RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15672
(271 letters)
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 308 bits (790), Expect = e-105
Identities = 166/264 (62%), Positives = 191/264 (72%), Gaps = 1/264 (0%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
CLDASR W+CYWI HSL LLDEP+ + V FL CQSP GGFGGGPGQ PH+A TY
Sbjct: 75 CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTY 134
Query: 67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
AAVN L I+GT EAY+ INR KL Q+L LK PDG F +H GGEVD+R YCA VA LT
Sbjct: 135 AAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLT 194
Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
+ + DLF T EW+ CQ +EGG G PG EAHGGYTFCG AAL +LK E ++K+LL
Sbjct: 195 NIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLL 254
Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLD-GHWLFHHRA 245
+W T+RQM FEGGFQGR NKLVDGCYSFWQ GL PL++R+L GD L HW+FH +A
Sbjct: 255 QWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA 314
Query: 246 LQEYILICCQHFNGGLLDKPENMV 269
LQEYIL+CCQ GGLLDKP
Sbjct: 315 LQEYILMCCQCPAGGLLDKPGKSR 338
Score = 33.5 bits (76), Expect = 0.023
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 15/101 (14%)
Query: 15 ICY--WICHSLSLLDEPLSSADKSCVVNF-------------LSQCQSPNGGFGGGPGQD 59
CY W L LL L + + L CQ P GG PG+
Sbjct: 278 GCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKS 337
Query: 60 PHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPD 100
T ++ L I + ++ L L+
Sbjct: 338 RDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTH 378
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 346
Score = 232 bits (594), Expect = 5e-76
Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 49/294 (16%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSP------------------ 48
L+ SR I ++ L +LD L +K ++ ++ Q
Sbjct: 25 SLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSY 83
Query: 49 --------NGGFGGGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPD 100
P HIA TY ++CLIILG + + +++ L+ L+ D
Sbjct: 84 LGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG--DDLSRVDKEACLAGLRALQLED 141
Query: 101 GGFH-VHDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEA 159
G F V +G E D+R VYCA C+ + +S ++ +Y+ G + G E+
Sbjct: 142 GSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLES 201
Query: 160 HGGYTFCGFAALCLLKSEHLC----DIKALLRWTTNRQMNFEGGFQGRTNKLVDGCYSFW 215
HGG TFCG A+LCL+ ++ + RW R + G+ GR NK VD CYSFW
Sbjct: 202 HGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMR---QQNGYHGRPNKPVDTCYSFW 258
Query: 216 QGGLFPLIYRSLMKAGDTCLDGHWLFHHRALQEYILICCQHFNGGLLDKPENMV 269
G L L + + YIL GG P++
Sbjct: 259 VGATLKL------------LKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHP 300
Score = 81.6 bits (201), Expect = 1e-18
Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 9/177 (5%)
Query: 14 WICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLI 73
Y +L+ S D ++++ + S + G G G + H +T+ + L
Sbjct: 156 RFVYCASCICYMLNN-WSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLC 214
Query: 74 ILGTP-EAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLTQVYSED 132
++G E ++ ++K++ G+H VD Y A L +
Sbjct: 215 LMGKLEEVFSEKELNRIKRWCIMR--QQNGYHGRPNKPVDTC--YSFWVGATLKLLKIFQ 270
Query: 133 LFN---NTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
N N L+ GGF+ +P + + G L L++ +C + L
Sbjct: 271 YTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPAL 327
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 231 bits (590), Expect = 1e-75
Identities = 72/263 (27%), Positives = 110/263 (41%), Gaps = 17/263 (6%)
Query: 7 CLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATY 66
+ R YW + L+ + L +K ++ F+ CQ GG G DPH+ T
Sbjct: 35 MSEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTL 93
Query: 67 AAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVALLT 126
+AV L + ++ + IN K+ ++Q L+ DG F GE+D R +CA+ L
Sbjct: 94 SAVQILTLY---DSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALL 150
Query: 127 QVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKALL 186
E++ +C ++GGF PG E+H G +C L + H + L
Sbjct: 151 GKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLG 210
Query: 187 RWTTNRQMNFEGGFQGRTNKLVDGCYSFWQGGLFPLIYRSLMKAGDTCLDGHWLFHHRAL 246
W RQ+ GG GR KL D CYS+W + + L
Sbjct: 211 WWLCERQLP-SGGLNGRPEKLPDVCYSWWVLASLKI------------IGRLHWIDREKL 257
Query: 247 QEYILICCQHFNGGLLDKPENMV 269
+ +IL C GG D+P +MV
Sbjct: 258 RSFILACQDEETGGFADRPGDMV 280
Score = 106 bits (265), Expect = 1e-27
Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 4/210 (1%)
Query: 5 GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAA 64
+ L+L D + VV ++ Q +G F G +
Sbjct: 81 ASIGHDPHLLYTLSAVQILTLYDSI-HVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRF 139
Query: 65 TYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCALCVAL 124
++ AV L +LG +A IN K +F+ DGGF G E +YC
Sbjct: 140 SFCAVATLALLGKLDA---INVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLA 196
Query: 125 LTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDIKA 184
+T + + WL Q GG +G P Y++ A+L ++ H D +
Sbjct: 197 ITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREK 256
Query: 185 LLRWTTNRQMNFEGGFQGRTNKLVDGCYSF 214
L + Q GGF R +VD ++
Sbjct: 257 LRSFILACQDEETGGFADRPGDMVDPFHTL 286
Score = 88.5 bits (219), Expect = 5e-21
Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 5/171 (2%)
Query: 13 AWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCL 72
+ +L+LL + L + + + F+ C + +GGFG PG + H Y L
Sbjct: 137 TRFSFCAVATLALLGK-LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFL 195
Query: 73 IILGTPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVDIRGVYCAL-CVALLTQVYSE 131
I + +N L +L + P GG + D+ + L + ++ +++
Sbjct: 196 AITSQL---HQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWI 252
Query: 132 DLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTFCGFAALCLLKSEHLCDI 182
D L GGF+ PG +T G A L LL E + +
Sbjct: 253 DREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPV 303
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase
{Alicyclobacillus acidocaldarius [TaxId: 405212]}
Length = 352
Score = 42.1 bits (98), Expect = 4e-05
Identities = 37/225 (16%), Positives = 67/225 (29%), Gaps = 33/225 (14%)
Query: 5 GNCLDASRAWICYWICHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFG----------- 53
A + + + L L DE + ++ QS NGG+G
Sbjct: 93 YYPDVCDTAVVVWALNT-LRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLP 151
Query: 54 --------GGPGQDPHIAATYAAVNCLIILGTPEAYNCINRPKLKQFLQRLKAPDGGFHV 105
G P T + C G +A+ I R ++L+R + PDG +
Sbjct: 152 NHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAV--EYLKREQKPDGSWFG 209
Query: 106 HDGGEVDIRGVYCALCVALLTQVYSEDLFNNTREWLTACQTYEGGFSGYPGFEAHGGYTF 165
G + + E +W+ Q +GG+ Y
Sbjct: 210 RWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAG 269
Query: 166 CG--------FAALCLLKSEHLCD--IKALLRWTTNRQMNFEGGF 200
G +A + L+ + +++ Q +GG+
Sbjct: 270 KGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP-DGGW 313
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 279
Score = 36.8 bits (85), Expect = 0.002
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 23 LSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILG 76
+ PL + + +V +L Q P+GG+G + T L ILG
Sbjct: 13 CHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILG 66
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase
{Alicyclobacillus acidocaldarius [TaxId: 405212]}
Length = 271
Score = 32.3 bits (73), Expect = 0.043
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 20 CHSLSLLDEPLSSADKSCVVNFLSQCQSPNGGFGGGPGQDPHIAATYAAVNCLIILGTPE 79
CH L +D + +L Q +G + PG P + T A L +G
Sbjct: 14 CHILDRVDRDRMEK----IRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSR 69
Query: 80 AYNCINR 86
+ +
Sbjct: 70 DEEPMQK 76
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus
[TaxId: 11191]}
Length = 53
Score = 28.5 bits (63), Expect = 0.12
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 21 HSLSLLDE--PLSSADKSCVVNFLSQCQS 47
HSL L+ E PLS A+K+ V LS+C++
Sbjct: 5 HSLRLVIESSPLSRAEKAAYVKSLSKCKT 33
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 448
Score = 27.3 bits (60), Expect = 2.1
Identities = 36/231 (15%), Positives = 65/231 (28%), Gaps = 54/231 (23%)
Query: 21 HSLSLLDEPLSSADKSCVVNFLSQCQSPNGG---------------------FGGGPGQD 59
+ E + V L ++P+GG FG
Sbjct: 185 EKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDY 244
Query: 60 PHIAATYAAVNCLIILG-------TPEAYNCINRPKLKQFLQRLKAPDGGFHVHDGGEVD 112
++ T A + L E + + +F +R + DG + G
Sbjct: 245 TYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQG--LEFCRRQQRADGSWEGSWGVCFT 302
Query: 113 IRGVYCALCVALLTQVYSEDLFNNT----REWLTACQTYEGGFSGYPGFEAHGGYTFCG- 167
+ A + Q Y + ++L + Q +GG+ Y
Sbjct: 303 YGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQ 362
Query: 168 -------FAALCLLKSEHLCDIKAL---LRWTTNRQM--------NFEGGF 200
+A + L+ H DI+A +R +Q+ N G F
Sbjct: 363 SQIHNTCWAMMGLMAVRH-PDIEAQERGVRCLLEKQLPNGDWPQENIAGVF 412
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy
grass (Phleum pratense) [TaxId: 15957]}
Length = 95
Score = 25.5 bits (56), Expect = 3.5
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 2 SRVGNCLDASRAWICYWICHSLSLLDEPLS 31
++ +W W + L P +
Sbjct: 37 KGKDKWIELKESWGAIWRIDTPDKLTGPFT 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.142 0.482
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,121,432
Number of extensions: 53079
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 19
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.2 bits)