RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15672
(271 letters)
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins
containing the protein prenyltransferase (PTase) domain,
beta subunit (alpha 6 - alpha 6 barrel fold). FTases are
a subgroup of PTase family of lipid-modifying enzymes.
PTases catalyze the carboxyl-terminal lipidation of Ras,
Rab, and several other cellular signal transduction
proteins, facilitating membrane associations and
specific protein-protein interactions. These proteins
are heterodimers of alpha and beta subunits. Both
subunits are required for catalytic activity.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between cysteine residues at or near the C-terminus of
protein acceptors and the C1 atom of isoprenoid lipids.
Ftase attaches a 15-carbon farnesyl group to the
cysteine within the C-terminal CaaX motif of substrate
proteins when X is Ala, Met, Ser, Cys or Gln. Protein
farnesylation has been shown to play critical roles in a
variety of cellular processes including Ras/mitogen
activated protein kinase signaling pathways in mammals
and, abscisic acid signal transduction in Arabidopsis.
Length = 299
Score = 414 bits (1067), Expect = e-147
Identities = 149/260 (57%), Positives = 178/260 (68%), Gaps = 1/260 (0%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
LDASR W+ YWI HSL LL E L + V++FL +CQ+P+GGFGGGPGQ PH+A TY
Sbjct: 21 SLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTY 80
Query: 67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
AAVN L I+GT EAY+ I+R L +FL LK PDG F +H GGEVD+RG YCA+ VA L
Sbjct: 81 AAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLL 140
Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
+ +++LF E++ +CQTYEGGF G PG EAHGGYTFC AAL +L D+++LL
Sbjct: 141 NILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLL 200
Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
RW RQM FEGGFQGRTNKLVDGCYSFW GG P++ L LF A
Sbjct: 201 RWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEA 260
Query: 246 LQEYILICCQHFNGGLLDKP 265
LQEYIL+CCQ GGL DKP
Sbjct: 261 LQEYILLCCQSEEGGLRDKP 280
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta
subunit (alpha 6 - alpha 6 barrel fold). The protein
prenyltransferase family of lipid-modifying enzymes
includes protein farnesyltransferase (FTase) and
geranylgeranyltransferase types I and II (GGTase-I and
GGTase-II). They catalyze the carboxyl-terminal
lipidation of Ras, Rab, and several other cellular
signal transduction proteins, facilitating membrane
associations and specific protein-protein interactions.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between the C1 atom of farnesyl (15-carbon by FTase) or
geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid
lipids and cysteine residues at or near the C-terminus
of protein acceptors. FTase and GGTase-I prenylate the
cysteine in the terminal sequence, "CAAX"; and GGTase-II
prenylates both cysteines in the "CC" (or "CXC")
terminal sequence. These enzymes are heterodimeric with
both alpha and beta subunits required for catalytic
activity. In contrast to other prenyltransferases,
GGTase-II does not recognize its protein acceptor
directly but requires Rab to complex with REP (Rab
escort protein) before prenylation can occur. These
enzymes are found exclusively in eukaryotes.
Length = 286
Score = 330 bits (848), Expect = e-114
Identities = 123/264 (46%), Positives = 154/264 (58%), Gaps = 14/264 (5%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQ-SPNGGFGGGPGQDPHIAAT 65
LDASR W+ YWI SL LL E L +K +++F+ CQ + +GGFGGGPGQDPH+A+T
Sbjct: 21 SLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAST 80
Query: 66 YAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALL 125
YAAV L ILG +A + I+R K+ +FL L+ PDG F GGEVD R VYCAL + L
Sbjct: 81 YAAVLSLAILGD-DALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSL 139
Query: 126 TQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKAL 185
+ ++ +++ +CQ Y+GGF G PG E+HGGYTFC A+L LL L D + L
Sbjct: 140 LNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERL 199
Query: 186 LRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRA 245
LRW RQ+ GGF GR NKLVD CYSFW G + L L
Sbjct: 200 LRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKI------------LGRLHLIDQEK 247
Query: 246 LQEYILICCQHFNGGLLDKPENMV 269
L+EYIL C Q GG DKP
Sbjct: 248 LREYILSCQQSEVGGFSDKPGKPP 271
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta.
Length = 439
Score = 306 bits (785), Expect = e-103
Identities = 141/305 (46%), Positives = 179/305 (58%), Gaps = 48/305 (15%)
Query: 8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYA 67
LDA+R W+CYWI HS++LL E L ++ ++FLS+CQ PNGG+GGGPGQ PH+A TYA
Sbjct: 67 LDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYA 126
Query: 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ 127
AVN L+ +G A + INR KL FL R+K P GGF +HDGGE+D+R Y A+ VA L
Sbjct: 127 AVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLN 186
Query: 128 VYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLR 187
+ ++L +++ +CQTYEGG G PG EAHGGYTFCG AA+ L+ D+ +L+
Sbjct: 187 ILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLIN 246
Query: 188 WTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYR--------------SLMK---A 230
W RQ EGGFQGRTNKLVDGCYSFWQGG+F L+ + S+M
Sbjct: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELE 305
Query: 231 GDTCLDGHW------------------------------LFHHRALQEYILICCQHFNGG 260
D C LFH ALQ+YIL+C Q +GG
Sbjct: 306 DDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGG 365
Query: 261 LLDKP 265
L DKP
Sbjct: 366 LRDKP 370
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational
modification, protein turnover, chaperones].
Length = 342
Score = 241 bits (617), Expect = 8e-79
Identities = 104/261 (39%), Positives = 142/261 (54%), Gaps = 14/261 (5%)
Query: 8 LDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYA 67
L+ASR YW +SL +L + DK ++F+ C P+GGFGGGPGQD H+A+T
Sbjct: 50 LEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVF 109
Query: 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQ 127
A+ L +L + + + I+R L F+ LK PDG F GEVD R +Y AL + L
Sbjct: 110 AIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLG 169
Query: 128 VYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKS-EHLCDIKALL 186
++LF ++L CQ YEGGF P EAH GYTFC AAL LL + L D++ L+
Sbjct: 170 DLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLI 229
Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRAL 246
RW RQ++ GG GR+NKLVD CYSFW ++ + ++ L
Sbjct: 230 RWLAERQLS-SGGLNGRSNKLVDTCYSFWVLSSLAILGKLD------FINTE------EL 276
Query: 247 QEYILICCQHFNGGLLDKPEN 267
+YIL C Q +GG D+P
Sbjct: 277 TDYILDCQQETSGGFSDRPGE 297
Score = 60.5 bits (147), Expect = 1e-10
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 8/171 (4%)
Query: 15 ICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLII 74
Y LSLL + L V++L +CQ+ GGFG P + H T+ A+ L +
Sbjct: 157 FLYIALSILSLLGD-LDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALAL 215
Query: 75 LGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLF 134
LG + + + KL ++L + GG + VD Y ++ L + D
Sbjct: 216 LGKLDKLS--DVEKLIRWLAERQLSSGGLNGRSNKLVD--TCYSFWVLSSLAILGKLDFI 271
Query: 135 NN---TREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDI 182
N T L Q GGFS PG E +T G A L L++ ++L +
Sbjct: 272 NTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKYLNPV 322
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene
cyclases, protein prenyltransferases beta subunit, two
broadly specific proteinase inhibitors
alpha2-macroglobulin (alpha (2)-M) and pregnancy zone
protein (PZP) and, the C3 C4 and C5 components of
vertebrate complement. Class II terpene cyclases include
squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase
(OSQCY), these integral membrane proteins catalyze a
cationic cyclization cascade converting linear
triterpenes to fused ring compounds. The protein
prenyltransferases include protein farnesyltransferase
(FTase) and geranylgeranyltransferase types I and II
(GGTase-I and GGTase-II) which catalyze the
carboxyl-terminal lipidation of Ras, Rab, and several
other cellular signal transduction proteins,
facilitating membrane associations and specific
protein-protein interactions. Alpha (2)-M is a major
carrier protein in serum and involved in the
immobilization and entrapment of proteases. PZP is a
pregnancy associated protein. Alpha (2)-M and PZP are
known to bind to and, may modulate, the activity of
placental protein-14 in T-cell growth and cytokine
production thereby protecting the allogeneic fetus from
attack by the maternal immune system.
Length = 300
Score = 171 bits (436), Expect = 3e-52
Identities = 85/280 (30%), Positives = 115/280 (41%), Gaps = 30/280 (10%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSC-----VVNFLSQCQSPNGGFGGGPGQD-P 60
L + W W +L LL DK+ + L Q +GGF G G D P
Sbjct: 21 SLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYP 80
Query: 61 HIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHD-------GGEVDI 113
+ T A+ L++ G A + I+ + +L L+ DGGF G E D+
Sbjct: 81 SLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDV 140
Query: 114 RGVYCALCVALLTQVYSED-LFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALC 172
R AL L D L ++L +CQ Y+GGF PG E+HG T C AAL
Sbjct: 141 RLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGFG--PGGESHGYGTACAAAALA 198
Query: 173 LLKSEHLCDIKALLRWTTNRQMNFEGGFQGR--TNKLVDGCYSFWQGGLFPLIYRSLMKA 230
LL D K LRW +RQ G +GR TNKL D CY+ W +L+
Sbjct: 199 LLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAY-------ALLAL 251
Query: 231 GDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMVA 270
G L L ++ L+ Q+ +GG KP
Sbjct: 252 G----KLGDLEDAEKLVKW-LLSQQNEDGGFSSKPGKSYD 286
Score = 75.3 bits (185), Expect = 9e-16
Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 9/170 (5%)
Query: 9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAA 68
D S + + +L+LL + +++L CQ+ +GGFG PG + H T A
Sbjct: 136 DESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGFG--PGGESHGYGTACA 193
Query: 69 VNCLIILGTPEAYNCINRPKLKQFL-QRLKAPDGGFHVHDGGEVDIRGVYCALCV-ALLT 126
L +LG + + K ++L R + G D Y ALL
Sbjct: 194 AAALALLG---DLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLA 250
Query: 127 QVYSEDLFNNTR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL 174
DL + + +WL + Q +GGFS PG +T AL L
Sbjct: 251 LGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSLY 300
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I
(GGTase-I)-like proteins containing the protein
prenyltransferase (PTase) domain, beta subunit (alpha 6
- alpha 6 barrel fold). GGTase-I s are a subgroup of the
protein prenyltransferase family of lipid-modifying
enzymes PTases catalyze the carboxyl-terminal lipidation
of Ras, Rab, and several other cellular signal
transduction proteins, facilitating membrane
associations and specific protein-protein interactions.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between cysteine residues at or near the C-terminus of
protein acceptors and the C1 atom of isoprenoid lipids
(geranylgeranyl (20-carbon) in the case of GGTase-I ).
GGTase-I prenylates the cysteine in the terminal
sequence, "CAAX" when X is Leu or Phe. Substrates for
GTTase-I include the gamma subunit of neural G-proteins
and several Ras-related G-proteins. PTases are
heterodimeric with both alpha and beta subunits required
for catalytic activity.
Length = 307
Score = 170 bits (434), Expect = 8e-52
Identities = 87/277 (31%), Positives = 128/277 (46%), Gaps = 39/277 (14%)
Query: 8 LDASRAWICYWICHSLSLLDEP--LSSADKSCVVNFLSQCQS----PNGGFGGGPG---- 57
LD +R I ++ L LL + +K ++ ++ Q P GGF G
Sbjct: 22 LDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLP 81
Query: 58 ------QDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGF---HVHDG 108
++A TY A+ L+ILG + ++R + FL +L+ PDG F +G
Sbjct: 82 GTASKYDTGNLAMTYFALLSLLILGDDLSR--VDRKAILNFLSKLQLPDGSFGSVLDSEG 139
Query: 109 GEVDIRGVYCALCVALLTQVYSEDLFNNTR--EWLTACQTYEGGFSGYPGFEAHGGYTFC 166
GE D+R YCA+ + + +SE+ + + +++ + Q+Y+GGF PG E+HGG TFC
Sbjct: 140 GENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFC 199
Query: 167 GFAALCLLKSEHLCDIK---ALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223
A+L LL K L RW +RQ++ GF GR NK D CYSFW G
Sbjct: 200 AIASLSLLGKLEELSEKFLERLKRWLVHRQVS-GTGFNGRPNKPADTCYSFWVGA----- 253
Query: 224 YRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGG 260
SL LD L + Y+L Q GG
Sbjct: 254 --SLK-----LLDAFQLIDFEKNRNYLLSTQQSLVGG 283
Score = 58.8 bits (143), Expect = 4e-10
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 16 CYWICHSLSLLDEPLSSA-DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLII 74
CY +LD+ DK +++++ QS +GGFG GPG + H +T+ A+ L +
Sbjct: 147 CYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSL 206
Query: 75 LGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVA---LLTQVYSE 131
LG E + +LK++L + GF+ D Y A LL
Sbjct: 207 LGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADT--CYSFWVGASLKLLDAFQLI 264
Query: 132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL 174
D N L+ Q+ GGF+ P +++ G AAL L+
Sbjct: 265 DFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II
(GGTase-II)_like proteins containing the protein
prenyltransferase (PTase) domain, beta subunit (alpha 6
- alpha 6 barrel fold). GGTase-IIs are a subgroup of the
protein prenyltransferase family of lipid-modifying
enzymes. PTases catalyze the carboxyl-terminal
lipidation of Ras, Rab, and several other cellular
signal transduction proteins, facilitating membrane
associations and specific protein-protein interactions.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between cysteine residues at or near the C-terminus of
protein acceptors and the C1 atom of isoprenoid lipids
(geranylgeranyl (20-carbon) in the case of GGTase-II ).
GGTase-II catalyzes alkylation of both cysteine residues
in Rab proteins containing carboxy-terminal "CC", "CXCX"
or "CXC" motifs. PTases are heterodimeric with both
alpha and beta subunits required for catalytic activity.
In contrast to other prenyltransferases, GGTas-II
requires an escort protein to bring the substrate
protein to the catalytic heterodimer and to escort the
geryanylgeranylated product to the membrane.
Length = 287
Score = 164 bits (418), Expect = 2e-49
Identities = 92/257 (35%), Positives = 130/257 (50%), Gaps = 22/257 (8%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPN-GGFGGGPGQDPHIAATYAAVNCLIIL 75
YW +L LL + ++ ++ F+ CQ GGFGG PG DPHI +T +A+ L +
Sbjct: 34 YWGLTALDLLGQL-ERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALY 92
Query: 76 GTPEAYNCINRPKLK--QFLQRLKAPDGGFHVHDGGEVDIRGVYCAL-CVALLTQVYSED 132
+ N I+ K K +F++ L+ DG F GEVD R YCA+ C+ LL ++ D
Sbjct: 93 ---DLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLID 149
Query: 133 LFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNR 192
+ + ++L +C ++GGF PG E+H G FC AL +L S L D L W R
Sbjct: 150 V-DKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCER 208
Query: 193 QMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILI 252
Q+ GG GR KL D CYS+W + SL G HW + L+ +IL
Sbjct: 209 QLP-SGGLNGRPEKLPDVCYSWW-------VLSSLKIIGRL----HW-INKNKLKNFILA 255
Query: 253 CCQHFNGGLLDKPENMV 269
C +GG D+P NMV
Sbjct: 256 CQDEEDGGFADRPGNMV 272
Score = 68.4 bits (168), Expect = 2e-13
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 7/179 (3%)
Query: 38 VVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK 97
+ F+ Q+ +G F G + +Y AV CL +LG + I+ K +L
Sbjct: 105 IAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLG---KLDLIDVDKAVDYLLSCY 161
Query: 98 APDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTR--EWLTACQTYEGGFSGYP 155
DGGF G E ++C CV L + S DL + R WL Q GG +G P
Sbjct: 162 NFDGGFGCRPGAESHAGQIFC--CVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRP 219
Query: 156 GFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSF 214
Y++ ++L ++ H + L + Q +GGF R +VD ++F
Sbjct: 220 EKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTF 278
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit;
Provisional.
Length = 316
Score = 140 bits (356), Expect = 4e-40
Identities = 86/253 (33%), Positives = 126/253 (49%), Gaps = 17/253 (6%)
Query: 17 YWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
YW +L LL L D+ VV+++ +CQ +GGFGG G DPHI T +AV IL
Sbjct: 41 YWGLTALDLLG-KLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQ---ILA 96
Query: 77 TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNN 136
+ + ++ K+ ++ L+ DG F + GE+D R YCALC L + +
Sbjct: 97 LFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEK 156
Query: 137 TREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNF 196
+++ +C+ ++GGF PG E+H G FC AL + S H D L W RQ+
Sbjct: 157 AVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVK- 215
Query: 197 EGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQH 256
GG GR KL D CYS+W + SL+ HW+ L ++IL C
Sbjct: 216 SGGLNGRPEKLPDVCYSWW-------VLSSLIIIDRV----HWI-DKDKLAKFILDCQDD 263
Query: 257 FNGGLLDKPENMV 269
NGG+ D+P++ V
Sbjct: 264 ENGGISDRPDDAV 276
Score = 57.8 bits (140), Expect = 9e-10
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 14/192 (7%)
Query: 23 LSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYN 82
L+L D L D V ++++ Q+ +G F G + +Y A+ CL +L +
Sbjct: 95 LALFDR-LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLD--- 150
Query: 83 CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS-----EDLFNNT 137
IN K ++ K DGGF GGE ++C CV L S +DL
Sbjct: 151 KINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFC--CVGALAITGSLHHVDKDLLG-- 206
Query: 138 REWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE 197
WL Q GG +G P Y++ ++L ++ H D L ++ + Q +
Sbjct: 207 -WWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDEN 265
Query: 198 GGFQGRTNKLVD 209
GG R + VD
Sbjct: 266 GGISDRPDDAVD 277
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like.
Length = 112
Score = 77.4 bits (191), Expect = 4e-18
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 39 VNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKA 98
V++L Q+P+GG+G G +A T A+ L LG + K +L +
Sbjct: 1 VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETP-----DVKKALAWLLSQQN 55
Query: 99 PDGGFH-VHDGGEVDIRGVYCALCVALLTQVYSEDLF-NNTREWLTACQTYEGGFS 152
PDGGF D+ AL L +D ++L +CQ +GGF
Sbjct: 56 PDGGFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFG 111
Score = 48.5 bits (116), Expect = 1e-07
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGP-GQDPHIAATYA 67
S + +L+ L E + +L Q+P+GGFG P P +++T
Sbjct: 20 GGSDVAMTALALLALAALGETPDVKK---ALAWLLSQQNPDGGFGYDPQSNSPDLSSTAY 76
Query: 68 AVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGF 103
A+ L +LG + K +L + PDGGF
Sbjct: 77 ALAALELLGGEPDDEAVE--KAVDYLLSCQNPDGGF 110
Score = 40.8 bits (96), Expect = 8e-05
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 18/125 (14%)
Query: 138 REWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE 197
++L + Q +GG+ G + T AL L D+K L W ++Q N +
Sbjct: 1 VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETP--DVKKALAWLLSQQ-NPD 57
Query: 198 GGFQGRTNKLVDGCYSFWQG--GLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQ 255
GGF S L L +A + +D Y+L CQ
Sbjct: 58 GGFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVD------------YLL-SCQ 104
Query: 256 HFNGG 260
+ +GG
Sbjct: 105 NPDGG 109
Score = 29.6 bits (67), Expect = 0.57
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 16 CYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFG 53
+ +L LL V++L CQ+P+GGFG
Sbjct: 74 TAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFG 111
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase
repeat.
Length = 44
Score = 51.0 bits (123), Expect = 4e-09
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 34 DKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
DK +V++L CQ+P+GGFGG PG + TY A+ L +LG
Sbjct: 2 DKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44
Score = 45.6 bits (109), Expect = 4e-07
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL 174
++L +CQ +GGF G PG E+ YT+C AAL LL
Sbjct: 1 IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALL 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 84 INRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVA 123
I++ KL +L + PDGGF GGE D YCAL
Sbjct: 1 IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAAL 40
Score = 37.1 bits (87), Expect = 4e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 181 DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLI 223
D + L+ + + Q N +GGF GR D Y++ L+
Sbjct: 2 DKEKLVDYLLSCQ-NPDGGFGGRPGGESDTYYTYCALAALALL 43
>gnl|CDD|219510 pfam07678, A2M_comp, A-macroglobulin complement component. This
family includes the complement components region of the
alpha-2-macroglobulin family.
Length = 248
Score = 32.6 bits (75), Expect = 0.14
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 83 CINRPKLKQFLQRLKA----PDGGFHVHDGGEVDIRGVYCALCV-----------ALLTQ 127
P+ + L++LKA + + G ALL
Sbjct: 145 AGKSPQASELLEKLKALAQEEGNSRYWERDEKSKDSGKPLYWYSAPAAEVETTAYALLAY 204
Query: 128 VYSEDLF--NNTREWLTACQTYEGGFS 152
+ DL + WLT+ + GGFS
Sbjct: 205 LSLGDLTYADPIVRWLTSQRNSGGGFS 231
>gnl|CDD|224603 COG1689, COG1689, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 274
Score = 32.5 bits (74), Expect = 0.19
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 31 SSADKSCVVNFLSQCQSPNGGFGGGPGQ-DPHIAATYAAVNCLIILGTPEAYNCINRPKL 89
S K V +F C GGF P P+I T+ A+ L +LG CI
Sbjct: 180 SKGPKEEVRHFELCCGD-WGGFTEVPNSYPPYIEPTFYALRGLELLG---GKYCI--SDH 233
Query: 90 KQFLQRLKAPDGGF 103
+F++ L+ +GGF
Sbjct: 234 IRFIRSLQNQNGGF 247
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like.
Length = 109
Score = 30.0 bits (68), Expect = 0.48
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 27 DEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAV 69
L + K+ +L Q +GGFG G+ + ATY
Sbjct: 42 ARVLEAIKKAV--EWLLDQQQEDGGFGYDGGEYAYSTATYIVA 82
>gnl|CDD|239226 cd02896, complement_C3_C4_C5, Proteins similar to C3, C4 and C5 of
vertebrate complement. The vertebrate complement
system, comprised of a large number of distinct plasma
proteins, is an effector of both the acquired and innate
immune systems. The point of convergence of the
classical, alternative and lectin pathways of the
complement system is the proteolytic activation of C3.
C4 plays a key role in propagating the classical and
lectin pathways. C5 participates in the classical and
alternative pathways. The thioester bond located within
the structure of C3 and C4 is central to the function of
complement. C5 does not contain an active thioester
bond.
Length = 297
Score = 30.3 bits (69), Expect = 0.94
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 123 ALLTQVYSEDLFNNTRE---WLTACQTYEGGF 151
ALL + D WLT + Y GGF
Sbjct: 251 ALLALLKLGD-IEYANPIARWLTEQRNYGGGF 281
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 30.0 bits (68), Expect = 1.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 73 IILGTPEAYNCINRPKLKQFLQRLKA 98
I+L PEA N ++ P LK+ LQ LK
Sbjct: 19 IMLNRPEALNALDEPMLKELLQALKE 44
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases. This
family of enzymes catalyzes the cyclization of the
triterpenes squalene or 2-3-oxidosqualene to a variety
of products including hopene , lanosterol ,
cycloartenol, amyrin, lupeol and isomultiflorenol.
Length = 621
Score = 30.1 bits (68), Expect = 1.4
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 39 VNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKA 98
V FL Q+P+G + G + A Y V I TP R K+ ++L+ +
Sbjct: 6 VEFLLSLQAPDGYWWGELEGPLTLLAEY--VLLCHIADTPLPGY---REKIVRYLRHHQN 60
Query: 99 PDGGFHVHDGGEVDIRG---VYCAL 120
DGG+ +H GG+ + G Y AL
Sbjct: 61 EDGGWGLHIGGKSTVFGTVLAYVAL 85
>gnl|CDD|234496 TIGR04198, paramyx_RNAcap, mRNA capping enzyme, paramyxovirus
family. This model represents a common C-terminal
region shared by paramyxovirus-like RNA-dependent RNA
polymerases (see model pfam00946). Polymerase proteins
described by these two models are often called L protein
(large polymerase protein). Capping of mRNA requires RNA
triphosphatase and guanylyl transferase activities,
demonstrated for the rinderpest virus L protein and at
least partially localized to the region of this model.
Length = 893
Score = 29.8 bits (67), Expect = 1.9
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 6/63 (9%)
Query: 11 SRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVN 70
I S + LSSA + + + S P +
Sbjct: 745 GLVDSRVSILADFSKVKGLLSSAILTLLKELIRTLDSSKSLTPPYPLSILGK------LR 798
Query: 71 CLI 73
LI
Sbjct: 799 TLI 801
>gnl|CDD|225854 COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope
biogenesis, outer membrane].
Length = 342
Score = 28.9 bits (65), Expect = 2.7
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 89 LKQFLQRLKAPDGGFHVHDGGEVDIR 114
L Q P G G +DIR
Sbjct: 53 LPQQDGLYAIPQGNGTGAVGKALDIR 78
>gnl|CDD|219382 pfam07346, DUF1477, Protein of unknown function (DUF1477). This
family consists of several hypothetical
Nucleopolyhedrovirus proteins of around 100 resides in
length. The function of this family is unknown.
Length = 115
Score = 27.3 bits (61), Expect = 3.7
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 114 RGVYCALCVALLTQVYSEDLFNNTREWLTACQT 146
G++ LC++ +T N+ T
Sbjct: 36 HGLFYELCISFITSA----STGNSLALPTLKNL 64
>gnl|CDD|217657 pfam03648, Glyco_hydro_67N, Glycosyl hydrolase family 67
N-terminus. Alpha-glucuronidases, components of an
ensemble of enzymes central to the recycling of
photosynthetic biomass, remove the alpha-1,2 linked
4-O-methyl glucuronic acid from xylans. This family
represents the N-terminal region of alpha-glucuronidase.
The N-terminal domain forms a two-layer sandwich, each
layer being formed by a beta sheet of five strands. A
further two helices form part of the interface with the
central, catalytic, module (pfam07488).
Length = 122
Score = 27.7 bits (62), Expect = 3.7
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 51 GFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDG 101
G G G+ P +++ + I++GT E I L + L+ L +G
Sbjct: 43 GLKGMLGKTPQVSSEPPE-SSSILVGTLEESPLIASLALPEELKALG-EEG 91
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase.
Length = 404
Score = 28.5 bits (64), Expect = 3.9
Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 51/149 (34%)
Query: 97 KAPDGGFHVHDGGEV-DIRGVYCALCVALLTQVYSEDL----FNNTRE--------WLTA 143
K D +HVHD + ++G A + LT+ EDL F + R +LT
Sbjct: 165 KGGDVSWHVHDERSLLALQGPLAAPVLQHLTK---EDLSKMYFGDFRITDINGADCFLTR 221
Query: 144 CQTYEGGFSGYPGFE------------------AHGGYTFCGF---------AALCLLKS 176
G++G GFE + G G A LCL +
Sbjct: 222 T-----GYTGEDGFEISVPSEHAVDLAKALLEKSEGKVRLTGLGARDSLRLEAGLCLYGN 276
Query: 177 ---EHLCDIKALLRWTTNRQMNFEGGFQG 202
EH+ ++A L WT ++ EGGF G
Sbjct: 277 DLEEHITPVEAGLAWTIGKRRRAEGGFLG 305
>gnl|CDD|215666 pfam00030, Crystall, Beta/Gamma crystallin. The alignment
comprises two Greek key motifs since the similarity
between them is very low.
Length = 82
Score = 25.9 bits (58), Expect = 7.3
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 196 FEG-GFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFH 242
+E FQGR+ +L D C S + G + S+ L G W+ +
Sbjct: 5 YEEENFQGRSMELTDDCPSLQERGFNDRV-SSI-----KVLSGAWVLY 46
>gnl|CDD|239221 cd02891, A2M_like, Proteins similar to alpha2-macroglobulin (alpha
(2)-M). Alpha (2)-M is a major carrier protein in
serum. It is a broadly specific proteinase inhibitor.
The structural thioester of alpha (2)-M, is involved in
the immobilization and entrapment of proteases. This
group contains another broadly specific proteinase
inhibitor: pregnancy zone protein (PZP). PZP is a
trace protein in the plasma of non-pregnant females and
males which is elevated in pregnancy. Alpha (2)-M and PZ
bind to placental protein-14 and may modulate its
activity in T-cell growth and cytokine production
thereby protecting the allogeneic fetus from attack by
the maternal immune system. This group also contains C3,
C4 and C5 of vertebrate complement. The vertebrate
complement is an effector of both the acquired and
innate immune systems The point of convergence of the
classical, alternative and lectin pathways of the
complement system is the proteolytic activation of C3.
C4 plays a key role in propagating the classical and
lectin pathways. C5 participates in the classical and
alternative pathways. The thioester bond located within
the structure of C3 and C4 is central to the function of
complement. C5 does not contain an active thioester
bond.
Length = 282
Score = 27.4 bits (61), Expect = 9.3
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 119 ALCVALLTQVYSEDL--FNNTREWLTACQTYEGGFS 152
A ALL + DL +WL + GGF
Sbjct: 232 ATAYALLALLKLGDLEEAGPIAKWLAQQRNSGGGFL 267
>gnl|CDD|220634 pfam10220, DUF2146, Uncharacterized conserved protein (DUF2146).
This is a family of proteins conserved from plants to
humans. In Dictyostelium it is annotated as Mss11p but
this could not be confirmed. Mss11p is required for the
activation of pseudo-hyphal and invasive growth by
Ste12p in yeast.
Length = 890
Score = 27.5 bits (61), Expect = 9.9
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 200 FQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTC 234
Q +KL + C WQ G SL G C
Sbjct: 442 AQEALSKLQEQCNKMWQSGKQQCESPSLR--GHPC 474
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.142 0.482
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,953,452
Number of extensions: 1288196
Number of successful extensions: 1507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1406
Number of HSP's successfully gapped: 41
Length of query: 271
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 176
Effective length of database: 6,723,972
Effective search space: 1183419072
Effective search space used: 1183419072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.2 bits)