22232110
Q ss_pred C-CcCChHHHHHHHHhhcCCCCCee
Q psy15672 81 Y-NCINRPKLKQFLQRLKAPDGGFH 104 (271)
Q Consensus 81 ~-~~~~~~~~~~~l~~~q~~dGgf~ 104 (271)
- -....+++++.|.+..++||...
T Consensus 348 ~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 348 IAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 0 01124678888888888998653
No 57
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.80 E-value=41 Score=22.00 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=14.4
Q ss_pred ChHHHHHHHHhhcCCCC
Q psy15672 85 NRPKLKQFLQRLKAPDG 101 (271)
Q Consensus 85 ~~~~~~~~l~~~q~~dG 101 (271)
|++++++||.+.+..+|
T Consensus 47 nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 47 DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp CHHHHHHHHHHCCSSSC
T ss_pred CHHHHHHHHHhCCCccC
Confidence 79999999999876654
No 58
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=34.50 E-value=94 Score=27.25 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=79.4
Q ss_pred cChHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCCCC-CCCCC-----CC---CCCchHHHHHHHHH---HHHh
Q psy15672 10 ASRAWICYWICHSLSLLDEPLS--SADKSCVVNFLSQCQSPNG-GFGGG-----PG---QDPHIAATYAAVNC---LIIL 75 (271)
Q Consensus 10 ~~~~~~~y~~l~~L~lL~~~~~--~~~~~~~i~~l~~~q~~dG-GF~~~-----~~---~~~~~~~Ty~Av~~---L~~l 75 (271)
...+...||...++..|...-+ ....++.++.|..-.-+|+ +|... .. .+..+ .|--++.+ |.-.
T Consensus 166 ~~~ln~SY~~~~a~~~f~~~~~~W~~l~~~g~~lL~~g~p~D~~~l~~~~~~~~~~~y~yd~~v-n~iDalrv~L~La~~ 244 (350)
T 3ren_A 166 GNTTTLCYLDLPTMKLLSQVDKKWEGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENV-DFLLSTIVILNRIEA 244 (350)
T ss_dssp CSEEEGGGCCHHHHHHHHHHCTHHHHHHHHHHHHHHTTBCCSSSCCBCSEEETTTTEECCCSEE-EHHHHHHHHHHHHHT
T ss_pred CCEeehHhcCHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCcccccCCcccccCCCCccccccc-chHHHHHHHHHHHhc
Confidence 4445567777777776654211 2234567777777444552 34321 00 11111 11122222 3333
Q ss_pred CCCCcCCcCChHHHHHHHHhhcCCCC----CeecccC--CCCChhHHHHHHHHHHHhCcCChhhHHHHHHHHHHcccCC-
Q psy15672 76 GTPEAYNCINRPKLKQFLQRLKAPDG----GFHVHDG--GEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYE- 148 (271)
Q Consensus 76 g~~~~~~~~~~~~~~~~l~~~q~~dG----gf~~~~~--~e~d~~~ty~a~~~l~ll~~~~~~~~~~~~~~l~~~q~~d- 148 (271)
|. +.....+|+++.-..+| .|....+ .+......+.|++++..+-.-+.+..+.+++-+...|..|
T Consensus 245 g~-------~~~~~~~fl~~~~~~~g~l~~~y~~~tg~~~~~~eS~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~ 317 (350)
T 3ren_A 245 GE-------NEESSIKWIKEKFKKDGFLVATYNGKNGDATSQIESPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNK 317 (350)
T ss_dssp TC-------CCHHHHHHHHHHHHHHSSCCSEEETTTCCBCCCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCT
T ss_pred CC-------CcHHHHHHHHHHHhhcCCcceEEECCCCCcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCC
Confidence 43 24456889885322233 2221112 1223445566777776665456788899999999888766
Q ss_pred -----CCCCCCCCCCCchhhhhhhhhHHH
Q psy15672 149 -----GGFSGYPGFEAHGGYTFCGFAALC 172 (271)
Q Consensus 149 -----GGF~~~p~~es~~~~T~~al~aL~ 172 (271)
|||+....... |+|=-|.+|.
T Consensus 318 ~s~yyGG~~~~~~~~~---~sfdNL~~Ll 343 (350)
T 3ren_A 318 DSVLYGGFGDEKTNSV---YSFDNLNALL 343 (350)
T ss_dssp TSTTTTSCSBTTTTBC---BHHHHHHHHH
T ss_pred CcccCCcccccCCCce---eeeccHHHHH
Confidence 88886655544 4454554443
No 59
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.71 E-value=49 Score=22.06 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCCC
Q psy15672 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDG 101 (271)
Q Consensus 68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~dG 101 (271)
++.+|...+. |++++++||.+.+.++-
T Consensus 47 ~~~AL~~t~G-------nve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 47 NLQALVATDG-------DIHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHTTS-------CHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHhCC-------CHHHHHHHHHhCCCCCC
Confidence 3455555443 69999999999877653
No 60
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=29.64 E-value=1.7e+02 Score=25.32 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCC-CCCCCCC---C---CCCCchHHHHHHHHHH-HH--hC
Q psy15672 12 RAWICYWICHSLSLLDEPLSS-----ADKSCVVNFLSQCQSP-NGGFGGG---P---GQDPHIAATYAAVNCL-II--LG 76 (271)
Q Consensus 12 ~~~~~y~~l~~L~lL~~~~~~-----~~~~~~i~~l~~~q~~-dGGF~~~---~---~~~~~~~~Ty~Av~~L-~~--lg 76 (271)
+-|.+|-.+-.|..|..+-+. ...+++++++.++|.+ ||-|... + +...+...|...+.+| .. .|
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g 294 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKG 294 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCC
Confidence 346777777777777443211 1235678899999997 8876531 1 2223333333222222 22 23
Q ss_pred CCCcCCcCChHHHHHHHHhh---cCCCCCe
Q psy15672 77 TPEAYNCINRPKLKQFLQRL---KAPDGGF 103 (271)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~---q~~dGgf 103 (271)
..+..-....+++++.|.+. ..+||..
T Consensus 295 ~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~l 324 (373)
T 1nc5_A 295 YLDRAYETTLLKAYQGLIQHKTETSEDGAF 324 (373)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHEEECTTSCE
T ss_pred CCcHHHHHHHHHHHHHHHHhceeECCCCCE
Confidence 21110112357788888663 4788855
No 61
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=28.05 E-value=2.3e+02 Score=24.54 Aligned_cols=70 Identities=16% Similarity=0.062 Sum_probs=35.9
Q ss_pred HHHHHHHHH-hcCC-CCCCCCCC------CC-CCCchHH----HHHHHHHHHHh---CCCCcCCcCChHHHHHHHHhh-c
Q psy15672 35 KSCVVNFLS-QCQS-PNGGFGGG------PG-QDPHIAA----TYAAVNCLIIL---GTPEAYNCINRPKLKQFLQRL-K 97 (271)
Q Consensus 35 ~~~~i~~l~-~~q~-~dGGF~~~------~~-~~~~~~~----Ty~Av~~L~~l---g~~~~~~~~~~~~~~~~l~~~-q 97 (271)
.++++.|.. .... ..|||... +. .+..+.. .+....+...+ |.++. .--.+++++||.+. +
T Consensus 19 ~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~~~~k~l~~nar~l~~~a~a~~~~~~~~~~~~--l~~A~~~~~fl~~~~~ 96 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPEL--LDAAKAGGEFLLRHAR 96 (402)
T ss_dssp HHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCGGGCCHHH--HHHHHHHHHHHHHHTB
T ss_pred HHHHHHHhhccCCCCCCCCEeeEECCCCCCCCCccchhhhHHHHHHHHHHHHHhcccCCHHH--HHHHHHHHHHHHHhcc
Confidence 467777776 4555 46898542 22 1222333 22222222333 43211 11257799998886 5
Q ss_pred CCCC--Ceecc
Q psy15672 98 APDG--GFHVH 106 (271)
Q Consensus 98 ~~dG--gf~~~ 106 (271)
.++| +|...
T Consensus 97 d~~gg~g~~~s 107 (402)
T 1fp3_A 97 VAPPEKKCAFV 107 (402)
T ss_dssp SSTTSCCBCSE
T ss_pred CcCCCCceEEE
Confidence 6664 78754
No 62
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.82 E-value=81 Score=19.44 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCCcCCcCChHHHHHHHHhhcCC
Q psy15672 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAP 99 (271)
Q Consensus 68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~ 99 (271)
++.+|...+. |++++++||.+....
T Consensus 27 n~~AL~~~~G-------dv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 27 NLQALIATGG-------DVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHTS-------CHHHHHHHHHHHSCS
T ss_pred HHHHHHHcCC-------CHHHHHHHHHhCCCc
Confidence 4566666653 699999999987644
No 63
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.11 E-value=71 Score=21.19 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCC
Q psy15672 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPD 100 (271)
Q Consensus 68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~d 100 (271)
|+.+|..-+. |.+++++||.+.+.|+
T Consensus 46 a~~AL~~~~~-------nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 46 VEVALAAADD-------DLTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHTS-------CHHHHHHHHHTCSCSS
T ss_pred HHHHHHHhCC-------CHHHHHHHHHHCCCCC
Confidence 4455555542 6999999999887765
No 64
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.00 E-value=64 Score=21.30 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=18.5
Q ss_pred hhhHHHhhccCCccCHHHHHHHHHhccCC
Q psy15672 167 GFAALCLLKSEHLCDIKALLRWTTNRQMN 195 (271)
Q Consensus 167 al~aL~llg~~~~~~~~~~~~wl~~~Q~~ 195 (271)
|..||...+. +++++++||.+++..
T Consensus 46 a~~AL~~t~~----nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 46 ARKALKASGG----DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHTTS----CHHHHHHHHHHSCCS
T ss_pred HHHHHHHhCC----CHHHHHHHHHhCCCC
Confidence 5566665542 689999999998765
No 65
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.87 E-value=74 Score=20.35 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=18.1
Q ss_pred hhhHHHhhccCCccCHHHHHHHHHhccCC
Q psy15672 167 GFAALCLLKSEHLCDIKALLRWTTNRQMN 195 (271)
Q Consensus 167 al~aL~llg~~~~~~~~~~~~wl~~~Q~~ 195 (271)
|..+|...+. .+++++++||.+++..
T Consensus 36 a~~AL~~t~~---~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 36 AQKALASTGG---RSVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHTTT---SCHHHHHHHHHSCCSC
T ss_pred HHHHHHHcCC---CCHHHHHHHHHhCCCC
Confidence 4555555442 2689999999998765
No 66
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=22.79 E-value=93 Score=18.97 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCCcCCcCChHHHHHHHHhhc
Q psy15672 67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLK 97 (271)
Q Consensus 67 ~Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q 97 (271)
.++.+|...+. |++++++||.+.+
T Consensus 28 ~~~~AL~~t~g-------nve~Ave~L~~~~ 51 (53)
T 2knz_A 28 ANLQALIATGG-------DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTS-------CHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC-------CHHHHHHHHHHcC
Confidence 35666766653 6999999998764
No 67
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.47 E-value=1e+02 Score=19.65 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCCcCCcCChHHHHHHHHhhcCCC
Q psy15672 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPD 100 (271)
Q Consensus 68 Av~~L~~lg~~~~~~~~~~~~~~~~l~~~q~~d 100 (271)
|+.+|..-+. |++++++||.+.+.+.
T Consensus 26 a~~AL~~~~~-------nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 26 SRQALMDNGN-------NLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHTTS-------CHHHHHHHHHHHSSCC
T ss_pred HHHHHHHhCC-------CHHHHHHHHHHCCCCc
Confidence 4555555542 6999999999887654
No 68
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=20.95 E-value=19 Score=18.20 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=9.4
Q ss_pred CCCCccCc--cChHHH
Q psy15672 2 SRVGNCLD--ASRAWI 15 (271)
Q Consensus 2 p~~~~~~d--~~~~~~ 15 (271)
|+.|.++| +.|+|-
T Consensus 5 psvftsqdylsdhlwr 20 (26)
T 2xl1_A 5 PSVFTSQDYLSDHLWR 20 (26)
T ss_pred CceeecHHHHHHHHHH
Confidence 77888887 445553
No 69
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=20.22 E-value=2.7e+02 Score=24.03 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCC-CCCeecc---c---CCCCChhHHHHHHH-HHHH--hCcCCh---hhHHHHHHHHHHc---ccCCCC
Q psy15672 87 PKLKQFLQRLKAP-DGGFHVH---D---GGEVDIRGVYCALC-VALL--TQVYSE---DLFNNTREWLTAC---QTYEGG 150 (271)
Q Consensus 87 ~~~~~~l~~~q~~-dGgf~~~---~---~~e~d~~~ty~a~~-~l~l--l~~~~~---~~~~~~~~~l~~~---q~~dGG 150 (271)
+++++++.+.|.+ ||.|... + +...++..|-..+. .+.. .|..+. +..+++.+.|.+. .++||-
T Consensus 244 ~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~ 323 (373)
T 1nc5_A 244 QDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGA 323 (373)
T ss_dssp HHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred HHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence 5678889999997 9987732 1 11233333222222 2222 233332 3467788888773 466774
Q ss_pred C
Q psy15672 151 F 151 (271)
Q Consensus 151 F 151 (271)
.
T Consensus 324 l 324 (373)
T 1nc5_A 324 F 324 (373)
T ss_dssp E
T ss_pred E
Confidence 3
Done!