RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15672
(271 letters)
>2h6f_B Protein farnesyltransferase beta subunit; ftase,
farnesyltransferase, farnesyl transferase,
prenyltransferase, CAAX, RAS, lipid modification,
prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP:
a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B*
1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B*
2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B*
1d8e_B* ...
Length = 437
Score = 300 bits (768), Expect = e-100
Identities = 166/264 (62%), Positives = 191/264 (72%), Gaps = 1/264 (0%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP GGFGGGPGQ PH+A TY
Sbjct: 95 CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 154
Query: 67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
AAVN L I+GT EAY+ INR KL Q+L LK PDG F +H GGEVD+R YCA VA LT
Sbjct: 155 AAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 214
Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
+ + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+LL
Sbjct: 215 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLL 274
Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCL-DGHWLFHHRA 245
+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +A
Sbjct: 275 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 334
Query: 246 LQEYILICCQHFNGGLLDKPENMV 269
LQEYIL+CCQ GGLLDKP
Sbjct: 335 LQEYILMCCQCPAGGLLDKPGKSR 358
Score = 106 bits (266), Expect = 1e-26
Identities = 38/216 (17%), Positives = 76/216 (35%), Gaps = 19/216 (8%)
Query: 16 CYWICHSLSLLD--EPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLI 73
Y ++L ++ E ++ ++ +L + P+G F G + + + Y A +
Sbjct: 153 TYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVAS 212
Query: 74 ILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDL 133
+ +++ R + +GG G E +C L ++ +
Sbjct: 213 LTNIITP---DLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN 269
Query: 134 FNNTREWLTACQT-YEGGFSGYPGFEAHGGYTFCGFAALCLLK-------------SEHL 179
+ +W+T+ Q +EGGF G G Y+F L LL S +
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWM 329
Query: 180 CDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
+AL + GG + K D ++ +
Sbjct: 330 FHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCY 365
Score = 95.2 bits (236), Expect = 1e-22
Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 19/184 (10%)
Query: 14 WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLI 73
Y SL + ++ ++++CQ+ GG GG PG + H T+ + L+
Sbjct: 202 RSAYCAASVASLTNI-ITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV 260
Query: 74 ILGTPEAYNCINRPKLKQFL-QRLKAPDGGFHVHDGGEVDIRGVYCAL-CVALLTQVY-- 129
IL + +N L Q++ R +GGF VD + + LL +
Sbjct: 261 ILKRERS---LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHA 317
Query: 130 --------SEDLFN---NTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEH 178
S +F+ L CQ GG PG +T + L + +
Sbjct: 318 QGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFG 377
Query: 179 LCDI 182
+
Sbjct: 378 SGAM 381
Score = 37.5 bits (86), Expect = 0.004
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 13/98 (13%)
Query: 16 CYWICHSLSLLDEPLSSA------------DKSCVVNF-LSQCQSPNGGFGGGPGQDPHI 62
+W L LL L + + + + L CQ P GG PG+
Sbjct: 301 SFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF 360
Query: 63 AATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPD 100
T ++ L I + ++ L L+
Sbjct: 361 YHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTH 398
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B*
3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Length = 520
Score = 265 bits (677), Expect = 5e-86
Identities = 121/324 (37%), Positives = 152/324 (46%), Gaps = 61/324 (18%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPG--QDPHIAA 64
LDASR W+ +W HSL LL L K VV+ L SP GGFGGGP Q PH+
Sbjct: 83 SLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLP 142
Query: 65 TYAAVNCLIILGTPEAYN-----CINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA 119
TYA+V L I G + R + +F R K PDGGF V +GGEVD+RG YC
Sbjct: 143 TYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCL 202
Query: 120 LCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGY-----------------------PG 156
L VA L + + +L +N ++++ACQTYEGGF+
Sbjct: 203 LVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSM 262
Query: 157 FEAHGGYTFCGFAALCLLKSEHL------CDIKALLRWTTNRQMN--FEGGFQGRTNKLV 208
EAHGGYT C + LL S L D A LRWT +Q GGF+GRTNKLV
Sbjct: 263 AEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLV 322
Query: 209 DGCYSFWQGGLFPLIYRSLMKAGDTCL--------------------DGHWLFHHRALQE 248
DGCYS+W GG P+ + + + +F+ ALQE
Sbjct: 323 DGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQE 382
Query: 249 YILICCQHFN---GGLLDKPENMV 269
+ L+ Q GGL DKP
Sbjct: 383 FTLVAAQQDPGSTGGLRDKPGKRP 406
Score = 56.1 bits (134), Expect = 4e-09
Identities = 33/234 (14%), Positives = 58/234 (24%), Gaps = 66/234 (28%)
Query: 14 WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGG------------------- 54
Y + +LLD ++ V F+S CQ+ GGF
Sbjct: 197 RGTYCLLVVATLLDI-ITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSE 255
Query: 55 ----GPGQDPHIAATYAAVNCLIILG---TPEAYNCINRPKLKQFL---QRLKAPDGGFH 104
+ H T ++N +L P I+ ++ Q GGF
Sbjct: 256 PSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFR 315
Query: 105 ------------VHDGGEVDIRGVYCALCVALLTQVYS------------------EDLF 134
GG + + + +F
Sbjct: 316 GRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIF 375
Query: 135 NN--TREWLTACQTYE----GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDI 182
N +E+ + GG PG +T + L + + +
Sbjct: 376 NRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSP 429
Score = 26.8 bits (58), Expect = 8.5
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 34 DKSCVVNFLSQCQ----SPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKL 89
++ + F GG PG+ P T ++ L I +++
Sbjct: 376 NRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSPSTVSSN 435
Query: 90 KQFLQRLK 97
+ K
Sbjct: 436 RLKFDASK 443
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein
prenylation, metal-binding, prenyltransferase, zinc,
phosphoprotein; 1.80A {Rattus norvegicus} SCOP:
a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B*
3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B*
3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B*
Length = 331
Score = 241 bits (615), Expect = 6e-79
Identities = 71/263 (26%), Positives = 108/263 (41%), Gaps = 17/263 (6%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
+ R YW + L+ + +K ++ F+ CQ GG G DPH+ T
Sbjct: 41 MSEYLRMSGVYWGLTVMDLMGQL-HRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTL 99
Query: 67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
+AV L + + + IN K+ ++Q L+ DG F GE+D R +CA+ L
Sbjct: 100 SAVQILTLYD---SIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALL 156
Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
E++ +C ++GGF PG E+H G +C L + H + L
Sbjct: 157 GKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLG 216
Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRAL 246
W RQ+ GG GR KL D CYS+W + + L
Sbjct: 217 WWLCERQLPS-GGLNGRPEKLPDVCYSWWVLASLKI------------IGRLHWIDREKL 263
Query: 247 QEYILICCQHFNGGLLDKPENMV 269
+ +IL C GG D+P +MV
Sbjct: 264 RSFILACQDEETGGFADRPGDMV 286
Score = 121 bits (304), Expect = 9e-33
Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 4/211 (1%)
Query: 5 GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAA 64
+ L+L D + + VV ++ Q +G F G +
Sbjct: 87 ASIGHDPHLLYTLSAVQILTLYDS-IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRF 145
Query: 65 TYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVAL 124
++ AV L +LG +A IN K +F+ DGGF G E +YC
Sbjct: 146 SFCAVATLALLGKLDA---INVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLA 202
Query: 125 LTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKA 184
+T + + WL Q GG +G P Y++ A+L ++ H D +
Sbjct: 203 ITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREK 262
Query: 185 LLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
L + Q GGF R +VD ++ +
Sbjct: 263 LRSFILACQDEETGGFADRPGDMVDPFHTLF 293
Score = 99.8 bits (248), Expect = 1e-24
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 5/174 (2%)
Query: 14 WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLI 73
+ +L+LL + L + + + F+ C + +GGFG PG + H Y L
Sbjct: 144 RFSFCAVATLALLGK-LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLA 202
Query: 74 ILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDL 133
I +N L +L + P GG + D+ + L +
Sbjct: 203 ITSQLHQ---VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWID 259
Query: 134 FNNTREWLTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
R ++ ACQ E GGF+ PG +T G A L LL E + + +
Sbjct: 260 REKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVF 313
Score = 70.1 bits (171), Expect = 4e-14
Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 14/188 (7%)
Query: 78 PEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNT 137
+A + + K ++ + + + + GVY L V L
Sbjct: 12 SDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEI 71
Query: 138 REWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE 197
++ +CQ GG S G + H YT L L S H+ ++ ++ + + Q +
Sbjct: 72 LVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQ-KED 130
Query: 198 GGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHF 257
G F G +D +SF L L + E++ + C +F
Sbjct: 131 GSFAGDIWGEIDTRFSFCAVATLAL------------LGKLDAINVEKAIEFV-LSCMNF 177
Query: 258 NGGLLDKP 265
+GG +P
Sbjct: 178 DGGFGCRP 185
>1n4q_B Geranyltransferase type-I beta subunit; protein
geranylgeranyltransferase type-I, ggtase; HET: MGM GER;
2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B*
1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B*
1tnz_B*
Length = 377
Score = 222 bits (567), Expect = 3e-71
Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 49/294 (16%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSP------------------ 48
L+ SR I ++ L +LD +K ++ ++ Q
Sbjct: 42 SLETSRLTIAFFALSGLDMLDSL-DVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSY 100
Query: 49 --------NGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPD 100
P HIA TY ++CLIILG + + +++ L+ L+ D
Sbjct: 101 LGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG--DDLSRVDKEACLAGLRALQLED 158
Query: 101 GGFH-VHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEA 159
G F V +G E D+R VYCA C+ + +S ++ +Y+ G + G E+
Sbjct: 159 GSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLES 218
Query: 160 HGGYTFCGFAALCLLKSEHLC----DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
HGG TFCG A+LCL+ ++ + RW RQ + G+ GR NK VD CYSFW
Sbjct: 219 HGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ---QNGYHGRPNKPVDTCYSFW 275
Query: 216 QGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMV 269
G L L + + YIL GG P++
Sbjct: 276 VGATLKL------------LKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHP 317
Score = 116 bits (291), Expect = 1e-30
Identities = 45/216 (20%), Positives = 77/216 (35%), Gaps = 10/216 (4%)
Query: 5 GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGP-GQDPHIA 63
+ D+ + Y L +L + LS DK + L Q +G F P G + +
Sbjct: 114 AHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMR 173
Query: 64 ATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVA 123
Y A +L ++ K +++R + D G G E +C +
Sbjct: 174 FVYCASCICYMLNNWSG---MDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASL 230
Query: 124 LLTQ----VYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHL 179
L V+SE N + W + G+ G P Y+F A L LLK
Sbjct: 231 CLMGKLEEVFSEKELNRIKRWC--IMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQY 288
Query: 180 CDIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
+ + + + Q GGF + D ++++
Sbjct: 289 TNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYF 324
Score = 91.4 bits (226), Expect = 2e-21
Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 5/173 (2%)
Query: 16 CYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIIL 75
Y +L+ S D ++++ + S + G G G + H +T+ + L ++
Sbjct: 175 VYCASCICYMLNN-WSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLM 233
Query: 76 GT-PEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL-CVALLTQVYSEDL 133
G E ++ ++K++ G+H VD + + LL +
Sbjct: 234 GKLEEVFSEKELNRIKRWCIM--RQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNF 291
Query: 134 FNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
N L+ GGF+ +P + + G L L++ +C + L
Sbjct: 292 EKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPAL 344
Score = 37.8 bits (87), Expect = 0.003
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 10/95 (10%)
Query: 16 CYWICHSLSLLDEPLSSADKSCVVNFLSQC-QSPNGGFGGGPGQDPHIAATYAAVNCLII 74
+W+ +L LL + N++ GGF P P Y + L +
Sbjct: 273 SFWVGATLKLLKI-FQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSL 331
Query: 75 LGTPE------AYNCINRP--KLKQFLQRLKAPDG 101
+ A N R +L+ Q K D
Sbjct: 332 MEESGICKVHPALNVSTRTSERLRDLHQSWKTKDS 366
>3dra_B Geranylgeranyltransferase type I beta subunit;
geranylgeranyltrasferase, ggtase, ggtase-I, PGGT,
prenyltransferase, farnesyltransferase; HET: B3P GRG;
1.80A {Candida albicans}
Length = 390
Score = 210 bits (535), Expect = 3e-66
Identities = 73/332 (21%), Positives = 118/332 (35%), Gaps = 81/332 (24%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSAD-------------KSCVVNFLSQCQSPNGGFG 53
D+++ I Y+ H L L+ + + +S +
Sbjct: 26 SEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQKT 85
Query: 54 GGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGF---------- 103
P++++T A+ L+IL + + INR K+ FL + + DG
Sbjct: 86 NQKYDCPNLSSTLFALYNLLILKS-PYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYY 144
Query: 104 -----HVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTR-------------EWLTACQ 145
GE D+R Y AL + L + + NN +++
Sbjct: 145 NEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRI 204
Query: 146 TYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALLRWTTNRQMNFE-------- 197
GGFS E+H G+TFC A+L LL L +K+ W +RQ+++
Sbjct: 205 NINGGFSSTIMDESHLGFTFCAIASLKLLNY-PLEKLKSTKEWLIHRQVDYPENLYPKDG 263
Query: 198 -------------------GGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGH 238
GGF GR NKL D CYS+W G I + +K
Sbjct: 264 NGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIK--------- 314
Query: 239 WLFHHRALQEYILICCQH-FNGGLLDKPENMV 269
L ++Y+L Q+ GG P++
Sbjct: 315 -LVDLNKAEDYLLNKTQNQLFGGFGRDPDSTP 345
Score = 72.2 bits (176), Expect = 1e-14
Identities = 30/183 (16%), Positives = 50/183 (27%), Gaps = 28/183 (15%)
Query: 24 SLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTP----- 78
+ D + D + F+ + NGGF + H+ T+ A+ L +L P
Sbjct: 182 NREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPLEKLK 241
Query: 79 -------------------EAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCA 119
+ N + GGF+ + D +
Sbjct: 242 STKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWC 301
Query: 120 LCVALLTQVYSEDLFN---NTREWLTACQTYE-GGFSGYPGFEAHGGYTFCGFAALCLLK 175
V L + L Q GGF P +++ A+L L
Sbjct: 302 TGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWN 361
Query: 176 SEH 178
E
Sbjct: 362 HEK 364
Score = 28.6 bits (63), Expect = 2.2
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 16 CYWICHSLSLLDEPLSS-ADKSCVVNFLSQCQ--SPNGGFGGGPGQDPHIAATYAAVNCL 72
+W SL +D D + ++L GGFG P P +Y A+ L
Sbjct: 298 SWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASL 357
Query: 73 IILGTPE 79
+ +
Sbjct: 358 SLWNHEK 364
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic
membrane protein, QW-sequence, repeat; HET: C8E; 2.00A
{Alicyclobacillus acidocaldarius} SCOP: a.102.4.2
a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A*
1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A*
1o79_A* 1sqc_A* 1o6r_A*
Length = 631
Score = 43.7 bits (102), Expect = 4e-05
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 23/167 (13%)
Query: 21 HSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFG-------------------GGPGQDPH 61
++L L DE + ++ QS NGG+G G P
Sbjct: 386 NTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPS 445
Query: 62 IAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALC 121
T + C G +A+ I R ++L+R + PDG + G + G +
Sbjct: 446 EDVTAHVLECFGSFGYDDAWKVIRR--AVEYLKREQKPDGSWF-GRWGVNYLYGTGAVVS 502
Query: 122 V-ALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCG 167
+ E +W+ Q +GG+ Y G
Sbjct: 503 ALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKG 549
Score = 34.8 bits (79), Expect = 0.027
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 39 VNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKA 98
V +L CQ G + G + + A Y V IL + K++++L +
Sbjct: 19 VEYLLSCQKDEGYWWGPLLSNVTMEAEY--VLLCHILDRVDRD---RMEKIRRYLLHEQR 73
Query: 99 PDGGFHVHDGGEVDIRGVYCALCVALLTQVYSED--LFNNTREWLTACQTYEGGFSGYPG 156
DG + ++ GG D+ A VAL S D ++ + +GG
Sbjct: 74 EDGTWALYPGGPPDLDTTIEAY-VALKYIGMSRDEEPMQKALRFIQS----QGGIESSRV 128
Query: 157 F 157
F
Sbjct: 129 F 129
Score = 33.7 bits (76), Expect = 0.057
Identities = 30/181 (16%), Positives = 52/181 (28%), Gaps = 20/181 (11%)
Query: 5 GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAA 64
G D + + + V +L + Q P+G + G G ++
Sbjct: 438 GEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYG 496
Query: 65 TYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVY----CAL 120
T A V+ L +G K ++++ + PDGG+ D
Sbjct: 497 TGAVVSALKAVGID--TREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPS 554
Query: 121 CVALLTQVYSEDLFNNTR------EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLL 174
A + ++L Q +GG+ YT GF L
Sbjct: 555 QTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGW-------DEPYYTGTGFPGDFYL 607
Query: 175 K 175
Sbjct: 608 G 608
Score = 27.1 bits (59), Expect = 8.1
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 16 CYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIIL 75
+CH L +D + +L Q +G + PG P + T A L +
Sbjct: 46 YVLLCHILDRVDRDRMEK----IRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYI 101
Query: 76 GTPEAYNCINR 86
G + +
Sbjct: 102 GMSRDEEPMQK 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 36/197 (18%), Positives = 55/197 (27%), Gaps = 78/197 (39%)
Query: 58 QDPHIAATYAAVN---CLIILGTPEA-YNCINRPKLKQFLQRLKAPDGG----------- 102
+ + VN L++ G P++ Y L L++ KAP G
Sbjct: 362 AGKQVEI--SLVNGAKNLVVSGPPQSLYG------LNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 103 -------------FHVHDGGEVDIRGVYCALCVALLTQVYS---EDLFNNTREWLTACQT 146
FH H LL +DL N + A
Sbjct: 414 LKFSNRFLPVASPFHSH-----------------LLVPASDLINKDLVKNNVSF-NAKDI 455
Query: 147 YEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCD--IKALLRWTTNRQMN------F-E 197
P ++ G + E + D I+ ++W T Q F
Sbjct: 456 ------QIPVYDTFDGSDLRVLSGSIS---ERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 198 GGFQG---RTNKLVDGC 211
GG G T++ DG
Sbjct: 507 GGASGLGVLTHRNKDGT 523
Score = 37.3 bits (86), Expect = 0.005
Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 55/163 (33%)
Query: 18 WICHSLSLLDEP-LSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
W+ + + D+ L S SC + + Q A Y +LG
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQL------------------AHYVVT--AKLLG 257
Query: 77 -TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYS-EDLF 134
TP + LK G +G+ A+ +A + S E F
Sbjct: 258 FTPG-----------ELRSYLK----------GATGHSQGLVTAVAIA---ETDSWESFF 293
Query: 135 NNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSE 177
+ R+ +T F + G + Y L S
Sbjct: 294 VSVRKAITVL------F--FIGVRCYEAYPNTSLPPSILEDSL 328
Score = 28.1 bits (62), Expect = 3.9
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 105 VHDGGEVD--IRGVYCALCVALLT--QVYSEDLFNNTREWLTACQTYEGGFSGYP-GFEA 159
+H GGE IR Y A+ + ++ +E +F E T+ T+ G +
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY-TFRS-----EKGLLS 1727
Query: 160 HGGYT----F-CGFAALCLLKSEHLCDIKALL 186
+T AA LKS+ L A
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATF 1759
Score = 26.9 bits (59), Expect = 8.1
Identities = 27/119 (22%), Positives = 34/119 (28%), Gaps = 49/119 (41%)
Query: 52 FGGGPGQDPHIAATYAAVNCLIIL-GTPEAYN------------CINRPK----LKQFLQ 94
FGG G+ I Y+A+ I+ G + K QF Q
Sbjct: 1676 FGGEKGK--RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 95 ------------RLKAPDGGFHVHD---G---GEVDIRGVYCAL-CVALLTQVYS-EDL 133
LK+ G G GE Y AL +A V S E L
Sbjct: 1734 PALTLMEKAAFEDLKS-KGLIPADATFAGHSLGE------YAALASLA---DVMSIESL 1782
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein,
transferase; NMR {Sendai virus} SCOP: a.8.5.1
Length = 53
Score = 29.8 bits (66), Expect = 0.13
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 21 HSLSLLDE--PLSSADKSCVVNFLSQCQS 47
HSL L+ E PLS A+K+ V LS+C++
Sbjct: 5 HSLRLVIESSPLSRAEKAAYVKSLSKCKT 33
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.16
Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 41/159 (25%)
Query: 9 DASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGP----GQDPH-IA 63
S +W LL + + V F+ + N F P + P +
Sbjct: 60 AVSGTLRLFWT-----LLSKQ-----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 64 ATY-AAVNCLIILGTPEA---YNCINRP----KLKQFLQRLKAPDGGFHVH-DGGEVDIR 114
Y + L + YN ++R KL+Q L L+ P + G
Sbjct: 110 RMYIEQRDRL--YNDNQVFAKYN-VSRLQPYLKLRQALLELR-PAKNVLIDGVLG----- 160
Query: 115 GVYC---ALCVALLTQVYSEDLFNNTREWLTA--CQTYE 148
+ + + + + WL C + E
Sbjct: 161 ---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport
protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A*
2v3n_A* 2v3p_A* 2bb5_A*
Length = 414
Score = 30.2 bits (67), Expect = 0.71
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 38 VVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLK 97
V + + Q+P G FG ++ +T A+ L+ P K K LQ
Sbjct: 211 VQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-S 262
Query: 98 APDGGFH 104
F
Sbjct: 263 LQHKTFQ 269
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 30.4 bits (67), Expect = 0.82
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 89 LKQFLQRL---KAPDGGFHVHDGGEVDIR-GVYCALCVALLTQVY---SEDLFNNTREWL 141
L+Q Q + DG F + + + + + + + +WL
Sbjct: 874 LRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWL 933
Query: 142 TACQTYEGGF 151
+ Q + G F
Sbjct: 934 ASKQHFSGRF 943
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain,
hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis}
SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Length = 1020
Score = 29.8 bits (66), Expect = 1.1
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 8/68 (11%)
Query: 155 PGFEAHGGYTFC-----GFAALCLLKSEHLCDIKALLRWTTNRQMNFEGGFQGRTNKLVD 209
GY + LL + + W Q +G F + VD
Sbjct: 318 SAETHREGYHAVWARDMYQSVTALLAAGDEEAAARGVEWLFTYQQQPDGHFPQTSR--VD 375
Query: 210 GCYSFWQG 217
G G
Sbjct: 376 G-TIGQNG 382
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane
protein, B-octyl-glucoside, isomerase, steroid
biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP:
a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Length = 732
Score = 29.8 bits (66), Expect = 1.1
Identities = 32/243 (13%), Positives = 59/243 (24%), Gaps = 56/243 (23%)
Query: 10 ASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGG------------------ 51
A + + E + V L ++P+GG
Sbjct: 458 AEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNP 517
Query: 52 --FGGGPGQDPHIA-ATYAAVNCLIILG-------TPEAYNCINRPKLKQFLQRLKAPDG 101
G D T A + L E + + +F +R + DG
Sbjct: 518 SEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQ--GLEFCRRQQRADG 575
Query: 102 GFHVHDGGEVDIRGVYCALCVALLT--QVYSEDLFN----NTREWLTACQTYEGGFSGYP 155
+ G G + L A Q Y + ++L + Q +GG+
Sbjct: 576 SWE-GSWGVCFTYGTWFGLE-AFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDF 633
Query: 156 GFEAHGGYTFCGF-----AALCLLKSEHLCD-----IKALLRWTTNRQMN--------FE 197
Y ++ + + +R +Q+
Sbjct: 634 ESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIA 693
Query: 198 GGF 200
G F
Sbjct: 694 GVF 696
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.2
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 6/17 (35%)
Query: 90 KQFLQRLK------APD 100
KQ L++L+ A D
Sbjct: 19 KQALKKLQASLKLYADD 35
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 28.9 bits (65), Expect = 1.9
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 98 APDGGFHVHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTRE 139
G E+ R ++ LT+ + + + E
Sbjct: 315 KKAKGGRFFLYRELKSRKIHG--IKPGLTRYFKLSTYGLSDE 354
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 27.9 bits (63), Expect = 4.0
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 74 ILGTPEAYNCINRPKLKQFLQRLKAPD-------GGFH 104
ILGT E N N L+ ++ R D G H
Sbjct: 156 ILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH 193
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 27.8 bits (60), Expect = 4.4
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 9/52 (17%)
Query: 123 ALLTQVYSEDLFNNTR--EWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALC 172
ALL + + WLT Y + T F AL
Sbjct: 1217 ALLALLKMKKFDQTGPIVRWLTDQNFYGETYGQTQA-------TVMAFQALA 1261
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 27.6 bits (62), Expect = 4.5
Identities = 2/22 (9%), Positives = 8/22 (36%)
Query: 74 ILGTPEAYNCINRPKLKQFLQR 95
++ I++ L + +
Sbjct: 159 LICPRGLIPSISKYYLLDYRNK 180
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa,
nitroreductase, flavodoxin, oxidoreductase; HET: FMN
NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A*
3keg_A*
Length = 212
Score = 27.3 bits (60), Expect = 4.9
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 70 NCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVY 129
L + +P +R + FL + H V R V + + +T+ +
Sbjct: 3 RILAVHASPRGERSQSRRLAEVFLAAYRE------AHPQARVARREVG-RVPLPAVTEAF 55
Query: 130 SEDLFNNTREWLTACQTYE 148
F+ E + +
Sbjct: 56 VAAAFHPQPEQRSLAMQAD 74
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense}
SCOP: a.102.5.1
Length = 408
Score = 27.5 bits (60), Expect = 5.4
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 39 VNFLSQCQSPNGGFGG--GPGQDPHIAATY---AAVNCLIIL 75
+ +L Q PNGG+ H A TY A V+ +L
Sbjct: 181 IEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELL 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.142 0.482
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,430,473
Number of extensions: 260055
Number of successful extensions: 838
Number of sequences better than 10.0: 1
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 44
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)