RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15673
(484 letters)
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 489 bits (1262), Expect = e-171
Identities = 166/269 (61%), Positives = 212/269 (78%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
+ V+ AR+ F SGK++P EFR +QL+ L+R+ EEN+ ++ ALA DLRK K EAVL EI
Sbjct: 2 EAVRRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDLRKPKFEAVLSEIL 61
Query: 66 FLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPA 125
+ N+++ +++L +WM PE K++A +LD VYIY +P GV LIIGAWNYPLQL+L+P
Sbjct: 62 LVKNEIKYAISNLPEWMKPEPVKKNLATLLDDVYIYKEPLGVVLIIGAWNYPLQLTLVPL 121
Query: 126 AGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIF 185
GAIAAGN V++KPSEV+PA+AK++AEL+PKYLD + + VVLGGVEETTELLK RFDYIF
Sbjct: 122 VGAIAAGNCVVIKPSEVSPATAKLLAELIPKYLDKECYPVVLGGVEETTELLKQRFDYIF 181
Query: 186 YTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCI 245
YTGSTSVGKIV QAA +HLTPVTLELGGKSP Y+D S +I++A RR WGK INAGQTCI
Sbjct: 182 YTGSTSVGKIVMQAAAKHLTPVTLELGGKSPCYVDKSCDIDVAARRIAWGKFINAGQTCI 241
Query: 246 APDYILCSRQVQAQILNQAKAVLDSWYTE 274
APDY+LC+ +VQ + + K L +Y E
Sbjct: 242 APDYVLCTPEVQEKFVEALKKTLKEFYGE 270
Score = 156 bits (396), Expect = 2e-42
Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 374
P Y+D S +I++A RR WGK INAGQTCIAPDY+LC+ +VQ + + K L +Y E
Sbjct: 212 PCYVDKSCDIDVAARRIAWGKFINAGQTCIAPDYVLCTPEVQEKFVEALKKTLKEFYGED 271
Query: 375 VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRPLYI 418
+ S Y RI++D+HFQRLK L+ S G +A+GG D +R YI
Sbjct: 272 PKESPDYGRIINDRHFQRLKKLL-SGGKVAIGGQTDEKER--YI 312
Score = 56.1 bits (136), Expect = 2e-08
Identities = 20/34 (58%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Query: 284 AYHGKYSFNTFTHRKSCLVKDYNPVLEALSAPLY 317
AYHGKYSF+TF+H++SCLVK N +E L++ Y
Sbjct: 408 AYHGKYSFDTFSHKRSCLVKSLN--MEKLNSLRY 439
Score = 54.5 bits (132), Expect = 6e-08
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 402 TIALGGDMDASDRPLYIDSSVNIELAVRRFLWGKCINAGQ 441
T+ LGG P Y+D S +I++A RR WGK INAGQ
Sbjct: 204 TLELGGK-----SPCYVDKSCDIDVAARRIAWGKFINAGQ 238
Score = 52.2 bits (126), Expect = 3e-07
Identities = 18/30 (60%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
Query: 453 YHGKYSFVTFTHRKSCLVKDYNPVLEALSA 482
YHGKYSF TF+H++SCLVK N +E L++
Sbjct: 409 YHGKYSFDTFSHKRSCLVKSLN--MEKLNS 436
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 411 bits (1058), Expect = e-141
Identities = 135/270 (50%), Positives = 185/270 (68%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
+LV R+TF +GK++ E+R+ QL+ L R+ EN++++A AL ADL K EA L EI
Sbjct: 2 ELVARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAALYADLGKPPAEAYLTEIA 61
Query: 66 FLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPA 125
+ ++ + L HLK+WM P + + Y+ P+P GV LIIG WNYPLQL+L P
Sbjct: 62 VVLGEIDHALKHLKKWMKPRRVSVPLLLQPAKAYVIPEPLGVVLIIGPWNYPLQLALAPL 121
Query: 126 AGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIF 185
GAIAAGN V+LKPSE+APA++ ++A+L+PKY D + VV GGVE T LL FD+IF
Sbjct: 122 IGAIAAGNTVVLKPSELAPATSALLAKLIPKYFDPEAVAVVEGGVEVATALLAEPFDHIF 181
Query: 186 YTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCI 245
+TGS +VGKIV +AA +HLTPVTLELGGKSP +D N+E+A RR WGK +NAGQTCI
Sbjct: 182 FTGSPAVGKIVMEAAAKHLTPVTLELGGKSPCIVDKDANLEVAARRIAWGKFLNAGQTCI 241
Query: 246 APDYILCSRQVQAQILNQAKAVLDSWYTEQ 275
APDY+L ++ +++ + K + +Y E
Sbjct: 242 APDYVLVHESIKDELIEELKKAIKEFYGED 271
Score = 126 bits (318), Expect = 1e-31
Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 374
P +D N+E+A RR WGK +NAGQTCIAPDY+L ++ +++ + K + +Y E
Sbjct: 212 PCIVDKDANLEVAARRIAWGKFLNAGQTCIAPDYVLVHESIKDELIEELKKAIKEFYGED 271
Query: 375 VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRPLYI 418
+ S Y RI++++HF RL SL+ G + +GG +D +R YI
Sbjct: 272 PKESPDYGRIINERHFDRLASLL-DDGKVVIGGQVDKEER--YI 312
Score = 47.5 bits (114), Expect = 9e-06
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
P +D N+E+A RR WGK +NAGQ
Sbjct: 212 PCIVDKDANLEVAARRIAWGKFLNAGQ 238
Score = 42.1 bits (100), Expect = 4e-04
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 284 AYHGKYSFNTFTHRKSCLV 302
AYHGK F+TF+H KS L
Sbjct: 408 AYHGKAGFDTFSHLKSVLK 426
Score = 38.7 bits (91), Expect = 0.006
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 453 YHGKYSFVTFTHRKSCLV 470
YHGK F TF+H KS L
Sbjct: 409 YHGKAGFDTFSHLKSVLK 426
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 363 bits (934), Expect = e-122
Identities = 132/267 (49%), Positives = 177/267 (66%), Gaps = 1/267 (0%)
Query: 7 LVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
+ R TF SGK+K E+R QL+QL ++N++ + AL DL + E +L E+
Sbjct: 10 IHSRLRATFRSGKTKDLEYRLWQLKQLYWAVKDNEEAIVEALKKDLGRPPFETLLTEVSG 69
Query: 67 LANDVRNTLNHLKQWMTPEKP-GKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPA 125
+ ND+ + L +LK+W EK +A M I +P GV LIIG WNYP+ L+L P
Sbjct: 70 VKNDILHMLKNLKKWAKDEKVKDGPLAFMFGKPRIRKEPLGVVLIIGPWNYPVLLALSPL 129
Query: 126 AGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIF 185
GAIAAG V+LKPSE+ P +A ++AEL+PKYLD D FQVV GGV ETT LL+ +FD IF
Sbjct: 130 VGAIAAGCTVVLKPSELTPHTAALLAELVPKYLDPDAFQVVQGGVPETTALLEQKFDKIF 189
Query: 186 YTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCI 245
YTGS VG+I+ +AA +HLTPVTLELGGKSP+ + + ++ELA +R LWGK NAGQ C+
Sbjct: 190 YTGSGRVGRIIAEAAAKHLTPVTLELGGKSPVIVTKNADLELAAKRILWGKFGNAGQICV 249
Query: 246 APDYILCSRQVQAQILNQAKAVLDSWY 272
APDY+L V + + + K VLD +Y
Sbjct: 250 APDYVLVDPSVYDEFVEELKKVLDEFY 276
Score = 114 bits (288), Expect = 1e-27
Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTE 373
+P+ + + ++ELA +R LWGK NAGQ C+APDY+L V + + + K VLD +Y
Sbjct: 219 SPVIVTKNADLELAAKRILWGKFGNAGQICVAPDYVLVDPSVYDEFVEELKKVLDEFYPG 278
Query: 374 QVQGSKHYCRIVSDKHFQRLKSLV-HSSGTIALGGDMDASDRPLYIDSSV 422
S Y RIV+ +HF RLKSL+ + G + +GG+MD + R +I ++
Sbjct: 279 GANASPDYTRIVNPRHFNRLKSLLDTTKGKVVIGGEMDEATR--FIPPTI 326
Score = 45.7 bits (109), Expect = 3e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
P+ + + ++ELA +R LWGK NAGQ
Sbjct: 220 PVIVTKNADLELAAKRILWGKFGNAGQ 246
Score = 39.1 bits (92), Expect = 0.004
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 284 AYHGKYSFNTFTHRKS 299
AYHGKY F+TFTH ++
Sbjct: 418 AYHGKYGFDTFTHERT 433
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 365 bits (938), Expect = e-122
Identities = 131/269 (48%), Positives = 189/269 (70%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
+V+ +++F +GK++P EFR++QL+ L+R+ EEN+Q+ + A+ DL +H E + E+
Sbjct: 11 PIVKKLKESFLTGKTRPLEFRKQQLRNLLRMLEENKQEFSEAVHKDLGRHPFETKMTEVL 70
Query: 66 FLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPA 125
++ + L HL +++ PEK YI P+P GV L+IGAWNYPL L+L+P
Sbjct: 71 LTVAEIEHLLKHLDEYLKPEKVDTVGVFGPGKSYIIPEPLGVVLVIGAWNYPLNLTLIPL 130
Query: 126 AGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIF 185
AGAIAAGN V+LKPSE++P ++K+MA+LL KYLD +V+ GGVE TTELLK FD+IF
Sbjct: 131 AGAIAAGNTVVLKPSELSPHTSKLMAKLLTKYLDPSYVRVIEGGVEVTTELLKEPFDHIF 190
Query: 186 YTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCI 245
+TGS VGK+V QAA E+LTP TLELGGKSP+ +D S N+++A RR WGK +NAGQTC+
Sbjct: 191 FTGSPRVGKLVMQAAAENLTPCTLELGGKSPVIVDKSCNLKVAARRIAWGKFLNAGQTCV 250
Query: 246 APDYILCSRQVQAQILNQAKAVLDSWYTE 274
APDY+L R ++ + + K + ++ E
Sbjct: 251 APDYVLVHRSIKDKFIEALKEAIKEFFGE 279
Score = 114 bits (287), Expect = 2e-27
Identities = 37/101 (36%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 374
P+ +D S N+++A RR WGK +NAGQTC+APDY+L R ++ + + K + ++ E
Sbjct: 221 PVIVDKSCNLKVAARRIAWGKFLNAGQTCVAPDYVLVHRSIKDKFIEALKEAIKEFFGED 280
Query: 375 VQGSKHYCRIVSDKHFQRLKSLVHSS-GTIALGGDMDASDR 414
+ S+ Y RIV++ H +RL L+ G + GG++D ++
Sbjct: 281 PKKSEDYSRIVNEFHTKRLAELIKDHGGKVVYGGEVDIENK 321
Score = 49.3 bits (118), Expect = 3e-06
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 402 TIALGGDMDASDRPLYIDSSVNIELAVRRFLWGKCINAGQ 441
T+ LGG P+ +D S N+++A RR WGK +NAGQ
Sbjct: 213 TLELGGK-----SPVIVDKSCNLKVAARRIAWGKFLNAGQ 247
Score = 36.9 bits (86), Expect = 0.024
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 284 AYHGKYSFNTFTHRKSCLVK 303
AYHGKY F+TF+H K L K
Sbjct: 419 AYHGKYGFDTFSHPKPVLNK 438
Score = 32.7 bits (75), Expect = 0.43
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 453 YHGKYSFVTFTHRKSCLVK 471
YHGKY F TF+H K L K
Sbjct: 420 YHGKYGFDTFSHPKPVLNK 438
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 359 bits (924), Expect = e-120
Identities = 125/270 (46%), Positives = 178/270 (65%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
LV+ R F +G +K EFR QL++L + ++ + ++ AL DL K + EA + EI
Sbjct: 2 SLVEKQRAFFKTGATKDVEFRIEQLKKLKQAIKKYENEILEALKKDLGKSEFEAYMTEIG 61
Query: 66 FLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPA 125
F+ +++ + HLK+WM P++ + N YIY +PYGV LII WNYP QL+L P
Sbjct: 62 FVLSEINYAIKHLKKWMKPKRVKTPLLNFPSKSYIYYEPYGVVLIIAPWNYPFQLALAPL 121
Query: 126 AGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIF 185
GAIAAGN +LKPSE+ P ++K++A+++ + D + VV GGVEE ELL +FDYIF
Sbjct: 122 IGAIAAGNTAVLKPSELTPNTSKVIAKIIEETFDEEYVAVVEGGVEENQELLDQKFDYIF 181
Query: 186 YTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCI 245
+TGS VGKIV +AA +HLTPVTLELGGKSP +D N++LA +R +WGK +NAGQTC+
Sbjct: 182 FTGSVRVGKIVMEAAAKHLTPVTLELGGKSPCIVDEDANLKLAAKRIVWGKFLNAGQTCV 241
Query: 246 APDYILCSRQVQAQILNQAKAVLDSWYTEQ 275
APDY+L V+ + + + K + +Y E
Sbjct: 242 APDYVLVHESVKEKFIKELKEEIKKFYGED 271
Score = 119 bits (301), Expect = 2e-29
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 374
P +D N++LA +R +WGK +NAGQTC+APDY+L V+ + + + K + +Y E
Sbjct: 212 PCIVDEDANLKLAAKRIVWGKFLNAGQTCVAPDYVLVHESVKEKFIKELKEEIKKFYGED 271
Query: 375 VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRPLYI 418
S Y RI+++KHF RL L+ +G I GG+ D YI
Sbjct: 272 PLESPDYGRIINEKHFDRLAGLLD-NGKIVFGGNTDRETL--YI 312
Score = 44.4 bits (106), Expect = 1e-04
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 402 TIALGGDMDASDRPLYIDSSVNIELAVRRFLWGKCINAGQ 441
T+ LGG P +D N++LA +R +WGK +NAGQ
Sbjct: 204 TLELGGK-----SPCIVDEDANLKLAAKRIVWGKFLNAGQ 238
Score = 42.9 bits (102), Expect = 3e-04
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 284 AYHGKYSFNTFTHRKSCLVK 303
+YHGKYSF+TF+H+KS L K
Sbjct: 408 SYHGKYSFDTFSHKKSILKK 427
Score = 40.2 bits (95), Expect = 0.002
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 453 YHGKYSFVTFTHRKSCLVK 471
YHGKYSF TF+H+KS L K
Sbjct: 409 YHGKYSFDTFSHKKSILKK 427
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 302 bits (775), Expect = 2e-98
Identities = 124/270 (45%), Positives = 178/270 (65%), Gaps = 3/270 (1%)
Query: 7 LVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
LV+ R+TF SG+++ E+R+ QL+ L+RL +EN+ D+ AL DL K E+ E+
Sbjct: 4 LVRELRETFRSGRTRSAEWRKSQLKGLLRLVDENEDDIFAALRQDLGKPSAESFRDEVSV 63
Query: 67 LANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAA 126
L + + + LK+WM PEK + I +P GV L+I AWN+P LSL P
Sbjct: 64 LVSSCKLAIKELKKWMAPEKVKTPLTTFPAKAEIVSEPLGVVLVISAWNFPFLLSLEPVI 123
Query: 127 GAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIFY 186
GAIAAGN V+LKPSE+APA++ ++A+L+P+YLD +V+ GGV ETT LL+ ++D IF+
Sbjct: 124 GAIAAGNAVVLKPSELAPATSALLAKLIPEYLDTKAIKVIEGGVPETTALLEQKWDKIFF 183
Query: 187 TGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK--CINAGQTC 244
TGS VG+I+ AA +HLTPVTLELGGK P+ +DS+V++++AVRR GK C N GQ C
Sbjct: 184 TGSPRVGRIIMAAAAKHLTPVTLELGGKCPVIVDSTVDLKVAVRRIAGGKWGC-NNGQAC 242
Query: 245 IAPDYILCSRQVQAQILNQAKAVLDSWYTE 274
IAPDY+L +++ K L+ ++ E
Sbjct: 243 IAPDYVLVEESFAPTLIDALKNTLEKFFGE 272
Score = 83.2 bits (206), Expect = 3e-17
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 315 PLYIDSSVNIELAVRRFLWGK--CINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT 372
P+ +DS+V++++AVRR GK C N GQ CIAPDY+L +++ K L+ ++
Sbjct: 213 PVIVDSTVDLKVAVRRIAGGKWGC-NNGQACIAPDYVLVEESFAPTLIDALKNTLEKFFG 271
Query: 373 EQVQGSKHYCRIVSDKHFQRLKSLVHSSGT---IALGGDMDASDRPLYI----------D 419
E + SK RIV+ HFQRL L+ I GG+ D ++ LYI D
Sbjct: 272 ENPKESKDLSRIVNSHHFQRLSRLLDDPSVADKIVHGGERD--EKNLYIEPTILLDPPLD 329
Query: 420 SSVNIE 425
SS+ E
Sbjct: 330 SSIMTE 335
Score = 38.5 bits (90), Expect = 0.006
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 284 AYHGKYSFNTFTHRKSCLV 302
AYHGK+SF+ F+H+K+ L
Sbjct: 414 AYHGKFSFDAFSHKKAVLY 432
Score = 35.8 bits (83), Expect = 0.048
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 453 YHGKYSFVTFTHRKSCLV 470
YHGK+SF F+H+K+ L
Sbjct: 415 YHGKFSFDAFSHKKAVLY 432
Score = 34.3 bits (79), Expect = 0.13
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 8/42 (19%)
Query: 402 TIALGGDMDASDRPLYIDSSVNIELAVRRFLWGK--CINAGQ 441
T+ LGG P+ +DS+V++++AVRR GK C N GQ
Sbjct: 205 TLELGGKC-----PVIVDSTVDLKVAVRRIAGGKWGC-NNGQ 240
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 277 bits (712), Expect = 8e-89
Identities = 101/247 (40%), Positives = 149/247 (60%)
Query: 26 RRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPE 85
R +L++L + ++++ ALAAD RK E L EI + +++ + + HLK+WM P+
Sbjct: 22 RIAKLKRLKKAILARREEIIAALAADFRKPAAEVDLTEILPVLSEINHAIKHLKKWMKPK 81
Query: 86 KPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPA 145
+ + I +P GVCLII WNYP L+ P AIAAGN ILKPSE+ P
Sbjct: 82 RVRTPLLLFGTKSKIRYEPKGVCLIISPWNYPFNLAFGPLVSAIAAGNTAILKPSELTPH 141
Query: 146 SAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIFYTGSTSVGKIVRQAANEHLT 205
++ ++A+++ + D D V G E LL+ FD+IF+TGS +VGKIV AA +HL
Sbjct: 142 TSAVIAKIIREAFDEDEVAVFEGDAEVAQALLELPFDHIFFTGSPAVGKIVMAAAAKHLA 201
Query: 206 PVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAK 265
VTLELGGKSP +D + +++ A ++ WGK +NAGQTCIAPDY+ V+ + K
Sbjct: 202 SVTLELGGKSPTIVDETADLKKAAKKIAWGKFLNAGQTCIAPDYVFVHESVKDAFVEHLK 261
Query: 266 AVLDSWY 272
A ++ +Y
Sbjct: 262 AEIEKFY 268
Score = 110 bits (277), Expect = 2e-26
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWY--T 372
P +D + +++ A ++ WGK +NAGQTCIAPDY+ V+ + KA ++ +Y
Sbjct: 212 PTIVDETADLKKAAKKIAWGKFLNAGQTCIAPDYVFVHESVKDAFVEHLKAEIEKFYGKD 271
Query: 373 EQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRPLYI 418
+ S RIV+D+HF RLK L+ + + GG DA+ R YI
Sbjct: 272 AARKASPDLARIVNDRHFDRLKGLLDDAVAKGAKVEFGGQFDAAQR--YI 319
Score = 42.6 bits (101), Expect = 3e-04
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 399 SSGTIALGGDMDASDRPLYIDSSVNIELAVRRFLWGKCINAGQ 441
+S T+ LGG P +D + +++ A ++ WGK +NAGQ
Sbjct: 201 ASVTLELGGK-----SPTIVDETADLKKAAKKIAWGKFLNAGQ 238
Score = 29.1 bits (66), Expect = 5.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 284 AYHGKYSFNTFTHRKSCLV 302
+YHG Y F F+H ++ L
Sbjct: 415 SYHGVYGFKAFSHERAVLR 433
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 272 bits (698), Expect = 1e-86
Identities = 105/259 (40%), Positives = 145/259 (55%), Gaps = 17/259 (6%)
Query: 23 YEFRRRQLQQLVRLYEENQQDLANALAADL-RKHKQEAVLFEIEFLANDVRNTLNHLKQW 81
E RR +L +L L +NQ LA A++AD + + E +L EI +++ HLK+W
Sbjct: 19 LEERRDRLDRLKALLLDNQDALAEAISADFGHRSRHETLLAEILPSIAGIKHARKHLKKW 78
Query: 82 MTPEK--------PGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGN 133
M P + P K + P GV II WNYPL L+L P A+AAGN
Sbjct: 79 MKPSRRHVGLLFLPAK--------AEVEYQPLGVVGIIVPWNYPLYLALGPLIAALAAGN 130
Query: 134 VVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIFYTGSTSVG 193
V++KPSE P ++ ++AELL +Y D D VV GG + FD++ +TGST+VG
Sbjct: 131 RVMIKPSEFTPRTSALLAELLAEYFDEDEVAVVTGGADVAAAFSSLPFDHLLFTGSTAVG 190
Query: 194 KIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCS 253
+ V +AA E+LTPVTLELGGKSP I ++ A R +GK +NAGQTC+APDY+L
Sbjct: 191 RHVMRAAAENLTPVTLELGGKSPAIIAPDADLAKAAERIAFGKLLNAGQTCVAPDYVLVP 250
Query: 254 RQVQAQILNQAKAVLDSWY 272
+ + AKA + Y
Sbjct: 251 EDKLEEFVAAAKAAVAKMY 269
Score = 91.0 bits (227), Expect = 9e-20
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 374
P I ++ A R +GK +NAGQTC+APDY+L + + AKA + Y
Sbjct: 213 PAIIAPDADLAKAAERIAFGKLLNAGQTCVAPDYVLVPEDKLEEFVAAAKAAVAKMYP-T 271
Query: 375 VQGSKHYCRIVSDKHFQRLKSLV 397
+ + Y I++++H+ RL+ L+
Sbjct: 272 LADNPDYTSIINERHYARLQGLL 294
Score = 39.4 bits (93), Expect = 0.003
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 402 TIALGGDMDASDRPLYIDSSVNIELAVRRFLWGKCINAGQ 441
T+ LGG S P I ++ A R +GK +NAGQ
Sbjct: 205 TLELGGK---S--PAIIAPDADLAKAAERIAFGKLLNAGQ 239
Score = 33.2 bits (77), Expect = 0.30
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 284 AYHGKYSFNTFTHRKS 299
AYHGK F TF+H K
Sbjct: 416 AYHGKEGFLTFSHAKP 431
Score = 30.9 bits (71), Expect = 1.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 453 YHGKYSFVTFTHRKS 467
YHGK F+TF+H K
Sbjct: 417 YHGKEGFLTFSHAKP 431
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 271 bits (696), Expect = 6e-86
Identities = 114/280 (40%), Positives = 171/280 (61%), Gaps = 8/280 (2%)
Query: 1 MVNFGDLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAV 60
V R+T++SG+++ E+R+ QL+ L+RL ++N++ + AL DL KH+ EA
Sbjct: 5 GETLEGSVAELRETYESGRTRSLEWRKSQLKGLLRLLKDNEEAIFKALHQDLGKHRVEAY 64
Query: 61 LFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQL 120
E+ L L++LK+WM P+K + + P+P GV LI +WN+P+ L
Sbjct: 65 RDEVGVLTKSANLALSNLKKWMAPKKAKLPLVAFPATAEVVPEPLGVVLIFSSWNFPIGL 124
Query: 121 SLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHR 180
SL P GAIAAGN V+LKPSE+APA++ +A +PKYLD+ +V+ GG +LL+H+
Sbjct: 125 SLEPLIGAIAAGNAVVLKPSELAPATSAFLAANIPKYLDSKAVKVIEGGPAVGEQLLQHK 184
Query: 181 FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYID---SSVNIELAVRRFL---W 234
+D IF+TGS VG+I+ AA +HLTPV LELGGK P +D SS + ++AV R + W
Sbjct: 185 WDKIFFTGSPRVGRIIMTAAAKHLTPVALELGGKCPCIVDSLSSSRDTKVAVNRIVGGKW 244
Query: 235 GKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTE 274
G C AGQ CIA DY+L + ++ K+ + ++ E
Sbjct: 245 GSC--AGQACIAIDYVLVEERFAPILIELLKSTIKKFFGE 282
Score = 73.2 bits (180), Expect = 6e-14
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 14/113 (12%)
Query: 318 IDSSVNIELAVRRFL---WGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 374
+ SS + ++AV R + WG C AGQ CIA DY+L + ++ K+ + ++ E
Sbjct: 226 LSSSRDTKVAVNRIVGGKWGSC--AGQACIAIDYVLVEERFAPILIELLKSTIKKFFGEN 283
Query: 375 VQGSKHYCRIVSDKHFQRLKSL-----VHSSGTIALGGDMDASDRPLYIDSSV 422
+ SK RI++ KHFQRL +L V +S I GG +D L+I+ ++
Sbjct: 284 PRESKSMARILNKKHFQRLSNLLKDPRVAAS--IVHGGSIDEKK--LFIEPTI 332
Score = 38.9 bits (91), Expect = 0.005
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 285 YHGKYSFNTFTHRKSCLVKDYNPVLEALSAP 315
YHGKYSF+TF+H K+ L + E P
Sbjct: 425 YHGKYSFDTFSHEKAVLRRSLLTEFEFRYPP 455
Score = 37.4 bits (87), Expect = 0.017
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 452 EYHGKYSFVTFTHRKSCLVKDYNPVLEA 479
YHGKYSF TF+H K+ L + E
Sbjct: 424 RYHGKYSFDTFSHEKAVLRRSLLTEFEF 451
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 237 bits (607), Expect = 4e-74
Identities = 95/263 (36%), Positives = 136/263 (51%), Gaps = 9/263 (3%)
Query: 11 ARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLAND 70
AR F + + P R L+++ L EE +++LA + K E L E+ +
Sbjct: 3 ARAAFKAWAALPPAERAAILRKIADLLEERREELAALETLETGK-PIEEALGEVARAIDT 61
Query: 71 VRNTLNHLKQWMTPEKPGKDIANMLDGV-YIYPDPYGVCLIIGAWNYPLQLSLLPAAGAI 129
R + PE P + G Y+ +P GV +I WN+PL L+ A A+
Sbjct: 62 FRYAAGLADKLGGPELP----SPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPAL 117
Query: 130 AAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTELLKH-RFDYIFY 186
AAGN V+LKPSE+ P +A +AELL + L VV G G E LL H R D I +
Sbjct: 118 AAGNTVVLKPSELTPLTALALAELLQEAGLPPGVVNVVPGGGDEVGAALLSHPRVDKISF 177
Query: 187 TGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIA 246
TGST+VGK + +AA E+L PVTLELGGKSP+ +D +++ AV ++G NAGQ C A
Sbjct: 178 TGSTAVGKAIMKAAAENLKPVTLELGGKSPVIVDEDADLDAAVEGAVFGAFFNAGQICTA 237
Query: 247 PDYILCSRQVQAQILNQAKAVLD 269
+L + + + + VL
Sbjct: 238 ASRLLVHESIYDEFVEKLVTVLV 260
Score = 57.6 bits (140), Expect = 5e-09
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLD 368
+P+ +D +++ AV ++G NAGQ C A +L + + + + VL
Sbjct: 206 SPVIVDEDADLDAAVEGAVFGAFFNAGQICTAASRLLVHESIYDEFVEKLVTVLV 260
Score = 36.8 bits (86), Expect = 0.021
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
P+ +D +++ AV ++G NAGQ
Sbjct: 207 PVIVDEDADLDAAVEGAVFGAFFNAGQ 233
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 238 bits (610), Expect = 1e-73
Identities = 90/269 (33%), Positives = 136/269 (50%), Gaps = 9/269 (3%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V AR F + + P R L++L L EE +++LA + K +EA L E+
Sbjct: 4 VAAARAAFKAWAALPPAERAAILRKLADLLEERREELAALETLETGKPIEEA-LGEVARA 62
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGV-YIYPDPYGVCLIIGAWNYPLQLSLLPAA 126
A+ R ++ P + + + +P GV I WN+PL L+ A
Sbjct: 63 ADTFRYYAGLARRLHGEVIP----SPDPGELAIVRREPLGVVGAITPWNFPLLLAAWKLA 118
Query: 127 GAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEET-TELLKH-RFDY 183
A+AAGN V+LKPSE+ P +A ++AELL + L VV G +E L H R D
Sbjct: 119 PALAAGNTVVLKPSELTPLTALLLAELLAEAGLPPGVLNVVTGDGDEVGAALASHPRVDK 178
Query: 184 IFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQT 243
I +TGST+VGK + +AA E+L VTLELGGKSPL + +++ AV+ ++G NAGQ
Sbjct: 179 ISFTGSTAVGKAIMRAAAENLKRVTLELGGKSPLIVFDDADLDAAVKGAVFGAFGNAGQV 238
Query: 244 CIAPDYILCSRQVQAQILNQAKAVLDSWY 272
C A +L + + + + + +
Sbjct: 239 CTAASRLLVHESIYDEFVERLVERVKALK 267
Score = 66.8 bits (164), Expect = 8e-12
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 13/114 (11%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWY-- 371
+PL + +++ AV+ ++G NAGQ C A +L + + + + + +
Sbjct: 210 SPLIVFDDADLDAAVKGAVFGAFGNAGQVCTAASRLLVHESIYDEFVERLVERVKALKVG 269
Query: 372 ---TEQVQGSKHYCRIVSDKHFQRLKSLV----HSSGTIALGGDMDASDRPLYI 418
++S R+ + + + GG + ++
Sbjct: 270 NPLDPDTD----MGPLISAAQLDRVLAYIEDAKAEGAKLLCGGKRLEGGKGYFV 319
Score = 35.6 bits (83), Expect = 0.056
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
PL + +++ AV+ ++G NAGQ
Sbjct: 211 PLIVFDDADLDAAVKGAVFGAFGNAGQ 237
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 239 bits (612), Expect = 2e-73
Identities = 118/273 (43%), Positives = 181/273 (66%), Gaps = 3/273 (1%)
Query: 7 LVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
LV R +FD G ++ YE+R QL++L+ + + ++ ++ AL DL K + E+ ++E+
Sbjct: 15 LVTELRRSFDDGVTRGYEWRVTQLKKLMIICDNHEPEIVAALRDDLGKPELESSVYEVSL 74
Query: 67 LANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAA 126
L N ++ L LK WM PEK + I +P GV L+I AWNYP LS+ P
Sbjct: 75 LRNSIKLALKQLKNWMAPEKAKTSLTTFPASAEIVSEPLGVVLVISAWNYPFLLSIDPVI 134
Query: 127 GAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIFY 186
GAI+AGN V+LKPSE+APAS+ ++A+LL +YLD+ +VV G V ETT LL+ ++D IFY
Sbjct: 135 GAISAGNAVVLKPSELAPASSALLAKLLEQYLDSSAVRVVEGAVTETTALLEQKWDKIFY 194
Query: 187 TGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK--CINAGQTC 244
TGS+ +G+++ AA +HLTPV LELGGKSP+ +DS ++++ VRR + GK C N GQ C
Sbjct: 195 TGSSKIGRVIMAAAAKHLTPVVLELGGKSPVVVDSDTDLKVTVRRIIAGKWGC-NNGQAC 253
Query: 245 IAPDYILCSRQVQAQILNQAKAVLDSWYTEQEI 277
I+PDYIL +++ ++++ K L+++Y + +
Sbjct: 254 ISPDYILTTKEYAPKVIDAMKKELETFYGKNPM 286
Score = 70.8 bits (173), Expect = 4e-13
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 303 KDYNPVLEAL--SAPLYIDSSVNIELAVRRFLWGK--CINAGQTCIAPDYILCSRQVQAQ 358
K PV+ L +P+ +DS ++++ VRR + GK C N GQ CI+PDYIL +++ +
Sbjct: 210 KHLTPVVLELGGKSPVVVDSDTDLKVTVRRIIAGKWGC-NNGQACISPDYILTTKEYAPK 268
Query: 359 ILNQAKAVLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHS---SGTIALGGDMD 410
+++ K L+++Y + SK RIV+ HF RL L+ S I GG+ D
Sbjct: 269 VIDAMKKELETFYGKNPMESKDMSRIVNSTHFDRLSKLLDEKEVSDKIVYGGEKD 323
Score = 33.5 bits (76), Expect = 0.25
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 284 AYHGKYSFNTFTHRKSCLVK 303
AYHGK+SF+ F+H+K+ L +
Sbjct: 425 AYHGKFSFDAFSHKKAVLYR 444
Score = 30.0 bits (67), Expect = 3.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 453 YHGKYSFVTFTHRKSCLVK 471
YHGK+SF F+H+K+ L +
Sbjct: 426 YHGKFSFDAFSHKKAVLYR 444
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 221 bits (564), Expect = 2e-66
Identities = 88/267 (32%), Positives = 128/267 (47%), Gaps = 8/267 (2%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V AR F++ E R L+++ L E ++LA + + K EA EI
Sbjct: 42 VAAARAAFEAWSRLSAEERAAILRRIADLLEARAEELAALITLETGKPISEA-RGEIARA 100
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAG 127
A+ +R ++ P + + +P GV I WN+PL L+ A
Sbjct: 101 ADFIRYYAEEARRLEGETIPTDKGSKA----LVRREPLGVVGAITPWNFPLALAAWKLAP 156
Query: 128 AIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTE-LLKH-RFDYI 184
A+AAGN V+LKPSE P SA +AEL + L VV GG E + L+ H D I
Sbjct: 157 ALAAGNTVVLKPSEQTPLSALALAELAAEAGLPAGVLNVVTGGGAEVGDALVAHPDVDAI 216
Query: 185 FYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTC 244
+TGST+VG+ + AA +L PVTLELGGKSP + +++ AV ++G NAGQ C
Sbjct: 217 SFTGSTAVGRAIAAAAAANLKPVTLELGGKSPAIVLEDADLDAAVDAAVFGAFFNAGQRC 276
Query: 245 IAPDYILCSRQVQAQILNQAKAVLDSW 271
A ++ V + + + A S
Sbjct: 277 TAASRLIVHESVYDEFVERLVARAASL 303
Score = 51.1 bits (123), Expect = 8e-07
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTE 373
+P + +++ AV ++G NAGQ C A ++ V + + + A S
Sbjct: 247 SPAIVLEDADLDAAVDAAVFGAFFNAGQRCTAASRLIVHESVYDEFVERLVARAASL--- 303
Query: 374 QVQG-----SKHYCRIVSDKHFQRLKSLV 397
G S ++S++ R++ +
Sbjct: 304 -KVGDPLDPSTDLGPLISEEQLDRVEGYI 331
Score = 32.7 bits (75), Expect = 0.52
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
P + +++ AV ++G NAGQ
Sbjct: 248 PAIVLEDADLDAAVDAAVFGAFFNAGQ 274
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 194 bits (495), Expect = 2e-56
Identities = 86/274 (31%), Positives = 128/274 (46%), Gaps = 22/274 (8%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V AR F + P R L + L EE + +LA + K EA
Sbjct: 35 VAAARAAFKAWAKTPPSERAAILLKAADLLEERRDELAELETLETGKPLAEA-------- 86
Query: 68 ANDVRNTLNHLKQWMT-PEKPGKDIANMLDGV--YIYPDPYGVCLIIGAWNYPLQLSLLP 124
+V ++ L+ + K + GV Y +P GV I WN+PL L+
Sbjct: 87 RGEVPRAIDTLRYYAGLARKLEGETLPSDPGVLAYTRREPLGVVGAITPWNFPLLLAAWK 146
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTE-LLK 178
A A+AAGN V+LKPSE+ P +A ++AEL LP VV G E + L++
Sbjct: 147 IAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPP----GVLNVVTGSGSEVGDALVE 202
Query: 179 H-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
H D + +TGST VG+ + +AA ++L VTLELGGK+PL + +++ AV ++G
Sbjct: 203 HPDVDKVSFTGSTEVGRRIAKAAAKNLKRVTLELGGKNPLIVFDDADLDAAVEGAVFGAF 262
Query: 238 INAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
NAGQ C A +L + + + + S
Sbjct: 263 GNAGQVCTAGSRLLVHESIYDEFVERLVEAAKSL 296
Score = 48.7 bits (117), Expect = 4e-06
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 15/104 (14%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW--- 370
PL + +++ AV ++G NAGQ C A +L + + + + S
Sbjct: 240 NPLIVFDDADLDAAVEGAVFGAFGNAGQVCTAGSRLLVHESIYDEFVERLVEAAKSLKVG 299
Query: 371 --YTEQVQ-GSKHYCRIVSDKHFQRLKSLVHSS----GTIALGG 407
G ++S K +R+ S + + + GG
Sbjct: 300 DPLDPDTDIGP-----LISKKQRERVLSYIEDAKEEGAKLLCGG 338
Score = 29.4 bits (67), Expect = 4.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
PL + +++ AV ++G NAGQ
Sbjct: 241 PLIVFDDADLDAAVEGAVFGAFGNAGQ 267
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 165 bits (419), Expect = 9e-46
Identities = 79/252 (31%), Positives = 113/252 (44%), Gaps = 22/252 (8%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
V AR + + E R ++L + R ++ +LA L A+ K + +A L
Sbjct: 22 AAVARARAAQRAWAALGVEGRAQRLLRWKRALADHADELAELLHAETGKPRADAGL---- 77
Query: 66 FLANDVRNTLNHLKQW-------MTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPL 118
+V L + + P K + + PYGV +I WNYPL
Sbjct: 78 ----EVLLALEAIDWAARNAPRVLAPRKVPTGLLMPNKKATVEYRPYGVVGVISPWNYPL 133
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPAS----AKIMAELLPKYLDNDTFQVVLGGVEETT 174
+ A+AAGN V+LKPSEV P A+ A P QVV G
Sbjct: 134 LTPMGDIIPALAAGNAVVLKPSEVTPLVGELLAEAWAAAGP---PQGVLQVVTGDGATGA 190
Query: 175 ELLKHRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLW 234
L+ D + +TGS + G+ V AA E L PV LELGGK P+ + + ++E A +W
Sbjct: 191 ALIDAGVDKVAFTGSVATGRKVMAAAAERLIPVVLELGGKDPMIVLADADLERAAAAAVW 250
Query: 235 GKCINAGQTCIA 246
G +NAGQTCI+
Sbjct: 251 GAMVNAGQTCIS 262
Score = 35.7 bits (83), Expect = 0.059
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIA 345
P+ + + ++E A +WG +NAGQTCI+
Sbjct: 232 PMIVLADADLERAAAAAVWGAMVNAGQTCIS 262
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 148 bits (375), Expect = 2e-39
Identities = 90/272 (33%), Positives = 131/272 (48%), Gaps = 21/272 (7%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V AR F + + E R L+++ YE +LA A+ ++ A ++
Sbjct: 42 VAAARRAFPAWSATSVEERAALLERIAEAYEARADELAQAITLEMGAPITLARAAQVGLG 101
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAG 127
+R + LK + E+ G + + +P GVC +I WN+PL +L A
Sbjct: 102 IGHLRAAADALKDFEFEERRGNSL--------VVREPIGVCGLITPWNWPLNQIVLKVAP 153
Query: 128 AIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVEETTELLKH-R 180
A+AAG V+LKPSEVAP SA I+AE+ LP F +V G G L H
Sbjct: 154 ALAAGCTVVLKPSEVAPLSAIILAEILDEAGLPA----GVFNLVNGDGPVVGEALSAHPD 209
Query: 181 FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC-IN 239
D + +TGST GK V +AA + + V LELGGKS I ++E AV R + C N
Sbjct: 210 VDMVSFTGSTRAGKRVAEAAADTVKRVALELGGKSANIILDDADLEKAVPRGV-AACFAN 268
Query: 240 AGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
+GQ+C AP +L R A+ A A +++
Sbjct: 269 SGQSCNAPTRMLVPRSRYAEAEEIAAAAAEAY 300
Score = 36.3 bits (85), Expect = 0.031
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 324 IELAVRRFLWGKC-INAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQG----- 377
+E AV R + C N+GQ+C AP +L R A+ A A +++ V G
Sbjct: 254 LEKAVPRGV-AACFANSGQSCNAPTRMLVPRSRYAEAEEIAAAAAEAY----VVGDPRDP 308
Query: 378 SKHYCRIVSDKHFQRLKSLVHS 399
+ + S F R++ +
Sbjct: 309 ATTLGPLASAAQFDRVQGYIQK 330
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 142 bits (361), Expect = 1e-37
Identities = 93/267 (34%), Positives = 135/267 (50%), Gaps = 17/267 (6%)
Query: 8 VQNARDTFDSG--KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
VQ AR F+SG + P E R R L ++ RL E+ +LA + D K +A
Sbjct: 25 VQAARRAFESGWLRLSPAE-RGRLLLRIARLIREHADELARLESLDTGKPLTQA------ 77
Query: 66 FLANDVRNTLNHLKQWM-TPEKPGKDIANMLDG--VYIYPDPYGVCLIIGAWNYPLQLSL 122
DV + + + +K + + G VY +P+GV I WNYPLQ++
Sbjct: 78 --RADVEAAARYFEYYGGAADKLHGETIPLGPGYFVYTVREPHGVTGHIIPWNYPLQITG 135
Query: 123 LPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTELLKHR 180
A A+AAGN V++KP+E AP +A +AEL + L VV G G E L+ H
Sbjct: 136 RSVAPALAAGNAVVVKPAEDAPLTALRLAELAEEAGLPAGALNVVTGLGAEAGAALVAHP 195
Query: 181 -FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCIN 239
D+I +TGS G V +AA E++ PVTLELGGKSP + + ++E A+ + N
Sbjct: 196 GVDHISFTGSVETGIAVMRAAAENVVPVTLELGGKSPQIVFADADLEAALPVVVNAIIQN 255
Query: 240 AGQTCIAPDYILCSRQVQAQILNQAKA 266
AGQTC A +L R + ++L +
Sbjct: 256 AGQTCSAGSRLLVHRSIYDEVLERLVE 282
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 142 bits (361), Expect = 2e-37
Identities = 79/271 (29%), Positives = 118/271 (43%), Gaps = 15/271 (5%)
Query: 11 ARDTFDSGK-SKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLAN 69
AR FD+G S E R R L+QL E +++L L A++ A +++
Sbjct: 28 ARRAFDTGDWSTDAEERARCLRQLHEALEARKEELRALLVAEVGAPVMTARAMQVDGPIG 87
Query: 70 DVRNTLNHLKQWMTPEK-PGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGA 128
+R + + P + + +P GV I WN+P L+L A A
Sbjct: 88 HLRYFADLADSFPWEFDLPVPALRGGPGRRVVRREPVGVVAAITPWNFPFFLNLAKLAPA 147
Query: 129 IAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTELL--KHRF 181
+AAGN V+LKP+ P SA ++ E+ LP VV G E L R
Sbjct: 148 LAAGNTVVLKPAPDTPLSALLLGEIIAETDLPA----GVVNVVTGSDNAVGEALTTDPRV 203
Query: 182 DYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINA 240
D + +TGST+VG+ I+ QAA L V LELGGKS + ++ A + NA
Sbjct: 204 DMVSFTGSTAVGRRIMAQAA-ATLKRVLLELGGKSANIVLDDADLAAAAPAAVGVCMHNA 262
Query: 241 GQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
GQ C +L R +++ A ++
Sbjct: 263 GQGCALTTRLLVPRSRYDEVVEALAAAFEAL 293
Score = 31.4 bits (72), Expect = 1.1
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 313 SAPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 370
SA + +D ++ A + NAGQ C +L R +++ A ++
Sbjct: 237 SANIVLDD-ADLAAAAPAAVGVCMHNAGQGCALTTRLLVPRSRYDEVVEALAAAFEAL 293
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 140 bits (355), Expect = 6e-37
Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 20/259 (7%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
A + + P + R L++ + EE + ++A+ L + + +A FE+
Sbjct: 6 YAAAAAAQKAWAATPPQERAAILRKAAEILEERRDEIADWLIRESGSTRPKA-AFEVGAA 64
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGV--YIYPDPYGVCLIIGAWNYPLQLSLLPA 125
+R + G+ + + + G + P GV +I +N+PL L++
Sbjct: 65 IAILREAAG-----LPRRPEGEILPSDVPGKESMVRRVPLGVVGVISPFNFPLILAMRSV 119
Query: 126 AGAIAAGNVVILKPSEVAPAS-----AKIMAEL-LPKYLDNDTFQVVLGGVEETTE-LLK 178
A A+A GN V+LKP P + A+I E LPK + VV GG E + L++
Sbjct: 120 APALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGV----LNVVPGGGSEIGDALVE 175
Query: 179 H-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
H R I +TGST+VG+ + + A HL V LELGG +PL + +++LAV +G
Sbjct: 176 HPRVRMISFTGSTAVGRHIGELAGRHLKKVALELGGNNPLIVLDDADLDLAVSAAAFGAF 235
Query: 238 INAGQTCIAPDYILCSRQV 256
++ GQ C+A IL V
Sbjct: 236 LHQGQICMAAGRILVHESV 254
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 133 bits (337), Expect = 3e-34
Identities = 89/269 (33%), Positives = 122/269 (45%), Gaps = 59/269 (21%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V AR F+ G K P E R + L++L L E N ++LA E+
Sbjct: 25 VAAARAAFEGGAWRKLTPTE-RGKLLRRLADLIEANAEELA-----------------EL 66
Query: 65 EFLAN-----DVRNTLNHLKQW--------------MTP-EKPGKDIANMLDGVYIYPDP 104
E N + R + +L +W + P +K + L + +P
Sbjct: 67 ETRDNGKLIRETRAQVRYLAEWYRYYAGLADKIEGAVIPVDKG-----DYL--NFTRREP 119
Query: 105 YGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLD 159
GV I WN PL L A A+AAGN V+LKPSE PAS +A+L P +
Sbjct: 120 LGVVAAITPWNSPLLLLAKKLAPALAAGNTVVLKPSEHTPASTLELAKLAEEAGFPPGV- 178
Query: 160 NDTFQVVLGGVEETTELL-KH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPL 217
VV G ET E L +H I +TG T G+ + +AA E+L PVTLELGGKSP
Sbjct: 179 ---VNVVTGFGPETGEALVEHPLVAKIAFTGGTETGRHIARAAAENLAPVTLELGGKSPN 235
Query: 218 YIDSSVNIELAVRRFLWGKCINAGQTCIA 246
+ +++ AV + G AGQTC+A
Sbjct: 236 IVFDDADLDAAVNGVVAGIFAAAGQTCVA 264
Score = 28.3 bits (64), Expect = 9.8
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 322 VNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSK-- 379
+++ AV + G AGQTC+A +L VQ I ++ L + + +
Sbjct: 241 ADLDAAVNGVVAGIFAAAGQTCVAGSRLL----VQRSIYDEFVERL----VARARAIRVG 292
Query: 380 -------HYCRIVSDKHFQRLKSLVHSS----GTIALGG 407
+ +++ ++++ V + + GG
Sbjct: 293 DPLDPETQMGPLATERQLEKVERYVARAREEGARVLTGG 331
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 132 bits (334), Expect = 7e-34
Identities = 80/260 (30%), Positives = 121/260 (46%), Gaps = 23/260 (8%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A D F + + R R L + + E DL + L + +A FE F
Sbjct: 27 IAAAYDAFPAWAATTPSERERILLKAAEIMERRADDLIDLLIDEGGSTYGKAW-FETTFT 85
Query: 68 ANDVRNTLN---HLK-QWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLL 123
+R ++ + + + PG P GV I +NYPL L+
Sbjct: 86 PELLRAAAGECRRVRGETLPSDSPGTV-------SMSVRRPLGVVAGITPFNYPLILATK 138
Query: 124 PAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEET-TELL 177
A A+AAGN V+LKPSE P +AE+ LPK + F VV GG E EL+
Sbjct: 139 KVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEAGLPKGV----FNVVTGGGAEVGDELV 194
Query: 178 KH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
R + +TGST+VG+ + + A HL +TLELGGK+PL + + +++ AVR +G
Sbjct: 195 DDPRVRMVTFTGSTAVGREIAEKAGRHLKKITLELGGKNPLIVLADADLDYAVRAAAFGA 254
Query: 237 CINAGQTCIAPDYILCSRQV 256
++ GQ C++ I+ V
Sbjct: 255 FMHQGQICMSASRIIVEEPV 274
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 132 bits (333), Expect = 1e-33
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 6/244 (2%)
Query: 26 RRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPE 85
RR+ L+ L++ ENQ+++ D K +A L EI +R TL H ++ + PE
Sbjct: 42 RRKVLRSLLKYILENQEEICRVACRDTGKTMVDASLGEILVTCEKIRWTLKHGEKALRPE 101
Query: 86 KPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPA 145
+ + +P GV I +WNYP L P A+ AGN +++K SE
Sbjct: 102 SRPGGLLMFYKRARVEYEPLGVVGAIVSWNYPFHNLLGPIIAALFAGNAIVVKVSEQVAW 161
Query: 146 SAKIMAELLPKYLDN-----DTFQVVLGGVEETTELLKH-RFDYIFYTGSTSVGKIVRQA 199
S+ ++ + L D Q+V E L H D+I + GS VGK V A
Sbjct: 162 SSGFFLSIIRECLAACGHDPDLVQLVTCLPETAEALTSHPVIDHITFIGSPPVGKKVMAA 221
Query: 200 ANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQ 259
A E LTPV LELGGK P + +++ + G ++GQ CI + ++ ++ +
Sbjct: 222 AAESLTPVVLELGGKDPAIVLDDADLDQIASIIMRGTFQSSGQNCIGIERVIVHEKIYDK 281
Query: 260 ILNQ 263
+L
Sbjct: 282 LLEI 285
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 131 bits (332), Expect = 1e-33
Identities = 79/241 (32%), Positives = 108/241 (44%), Gaps = 10/241 (4%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V A+ F + P E RR L + E N ++LA L + K EA FE+
Sbjct: 25 VAAAKAAFPGWSATPLEERRAALLAIADAIEANAEELARLLTLEQGKPLAEAQ-FEVGG- 82
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDG-VYIYPDPYGVCLIIGAWNYPLQLSLLPAA 126
+ L+ + + P + I + V + P GV I WN+PL L+ A
Sbjct: 83 ------AVAWLRYTASLDLPDEVIEDDDTRRVELRRKPLGVVAAIVPWNFPLLLAAWKIA 136
Query: 127 GAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKH-RFDYIF 185
A+ AGN V+LKPS P + EL + L VV GG E L H I
Sbjct: 137 PALLAGNTVVLKPSPFTPLCTLKLGELAQEVLPPGVLNVVSGGDELGPALTSHPDIRKIS 196
Query: 186 YTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCI 245
+TGST+ GK V +A + L VTLELGG + V+I+ + WG IN+GQ C
Sbjct: 197 FTGSTATGKKVMASAAKTLKRVTLELGGNDAAIVLPDVDIDAVAPKLFWGAFINSGQVCA 256
Query: 246 A 246
A
Sbjct: 257 A 257
Score = 31.7 bits (73), Expect = 0.99
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 322 VNIELAVRRFLWGKCINAGQTCIA 345
V+I+ + WG IN+GQ C A
Sbjct: 234 VDIDAVAPKLFWGAFINSGQVCAA 257
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 131 bits (332), Expect = 2e-33
Identities = 77/248 (31%), Positives = 112/248 (45%), Gaps = 19/248 (7%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V A++ F R R L ++ L E +LA + D K A +I
Sbjct: 25 VAAAKEAFPGWSRMSPAERARILHKVADLIEARADELALLESLDTGKPITLARTRDIPRA 84
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGV--YIYPDPYGVCLIIGAWNYPLQLSLLPA 125
A + R +++ Q G+ G Y+ P GV +I WN PL L
Sbjct: 85 AANFRFFADYILQ-----LDGESY-PQDGGALNYVLRQPVGVAGLITPWNLPLMLLTWKI 138
Query: 126 AGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTELL-KH 179
A A+A GN V+LKPSE P +A ++AEL LP VV G E L H
Sbjct: 139 APALAFGNTVVLKPSEWTPLTAWLLAELANEAGLPP----GVVNVVHGFGPEAGAALVAH 194
Query: 180 -RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCI 238
D I +TG T+ G+ + +AA +L PV+LELGGK+P + + +++ AV +
Sbjct: 195 PDVDLISFTGETATGRTIMRAAAPNLKPVSLELGGKNPNIVFADADLDRAVDAAVRSSFS 254
Query: 239 NAGQTCIA 246
N G+ C+A
Sbjct: 255 NNGEVCLA 262
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 128 bits (324), Expect = 2e-32
Identities = 82/252 (32%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA------V 60
V++A+ + E R R L++ L E ++A D K +EA
Sbjct: 25 VKSAKAAQKEWSATSGME-RGRILRKAADLLRERNDEIARLETIDNGKPIEEARVDIDSS 83
Query: 61 LFEIEFLANDVRNTLN--HLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPL 118
+E+ A + TL+ H+ PG A Y +P GVC IGAWNYP+
Sbjct: 84 ADCLEYYAG-LAPTLSGEHV------PLPGGSFA------YTRREPLGVCAGIGAWNYPI 130
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEET 173
Q++ +A A+A GN ++ KPS P +A ++AE+ LP + F VV GG E
Sbjct: 131 QIASWKSAPALACGNAMVYKPSPFTPLTALLLAEILTEAGLPDGV----FNVVQGGGETG 186
Query: 174 TELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRF 232
L +H + +TGS GK V AA + + VTLELGGKSPL I ++E AV
Sbjct: 187 QLLCEHPDVAKVSFTGSVPTGKKVMSAAAKGIKHVTLELGGKSPLIIFDDADLENAVNGA 246
Query: 233 LWGKCINAGQTC 244
+ ++ GQ C
Sbjct: 247 MMANFLSQGQVC 258
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 128 bits (325), Expect = 2e-32
Identities = 78/255 (30%), Positives = 117/255 (45%), Gaps = 22/255 (8%)
Query: 8 VQNARDTFDSG--KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
+ AR FDSG P + R L ++ E+ ++LA + K L E E
Sbjct: 41 IAAARRAFDSGEWPHLPAQERAALLFRIADKIREDAEELARLETLNTGK-----TLRESE 95
Query: 66 FLANDVRNTLNHLKQWMTPEKPGKDIANMLDGV--YIYPDPYGVCLIIGAWNYPLQLSLL 123
+DV N + T K ++ ++ V +P GVC +I WNYPL +
Sbjct: 96 IDIDDVANCFRYYAGLAT--KETGEVYDVPPHVISRTVREPVGVCGLITPWNYPLLQAAW 153
Query: 124 PAAGAIAAGNVVILKPSEVAPASA----KIMAEL-LPKYLDNDTFQVVLGGVEETTELL- 177
A A+AAGN V++KPSEV P + +++ E LP +V G L
Sbjct: 154 KLAPALAAGNTVVIKPSEVTPLTTIALFELIEEAGLPA----GVVNLVTGSGATVGAELA 209
Query: 178 -KHRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
D + +TG T+ G+ + +AA ++ V LELGGK+P + + + E AV + L G
Sbjct: 210 ESPDVDLVSFTGGTATGRSIMRAAAGNVKKVALELGGKNPNIVFADADFETAVDQALNGV 269
Query: 237 CINAGQTCIAPDYIL 251
NAGQ C A +L
Sbjct: 270 FFNAGQVCSAGSRLL 284
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 127 bits (323), Expect = 2e-32
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 7/242 (2%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A F + + + R L++L L E + +LA + ++ K EA E+E
Sbjct: 5 LDRAHAAFLAWRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEARA-EVEKC 63
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAG 127
A R + + ++ E I Y+ +P GV L I WN+P AA
Sbjct: 64 AWICRYYAENAEAFLADEP----IETDAGKAYVRYEPLGVVLGIMPWNFPFWQVFRFAAP 119
Query: 128 AIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTELLKH-RFDYIF 185
+ AGN V+LK + P A + EL + FQ +L ++ ++ R +
Sbjct: 120 NLMAGNTVLLKHASNVPGCALAIEELFREAGFPEGVFQNLLIDSDQVEAIIADPRVRGVT 179
Query: 186 YTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCI 245
TGS G+ V A ++L LELGG P + +++ AV+ + G+ NAGQ+CI
Sbjct: 180 LTGSERAGRAVAAEAGKNLKKSVLELGGSDPFIVLDDADLDKAVKTAVKGRLQNAGQSCI 239
Query: 246 AP 247
A
Sbjct: 240 AA 241
Score = 36.3 bits (85), Expect = 0.037
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 323 NIELAVRRFLWGKCINAGQTCIAP 346
+++ AV+ + G+ NAGQ+CIA
Sbjct: 218 DLDKAVKTAVKGRLQNAGQSCIAA 241
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 127 bits (321), Expect = 5e-32
Identities = 82/272 (30%), Positives = 116/272 (42%), Gaps = 43/272 (15%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A F + + R L++ L E +DLA L + K EA E+++
Sbjct: 25 IDAAAAAFKTWRKTTARERAAILRRWADLIRERAEDLARLLTLEQGKPLAEARG-EVDYA 83
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPD-----------PYGVCLIIGAWNY 116
A+ + W E A + G I P GV I WN+
Sbjct: 84 ASFLE--------WFAEE------ARRIYGRTIPSPAPGKRILVIKQPVGVVAAITPWNF 129
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVE 171
P + A A+AAG V+LKP+E P SA +AEL LP VV G
Sbjct: 130 PAAMITRKIAPALAAGCTVVLKPAEETPLSALALAELAEEAGLPA----GVLNVVTGSPA 185
Query: 172 ETTE-LLKH-RFDYIFYTGSTSVGKIV-RQAANEHLTPVTLELGGKSPLYIDSSVNIELA 228
E E L R I +TGST+VGK++ QAA + + V+LELGG +P + +++ A
Sbjct: 186 EIGEALCASPRVRKISFTGSTAVGKLLMAQAA-DTVKRVSLELGGNAPFIVFDDADLDKA 244
Query: 229 VRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
V + K NAGQTC+ + I V I
Sbjct: 245 VDGAIASKFRNAGQTCVCANRIY----VHESI 272
Score = 37.4 bits (88), Expect = 0.016
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
AP + +++ AV + K NAGQTC+ + I V I
Sbjct: 231 APFIVFDDADLDKAVDGAIASKFRNAGQTCVCANRIY----VHESI 272
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 126 bits (319), Expect = 8e-32
Identities = 82/271 (30%), Positives = 118/271 (43%), Gaps = 41/271 (15%)
Query: 11 ARDTFDSGKSKP-YEFRRRQLQQLVRLYEENQQDLANALA-------ADLRKHKQEAVLF 62
A++ KS P YE R L++ +L EE +++ A +A D RK A+
Sbjct: 30 AKEGAKEMKSLPAYE-RAEILERAAQLLEERREEFARTIALEAGKPIKDARKEVDRAIE- 87
Query: 63 EIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGV--------YIYPDPYGVCLIIGAW 114
+ A + + L P D + +P GV I +
Sbjct: 88 TLRLSAEEAK----RLAGETIP----------FDASPGGEGRIGFTIREPIGVVAAITPF 133
Query: 115 NYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPK-YLDNDTFQVVLGGVEET 173
N+PL L AIAAGN V+LKP+ P SA +AELL + L VV G E
Sbjct: 134 NFPLNLVAHKVGPAIAAGNAVVLKPASQTPLSALKLAELLLEAGLPKGALNVVTGSGETV 193
Query: 174 -TELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRR 231
L+ R I +TGS +VG+ + + A L VTLELG + + +D+ ++E AV R
Sbjct: 194 GDALVTDPRVRMISFTGSPAVGEAIARKAG--LKKVTLELGSNAAVIVDADADLEKAVER 251
Query: 232 FLWGKCINAGQTCIAPDYILCSRQVQAQILN 262
+ G NAGQ CI+ I V I +
Sbjct: 252 CVSGAFANAGQVCISVQRIF----VHEDIYD 278
Score = 37.2 bits (87), Expect = 0.015
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILN 361
A + +D+ ++E AV R + G NAGQ CI+ I V I +
Sbjct: 235 AAVIVDADADLEKAVERCVSGAFANAGQVCISVQRIF----VHEDIYD 278
Score = 29.1 bits (66), Expect = 5.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 412 SDRPLYIDSSVNIELAVRRFLWGKCINAGQ 441
S+ + +D+ ++E AV R + G NAGQ
Sbjct: 233 SNAAVIVDADADLEKAVERCVSGAFANAGQ 262
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 126 bits (320), Expect = 8e-32
Identities = 85/257 (33%), Positives = 121/257 (47%), Gaps = 34/257 (13%)
Query: 8 VQNARDTFDSGKSK---PYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V+ AR F++G + P E R R L +L L E ++ +LA + D K +E+ ++
Sbjct: 47 VKAARAAFETGWWRKMDPRE-RGRLLNKLADLIERDRDELAALESLDNGKPLEESAKGDV 105
Query: 65 EFLANDVRNTLNHLKQW------MTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPL 118
L + W T G +A Y +P GVC I WN+PL
Sbjct: 106 ----ALSIKCLRYYAGWADKIQGKTIPIDGNFLA------YTRREPIGVCGQIIPWNFPL 155
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEET 173
+ A A+AAGN V+LKP+E P SA +AEL P + N ++ G T
Sbjct: 156 LMLAWKLAPALAAGNTVVLKPAEQTPLSALYLAELIKEAGFPPGVVN-----IVPGFGPT 210
Query: 174 T--ELLKH-RFDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAV 229
+ H D I +TGST+VG+ I+ AA +L VTLELGGKSP + +++ AV
Sbjct: 211 AGAAISSHMDVDKIAFTGSTAVGRTIMEAAAKSNLKKVTLELGGKSPNIVFDDADLDKAV 270
Query: 230 RRFLWGKCINAGQTCIA 246
+G N GQ C A
Sbjct: 271 EWAAFGIFFNQGQCCCA 287
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 126 bits (319), Expect = 8e-32
Identities = 66/178 (37%), Positives = 93/178 (52%), Gaps = 11/178 (6%)
Query: 96 DGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-- 153
Y +P GVC+ IGAWNYPLQ++ A A+AAGN ++ KPSE P +A +AE+
Sbjct: 125 SFAYTIREPLGVCVGIGAWNYPLQIASWKIAPALAAGNAMVFKPSENTPLTALKVAEIME 184
Query: 154 ---LPKYLDNDTFQVVLGGVEETTELL-KHR-FDYIFYTGSTSVGKIVRQAANEHLTPVT 208
LPK + F VV G E LL H + +TG GK + AA HL VT
Sbjct: 185 EAGLPKGV----FNVVQGDGAEVGPLLVNHPDVAKVSFTGGVPTGKKIMAAAAGHLKHVT 240
Query: 209 LELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA 266
+ELGGKSPL + ++E AV + G +AGQ C + ++++ + L +
Sbjct: 241 MELGGKSPLIVFDDADLESAVDGAMLGNFFSAGQVCSNGTRVFVHKKIKERFLARLVE 298
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 126 bits (318), Expect = 1e-31
Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 24/250 (9%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAAD----LRKHKQE--AVL 61
++ AR ++ P E R+ + + V L N ++A L + + E +L
Sbjct: 24 LERARAAQKGWRAVPLEERKAIVTRAVELLAANTDEIAEELTWQMGRPIAQAGGEIRGML 83
Query: 62 FEIEFL---ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPL 118
++ A + L PEK G + YI +P GV LII WNYP
Sbjct: 84 ERARYMISIAEEA------LADIRVPEKDGFE-------RYIRREPLGVVLIIAPWNYPY 130
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTELL 177
++ A+ AGN VILK S P + A + L FQV+ E + L+
Sbjct: 131 LTAVNAVIPALLAGNAVILKHSPQTPLCGERFAAAFAEAGLPEGVFQVLHLSHETSAALI 190
Query: 178 K-HRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
R D++ +TGS + G+ +++AA V LELGGK P Y+ +++ A + G
Sbjct: 191 ADPRIDHVSFTGSVAGGRAIQRAAAGRFIKVGLELGGKDPAYVRPDADLDAAAESLVDGA 250
Query: 237 CINAGQTCIA 246
N+GQ+C +
Sbjct: 251 FFNSGQSCCS 260
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 124 bits (312), Expect = 7e-31
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 13/245 (5%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V A+ F + P R + L ++ E ++LA LA + + E L
Sbjct: 25 VAAAKAAFPEWAATPARERGKLLARIADALEARSEELARLLALETGNALRTQARPEAAVL 84
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDI---ANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLP 124
A+ L + E G+ + ++L Y +P GV I WN PL L+ L
Sbjct: 85 AD-----LFRYFGGLAGELKGETLPFGPDVLT--YTVREPLGVVGAILPWNAPLMLAALK 137
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTE-LLKHR-FD 182
A A+ AGN V+LK +E AP + ++AE+L + L V+ G EE L+ H D
Sbjct: 138 IAPALVAGNTVVLKAAEDAPLAVLLLAEILAQVLPAGVLNVITGYGEECGAALVDHPDVD 197
Query: 183 YIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWG-KCINAG 241
+ +TGST VGKI+ +AA + L PV+LELGGKSP+ + +++ AV + G + G
Sbjct: 198 KVTFTGSTEVGKIIYRAAADRLIPVSLELGGKSPMIVFPDADLDDAVDGAIAGMRFTRQG 257
Query: 242 QTCIA 246
Q+C A
Sbjct: 258 QSCTA 262
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 123 bits (310), Expect = 2e-30
Identities = 86/271 (31%), Positives = 127/271 (46%), Gaps = 31/271 (11%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
V A + F + GK+ E R L ++ EEN + LA A D K +E
Sbjct: 44 VDAAHEAFKTWGKTSVAE-RANILNKIADRIEENLELLAVAETLDNGKPIRET------- 95
Query: 67 LANDVRNTLNHLKQWMTPEKPGKDIANMLDG---VYIYPDPYGVCLIIGAWNYPLQLSLL 123
LA D+ ++H + + + + + +D Y + +P GV I WN+PL ++
Sbjct: 96 LAADIPLAIDHFRYFAGVIRAQEGSLSEIDEDTLSYHFHEPLGVVGQIIPWNFPLLMAAW 155
Query: 124 PAAGAIAAGNVVILKPSEVAPAS----AKIMAELLPKYLDNDTFQVVLG-GVEETTELLK 178
A A+AAGN V+LKP+ P S +++ +LLPK + N VV G G E L
Sbjct: 156 KLAPALAAGNTVVLKPASQTPLSILVLMELIGDLLPKGVVN----VVTGFGSEAGKPLAS 211
Query: 179 H-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSV-----NIELAVRRF 232
H R + +TGST+VG+++ Q A E+L PVTLELGGKSP + +
Sbjct: 212 HPRIAKLAFTGSTTVGRLIMQYAAENLIPVTLELGGKSPNIFFDDAMDADDDFDDKAEEG 271
Query: 233 LWGKCINAGQTCIAPDYILCSRQVQAQILNQ 263
G N G+ C P L VQ I ++
Sbjct: 272 QLGFAFNQGEVCTCPSRAL----VQESIYDE 298
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 122 bits (309), Expect = 2e-30
Identities = 81/266 (30%), Positives = 112/266 (42%), Gaps = 25/266 (9%)
Query: 8 VQNARDTFDSGK-SKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI-- 64
V A F S + + P E R + L +L EEN ++LA + + K E+
Sbjct: 25 VAAAHAAFPSWRRTTPAE-RSKALLKLADAIEENAEELAALESRNTGKPLHLVRDDELPG 83
Query: 65 -----EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGV--YIYPDPYGVCLIIGAWNYP 117
F A R G L G I +P GV I WNYP
Sbjct: 84 AVDNFRFFAGAARTL------------EGPAAGEYLPGHTSMIRREPIGVVAQIAPWNYP 131
Query: 118 LQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELL 177
L ++ A A+AAGN V+LKPSE P + ++AEL + L VV GG + L
Sbjct: 132 LMMAAWKIAPALAAGNTVVLKPSETTPLTTLLLAELAAEVLPPGVVNVVCGGGASAGDAL 191
Query: 178 --KHRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWG 235
R + TGS GK V +AA + L V LELGGK+P+ + +++ AV
Sbjct: 192 VAHPRVRMVSLTGSVRTGKKVARAAADTLKRVHLELGGKAPVIVFDDADLDAAVAGIATA 251
Query: 236 KCINAGQTCIAPDYILCSRQVQAQIL 261
NAGQ C A + V + +
Sbjct: 252 GYYNAGQDCTAACRVYVHESVYDEFV 277
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 122 bits (308), Expect = 2e-30
Identities = 84/279 (30%), Positives = 121/279 (43%), Gaps = 30/279 (10%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA------VL 61
V+ AR F K R + L+ + E +++LA A D K EA V
Sbjct: 25 VRAARRAFPRWKKTTGAERAKYLRAIAEGVRERREELAELEARDNGKPLDEAAWDVDDVA 84
Query: 62 FEIEF---LANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPL 118
E+ LA + P +D + +P GV +I WN+PL
Sbjct: 85 GCFEYYADLAEQLDAKAE-----RAVPLPSEDFK-----ARVRREPVGVVGLITPWNFPL 134
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAP----ASAKIMAEL-LPKYLDNDTFQVVLGGVEET 173
++ A A+AAG V+LKPSE+ A+I AE LP VV G +E
Sbjct: 135 LMAAWKVAPALAAGCTVVLKPSELTSLTELELAEIAAEAGLPP----GVLNVVTGTGDEA 190
Query: 174 -TELLKHR-FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRR 231
L H D I +TGST+ G V QAA + + PV+LELGGKSP+ + ++E AV
Sbjct: 191 GAPLAAHPGIDKISFTGSTATGSQVMQAAAQDIKPVSLELGGKSPIIVFDDADLEKAVEW 250
Query: 232 FLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDS 270
++G N GQ C A +L + L + ++
Sbjct: 251 AMFGCFWNNGQICSATSRLLVHESIADAFLERLATAAEA 289
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 121 bits (305), Expect = 5e-30
Identities = 76/272 (27%), Positives = 123/272 (45%), Gaps = 39/272 (14%)
Query: 19 KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA------VLFEIEFLANDVR 72
K+ P E RR L + L E + + A +E F ++ A +R
Sbjct: 18 KTPPSE-RRDILLKAADLLESRRDEFIEA-------MMEETGATAAWAGFNVDLAAGMLR 69
Query: 73 NTLNHLKQWMTPEKPGKDIANMLDGVY--IYPDPYGVCLIIGAWNYPLQLSLLPAAGAIA 130
+ + + G I + G + +P GV L I WN P+ L A +A
Sbjct: 70 EAAS-----LITQIIGGSIPSDKPGTLAMVVKEPVGVVLGIAPWNAPVILGTRAIAYPLA 124
Query: 131 AGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVE---ETTE-LLKH-- 179
AGN V+LK SE++P + ++ + LPK VV E E E L+ H
Sbjct: 125 AGNTVVLKASELSPRTHWLIGRVFHEAGLPK----GVLNVVTHSPEDAPEVVEALIAHPA 180
Query: 180 -RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCI 238
R + +TGST VG+I+ + A +HL PV LELGGK+P + +++ A L+G +
Sbjct: 181 VRK--VNFTGSTRVGRIIAETAAKHLKPVLLELGGKAPAIVLEDADLDAAANAALFGAFL 238
Query: 239 NAGQTCIAPDYILCSRQVQAQILNQAKAVLDS 270
N+GQ C++ + I+ + + + + KA +
Sbjct: 239 NSGQICMSTERIIVHESIADEFVEKLKAAAEK 270
Score = 32.2 bits (74), Expect = 0.60
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 307 PVLEALS--APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAK 364
PVL L AP + +++ A L+G +N+GQ C++ + I+ + + + + K
Sbjct: 206 PVLLELGGKAPAIVLEDADLDAAANAALFGAFLNSGQICMSTERIIVHESIADEFVEKLK 265
Query: 365 AVLDSWYTEQVQGSKHYCRI-VSDKHFQRLKSLV 397
A E++ VS R+K LV
Sbjct: 266 AA-----AEKLFAGPVVLGSLVSAAAADRVKELV 294
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 121 bits (306), Expect = 5e-30
Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 31/274 (11%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V A + + P R L++L L EN +LA + + K A + E+EF
Sbjct: 41 VDAAEAAQKAWERLPAIERAAYLRKLADLIRENADELAKLIVEEQGKTLSLARV-EVEFT 99
Query: 68 ANDVRNTLNHLKQW--------MTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQ 119
A+ + ++ +W + ++P ++I +I+ P GV I WN+P
Sbjct: 100 ADYID----YMAEWARRIEGEIIPSDRPNENI-------FIFKVPIGVVAGILPWNFPFF 148
Query: 120 LSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVEET 173
L A A+ GN +++KPSE P +A AEL LP + +V G G
Sbjct: 149 LIARKLAPALVTGNTIVIKPSEETPLNALEFAELVDEAGLPAGV----LNIVTGRGSVVG 204
Query: 174 TELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRF 232
L+ H + I TGST G+ + +AA E++T V+LELGGK+P + +++LAV+
Sbjct: 205 DALVAHPKVGMISLTGSTEAGQKIMEAAAENITKVSLELGGKAPAIVMKDADLDLAVKAI 264
Query: 233 LWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA 266
+ + IN GQ C + + + + + +
Sbjct: 265 VDSRIINCGQVCTCAERVYVHEDIYDEFMEKLVE 298
Score = 33.0 bits (76), Expect = 0.41
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA 365
AP + +++LAV+ + + IN GQ C + + + + + +
Sbjct: 247 APAIVMKDADLDLAVKAIVDSRIINCGQVCTCAERVYVHEDIYDEFMEKLVE 298
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 121 bits (306), Expect = 6e-30
Identities = 74/260 (28%), Positives = 115/260 (44%), Gaps = 23/260 (8%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALA-------ADLRKHKQEAV 60
V+ AR+ F + P R L + L ++ +++LA + A+ R QEA+
Sbjct: 43 VEAAREAFPEWRKVPAPRRAEYLFRAAELLKKRKEELARLVTREMGKPLAEGRGDVQEAI 102
Query: 61 LFEIEFLANDVRNTLNHLKQWMTP-EKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQ 119
++ A + R L P E P KD P GV +I WN+P+
Sbjct: 103 DM-AQYAAGEGR----RLFGETVPSELPNKD-------AMTRRQPIGVVALITPWNFPVA 150
Query: 120 LSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTE-LL 177
+ A+ GN V+ KP+E PA A + EL + L VV G EE E L+
Sbjct: 151 IPSWKIFPALVCGNTVVFKPAEDTPACALKLVELFAEAGLPPGVVNVVHGRGEEVGEALV 210
Query: 178 KH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
+H D + +TGST VG+ + + V LE+GGK+P+ + +++LA+ LW
Sbjct: 211 EHPDVDVVSFTGSTEVGERIGETCARPNKRVALEMGGKNPIIVMDDADLDLALEGALWSA 270
Query: 237 CINAGQTCIAPDYILCSRQV 256
GQ C A ++ V
Sbjct: 271 FGTTGQRCTATSRLIVHESV 290
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 121 bits (305), Expect = 8e-30
Identities = 86/261 (32%), Positives = 129/261 (49%), Gaps = 14/261 (5%)
Query: 8 VQNARDTFDSGKSK-PYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
V+ AR F+S SK E R L +L L E+N+ LA A D K L +++
Sbjct: 51 VKAARKAFESWWSKVTGEERGELLDKLADLVEKNRDLLAAIEALDSGKPYHSNALGDLD- 109
Query: 67 LANDVRNTLNHLKQWMTPEKPGKDIANMLDGV-YIYPDPYGVCLIIGAWNYPLQLSLLPA 125
++ + + W + GK I + + Y +PYGVC I WNYPL ++
Sbjct: 110 ---EIIAVIRYYAGWADKIQ-GKTIPTSPNKLAYTLHEPYGVCGQIIPWNYPLAMAAWKL 165
Query: 126 AGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTELLKH-RFD 182
A A+AAGN V++KP+E P S A L+ + ++ G G + L +H D
Sbjct: 166 APALAAGNTVVIKPAENTPLSLLYFANLVKEAGFPPGVVNIIPGYGAVAGSALAEHPDVD 225
Query: 183 YIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQ 242
I +TGST+ G++V +AA ++L VTLE GGKSP + +++ AV+ G N+GQ
Sbjct: 226 KIAFTGSTATGRLVMKAAAQNLKAVTLECGGKSPALVFEDADLDQAVKWAAAGIMYNSGQ 285
Query: 243 TCIAPDYILCSRQVQAQILNQ 263
C A I VQ I ++
Sbjct: 286 NCTATSRIY----VQESIYDK 302
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 120 bits (302), Expect = 2e-29
Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 9/250 (3%)
Query: 7 LVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
+ AR ++ ++ P R L++ L ++ ++ A +A + K ++A E++
Sbjct: 26 ALATARAGAENRRALPPHERMAILERAADLLKKRAEEFAKIIACEGGKPIKDA-RVEVDR 84
Query: 67 LANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIY--PDPYGVCLIIGAWNYPLQLSLLP 124
+ +R ++ E P D D + +P GV L I +N+PL L
Sbjct: 85 AIDTLRLAAEEAERIRGEEIPL-DATQGSDNRLAWTIREPVGVVLAITPFNFPLNLVAHK 143
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELL-PKYLDNDTFQVVLG-GVEETTELLKH-RF 181
A AIA G V+LKP+ P SA +A++L + QVV G R
Sbjct: 144 LAPAIATGCPVVLKPASKTPLSALELAKILVEAGVPEGVLQVVTGEREVLGDAFAADERV 203
Query: 182 DYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAG 241
+ +TGS +VG+ +R A + LELGG +P+ +D +++ A+ G +AG
Sbjct: 204 AMLSFTGSAAVGEALRANAG--GKRIALELGGNAPVIVDRDADLDAAIEALAKGGFYHAG 261
Query: 242 QTCIAPDYIL 251
Q CI+ I
Sbjct: 262 QVCISVQRIY 271
Score = 33.2 bits (76), Expect = 0.30
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYIL 350
AP+ +D +++ A+ G +AGQ CI+ I
Sbjct: 235 APVIVDRDADLDAAIEALAKGGFYHAGQVCISVQRIY 271
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 120 bits (302), Expect = 2e-29
Identities = 67/228 (29%), Positives = 102/228 (44%), Gaps = 9/228 (3%)
Query: 22 PYEFRRRQLQQLVRLYEENQQ---DLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHL 78
P+ R + L E + DL R+H E E+ +A R
Sbjct: 38 PFAERAAVFLRFHDLVLERRDELLDLIQLETGKARRHAFE----EVLDVAIVARYYARRA 93
Query: 79 KQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILK 138
++ + P + I + P GV +I WNYPL L++ A A+ AGN V+LK
Sbjct: 94 ERLLKPRRRRGAIPVLTRTTVNR-RPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVLK 152
Query: 139 PSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTELLKHRFDYIFYTGSTSVGKIVR 197
P +A ELL + L D +QVV G E + DY+ +TGST+ G++V
Sbjct: 153 PDSQTALTALWAVELLIEAGLPRDLWQVVTGPGSEVGGAIVDNADYVMFTGSTATGRVVA 212
Query: 198 QAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCI 245
+ A L +LELGGK+P+ + +++ A + NAGQ C+
Sbjct: 213 ERAGRRLIGCSLELGGKNPMIVLEDADLDKAAAGAVRACFSNAGQLCV 260
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 120 bits (302), Expect = 2e-29
Identities = 87/292 (29%), Positives = 127/292 (43%), Gaps = 53/292 (18%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V AR F+SG + P R+ L +L L E ++ +LA D+ K +A
Sbjct: 30 VAAARRAFESGVWSRLSP-AERKAVLLRLADLIEAHRDELALLETLDMGKPISDA----- 83
Query: 65 EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVY-------------IYPDPYGVCLII 111
LA DV + N +W A +D VY I +P GV +
Sbjct: 84 --LAVDVPSAANTF-RWY---------AEAIDKVYGEVAPTGPDALALITREPLGV---V 128
Query: 112 GA---WNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTF 163
GA WN+PL ++ A A+AAGN V+LKP+E +P +A +AEL LP
Sbjct: 129 GAVVPWNFPLLMAAWKIAPALAAGNSVVLKPAEQSPLTALRLAELALEAGLPA----GVL 184
Query: 164 QVVLGGVEETTELL-KHR-FDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSP-LYI 219
VV G E L H D + +TGST VG+ + + +L V LE GGKSP +
Sbjct: 185 NVVPGFGHTAGEALGLHMDVDALAFTGSTEVGRRFLEYSGQSNLKRVWLECGGKSPNIVF 244
Query: 220 DSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
+ +++ A G N G+ C A +L ++ + L + A W
Sbjct: 245 ADAPDLDAAAEAAAAGIFWNQGEVCSAGSRLLVHESIKDEFLEKVVAAAREW 296
Score = 32.6 bits (75), Expect = 0.46
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 313 SAPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT 372
S + + +++ A G N G+ C A +L ++ + L + A W
Sbjct: 239 SPNIVFADAPDLDAAAEAAAAGIFWNQGEVCSAGSRLLVHESIKDEFLEKVVAAAREWKP 298
Query: 373 ------EQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD 408
G+ +VS+ HF ++ + S + GG
Sbjct: 299 GDPLDPATRMGA-----LVSEAHFDKVLGYIESGKAEGARLVAGGK 339
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 118 bits (297), Expect = 8e-29
Identities = 83/266 (31%), Positives = 126/266 (47%), Gaps = 26/266 (9%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
V+ A++ F + K+ E R L ++ + +EN++ LA D K +E +I
Sbjct: 44 VKAAQEAFKTWRKTTVAE-RANILNKIADIIDENKELLAMVETLDNGKPIRETRAVDIPL 102
Query: 67 LANDVRNTLNHLKQWMTPEKPGKDIANMLDGVY---IYPDPYGVCLIIGAWNYPLQLSLL 123
A+ H + + + + ANM+D + +P GV I WN+P ++
Sbjct: 103 AAD-------HFRYFAGVIRAEEGSANMIDEDTLSIVLREPIGVVGQIIPWNFPFLMAAW 155
Query: 124 PAAGAIAAGNVVILKPSEVAPAS----AKIMAELLPKYLDNDTFQVVLGGVEETTELLKH 179
A A+AAGN V++KPS S AKI+ ++LPK + N +V G ++ E L +
Sbjct: 156 KLAPALAAGNTVVIKPSSTTSLSLLELAKIIQDVLPKGVVN----IVTGKGSKSGEYLLN 211
Query: 180 R--FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
D + +TGST VG+ V AA + L P TLELGGKS I N + A+ G
Sbjct: 212 HPGLDKLAFTGSTEVGRDVAIAAAKKLIPATLELGGKSANIIFDDANWDKALEGAQLGIL 271
Query: 238 INAGQTCIAPDYILCSRQVQAQILNQ 263
N GQ C A I VQ I ++
Sbjct: 272 FNQGQVCCAGSRIF----VQEGIYDE 293
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 117 bits (296), Expect = 2e-28
Identities = 60/155 (38%), Positives = 82/155 (52%), Gaps = 10/155 (6%)
Query: 96 DGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-- 153
VY +P GVC IGAWNYP+Q++ +A A+AAGN +I KPSEV P +A +AE+
Sbjct: 134 SFVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYT 193
Query: 154 ---LPKYLDNDTFQVVLGGVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTL 209
LP + F VV G L +H + +TG GK V AA L VT+
Sbjct: 194 EAGLPDGV----FNVVQGDGRVGAWLTEHPDIAKVSFTGGVPTGKKVMAAAAASLKEVTM 249
Query: 210 ELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTC 244
ELGGKSPL + +++ A + ++GQ C
Sbjct: 250 ELGGKSPLIVFDDADLDRAADIAMLANFYSSGQVC 284
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 116 bits (293), Expect = 2e-28
Identities = 83/260 (31%), Positives = 123/260 (47%), Gaps = 13/260 (5%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V AR F++ + R R L +L L N +LA + D K + A ++
Sbjct: 25 VAAARAAFEAWSAMDPAERGRILWRLAELILANADELARLESLDTGKPIRAARRLDVPRA 84
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDI---ANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLP 124
A+ T + W + G+ I L+ Y +P GV I WN+PL +
Sbjct: 85 AD----TFRYYAGWAD-KIEGEVIPVRGPFLN--YTVREPVGVVGAIVPWNFPLMFAAWK 137
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTE-LLKH-RF 181
A A+AAGN V+LKP+E+ P SA +AEL+ + VV G E L++H
Sbjct: 138 VAPALAAGNTVVLKPAELTPLSALRIAELMAEAGFPAGVLNVVTGFGEVAGAALVEHPDV 197
Query: 182 DYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAG 241
D I +TGST+VG+ + Q A +L V+LELGGKS + + +++ AVR G N G
Sbjct: 198 DKITFTGSTAVGRKIMQGAAGNLKRVSLELGGKSANIVFADADLDAAVRAAATGIFYNQG 257
Query: 242 QTCIAPDYILCSRQVQAQIL 261
Q C A +L + + L
Sbjct: 258 QMCTAGSRLLVHESIYDEFL 277
Score = 30.5 bits (69), Expect = 2.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 323 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQIL 360
+++ AVR G N GQ C A +L + + L
Sbjct: 240 DLDAAVRAAATGIFYNQGQMCTAGSRLLVHESIYDEFL 277
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 115 bits (291), Expect = 5e-28
Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 10/173 (5%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYL 158
P GV I WN PL L+ L A A+AAG V+LKPS P A ++AE LP +
Sbjct: 137 PVGVVAAIVPWNAPLFLAALKIAPALAAGCTVVLKPSPETPLDAYLLAEAAEEAGLPPGV 196
Query: 159 DNDTFQVVLGGVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPL 217
N VV E L++H D + +TGST+ G+ + E L VTLELGGKS
Sbjct: 197 VN----VVPADREVGEYLVRHPGVDKVSFTGSTAAGRRIAAVCGERLARVTLELGGKSAA 252
Query: 218 YIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDS 270
+ +++ AV + +N GQ C+A IL R +++ A + +
Sbjct: 253 IVLDDADLDAAVPGLVPASLMNNGQVCVALTRILVPRSRYDEVVEALAAAVAA 305
Score = 29.1 bits (66), Expect = 6.3
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 324 IELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDS 369
++ AV + +N GQ C+A IL R +++ A + +
Sbjct: 260 LDAAVPGLVPASLMNNGQVCVALTRILVPRSRYDEVVEALAAAVAA 305
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 114 bits (287), Expect = 2e-27
Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 21/240 (8%)
Query: 22 PYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQW 81
P E R L++ ++ EE + ++ L + + +A E R
Sbjct: 53 PQE-RAEILEKAAQILEERRDEIVEWLIRESGSTRIKAN-IEWGAAMAITREAAT----- 105
Query: 82 MTPEKPGKDIANMLDGV--YIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKP 139
G+ + + + G +Y +P GV +I WN+PL LS+ A A+A GN V+LKP
Sbjct: 106 FPLRMEGRILPSDVPGKENRVYREPLGVVGVISPWNFPLHLSMRSVAPALALGNAVVLKP 165
Query: 140 SEVAPAS-----AKIMAEL-LPKYLDNDTFQVVLGGVEET-TELLKHRF-DYIFYTGSTS 191
+ P + AKI E LPK + VV+G E ++H I +TGST
Sbjct: 166 ASDTPITGGLLLAKIFEEAGLPKGV----LNVVVGAGSEIGDAFVEHPVPRLISFTGSTP 221
Query: 192 VGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYIL 251
VG+ + + A HL V LELGG +P + +I+ AV ++GK ++ GQ C+A + I+
Sbjct: 222 VGRHIGELAGRHLKKVALELGGNNPFVVLEDADIDAAVNAAVFGKFLHQGQICMAINRII 281
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 113 bits (285), Expect = 2e-27
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 28/250 (11%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V AR F + E R L++ L + N+++LA ++ + K EA E+ +
Sbjct: 6 VAAARAAFPGWAALSLEERAAILRRFAELLKANKEELARLISRETGKPLWEA-QTEVAAM 64
Query: 68 ANDVRNTLNHLKQWMTPE-KPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLS---LL 123
A + ++ + P +L P+GV + G +N+P L ++
Sbjct: 65 AGKIDISIKAYHERTGERATPMAQGRAVLRH-----RPHGVMAVFGPFNFPGHLPNGHIV 119
Query: 124 PAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTELLK 178
PA + AGN V+ KPSE+ PA A++M EL LP +V GG E L
Sbjct: 120 PA---LLAGNTVVFKPSELTPAVAELMVELWEEAGLPP----GVLNLVQGGRETGEALAA 172
Query: 179 H-RFDYIFYTGSTSVGKIVRQAANEHLTP---VTLELGGKSPLYIDSSVNIELAVRRFLW 234
H D + +TGS + G ++ + P + LE+GG +PL + +I+ A +
Sbjct: 173 HEGIDGLLFTGSAATGLLLHRQFAGR--PGKILALEMGGNNPLVVWDVADIDAAAYLIVQ 230
Query: 235 GKCINAGQTC 244
+ AGQ C
Sbjct: 231 SAFLTAGQRC 240
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 113 bits (285), Expect = 4e-27
Identities = 81/265 (30%), Positives = 110/265 (41%), Gaps = 25/265 (9%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI-- 64
V A F ++ P E R L +L EEN + A + + K A+ EI
Sbjct: 45 VAAADAAFPEWSQTTPKE-RAEALLKLADAIEENADEFARLESLNCGKPLHLALNDEIPA 103
Query: 65 -----EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDG--VYIYPDPYGVCLIIGAWNYP 117
F A R GK L+G I DP GV I WNYP
Sbjct: 104 IVDVFRFFAGAARCL------------EGKAAGEYLEGHTSMIRRDPVGVVASIAPWNYP 151
Query: 118 LQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTE-L 176
L ++ A A+AAGN V+LKPSE+ P +A +AEL L VV G + L
Sbjct: 152 LMMAAWKLAPALAAGNTVVLKPSEITPLTALKLAELAADILPPGVLNVVTGRGATVGDAL 211
Query: 177 LKHR-FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWG 235
+ H + TGS + GK V AA + + LELGGK+P+ + +++ V
Sbjct: 212 VGHPKVRMVSLTGSIATGKHVLSAAADSVKRTHLELGGKAPVIVFDDADLDAVVEGIRTF 271
Query: 236 KCINAGQTCIAPDYILCSRQVQAQI 260
NAGQ C A I R + +
Sbjct: 272 GYYNAGQDCTAACRIYAQRGIYDDL 296
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 113 bits (284), Expect = 5e-27
Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 15/167 (8%)
Query: 85 EKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAP 144
E+PG + +P GV +I A+N+P+ + AA A+ GN V+ KPSE P
Sbjct: 121 ERPGHRL-------MEQWNPLGVVGVITAFNFPVAVPGWNAAIALVCGNTVVWKPSETTP 173
Query: 145 ASA----KIMAELLPKY-LDNDTFQVVLGGVEETTELLKH--RFDYIFYTGSTSVGKIVR 197
+A KI+AE+L K L +V GG + ELL H R + +TGST VG+ V
Sbjct: 174 LTAIAVTKILAEVLEKNGLPPGVVNLVTGGGD-GGELLVHDPRVPLVSFTGSTEVGRRVG 232
Query: 198 QAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTC 244
+ V LELGG + + + +++LAVR L+ AGQ C
Sbjct: 233 ETVARRFGRVLLELGGNNAIIVMDDADLDLAVRAVLFAAVGTAGQRC 279
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 112 bits (282), Expect = 7e-27
Identities = 72/257 (28%), Positives = 115/257 (44%), Gaps = 19/257 (7%)
Query: 11 ARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLAND 70
A D + P R + L ++ L E +++LA L ++ K +++ E+E
Sbjct: 30 AEKAKDVMSNLPAYKRYKILMKVAELIERRKEELAKLLTIEVGKPIKQSR-VEVERTIRL 88
Query: 71 VRNTLNHLKQWMTPEKPGKDIANMLDG--------VYIYPDPYGVCLIIGAWNYPLQLSL 122
+ K G+ I +D + +P GV I +N+P L
Sbjct: 89 FKLAAEEAK-----VLRGETIP--VDAYEYNERRIAFTVREPIGVVGAITPFNFPANLFA 141
Query: 123 LPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEET-TELLKH- 179
A AIA GN V++KPS P +A +A++L + L VV G E E++ +
Sbjct: 142 HKIAPAIAVGNSVVVKPSSNTPLTAIELAKILEEAGLPPGVINVVTGYGSEVGDEIVTNP 201
Query: 180 RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCIN 239
+ + I +TGST+VG ++ A V LELGG P+ + ++E AV + G+ N
Sbjct: 202 KVNMISFTGSTAVGLLIASKAGGTGKKVALELGGSDPMIVLKDADLERAVSIAVRGRFEN 261
Query: 240 AGQTCIAPDYILCSRQV 256
AGQ C A IL +V
Sbjct: 262 AGQVCNAVKRILVEEEV 278
Score = 31.2 bits (71), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 313 SAPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQV 355
S P+ + ++E AV + G+ NAGQ C A IL +V
Sbjct: 236 SDPMIVLKDADLERAVSIAVRGRFENAGQVCNAVKRILVEEEV 278
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 111 bits (279), Expect = 2e-26
Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 13/169 (7%)
Query: 87 PGKDIANMLDG--VYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAP 144
G+ + + G V +P GV +I WN+P+ + A A+A GN V+ KP+E+ P
Sbjct: 116 SGETLPSTRPGVEVETTREPLGVVGLITPWNFPIAIPAWKIAPALAYGNTVVFKPAELTP 175
Query: 145 ASAKIMAEL-----LPKYLDNDTFQVVLG-GVEETTELLKH-RFDYIFYTGSTSVGKIVR 197
ASA + E+ LP F +V+G G E L++H D + +TGST+VG+ +
Sbjct: 176 ASAWALVEILEEAGLPA----GVFNLVMGSGSEVGQALVEHPDVDAVSFTGSTAVGRRIA 231
Query: 198 QAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIA 246
AA V LE+GGK+PL + +++LAV + G + GQ C A
Sbjct: 232 AAAAARGARVQLEMGGKNPLVVLDDADLDLAVECAVQGAFFSTGQRCTA 280
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 111 bits (278), Expect = 2e-26
Identities = 88/277 (31%), Positives = 124/277 (44%), Gaps = 24/277 (8%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V+ AR FD G + YE R R L + L E++ +LA D K ++A E+
Sbjct: 47 VKAARKAFDEGPWPRMTGYE-RSRILLRFADLLEKHADELAALETWDNGKPYEQARYAEV 105
Query: 65 EFLANDVRNTLNHLKQWMTPEKPGKDIANM---LDG---VYIYPDPYGVCLIIGAWNYPL 118
A R + W I M DG VY +P GV I WN+PL
Sbjct: 106 PLAARLFR----YYAGW------ADKIHGMTLPADGPHHVYTLHEPIGVVGQIIPWNFPL 155
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTEL 176
+ A+A GN ++LKP+E P SA + A+L + L + +V G G +
Sbjct: 156 LMFAWKVGPALACGNTIVLKPAEQTPLSALLAAKLAAEAGLPDGVLNIVTGFGPTAGAAI 215
Query: 177 LKHR-FDYIFYTGSTSVGKIVRQ-AANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLW 234
H D + +TGST VGKI+ Q AA +L PVTLELGGKSP + +++ AV +
Sbjct: 216 ASHMDVDKVAFTGSTEVGKIIMQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHF 275
Query: 235 GKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
N GQ C A + + + +AKA
Sbjct: 276 ALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKR 312
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 111 bits (279), Expect = 3e-26
Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 7/147 (4%)
Query: 103 DPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY---LD 159
P GV +I WNYPL L++ A A+ AGN V+LKP P +A ELL Y L
Sbjct: 153 QPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKPDSQTPLTALAAVELL--YEAGLP 210
Query: 160 NDTFQVVLG-GVEETTELLKHRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLY 218
D +QVV G G T L+ + DY+ +TGST+ G+++ + A L +LELGGK+P+
Sbjct: 211 RDLWQVVTGPGPVVGTALVDN-ADYLMFTGSTATGRVLAEQAGRRLIGFSLELGGKNPMI 269
Query: 219 IDSSVNIELAVRRFLWGKCINAGQTCI 245
+ +++ A + NAGQ CI
Sbjct: 270 VLDDADLDKAAAGAVRACFSNAGQLCI 296
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 110 bits (277), Expect = 4e-26
Identities = 82/257 (31%), Positives = 120/257 (46%), Gaps = 31/257 (12%)
Query: 8 VQNARDTFDSGKSKPYEF-----RRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLF 62
V+ AR F G P+ R R L +L L E ++ LA+ D K ++ L
Sbjct: 50 VKAARAAFKLGS--PWRTMDASERGRLLNKLADLIERDRAYLASLETLDNGKPFSKSYLV 107
Query: 63 EIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDG---VYIYPDPYGVCLIIGAWNYPLQ 119
++ +R + GK I +DG Y +P GVC I WN+PL
Sbjct: 108 DLPGAIKVLRYYAGWADKIH-----GKTIP--MDGDFFTYTRHEPVGVCGQIIPWNFPLL 160
Query: 120 LSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELL-----PKYLDNDTFQVVLGGVEETT 174
++ A A+A GN V+LKP+E P +A +A L+ P + N V+ G T
Sbjct: 161 MAAWKLAPALACGNTVVLKPAEQTPLTALYLASLIKEAGFPPGVVN-----VVPGYGPTA 215
Query: 175 --ELLKH-RFDYIFYTGSTSVGKIVRQAA-NEHLTPVTLELGGKSPLYIDSSVNIELAVR 230
+ H D + +TGST VGK+++QAA +L VTLELGGKSP + + +++ AV
Sbjct: 216 GAAISSHPDIDKVAFTGSTEVGKLIQQAAGKSNLKRVTLELGGKSPNIVFADADLDYAVE 275
Query: 231 RFLWGKCINAGQTCIAP 247
+ N GQ C A
Sbjct: 276 QAHEALFFNMGQCCCAG 292
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 107 bits (270), Expect = 3e-25
Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 13/172 (7%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPAS-----AKIMAEL-LPKY 157
P GV +I +N+PL L++ A A+A GN V+LKP P S A++ E LP
Sbjct: 110 PLGVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDPRTPVSGGVVIARLFEEAGLPAG 169
Query: 158 LDNDTFQVVLGGVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSP 216
+ V+ GG + L++ I +TGST+VG+ V +AA HL V+LELGGK+
Sbjct: 170 V----LHVLPGGADAGEALVEDPNVAMISFTGSTAVGRKVGEAAGRHLKKVSLELGGKNA 225
Query: 217 LYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ--AKA 266
L + +++LA WG ++ GQ C+A L V + AKA
Sbjct: 226 LIVLDDADLDLAASNGAWGAFLHQGQICMAAGRHLVHESVADAYTAKLAAKA 277
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 107 bits (269), Expect = 3e-25
Identities = 75/271 (27%), Positives = 121/271 (44%), Gaps = 44/271 (16%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
++ A + F + ++ + R L++ L EN+ DLA + + K +EA EI +
Sbjct: 25 IRAAYEAFKTWRATTAKERSSLLRKWYNLMMENKDDLARLITLENGKPLKEAKG-EILYA 83
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYP-----------DPYGVCLIIGAWNY 116
A+ + +W E A + G I P GVC I WN+
Sbjct: 84 ASFL--------EWFAEE------AKRVYGDTIPSPQSDKRLIVIKQPVGVCAAITPWNF 129
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG--- 168
P + A A+AAG V++KP+E P SA +A L +PK V+ G
Sbjct: 130 PAAMITRKAGAALAAGCTVVVKPAEQTPLSALALARLAEQAGIPK----GVLNVITGSRA 185
Query: 169 ---GVEETTELLKHRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNI 225
G TT L + I +TGST+VGKI+ + + + V++ELGG +P + ++
Sbjct: 186 KEVGNVLTTSPLVRK---ISFTGSTNVGKILMKQSASTVKKVSMELGGNAPFIVFDDADL 242
Query: 226 ELAVRRFLWGKCINAGQTCIAPDYILCSRQV 256
+ AV + K NAGQTC+ + + +
Sbjct: 243 DQAVEGAMASKFRNAGQTCVCANRLYVHDGI 273
Score = 36.3 bits (84), Expect = 0.035
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQV 355
AP + +++ AV + K NAGQTC+ + + +
Sbjct: 232 APFIVFDDADLDQAVEGAMASKFRNAGQTCVCANRLYVHDGI 273
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 107 bits (270), Expect = 4e-25
Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 25/265 (9%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA---VLF 62
D + +A D F S R + L++ L N++DLA + + K +EA V +
Sbjct: 66 DAIASAHDAFPSWSKLTASERSKILRRWYDLIIANKEDLAQLMTLEQGKPLKEAIGEVAY 125
Query: 63 E---IEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDG-VYIYPDPYGVCLIIGAWNYPL 118
+E+ A + + + P + D + + P GV I WN+PL
Sbjct: 126 GASFLEYFAEEAKRVYGDI----IP-------SPFPDRRLLVLKQPVGVVGAITPWNFPL 174
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-LPKYLDNDTFQVVLGGVEETTELL 177
+ A+AAG V++KPSE+ P +A AEL L + VV+G E + L
Sbjct: 175 AMITRKVGPALAAGCTVVVKPSELTPLTALAAAELALQAGIPPGVLNVVMGDAPEIGDAL 234
Query: 178 --KHRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWG 235
+ I +TGST+VGK + A + V+LELGG +P + ++++AV+ L
Sbjct: 235 LASPKVRKITFTGSTAVGKKLMAGAAATVKRVSLELGGNAPFIVFDDADLDVAVKGALAS 294
Query: 236 KCINAGQTCIAPDYILCSRQVQAQI 260
K N+GQTC+ + IL VQ I
Sbjct: 295 KFRNSGQTCVCANRIL----VQEGI 315
Score = 37.4 bits (87), Expect = 0.017
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
AP + ++++AV+ L K N+GQTC+ + IL VQ I
Sbjct: 274 APFIVFDDADLDVAVKGALASKFRNSGQTCVCANRIL----VQEGI 315
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 106 bits (265), Expect = 2e-24
Identities = 82/275 (29%), Positives = 125/275 (45%), Gaps = 20/275 (7%)
Query: 8 VQNARDTFDSGK---SKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V+ AR+ FD G +E R R + + L EE+ ++LA D K LF +
Sbjct: 64 VKAAREAFDHGPWPRMSGFE-RGRIMMKFADLIEEHIEELAALDTIDAGK------LFAL 116
Query: 65 EFLANDVRNTLNHLKQWM-TPEKPGKDIANM---LDGVYIYPDPYGVCLIIGAWNYPLQL 120
D+ L+ + +K + M L G Y +P GV I WN+P +
Sbjct: 117 GKAV-DIPAAAGLLRYYAGAADKIHGETLKMSRQLQG-YTLKEPIGVVGHIIPWNFPSTM 174
Query: 121 SLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTELLK 178
+ A A+AAG +++KP+E P SA A L + + VV G G +
Sbjct: 175 FFMKVAPALAAGCTMVVKPAEQTPLSALFYAHLAKLAGVPDGVINVVTGFGPTAGAAIAS 234
Query: 179 HR-FDYIFYTGSTSVG-KIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
H D + +TGST VG KI++ AA +L V+LELGGKSPL I ++++AV L G
Sbjct: 235 HMDVDKVSFTGSTEVGRKIMQAAATSNLKQVSLELGGKSPLLIFDDADVDMAVDLALLGI 294
Query: 237 CINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
N G+ C+A + + + + + W
Sbjct: 295 FYNKGEICVASSRVYVQEGIYDEFVKKLVEKAKDW 329
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 104 bits (262), Expect = 3e-24
Identities = 80/279 (28%), Positives = 124/279 (44%), Gaps = 40/279 (14%)
Query: 8 VQNARDTFDSGK-SKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA------V 60
+ AR FD + R R L +L +E N + LA LA + K EA
Sbjct: 25 IAAARRAFDETDWAHDPRLRARVLLELADAFEANAERLARLLALENGKILGEARFEISGA 84
Query: 61 LFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQL 120
+ E+ + A R + + +PG + +L +P GV II WN P+ L
Sbjct: 85 ISELRYYAGLARTEAGRMIEP----EPGS-FSLVLR------EPMGVAGIIVPWNSPVVL 133
Query: 121 SLLPAAGAIAAGNVVILKP----SEVAPASAKIMAEL--LPKYLDNDTFQVVLGGVEETT 174
+ A A+AAG V++KP +++ A +I+AE+ LP VV E +
Sbjct: 134 LVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAEIPSLPA-------GVVNLFTESGS 186
Query: 175 ELLKH-----RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAV 229
E H D I +TGST+ G+ + AA L + LELGGK+P + +++ A+
Sbjct: 187 EGAAHLVASPDVDVISFTGSTATGRAIMAAAAPTLKRLGLELGGKTPCIVFDDADLDAAL 246
Query: 230 RRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVL 268
+ I AGQ C+A +L VQ I ++ + L
Sbjct: 247 PKLERALTIFAGQFCMAGSRVL----VQRSIADEVRDRL 281
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 103 bits (258), Expect = 9e-24
Identities = 86/266 (32%), Positives = 120/266 (45%), Gaps = 12/266 (4%)
Query: 8 VQNARDTF--DSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
V+ A F D G R R L +L L E N LA+ A D K A +
Sbjct: 50 VEVAHAAFETDWGLKVSGSKRGRCLSKLADLMERNLDYLASIEALDNGKTFGTAKRVD-- 107
Query: 66 FLANDVRNTLNHLKQWMTPEKPGKDI-ANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLP 124
+ T + W + G+ I ++ Y +P GVC I WN+PL +
Sbjct: 108 -VQASAD-TFRYYGGW-ADKIHGQVIETDIKKLTYTRHEPIGVCGQIIPWNFPLLMCAWK 164
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTELLKH-RF 181
A A+AAGN ++LKPSE+ P SA M +L+P+ VV G G + H
Sbjct: 165 IAPALAAGNTIVLKPSELTPLSALYMTKLIPEAGFPPGVINVVSGYGRTCGNAISSHMDI 224
Query: 182 DYIFYTGSTSVG-KIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINA 240
D + +TGST VG K++ AA +L VTLELGGKSP + ++E AV +G N
Sbjct: 225 DKVAFTGSTLVGRKVMEAAAKSNLKKVTLELGGKSPNIVFDDADLESAVVWTAYGIFFNH 284
Query: 241 GQTCIAPDYILCSRQVQAQILNQAKA 266
GQ C A I + + + + K
Sbjct: 285 GQVCCAGSRIYVQEGIYDKFVKRFKE 310
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 103 bits (260), Expect = 9e-24
Identities = 78/263 (29%), Positives = 117/263 (44%), Gaps = 33/263 (12%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA---VLFEI 64
VQ AR F + + P E R R L + L + +LA + ++ K+ EA V I
Sbjct: 75 VQAARAAFPTWRRTPPEERARLLLRAAALLRRRRFELAAWMVLEVGKNWAEADADVAEAI 134
Query: 65 EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLP 124
+FL R L L+ + PG+D Y+Y P GV +I WN+PL +
Sbjct: 135 DFLEYYAREMLR-LRGFPVEMVPGED------NRYVY-RPLGVGAVISPWNFPLAILAGM 186
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTE-LLK 178
A+ GN V+LKP+E P A + E+ LP + G EE + L++
Sbjct: 187 TTAALVTGNTVVLKPAEDTPVIAAKLVEILEEAGLPP----GVVNFLPGPGEEVGDYLVE 242
Query: 179 H-RFDYIFYTGSTSVG-KIVRQAAN-----EHLTPVTLELGGKSPLYIDSSVNIELAVRR 231
H +I +TGS VG +I +AA + L V E+GGK+ + +D +++ A
Sbjct: 243 HPDVRFIAFTGSREVGLRIYERAAKVQPGQKWLKRVIAEMGGKNAIIVDEDADLDEAAEG 302
Query: 232 FLWGKCINAGQTCIAPDYILCSR 254
+ GQ C A CSR
Sbjct: 303 IVRSAFGFQGQKCSA-----CSR 320
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 103 bits (258), Expect = 1e-23
Identities = 81/268 (30%), Positives = 125/268 (46%), Gaps = 52/268 (19%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAAD--------LRKHK 56
V A++ F++G K + R R + +L L EE+Q++LA + D L+ H
Sbjct: 49 VAAAKEAFENGEWGKMNARD-RGRLMYRLADLMEEHQEELATIESLDSGAVYTLALKTH- 106
Query: 57 QEAVLFEIEFLANDVRNTLNHLKQW----------MTPEKPGKDIANMLDGVYIYPDPYG 106
V I+ T + W + +P +++ +P G
Sbjct: 107 ---VGMSIQ--------TFRYFAGWCDKIQGKTIPINQARPNRNLT------LTKREPIG 149
Query: 107 VCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDND 161
VC I+ WNYPL + A +AAGN V+LKP++V P +A AEL PK + N
Sbjct: 150 VCGIVIPWNYPLMMLAWKMAACLAAGNTVVLKPAQVTPLTALKFAELTVKAGFPKGVIN- 208
Query: 162 TFQVVLGGVEETTELLKHRFDY--IFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLY 218
++ G + L D + +TGST +GK I++ A +L V+LELGGKSPL
Sbjct: 209 ---ILPGSGSLVGQRLSDHPDVRKLGFTGSTPIGKHIMKSCAVSNLKKVSLELGGKSPLI 265
Query: 219 IDSSVNIELAVRRFLWGKCINAGQTCIA 246
I + +++ AVR + N G+ CIA
Sbjct: 266 IFADCDMDKAVRMGMSSVFFNKGENCIA 293
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 102 bits (256), Expect = 2e-23
Identities = 83/285 (29%), Positives = 123/285 (43%), Gaps = 45/285 (15%)
Query: 8 VQNARDTFDSGKSK-----PYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLF 62
V+ AR F K K R + L+ + E + +LA D K EA
Sbjct: 51 VEAARKAFKRNKGKDWARTTGAVRAKYLRAIAAKITERKSELAKLETLDCGKPLDEA--- 107
Query: 63 EIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDG--------------VYIYPDPYGVC 108
+ +DV + D+A LD Y+ +P GV
Sbjct: 108 --AWDMDDVAGCFEYYA----------DLAEALDAKQKAPVSLPMETFKGYVLKEPLGVV 155
Query: 109 LIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPAS----AKIMAEL-LPKYLDNDTF 163
+I WNYPL ++ A A+AAG +LKPSE+A + A I E+ LP
Sbjct: 156 GLITPWNYPLLMATWKVAPALAAGCTAVLKPSELASVTCLELADICREVGLPP----GVL 211
Query: 164 QVVLG-GVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDS 221
VV G G E L H D I +TGST+ G+ + AA + + PV+LELGGKSP+ +
Sbjct: 212 NVVTGLGTEAGAPLASHPGVDKIAFTGSTATGRKIMTAAAQMVKPVSLELGGKSPIIVFD 271
Query: 222 SVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA 266
V+++ AV ++G GQ C A +L ++ ++ L +
Sbjct: 272 DVDLDKAVEWAMFGCFWTNGQICSATSRLLVHERIASEFLEKLVK 316
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 102 bits (255), Expect = 2e-23
Identities = 60/162 (37%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 98 VYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY 157
++ +P GV L I +N+PL A AIAA N ++LKPSE P SA +A+LL +
Sbjct: 114 IFTLREPLGVVLAITPFNHPLNQVAHKIAPAIAANNRIVLKPSEKTPLSAIYLADLLYEA 173
Query: 158 -LDNDTFQVVLGGVEE-TTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGK 214
L D VV G E EL+ H D + +TG +VGK + AA LELGG
Sbjct: 174 GLPPDMLSVVTGEPGEIGDELITHPDVDLVTFTGGVAVGKAI--AATAGYKRQLLELGGN 231
Query: 215 SPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQV 256
PL + ++E A + G N+GQ C A IL V
Sbjct: 232 DPLIVMDDADLERAATLAVAGSYANSGQRCTAVKRILVHESV 273
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 102 bits (255), Expect = 3e-23
Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 15/163 (9%)
Query: 103 DPYGVCLIIGAWNYP-LQLS-LLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LP 155
+P GV II WN+P L LS LP A +AAG V++KPSE + ++AEL LP
Sbjct: 118 EPIGVVGIITPWNFPFLILSQKLPFA--LAAGCTVVVKPSEFTSGTTLMLAELLIEAGLP 175
Query: 156 KYLDNDTFQVVLG-GVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGG 213
+V G G + +H D + +TGST VGK + AA +L V+LELGG
Sbjct: 176 A----GVVNIVTGYGATVGQAMTEHPDVDMVSFTGSTRVGKAIAAAAARNLKKVSLELGG 231
Query: 214 KSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQV 256
K+P + + +++ A ++G NAG+ C + +L +
Sbjct: 232 KNPQIVFADADLDAAADAVVFGVYFNAGECCNSGSRLLVHESI 274
Score = 31.9 bits (73), Expect = 0.82
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 323 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVL------DSWYTEQVQ 376
+++ A ++G NAG+ C + +L + + A D E
Sbjct: 242 DLDAAADAVVFGVYFNAGECCNSGSRLLVHESIADAFVAAVVARSRKVRVGDPLDPETKV 301
Query: 377 GSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRPLYIDSSV 422
G+ I+++ ++ V + T+ LGG+ AS L+ ++
Sbjct: 302 GA-----IINEAQLAKITDYVDAGRAEGATLLLGGERLASAAGLFYQPTI 346
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 100 bits (250), Expect = 6e-23
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 26/228 (11%)
Query: 28 RQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQW------ 81
R++ +R E +++ + + K +Q A + E+ F A+ ++++ +W
Sbjct: 2 RKIAAGIR---ERASEISALIVEEGGKIQQLAEV-EVAFTAD----YIDYMAEWARRYEG 53
Query: 82 --MTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKP 139
+ ++PG++I ++ GV I WN+P L A A+ GN +++KP
Sbjct: 54 EIIQSDRPGENI-------LLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKP 106
Query: 140 SEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTELLKH-RFDYIFYTGSTSVGKIV 196
SE P +A A+++ + L F +VLG G EL + + + TGS S G+ +
Sbjct: 107 SEFTPNNAIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKI 166
Query: 197 RQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTC 244
AA +++T V LELGGK+P + +++LAV+ + + IN+GQ C
Sbjct: 167 MAAAAKNITKVCLELGGKAPAIVMDDADLDLAVKAIVDSRVINSGQVC 214
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 100 bits (252), Expect = 7e-23
Identities = 73/248 (29%), Positives = 107/248 (43%), Gaps = 24/248 (9%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V AR F ++ R R L++L E+ ++LA A D + +
Sbjct: 25 VAAARAAFPEWRATTPLERARMLRELATRLREHAEELALIDALDCG--------NPVSAM 76
Query: 68 ANDVRNTLNHLKQW--MTPEKPGKDIANMLDGV-YIYPDPYGVCLIIGAWNYPLQLSLLP 124
DV L + + E G+ I + Y +PYGV I A+N+PL +
Sbjct: 77 LGDVMVAAALLDYFAGLVTELKGETIPVGGRNLHYTLREPYGVVARIVAFNHPLMFAAAK 136
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTE-LLKHR-FD 182
A +AAGN V++KP E AP SA +AEL + L F ++ G L++H
Sbjct: 137 IAAPLAAGNTVVVKPPEQAPLSALRLAELAREVLPPGVFNILPGDGATAGAALVRHPDVK 196
Query: 183 YIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVR------RFLWGK 236
I GS G+ + +AA E + VTLELGGK+ L + + E A F W
Sbjct: 197 RIALIGSVPTGRAIMRAAAEGIKHVTLELGGKNALIVFPDADPEAAADAAVAGMNFTW-- 254
Query: 237 CINAGQTC 244
GQ+C
Sbjct: 255 ---CGQSC 259
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 98.4 bits (246), Expect = 4e-22
Identities = 74/280 (26%), Positives = 114/280 (40%), Gaps = 40/280 (14%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQ-----LQQLVRLYEENQQDLANALAADLRKHKQEA--- 59
V A+ F + + P +RQ +QL+ EEN +LA + + K +A
Sbjct: 44 VAAAKAAFPAWSATP--VLKRQQVMFKFRQLL---EENLDELARLITLEHGKTLADARGD 98
Query: 60 ---VLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNY 116
L +EF + + HL + E + I D Y Y P GV I +N+
Sbjct: 99 VLRGLEVVEFACS-----IPHLLKGEYLENVARGI----D-TYSYRQPLGVVAGITPFNF 148
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVE 171
P + L AIA GN +LKPSE P +A +AEL LP VV GG E
Sbjct: 149 PAMIPLWMFPMAIACGNTFVLKPSERVPGAAMRLAELLQEAGLPD----GVLNVVHGGKE 204
Query: 172 ETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVR 230
LL H + + GST VG+ + + A + V G K+ + ++E
Sbjct: 205 AVNALLDHPDIKAVSFVGSTPVGEYIYERAAANGKRVQALGGAKNHAVVMPDADLEQTAN 264
Query: 231 RFLWGKCINAGQTCIAPDYILC----SRQVQAQILNQAKA 266
+ AGQ C+A + + + +++ +AK
Sbjct: 265 ALVGAAFGAAGQRCMALSVAVAVGDEADEWIPKLVERAKK 304
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 98.1 bits (245), Expect = 4e-22
Identities = 69/275 (25%), Positives = 114/275 (41%), Gaps = 37/275 (13%)
Query: 9 QNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA------VLF 62
A + R L V EE ++LA + + K ++A +
Sbjct: 31 VKAFRPM--RALPAHR-RAAILLHCVARLEERFEELAETIVLEAGKPIKDARGEVARAID 87
Query: 63 EIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGV--YIYPDPYGVCLIIGAWNYPLQL 120
A + + E DI+ +G + P G I +N+PL L
Sbjct: 88 TFRIAAEEATR--------IYGEVLPLDISARGEGRQGLVRRFPIGPVSAITPFNFPLNL 139
Query: 121 SLLPAAGAIAAGNVVILKPSEVAPASAKIMAELL-----PKYLDNDTFQVVLGGVEETTE 175
A AIAAG +LKP+ P SA I+ E+L PK F V+ ++
Sbjct: 140 VAHKVAPAIAAGCPFVLKPASRTPLSALILGEVLAETGLPK----GAFSVLPCSRDDADL 195
Query: 176 LLKH-RFDYIFYTGSTSVG-KIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFL 233
L+ R + +TGS +VG + +A + V LELGG + + +DS +++ A +R +
Sbjct: 196 LVTDERIKLLSFTGSPAVGWDLKARAGKKK---VVLELGGNAAVIVDSDADLDFAAQRII 252
Query: 234 WGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVL 268
+G AGQ+CI+ +L V + ++ K+ L
Sbjct: 253 FGAFYQAGQSCISVQRVL----VHRSVYDEFKSRL 283
Score = 28.8 bits (65), Expect = 6.5
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVL 367
A + +DS +++ A +R ++G AGQ+CI+ +L V + ++ K+ L
Sbjct: 234 AAVIVDSDADLDFAAQRIIFGAFYQAGQSCISVQRVL----VHRSVYDEFKSRL 283
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 98.3 bits (245), Expect = 6e-22
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 3/151 (1%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDT 162
P G +I WN P LS A A+A GN V+LKP+E +P +A +AE+ + L +
Sbjct: 135 PVGPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEWSPLTAARLAEIAKEAGLPDGV 194
Query: 163 FQVVLGGVEETTE-LLKHR-FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYID 220
F +V G EE + L+ H + +TG T+ G I+ + + L ++ELGGKSP+ +
Sbjct: 195 FNLVHGFGEEAGKALVAHPDVKAVSFTGETATGSIIMRNGADTLKRFSMELGGKSPVIVF 254
Query: 221 SSVNIELAVRRFLWGKCINAGQTCIAPDYIL 251
++E A+ ++ G+ C A +L
Sbjct: 255 DDADLERALDAVVFMIFSFNGERCTASSRLL 285
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 98.0 bits (244), Expect = 8e-22
Identities = 86/266 (32%), Positives = 118/266 (44%), Gaps = 12/266 (4%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V AR FD G K YE R R L + L E++ +LA D K +++ E+
Sbjct: 101 VAAARKAFDEGPWPKMTAYE-RSRILLRFADLLEKHNDELAALETWDNGKPYEQSAKAEL 159
Query: 65 EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLP 124
A R + W A+ V +P GV I WN+PL +
Sbjct: 160 PMFARLFR----YYAGWADKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFAWK 215
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTELLKHR-F 181
A+A GN ++LK +E P SA A+LL + L VV G G L H
Sbjct: 216 VGPALACGNTIVLKTAEQTPLSALYAAKLLHEAGLPPGVLNVVSGFGPTAGAALASHMDV 275
Query: 182 DYIFYTGSTSVGKIVRQ-AANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINA 240
D + +TGST GKIV + AA +L PVTLELGGKSP + +++ AV + N
Sbjct: 276 DKLAFTGSTDTGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQ 335
Query: 241 GQTCIAPDYILCSRQVQAQILNQAKA 266
GQ C A +V + + +AKA
Sbjct: 336 GQCCCAGSRTFVHERVYDEFVEKAKA 361
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 97.6 bits (244), Expect = 8e-22
Identities = 78/271 (28%), Positives = 126/271 (46%), Gaps = 21/271 (7%)
Query: 14 TFDSGKSK----PYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLAN 69
+D+G+ P E R L + L +EN++++AN L ++ K ++A L E++ +
Sbjct: 47 AYDAGRGWWPTMPLEERIDCLHKFADLLKENKEEVANLLMWEIGKTLKDA-LKEVDRTID 105
Query: 70 DVRNTLNHLKQWMTPEKPGKDIANMLDGVY--IYPDPYGVCLIIGAWNYPLQLSLLPAAG 127
+R+T+ LK+ PG D G + +P GV L IG +NYPL L++
Sbjct: 106 YIRDTIEELKRLDGDSLPG-DWFPGTKGKIAQVRREPLGVVLAIGPFNYPLNLTVSKLIP 164
Query: 128 AIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTE-LLKH-R 180
A+ GN V+ KP+ +AE PK VV G E + L+ H R
Sbjct: 165 ALIMGNTVVFKPATQGVLLGIPLAEAFHDAGFPK----GVVNVVTGRGREIGDPLVTHGR 220
Query: 181 FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINA 240
D I +TGST VG +++ + + LELGGK P + ++ELA + + G +
Sbjct: 221 IDVISFTGSTEVGNRLKKQH--PMKRLVLELGGKDPAIVLPDADLELAAKEIVKGALSYS 278
Query: 241 GQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
GQ C A +L V +++ K +
Sbjct: 279 GQRCTAIKRVLVHESVADELVELLKEEVAKL 309
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 97.5 bits (243), Expect = 9e-22
Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 15/216 (6%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
D A++ + GK+ E R L ++ E N + LA A D K +E
Sbjct: 45 DAAHAAKEAW--GKTSVAE-RANILNKIADRMEANLEMLAVAETWDNGKPVRET------ 95
Query: 66 FLANDVRNTLNHLKQWMTPEKPGKDIANMLDG---VYIYPDPYGVCLIIGAWNYPLQLSL 122
LA D+ ++H + + + + + +D Y + +P GV I WN+PL ++
Sbjct: 96 -LAADIPLAIDHFRYFAGCIRAQEGSISEIDENTVAYHFHEPLGVVGQIIPWNFPLLMAT 154
Query: 123 LPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLG-GVEETTELLKH-R 180
A A+AAGN V+LKP+E PAS ++ EL+ L VV G G+E L R
Sbjct: 155 WKLAPALAAGNCVVLKPAEQTPASILVLMELIGDLLPPGVVNVVNGFGLEAGKPLASSKR 214
Query: 181 FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSP 216
+ +TG T+ G+++ Q A+E++ PVTLELGGKSP
Sbjct: 215 IAKVAFTGETTTGRLIMQYASENIIPVTLELGGKSP 250
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 96.7 bits (241), Expect = 2e-21
Identities = 75/274 (27%), Positives = 124/274 (45%), Gaps = 17/274 (6%)
Query: 8 VQNARDTFDS--GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
V +A F S K+ P E R R L +L L E++ ++LA K + FE+
Sbjct: 43 VASAWRAFVSAWAKTTPAE-RGRILLRLADLIEQHGEELAQLETLCSGKSIHLSRAFEVG 101
Query: 66 FLANDVRNTLNHLKQWMTPEKPGKDIANMLDGV-------YIYPDPYGVCLIIGAWNYPL 118
AN +R + W T + G+ +A + + + +P GV I WN+ +
Sbjct: 102 QSANFLR----YFAGWAT-KINGETLAPSIPSMQGERYTAFTRREPVGVVAGIVPWNFSV 156
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTELL 177
+++ A+A G +++KPSE P + +AEL + + + VV G +L+
Sbjct: 157 MIAVWKIGAALATGCTIVIKPSEFTPLTLLRVAELAKEAGIPDGVLNVVNGKGAVGAQLI 216
Query: 178 KH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
H + +TGS + GK + + A LT VTLELGGK+ +I+ V L
Sbjct: 217 SHPDVAKVSFTGSVATGKKIGRQAASDLTRVTLELGGKNAAAFLKDADIDWVVEGLLTAG 276
Query: 237 CINAGQTCIAPDYILCSRQVQAQILNQAKAVLDS 270
++ GQ C AP+ R +++ + K L S
Sbjct: 277 FLHQGQVCAAPERFYVHRSKFDELVTKLKQALSS 310
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 93.4 bits (233), Expect = 2e-20
Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAP----ASAKIMAELLPKY-L 158
P GV +I A+N+P+ + AA A+ GNVV+ KPS P A KI+A +L K L
Sbjct: 132 PLGVVGVITAFNFPVAVWGWNAAIALVCGNVVVWKPSPTTPLTAIAVTKIVARVLEKNGL 191
Query: 159 DNDTFQVVLGGVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPL 217
+V GG + L+K R + +TGST+VG+ V QA LELGG + +
Sbjct: 192 PGAIASLVCGGADVGEALVKDPRVPLVSFTGSTAVGRQVGQAVAARFGRSLLELGGNNAI 251
Query: 218 YIDSSVNIELAVRRFLWGKCINAGQTC 244
+ +++LAVR L+ AGQ C
Sbjct: 252 IVMEDADLDLAVRAVLFAAVGTAGQRC 278
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 93.4 bits (232), Expect = 3e-20
Identities = 76/261 (29%), Positives = 112/261 (42%), Gaps = 24/261 (9%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA---VLFEI 64
+Q A F++ K E R L + + + + + L ++ K EA V I
Sbjct: 75 LQAAAKAFEAWKKTDPEERAAILFKAAAIVRRRRHEFSALLVKEVGKPWNEADAEVAEAI 134
Query: 65 EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLP 124
+F+ R + K + G+ Y+Y P GV ++I WN+P + +
Sbjct: 135 DFMEYYARQMIELAKGKPVNSREGET------NQYVY-TPTGVTVVISPWNFPFAIMVGM 187
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTELLKH-RF 181
I GN V+LKP+E AP A E+L + L Q V G G E L+ H +
Sbjct: 188 TVAPIVTGNCVVLKPAEAAPVIAAKFVEILEEAGLPKGVVQFVPGSGSEVGDYLVDHPKT 247
Query: 182 DYIFYTGSTSVG-KIVRQAA-----NEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWG 235
I +TGS VG +I +AA +HL V E+GGK + +D +IELA +
Sbjct: 248 SLITFTGSREVGTRIFERAAKVQPGQKHLKRVIAEMGGKDTVIVDEDADIELAAQSAFTS 307
Query: 236 KCINAGQTCIAPDYILCSRQV 256
AGQ C A SR V
Sbjct: 308 AFGFAGQKCSA-----GSRAV 323
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 91.9 bits (228), Expect = 7e-20
Identities = 88/286 (30%), Positives = 126/286 (44%), Gaps = 41/286 (14%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V AR F+ G S P + R+ L +L L E + ++LA D K + ++ +I
Sbjct: 63 VSAARGVFERGDWSLSSPAK-RKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDI 121
Query: 65 EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVY-------------IYPDPYGVCLII 111
A +R W A +D VY I +P GV I
Sbjct: 122 PGAARAIR--------WY---------AEAIDKVYGEVATTSSHELAMIVREPVGVIAAI 164
Query: 112 GAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-G 169
WN+PL L+ A+AAGN VILKPSE +P SA +A L + L + VV G G
Sbjct: 165 VPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFG 224
Query: 170 VEETTELLKH-RFDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSP--LYIDSSVNI 225
E L +H D I +TGST GK +++ A + ++ V LE GGKS ++ D ++
Sbjct: 225 HEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCP-DL 283
Query: 226 ELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
+ A G N GQ CIA +L + + L K +W
Sbjct: 284 QQAASATAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNW 329
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 90.5 bits (225), Expect = 2e-19
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 102 PDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPK 156
P GV I WN+PL + A+A GN V+LKP+E P +A + AE+ LP
Sbjct: 145 WKPVGVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTPLTALLFAEICAEAGLPP 204
Query: 157 YLDNDTFQVVLGGVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKS 215
+V G + L H D + +TGST VG+ +R+A ++LELGGKS
Sbjct: 205 ----GVLNIVTGNGSFGSALANHPGVDKVAFTGSTEVGRALRRATAGTGKKLSLELGGKS 260
Query: 216 PLYIDSSVNIELAVRRFLWGKCINAGQTCIA 246
P + +++ AV + N GQ C A
Sbjct: 261 PFIVFDDADLDSAVEGIVDAIWFNQGQVCCA 291
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 90.6 bits (225), Expect = 2e-19
Identities = 74/259 (28%), Positives = 117/259 (45%), Gaps = 22/259 (8%)
Query: 5 GDLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V AR F + E R +Q+ L EE ++ LA +A + K E E+
Sbjct: 38 EAAVAAARAAFPAWARLSLEERIAVVQRFAALLEERKEALARVIARETGKPLWET-RTEV 96
Query: 65 EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGV-YIYPDPYGVCLIIGAWNYPLQLS-- 121
+ V ++ E+ G+ M DG + P+GV + G +N+P L
Sbjct: 97 ASMIGKVAISIKAYH-----ERTGESENPMPDGRAVLRHRPHGVVAVFGPYNFPGHLPNG 151
Query: 122 -LLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTELLKH 179
++PA + AGN V+ KPSE+ P A+ +L K L +V G E L H
Sbjct: 152 HIVPA---LLAGNTVVFKPSELTPWVAEETVKLWEKAGLPAGVLNLVQGARETGVALAAH 208
Query: 180 R-FDYIFYTGSTSVGKIV-RQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
D + +TGS++ G ++ RQ A + LE+GG +PL +D +I+ AV +
Sbjct: 209 PDIDGLLFTGSSNTGHLLHRQFAGRPEKILALEMGGNNPLIVDEVADIDAAVHLIIQSAF 268
Query: 238 INAGQTCIAPDYILCSRQV 256
I+AGQ C C+R++
Sbjct: 269 ISAGQRCT------CARRL 281
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 90.0 bits (224), Expect = 2e-19
Identities = 77/260 (29%), Positives = 127/260 (48%), Gaps = 30/260 (11%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V+ AR F + +E R+ +++ L EEN+++LA +A + K EA E+ +
Sbjct: 43 VRAARAAFPAWARLSFEERQAIVERFAALLEENKEELAEVIARETGKPLWEA-ATEVTAM 101
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGV-YIYPDPYGVCLIIGAWNYPLQLS---LL 123
N + ++ E+ G+ + M DG + P+GV + G +N+P L ++
Sbjct: 102 INKIAISIQAYH-----ERTGEKRSEMADGAAVLRHRPHGVVAVFGPYNFPGHLPNGHIV 156
Query: 124 PAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTELLK 178
PA + AGN V+ KPSE+ P A++ +L LP +V GG E L
Sbjct: 157 PA---LLAGNTVVFKPSELTPWVAELTVKLWQQAGLPA----GVLNLVQGGRETGKALAA 209
Query: 179 HR-FDYIFYTGSTSVGKIV-RQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
H D + +TGS + G ++ RQ A + + LE+GG +PL ID +I+ AV +
Sbjct: 210 HPDIDGLLFTGSANTGYLLHRQFAGQPEKILALEMGGNNPLVIDEVADIDAAVHLIIQSA 269
Query: 237 CINAGQTCIAPDYILCSRQV 256
I+AGQ C C+R++
Sbjct: 270 FISAGQRCT------CARRL 283
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 88.4 bits (220), Expect = 9e-19
Identities = 81/258 (31%), Positives = 116/258 (44%), Gaps = 32/258 (12%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQ-------E 58
+ A F + P E R L++ L E N+ +L AA+ K E
Sbjct: 73 AALAIAAAAFAGWSATPVEERAEILEKAADLLEANRGELIALAAAEAGKTLADADAEVRE 132
Query: 59 AVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPL 118
A+ F + A R + PE PG L+G+ + GV + I WN+PL
Sbjct: 133 AIDF-CRYYAAQARELFSD------PELPGPT--GELNGLEL--HGRGVFVCISPWNFPL 181
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELL-----PKYLDNDTFQVVLGGVEET 173
+ A A+AAGN VI KP+E P A ELL P+ D Q+V G EE
Sbjct: 182 AIFTGQIAAALAAGNTVIAKPAEQTPLIAARAVELLHEAGVPR----DVLQLVPGDGEEI 237
Query: 174 TE-LLKH-RFDYIFYTGSTSVGKIVRQAANEH---LTPVTLELGGKSPLYIDSSVNIELA 228
E L+ H R D + +TGST K++ +A E + P+ E GGK+ + +DS+ E A
Sbjct: 238 GEALVAHPRIDGVIFTGSTETAKLINRALAERDGPILPLIAETGGKNAMIVDSTALPEQA 297
Query: 229 VRRFLWGKCINAGQTCIA 246
V+ + +AGQ C A
Sbjct: 298 VKDVVQSAFGSAGQRCSA 315
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 86.1 bits (214), Expect = 5e-18
Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 98 VYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY 157
YI P GV ++I WN+P + AI AGN V+LKP+ P A E+L +
Sbjct: 168 FYI---PLGVGVVISPWNFPFAIMAGMTLAAIVAGNTVLLKPASDTPVIAAKFVEVLEEA 224
Query: 158 -LDNDTFQVVLGGVEETTELL----KHRFDYIFYTGSTSVG-KIVRQAA-----NEHLTP 206
L V G E + L K RF I +TGS VG +I +AA L
Sbjct: 225 GLPAGVVNFVPGSGSEVGDYLVDHPKTRF--ITFTGSREVGLRIYERAAKVQPGQIWLKR 282
Query: 207 VTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR-----QVQAQIL 261
V E+GGK + +D +++LA + +GQ C A CSR V ++L
Sbjct: 283 VIAEMGGKDAIVVDEDADLDLAAESIVASAFGFSGQKCSA-----CSRAIVHEDVYDEVL 337
Query: 262 NQAKA 266
+
Sbjct: 338 EKVVE 342
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 84.4 bits (209), Expect = 2e-17
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 99 YIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL----- 153
Y P GV +I WN PL L A+A GN V++KPSE P +A ++ E+
Sbjct: 134 YAVRKPLGVVGVISPWNLPLLLMTWKVGPALACGNTVVVKPSEETPGTATLLGEVMNAVG 193
Query: 154 LPKYLDNDTFQVVLG-GVEETTELL-KHR-FDYIFYTGSTSVGKIVRQAANEHLTPVTLE 210
+PK + VV G G + E L +H D I +TG T G + +AA + + PV+ E
Sbjct: 194 VPK----GVYNVVHGFGPDSAGEFLTRHPGVDAITFTGETRTGSAIMKAAADGVKPVSFE 249
Query: 211 LGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQV 256
LGGK+ + + + + AV L +N GQ C L + +V
Sbjct: 250 LGGKNAAIVFADCDFDAAVAGILRSAFLNTGQVC------LGTERV 289
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 84.2 bits (208), Expect = 2e-17
Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 12/244 (4%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA---VLFEI 64
V +AR+TF + R L + L +E++ ++A + A+ K +A V +
Sbjct: 44 VASARETFLTWGQTSLAQRTSVLLRYQALLKEHRDEIAELITAEHGKTHSDALGDVARGL 103
Query: 65 EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLP 124
E + + +N L + T + + VY P GVC I +N+P + L
Sbjct: 104 EVV--EHACGVNSLLKGETSTQVATRV-----DVYSIRQPLGVCAGITPFNFPAMIPLWM 156
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTELLKH-RFD 182
AIA GN +LKPSE P++A +AEL + + VV G E LL+H
Sbjct: 157 FPIAIACGNTFVLKPSEKVPSAAVKLAELFSEAGAPDGVLNVVHGDKEAVDRLLEHPDVK 216
Query: 183 YIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQ 242
+ + GST +G+ + + H V G K+ + + + + A + AGQ
Sbjct: 217 AVSFVGSTPIGRYIHTTGSAHGKRVQALGGAKNHMVVMPDADKDAAADALVGAAYGAAGQ 276
Query: 243 TCIA 246
C+A
Sbjct: 277 RCMA 280
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 82.6 bits (204), Expect = 6e-17
Identities = 77/259 (29%), Positives = 119/259 (45%), Gaps = 30/259 (11%)
Query: 26 RRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPE 85
R L++ L E+Q DLA + + K EA EI + A+ + +W E
Sbjct: 72 RANILRRWFNLMMEHQDDLARLMTLEQGKPLAEAK-GEISYAASFI--------EWFAEE 122
Query: 86 KPGKDI-ANMLDG------VYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILK 138
GK I + + G + + P GV I WN+P + A A+AAG ++LK
Sbjct: 123 --GKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK 180
Query: 139 PSEVAPASAKIMAELLPKY-LDNDTFQVVLG-----GVEETTELLKHRFDYIFYTGSTSV 192
P+ P SA +AEL + + F VV G G E T+ L + + TGST +
Sbjct: 181 PASQTPFSALALAELAIRAGIPAGVFNVVTGSAGAVGGELTSNPLVRKLSF---TGSTEI 237
Query: 193 GKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILC 252
G+ + + + + V+LELGG +P + +++ AV L K NAGQTC+ + +
Sbjct: 238 GRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYV 297
Query: 253 SRQVQ---AQILNQAKAVL 268
V A+ L QA + L
Sbjct: 298 QDGVYDRFAEKLQQAVSKL 316
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 82.1 bits (203), Expect = 1e-16
Identities = 66/240 (27%), Positives = 98/240 (40%), Gaps = 8/240 (3%)
Query: 11 ARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLAND 70
A F ++ + R R L E +A + ++ K A E A
Sbjct: 32 AHARFRDYRTTTFAQRARWANAAADLLEAEADQVAALMTLEMGKTLASAKA-EALKCAKG 90
Query: 71 VRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIA 130
R H + + E P A Y+ P GV L + WN+PL + AA A+
Sbjct: 91 FRYYAEHAEALLADE-PADAAAVGASRAYVRYQPLGVVLAVMPWNFPLWQVVRFAAPALM 149
Query: 131 AGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVL---GGVEETTELLKHRFDYIFY 186
AGNV +LK + P +A +A+L + + FQ +L G VE L R
Sbjct: 150 AGNVGLLKHASNVPQTALYLADLFRRAGFPDGCFQTLLVGSGAVEAI--LRDPRVAAATL 207
Query: 187 TGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIA 246
TGS G+ V A + + LELGG P + S +++ A + + N GQ+CIA
Sbjct: 208 TGSEPAGRAVAAIAGDEIKKTVLELGGSDPFIVMPSADLDRAAETAVTARVQNNGQSCIA 267
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 81.8 bits (202), Expect = 1e-16
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 98 VYIYPDPY-GVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPK 156
V+ +P GV I +N+P+ A AIA N +++KPSE P SA +A++L +
Sbjct: 132 VFTQREPLLGVISAITPFNHPMNQVAHKIAPAIATNNRMVVKPSEKTPLSALYLADILYE 191
Query: 157 Y-LDNDTFQVVLGGVEE-TTELLKHRF-DYIFYTGSTSVGKIVRQAANEHLTPVTLELGG 213
L QVV G E EL+ + D + +TG ++GK + AA LELGG
Sbjct: 192 AGLPPQMLQVVTGDPREIADELITNPHVDLVTFTGGVAIGKYI--AARAGYRRQVLELGG 249
Query: 214 KSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQV 256
PL + +++ A + G N+GQ C A +L V
Sbjct: 250 NDPLIVMEDADLDRAADLAVKGSYKNSGQRCTAVKRMLVQESV 292
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 81.5 bits (201), Expect = 1e-16
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPK--YLDND 161
PYG L+IGA+N+PL + LL AGA+A GN VI+KP +IM LL L +
Sbjct: 100 PYGPVLVIGAFNFPLWIPLLQLAGALAMGNPVIVKPHTAVSIVMQIMVRLLHYAGLLPPE 159
Query: 162 TFQVVLGGVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYID 220
++ G + LL H + +TGS+ V + + + + LEL G + +
Sbjct: 160 DVTLINGDGKTMQALLLHPNPKMVLFTGSSRVAEKLA--LDAKQARIYLELAGFNWKVLG 217
Query: 221 SSVN-IELAVRRFLWGKCINAGQTCIAPDYIL 251
++ + + +GQ C A +
Sbjct: 218 PDAQAVDYVAWQCVQDMTACSGQKCTAQSMLF 249
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 81.0 bits (200), Expect = 3e-16
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
Query: 103 DPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLD--N 160
+ GV I WN+P Q++L A+AAGN V+LKP+ P A ++ EL+ ++ D
Sbjct: 140 EAVGVVGAITPWNFPHQINLAKLGPALAAGNTVVLKPAPDTPWCAAVLGELIAEHTDFPP 199
Query: 161 DTFQVVLGGVEETTELLKH--RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLY 218
+V LL R D + +TGST+ G+ V A L V LELGGKS
Sbjct: 200 GVVNIVTSSDHRLGALLAKDPRVDMVSFTGSTATGRAVMADAAATLKKVFLELGGKSAFI 259
Query: 219 IDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
+ ++ A + C++AGQ C ++ R + + A A + S
Sbjct: 260 VLDDADLAAACSMAAFTVCMHAGQGCAITTRLVVPRARYDEAVAAAAATMGSI 312
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 80.8 bits (199), Expect = 3e-16
Identities = 58/182 (31%), Positives = 82/182 (45%), Gaps = 5/182 (2%)
Query: 100 IYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLD 159
I DP GV I WNYPL ++ A A+AAGN V+LKPSE+ P +A +AEL
Sbjct: 133 IRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFP 192
Query: 160 NDTFQVVLG-GVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPL 217
++ G G L H + + TGS + G+ + + +ELGGK+P+
Sbjct: 193 AGVVNILFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHILSHTAPSIKRTHMELGGKAPV 252
Query: 218 YIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI---LNQAKAVLDSWYTE 274
+ +I+ V NAGQ C A I R + + L A A L S +
Sbjct: 253 IVFDDADIDAVVEGVRTFGFYNAGQDCTAACRIYAQRGIYDTLVEKLGAAVATLKSGAPD 312
Query: 275 QE 276
E
Sbjct: 313 DE 314
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 79.9 bits (197), Expect = 5e-16
Identities = 69/275 (25%), Positives = 104/275 (37%), Gaps = 26/275 (9%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA---VLFEI 64
++ A F + K P E R R L + L +++L L ++ K+ EA V I
Sbjct: 61 LEAAWAAFKTWKDWPQEDRARLLLKAADLLRRRRRELIATLTYEVGKNWVEAIDDVAEAI 120
Query: 65 EFLANDVRNTLNHL-KQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLL 123
+F+ R L PG+D + G+ G ++I WN+P+ +
Sbjct: 121 DFIRYYARAALRLRYPAVEVVPYPGEDNESFYVGL-------GAGVVISPWNFPVAIFTG 173
Query: 124 PAAGAIAAGNVVILKPSEVAP-ASAKIMAELLPKYLDNDTFQVVLG-GVEETTELLKH-R 180
+A GN VI KP+E A K+ Q + G G E L +H R
Sbjct: 174 MIVAPVAVGNTVIAKPAEDAVVVGYKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLTEHER 233
Query: 181 FDYIFYTGSTSVGK-IVRQAANEH-----LTPVTLELGGKSPLYIDSSVNIELAVRRFLW 234
I +TGS GK I AA + +E GGK+ + +D + + EL V +
Sbjct: 234 IRGINFTGSLETGKKIYEAAARLAPGQTWFKRLYVETGGKNAIIVDETADFELVVEGVVV 293
Query: 235 GKCINAGQTCIAPDYILCSRQ-VQAQILNQAKAVL 268
GQ C A SR + L
Sbjct: 294 SAFGFQGQKCSA-----ASRLILTQGAYEPVLERL 323
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 72.9 bits (179), Expect = 8e-14
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 6/167 (3%)
Query: 103 DPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAP----ASAKIMAELLPKY- 157
+P G+ +I A+N+P + A A+ GN V+ K + P A K++AE+L K
Sbjct: 153 NPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIAMTKLVAEVLEKNN 212
Query: 158 LDNDTFQVVLGGVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSP 216
L F GG E + K R + +TGS+ VG +V+Q N LEL G +
Sbjct: 213 LPGAIFTSFCGGAEIGEAIAKDTRIPLVSFTGSSKVGLMVQQTVNARFGKCLLELSGNNA 272
Query: 217 LYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ 263
+ + +I+LAVR L+ AGQ C +L + +L Q
Sbjct: 273 IIVMDDADIQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYDDVLEQ 319
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 69.7 bits (171), Expect = 1e-12
Identities = 69/257 (26%), Positives = 103/257 (40%), Gaps = 46/257 (17%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDL------------ANALAADLRKH 55
++ A + P R L++ L E L +NA+A ++R
Sbjct: 156 LEAAVAAAPIWSATPPAERAAILERAADLMEAQMPQLMGLLVREAGKTLSNAIA-EVR-- 212
Query: 56 KQEAVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWN 115
EAV F + + A R+T +L P G + I WN
Sbjct: 213 --EAVDF-LRYYAGQARDTFGNLTH----------------------RPLGPVVCISPWN 247
Query: 116 YPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETT 174
+PL + A A+AAGN V+ KP+E P A LL + + Q++ G E
Sbjct: 248 FPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVRLLHEAGVPPGVLQLLPGRGETVG 307
Query: 175 ELL--KHRFDYIFYTGSTSVGKIV-RQAANEHLTPVTL--ELGGKSPLYIDSSVNIELAV 229
L R + +TGST V +++ RQ A P+ L E GG++ + +DSS E V
Sbjct: 308 AALTADARVAGVMFTGSTEVARLIQRQLAKRQGRPIPLIAETGGQNAMIVDSSALAEQVV 367
Query: 230 RRFLWGKCINAGQTCIA 246
L +AGQ C A
Sbjct: 368 ADVLASAFDSAGQRCSA 384
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 68.8 bits (168), Expect = 2e-12
Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDT 162
GV + I WN+PL + + A+AAGN VI KP+E A EL+ + T
Sbjct: 160 SRGVFVCISPWNFPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVELMQEAGFPAGT 219
Query: 163 FQVVLG-GVEETTELLKH-RFDYIFYTGSTSVGKIVRQA-ANEHLTPVTL--ELGGKSPL 217
Q++ G G + L R + +TGST V +++ Q A PV L E GG++ +
Sbjct: 220 IQLLPGRGADVGAALTSDPRIAGVAFTGSTEVAQLINQTLAQREDAPVPLIAETGGQNAM 279
Query: 218 YIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQ 255
+DS+ E VR L +AGQ C A +LC ++
Sbjct: 280 IVDSTALPEQVVRDVLRSAFDSAGQRCSALR-VLCVQE 316
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 64.7 bits (158), Expect = 4e-11
Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 16/233 (6%)
Query: 22 PYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQW 81
+E R L++L L EE +LA +A + K +A + E+ + V + L Q
Sbjct: 43 AHE-RIAILERLADLMEERADELALLIAREGGKPLVDAKV-EVTRAIDGVELAADELGQL 100
Query: 82 MTPEKPGKDIANMLDG--VYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKP 139
E P + G + +P GV + I A+N+PL L + A AIAAG VI+KP
Sbjct: 101 GGREIP-MGLTPASAGRIAFTTREPIGVVVAISAFNHPLNLIVHQVAPAIAAGCPVIVKP 159
Query: 140 SEVAPASAKIMAELLPKY-LDNDTFQVVLGGVEETTELL--KHRFDYIFYTGSTSVGKIV 196
+ P S +LL + L Q V E L R + + GS VG ++
Sbjct: 160 ALATPLSCLAFVDLLHEAGLPEGWCQAVPCE-NAVAEKLVTDPRVAFFSFIGSARVGWML 218
Query: 197 RQAANEHLTPVT---LELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIA 246
R L P T LE GG +P+ +D S +++ + + G +AGQ C++
Sbjct: 219 RS----KLAPGTRCALEHGGAAPVIVDRSADLDAMIPPLVKGGFYHAGQVCVS 267
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 64.5 bits (157), Expect = 4e-11
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTF 163
P G L I WN+PL + A + AGN +LK + A+++A++ + D
Sbjct: 126 PLGTILAIMPWNFPLWQVMRGAVPILLAGNGYLLKHAPNVMGCAQLIAQV---FKDAGIP 182
Query: 164 QVVLGGVEETTELLKH-----RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLY 218
Q V G + + + R + TGS G + A L LELGG P
Sbjct: 183 QGVYGWLNADNDGVSQMINDSRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDPFI 242
Query: 219 IDSSVNIELAVRRFLWGKCINAGQTCIA 246
+ + ++ELAV+ + G+ N GQ C A
Sbjct: 243 VLNDADLELAVKAAVAGRYQNTGQVCAA 270
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 61.7 bits (149), Expect = 5e-10
Identities = 63/273 (23%), Positives = 117/273 (42%), Gaps = 17/273 (6%)
Query: 4 FGDLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFE 63
F V A+ F ++ P R+R + + L +N LA + + K +++
Sbjct: 153 FKAAVSAAKQAFPLWRNTPITTRQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDS---- 208
Query: 64 IEFLANDVRNTLNHLKQ--WMTPEKPGKDIANMLDGVYIYP--DPYGVCLIIGAWNYPLQ 119
D+ L ++ M + G+ + N+ +GV Y +P GVC I +N+P
Sbjct: 209 ----HGDIFRGLEVVEHACGMATLQMGEYLPNVSNGVDTYSIREPLGVCAGICPFNFPAM 264
Query: 120 LSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKH 179
+ L A+ GN ILKPSE P ++ I+AEL + D ++ G +T +
Sbjct: 265 IPLWMFPVAVTCGNTFILKPSEKDPGASVILAELAMEAGLPDGVLNIVHGTNDTVNAICD 324
Query: 180 RFDY--IFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
D + + GS + G + A + +G K+ + NI+ + L
Sbjct: 325 DEDIRAVSFVGSNTAGMHIYARAAAKGKRIQSNMGAKNHGLVLPDANIDATLNALLAAGF 384
Query: 238 INAGQTCIAPDYILC---SRQVQAQILNQAKAV 267
AGQ C+A ++ ++ + +++ +AKA+
Sbjct: 385 GAAGQRCMALSTVVFVGDAKSWEDKLVERAKAL 417
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 59.4 bits (144), Expect = 2e-09
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYL 158
P GV L I +NYP+ L++ A A+ AGN V+LKP +A M PK L
Sbjct: 158 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNAVVLKPPTQGAVAALHMVHCFHLAGFPKGL 217
Query: 159 DNDTFQVVLG-GVEETTELLKHR-FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSP 216
V G G E L H + I +TG + I ++A + P+ +ELGGK
Sbjct: 218 ----ISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAG---MVPLQMELGGKDA 270
Query: 217 LYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA 266
+ +++LA + G +GQ C A +L V ++ + A
Sbjct: 271 CIVLEDADLDLAAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNA 320
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 57.6 bits (139), Expect = 5e-09
Identities = 38/175 (21%), Positives = 61/175 (34%), Gaps = 10/175 (5%)
Query: 97 GVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPK 156
Y+ P GV + I PL + A IA N I +P AP + + +A L
Sbjct: 93 ETYVRAFPIGVTMHILPSTNPL-SGITSALRGIATRNQCIFRPHPSAPFTNRALALLFQA 151
Query: 157 YLDNDTFQVVLG-----GVEETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLE 210
++++ E ELL H + D I TG + + PV
Sbjct: 152 ADAAHGPKILVLYVPHPSDELAEELLSHPKIDLIVATGGRDAVDAAVKHSPH--IPVIGF 209
Query: 211 LGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAK 265
G SP+ +D + + E A K + C + + V + + K
Sbjct: 210 GAGNSPVVVDETADEERASGSVHDSKFFD-QNACASEQNLYVVDDVLDPLYEEFK 263
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 58.3 bits (142), Expect = 6e-09
Identities = 69/261 (26%), Positives = 107/261 (40%), Gaps = 54/261 (20%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDL------------ANALAADLRKH 55
+ A+ F + P R L++ L E + +L ANA+A ++R
Sbjct: 596 LAAAQAAFPEWSATPAAERAAILERAADLMEAHMPELFALAVREAGKTLANAIA-EVR-- 652
Query: 56 KQEAVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWN 115
EAV F + + A R LN KP G + I WN
Sbjct: 653 --EAVDF-LRYYAAQARRLLN-----GPGHKP-----------------LGPVVCISPWN 687
Query: 116 YPLQLSLLPAAGAIAAGNVVILKPSEVAPASA----KIMAEL-LPKYLDNDTFQVVLGGV 170
+PL + A A+ AGN V+ KP+E P A +++ E +PK D Q++ G
Sbjct: 688 FPLAIFTGQIAAALVAGNTVLAKPAEQTPLIAARAVRLLHEAGVPK----DALQLLPGDG 743
Query: 171 EETTELL--KHRFDYIFYTGSTSVGKIVRQAANEHLT-PVTL--ELGGKSPLYIDSSVNI 225
L R + +TGST V +++++ + PV L E GG++ + +DSS
Sbjct: 744 RTVGAALVADPRIAGVMFTGSTEVARLIQRTLAKRSGPPVPLIAETGGQNAMIVDSSALP 803
Query: 226 ELAVRRFLWGKCINAGQTCIA 246
E V + +AGQ C A
Sbjct: 804 EQVVADVIASAFDSAGQRCSA 824
Score = 29.1 bits (66), Expect = 7.6
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYI 184
A A+A GNV ++ A+ + L+ E F
Sbjct: 1096 LAAALATGNVAVVAADSGLAAALADLPGLV------AARIDWTQDWEAD-----DPFAGA 1144
Query: 185 FYTGSTSVGKIVRQA 199
G + VRQA
Sbjct: 1145 LLEGDAERARAVRQA 1159
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 57.7 bits (140), Expect = 1e-08
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 35/165 (21%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSE----VAPASAKIMAE------- 152
P G + I WN+PL + A A+AAGN V+ KP+E +A + +I+ E
Sbjct: 768 PLGPVVCISPWNFPLAIFTGQVAAALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAGV 827
Query: 153 --LLPKYLDNDTFQVVLGGVEET--TELLKH-RFDYIFYTGSTSVGKIV------RQAAN 201
LLP G ET L+ R + +TGST V +++ R
Sbjct: 828 VQLLP-------------GRGETVGAALVADARVRGVMFTGSTEVARLLQRNLAGRLDPQ 874
Query: 202 EHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIA 246
P+ E GG++ + +DSS E V L +AGQ C A
Sbjct: 875 GRPIPLIAETGGQNAMIVDSSALTEQVVADVLASAFDSAGQRCSA 919
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 49.9 bits (119), Expect = 2e-06
Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 38/268 (14%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQ-------LVRLYEENQQDLANALAADLRKHKQEAV 60
+Q R+ S K + +Q +V EN LA + K E
Sbjct: 7 IQQVRNLIRSAKVAQKKLANMTQEQIDKIVKAIVDAAYENAVKLAKMANEETGFGKWEDK 66
Query: 61 LFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQL 120
+ + F A V +++ +K + + V P GV + P
Sbjct: 67 VIKNVFAATIVYDSIKDMKTIGILSE------DKEKKVIEIAVPVGVVAGLIPSTNPTST 120
Query: 121 SLLPAAGAIAAGNVVILKPSEVAPA----SAKIMAELLPKY---------LDNDTFQVVL 167
++ +I A N ++ P A + K+M + + + T
Sbjct: 121 AIYKTLISIKARNAIVFSPHPNAKKCIIETVKLMRKAAEEAGAPEGAIGCITVPT----- 175
Query: 168 GGVEETTELLKHR-FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIE 226
+E T EL+K++ I TG G+ + +AA TP G P YI+ + N++
Sbjct: 176 --IEGTNELMKNKDTSLILATG----GEAMVKAAYSSGTPAIGVGPGNGPAYIERTANVK 229
Query: 227 LAVRRFLWGKCINAGQTCIAPDYILCSR 254
AVR + K + G C + I+
Sbjct: 230 KAVRDIIDSKTFDNGTICASEQSIIVEE 257
Score = 35.6 bits (82), Expect = 0.052
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 398 HSSGTIALGGDMDASDRPLYIDSSVNIELAVRRFLWGKCINAG 440
+SSGT A+G + + P YI+ + N++ AVR + K + G
Sbjct: 204 YSSGTPAIG--VGPGNGPAYIERTANVKKAVRDIIDSKTFDNG 244
Score = 35.2 bits (81), Expect = 0.084
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 313 SAPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR 353
+ P YI+ + N++ AVR + K + G C + I+
Sbjct: 217 NGPAYIERTANVKKAVRDIIDSKTFDNGTICASEQSIIVEE 257
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 49.5 bits (119), Expect = 3e-06
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAG-----AIAAGNVVILKPSEVAPASAKIMAELLPKYL 158
P G + GA N+PL S AG A+AAG V++K P +++++A + L
Sbjct: 105 PLGPVAVFGASNFPLAFS---VAGGDTASALAAGCPVVVKAHPAHPGTSELVARAIRAAL 161
Query: 159 D-----NDTFQVVLGGVEET-TELLKH-RFDYIFYTGSTSVGKIVRQAANEHLT--PVTL 209
F ++ GG E L+KH + +TGS G+ + AA P
Sbjct: 162 RATGLPAGVFSLLQGGGREVGVALVKHPAIKAVGFTGSRRGGRALFDAAAARPEPIPFYA 221
Query: 210 ELGGKSPLYI 219
ELG +P++I
Sbjct: 222 ELGSVNPVFI 231
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 49.4 bits (119), Expect = 4e-06
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 106 GVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSE----VAPASAKIMAEL-LPKYLDN 160
GV + I WN+PL + L A A+AAGN VI KP+E +A + K++ E +PK
Sbjct: 686 GVFVCISPWNFPLAIFLGQVAAALAAGNTVIAKPAEQTPLIAAEAVKLLHEAGIPK---- 741
Query: 161 DTFQVVLG-GVEETTELLKH-RFDYIFYTGSTSVGKIVRQA-ANEHLTPVTL--ELGGKS 215
D Q++ G G L R + +TGST +I+ + A V L E GG++
Sbjct: 742 DVLQLLPGDGATVGAALTADPRIAGVAFTGSTETARIINRTLAARDGPIVPLIAETGGQN 801
Query: 216 PLYIDSSVNIELAVRRFLWGKCINAGQTCIA 246
+ +DS+ E V + +AGQ C A
Sbjct: 802 AMIVDSTALPEQVVDDVVTSAFRSAGQRCSA 832
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has
domains which are members of the pfam00171 and pfam01575
families. This family includes paaN genes from
Pseudomonas, Sinorhizobium, Rhodopseudomonas,
Escherichia, Deinococcus and Corynebacterium. Another
homology family (TIGR02288) includes several other
species.
Length = 663
Score = 46.7 bits (111), Expect = 2e-05
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
Query: 97 GVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPS----EVAPASAKIMAE 152
G +I GV + I A+N+P+ L A A AG + KP+ VA A + M E
Sbjct: 137 GRHILTPKGGVAVQINAFNFPVWGLLEKFAPAFLAGVPTLAKPATPTAYVAEALVRTMVE 196
Query: 153 --LLPKYLDNDTFQVVLGGVEETTELLKHRFDYIFYTGSTSVGKIVRQAAN--EHLTPVT 208
LLP+ + Q++ G + + L HR D + +TGS + +R N E
Sbjct: 197 SGLLPE----GSLQLICGSAGDLLDHLDHR-DVVAFTGSAATADRLRAHPNVLERGIRFN 251
Query: 209 LELGGKSPLYIDSSVN-----IELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ 263
E + + +L + + I AGQ C A ++ + + +L
Sbjct: 252 AEADSLNAAILGEDATPDEPEFDLFAQEIVRELTIKAGQKCTAIRRVIVPKALLEAVLKA 311
Query: 264 AKAVL 268
+A L
Sbjct: 312 LQARL 316
>gnl|CDD|131341 TIGR02288, PaaN_2, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has a
domain which is a member of the pfam00171 family. This
family includes sequences from Burkholderia, Bordetella,
Streptomyces. Other PaaN enzymes are represented by a
separate model, TIGR02278.
Length = 551
Score = 45.6 bits (108), Expect = 4e-05
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 13/186 (6%)
Query: 77 HLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVI 136
W P+ GK+ L + P G+ L+IG +P + ++A GN V+
Sbjct: 169 ETAVWEKPQ--GKNDPLKLKKRF-TIVPRGIALVIGCSTFPTWNTYPGLFASLATGNPVL 225
Query: 137 LKPSEVA--PA--SAKIMAELLPKY-LDND--TFQVVLGGVEETTELLKH-RFDYIFYTG 188
+KP A P + ++ E+L + D + T G E L I +TG
Sbjct: 226 VKPHPGAILPLALTVQVAREVLGEAGFDPNLVTLAAFDPGHEAAQRLATDPAVRIIDFTG 285
Query: 189 STSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPD 248
S + G+ + Q A + V E G + + I+S+ + + +R + + +GQ C
Sbjct: 286 SNAFGQWLEQNARQAQ--VYTEKAGVNTVIIESTDDYKAMLRNLAFSLSLYSGQMCTTTQ 343
Query: 249 YILCSR 254
IL R
Sbjct: 344 AILVPR 349
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This
protein contains a glutamate 5-kinase (ProB, EC
2.7.2.11) region followed by a gamma-glutamyl phosphate
reductase (ProA, EC 1.2.1.41) region [Amino acid
biosynthesis, Glutamate family].
Length = 715
Score = 41.8 bits (98), Expect = 6e-04
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 104 PYGVCLIIGAWNYPLQLSLLP--AAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDND 161
P GV LI+ + + L A+ AI +GN ++LK + A S I+ +++ + +
Sbjct: 397 PIGVLLIV----FESRPDALVQIASLAIRSGNGLLLKGGKEAARSNAILHKVITEAIPIH 452
Query: 162 TFQVVLGGV---EETTELLK--HRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSP 216
+ ++G V EE +LLK D + GS K+V Q PV G
Sbjct: 453 VGKKLIGLVTSREEIPDLLKLDDVIDLVIPRGSN---KLVSQIKKSTKIPVLGHADGICH 509
Query: 217 LYIDSSVNIELAVRRFLWGKC 237
+Y+D S ++++A R KC
Sbjct: 510 VYVDKSASVDMAKRIVRDAKC 530
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 41.3 bits (97), Expect = 0.001
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 24/166 (14%)
Query: 104 PYGVCLIIG-----AWN-YP-LQLSLLPAAGAIAAGNVVILKPSEVA--PA--SAKIMAE 152
P GV L+IG WN YP L SL A GN VI+KP A P + ++ E
Sbjct: 193 PRGVALVIGCSTFPTWNGYPGLFASL-------ATGNPVIVKPHPAAILPLAITVQVARE 245
Query: 153 LLPKY-LDNDTFQVVLGGVEE--TTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVT 208
+L + D + + EE L I +TGS + G + A + V
Sbjct: 246 VLAEAGFDPNLVTLAADTPEEPIAQTLATRPEVRIIDFTGSNAFGDWLEANARQAQ--VY 303
Query: 209 LELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR 254
E G + + +DS+ +++ +R + + +GQ C P I R
Sbjct: 304 TEKAGVNTVVVDSTDDLKAMLRNLAFSLSLYSGQMCTTPQNIYVPR 349
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 39.8 bits (93), Expect = 0.003
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 15/141 (10%)
Query: 123 LPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKY-LDNDTFQVVLG-GVEETTELLKH- 179
L A A+ GN VI KPS+ A S ++ +L + L V G G + +L
Sbjct: 188 LAGAPALM-GNTVIWKPSDTAMLSNYLVMRILEEAGLPPGVINFVPGDGPLVSDTVLADP 246
Query: 180 RFDYIFYTGSTSV-----GKIVRQAANEHLTP-VTLELGGKSPLYIDSSVNIELAVRRFL 233
I +TGST ++ + H P + E GGK + S ++E V +
Sbjct: 247 DLAGIHFTGSTPTFKHLWKQVAQNLDRYHNFPRIVGETGGKDFHVVHPSADVEHVVSGTI 306
Query: 234 WGKCINAGQTCIAPDYILCSR 254
G GQ C A CSR
Sbjct: 307 RGAFEYQGQKCSA-----CSR 322
>gnl|CDD|143400 cd07081, ALDH_F20_ACDH_EutE-like, Coenzyme A acylating aldehyde
dehydrogenase (ACDH), Ethanolamine utilization protein
EutE, and related proteins. Coenzyme A acylating
aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent
acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10),
functions as a single enzyme (such as the Ethanolamine
utilization protein, EutE, in Salmonella typhimurium) or
as part of a multifunctional enzyme to convert
acetaldehyde into acetyl-CoA. The E. coli
aldehyde-alcohol dehydrogenase includes the functional
domains, alcohol dehydrogenase (ADH), ACDH, and
pyruvate-formate-lyase deactivase; and the Entamoeba
histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1)
includes the functional domains ADH and ACDH, and may be
critical enzymes in the fermentative pathway.
Length = 439
Score = 39.2 bits (91), Expect = 0.005
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 27/163 (16%)
Query: 97 GVYIYPDPYGV-CLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELL- 154
G I +P GV I + N P + + ++ N +I P A + A LL
Sbjct: 88 GTLIIAEPIGVVASITPSTN-PTSTVIFKSLISLKTRNSIIFSPHPRAKKVTQRAATLLL 146
Query: 155 --------PK----YLDNDTFQVVLGGVEETTELLKH-RFDYIFYTGSTSVGKIVRQAAN 201
P+ ++DN + +E L+K + TG +V K AA
Sbjct: 147 QAAVAAGAPENLIGWIDNPS-------IELAQRLMKFPGIGLLLATGGPAVVK----AAY 195
Query: 202 EHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTC 244
P G +P+ ID + +I+ AV+ + K + G C
Sbjct: 196 SSGKPAIGVGAGNTPVVIDETADIKRAVQSIVKSKTFDNGVIC 238
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 38.2 bits (90), Expect = 0.008
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 128 AIAAGNVVILKPSEVAPAS----AKIMAELLPKY-LDNDTFQVV-LGGVEETTELLKHR- 180
A+ N +I P A AKIM E Q + +E T EL+KH
Sbjct: 119 ALKTRNAIIFSPHPRAKKCSIEAAKIMREAAVAAGAPEGLIQWIEEPSIELTQELMKHPD 178
Query: 181 FDYIFYTGSTSVGKIVRQAANEHLTPVTLELG---GKSPLYIDSSVNIELAVRRFLWGK 236
D I TG + V+ AA P +G G P YID + +I+ AV+ + K
Sbjct: 179 VDLILATGGPGM---VK-AAYSSGKPA---IGVGPGNVPAYIDETADIKRAVKDIILSK 230
Score = 30.5 bits (70), Expect = 1.9
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 398 HSSGTIALGGDMDASDRPLYIDSSVNIELAVRRFLWGK 435
+SSG A+G + P YID + +I+ AV+ + K
Sbjct: 195 YSSGKPAIGVG--PGNVPAYIDETADIKRAVKDIILSK 230
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 37.2 bits (87), Expect = 0.017
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 32/167 (19%)
Query: 123 LPAAGAIAAGNVVILKPSEVAPASA----KIMAEL-LPKYLDNDTFQVVLGGVEETTE-L 176
L A A+ GNVV+ KPS+ A S KI+ E LP V G + +
Sbjct: 189 LAGAPALM-GNVVLWKPSDTAVLSNYLVYKILEEAGLPP----GVINFVPGDGPVVGDTV 243
Query: 177 LKHR-FDYIFYTGSTSVGK-IVRQAANEHLTPVTL-----ELGGKSPLYIDSSVNIELAV 229
L + +TGST K + +Q T E GGK+ + S +++ V
Sbjct: 244 LASPHLAGLHFTGSTPTFKSLWKQIGENLDRYRTYPRIVGETGGKNFHLVHPSADVDSLV 303
Query: 230 RRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKAV 267
+ G GQ C A SR +V+ ++L + K +
Sbjct: 304 TATVRGAFEYQGQKCSA-----ASRAYVPESLWPEVKERLLEELKEI 345
>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
transport and metabolism].
Length = 417
Score = 36.8 bits (86), Expect = 0.020
Identities = 59/269 (21%), Positives = 96/269 (35%), Gaps = 76/269 (28%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQL----QQLVR----LYEENQQDLANALAADLRKHKQ 57
+L + A+ + E + R L L + N +DLA A R++
Sbjct: 7 ELGKRAKAASRKLATLSTEEKNRALLAMADALEAARAEILAANAKDLAAA-----RENGL 61
Query: 58 EAVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGV----YIYPDPYGVCLIIGA 113
+ L+ L +TP + I M DG+ + PDP G +I
Sbjct: 62 SEAM-------------LDRLA--LTPSR----IEAMADGLRQVAAL-PDPVGE--VIDG 99
Query: 114 WNYPLQLSLL----------------PAAGAIAA------GNVVILKPSEVAPASAKIMA 151
W P L + P AA GN VIL+ A S +
Sbjct: 100 WTLPNGLQIYRVRVPLGVIGVIYESRPNVTVDAAALCLKSGNAVILRGGSEAIHSNAAIV 159
Query: 152 ELLPKYL-----DNDTFQVVL-GGVEETTELLKHR--FDYIFYTGSTS-VGKIVRQAANE 202
E++ + L D Q++ EE ELL+ D + G + ++V A
Sbjct: 160 EVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDLVIPRGGAGLIRRVVENA--- 216
Query: 203 HLTPVTLELG-GKSPLYIDSSVNIELAVR 230
T +E G G +Y+D S +++ A++
Sbjct: 217 --TVPVIEHGVGNCHIYVDESADLDKALK 243
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 35.9 bits (83), Expect = 0.040
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILK 138
PYG II +N+PL++ L GA+ GN +LK
Sbjct: 142 PYGPVAIITPFNFPLEIPALQLMGALFMGNKPLLK 176
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 33.9 bits (79), Expect = 0.18
Identities = 61/228 (26%), Positives = 85/228 (37%), Gaps = 66/228 (28%)
Query: 38 EENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDG 97
E N +DLA A A L + + R L TPE+ I M +G
Sbjct: 42 EANAKDLAAAREAGLSEALLD-------------RLLL-------TPER----IEAMAEG 77
Query: 98 ---VYIYPDPYGVCLIIGAWNYPLQLSL----------------LP-----AAG-AIAAG 132
V PDP G ++ W P L + P AA + +G
Sbjct: 78 LRQVAALPDPVGE--VLRGWTLPNGLQIEKVRVPLGVIGIIYESRPNVTVDAAALCLKSG 135
Query: 133 NVVILKPSEVAPAS----AKIMAELLPKY-LDNDTFQVVLG-GVEETTELLKHRFDY--- 183
N VIL+ A S +I+ E L + L D Q++ E ELLK DY
Sbjct: 136 NAVILRGGSEALHSNRALVEIIQEALEEAGLPEDAVQLIPDTDREAVQELLKLD-DYIDL 194
Query: 184 -IFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVR 230
I G+ + +V A PV G +Y+D S ++E+AVR
Sbjct: 195 IIPRGGAGLIRFVVENA----TIPVIKHGDGNCHVYVDESADLEMAVR 238
>gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase. The related
model TIGR01092 describes a full-length fusion protein
delta l-pyrroline-5-carboxylate synthetase that includes
a gamma-glutamyl phosphate reductase region as described
by this model. Alternate name: glutamate-5-semialdehyde
dehydrogenase. The prosite motif begins at residue 332
of the seed alignment although not all of the members of
the family exactly obey the motif [Amino acid
biosynthesis, Glutamate family].
Length = 398
Score = 33.6 bits (77), Expect = 0.23
Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 40/222 (18%)
Query: 31 QQLVRLYEENQQDLANA----LAADLRKHKQEAVLFE--IEFLANDVRNTLNHLKQWMTP 84
Q + N +D+A A LA L +L E ++ +A+ V+ + + P
Sbjct: 29 AQAPAILAANAKDIAVAKENGLADALLD---RLLLTEGRLKGIADGVK----DVIELADP 81
Query: 85 EKPGKDIANMLDGVYIYP--DPYGVCLII--GAWNYPLQLSLLPAAGAIAAGNVVILKPS 140
D + G+ + P GV +I N + ++ L + GN VIL+
Sbjct: 82 VGKVIDGRELDSGLTLERVRVPLGVLGVIYEARPNVTVDIASL----CLKTGNAVILRGG 137
Query: 141 EVAPASAKIMAELLPKYLDNDTFQVVL--GGV--------EETTELLK--HRFDYIFYTG 188
+ A S K + E++ L Q L G V E +ELL D + G
Sbjct: 138 KEAVRSNKALVEVIQDALA----QTGLPVGAVQLIETPSRELVSELLDLDEYIDLLIPRG 193
Query: 189 STSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVR 230
+ ++++Q PV G +Y+D S ++ A++
Sbjct: 194 GNGLVRLIKQ---TSTIPVLGHGDGICHIYLDESADLIKAIK 232
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 33.5 bits (76), Expect = 0.30
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 3 NFGDLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLF 62
F D R+ P EF + + ++ L EE + DL + + +
Sbjct: 354 TFDDHAYRIREEVTIADEIP-EFELLESKSILSLAEEYEGDLMQIVDESALSEELDKGHN 412
Query: 63 EIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGV 98
EI L +++R L+ LK + KPG A L+ +
Sbjct: 413 EIFVLDSEIRMVLDTLKSLHSVPKPG---AKSLEII 445
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional.
Length = 110
Score = 30.6 bits (70), Expect = 0.50
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 24 EFRRRQLQQLVRLYEENQQDLANALAADLRKHKQ-EAVLFEIEFLANDVRNTLNHLK 79
E RRR+L++L + +E QQ A + Q +A+L +I L + R LN +K
Sbjct: 5 EIRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQAILRQI--LTPEARERLNRIK 59
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 31.5 bits (72), Expect = 0.67
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
L + ++ + K E R Q+++L E +++ N + A+ QE +E
Sbjct: 108 KLKKKLQELWAKLAKKADEEYREQVEKLNPAQSEYEEEKLNKIQAE-----QEREEERLE 162
Query: 66 FLANDVRNTLNHLKQ 80
L ++++N +N +K+
Sbjct: 163 ILKDNLKNYINAIKE 177
>gnl|CDD|214856 smart00852, MoCF_biosynth, Probable molybdopterin binding domain.
This domain is found a variety of proteins involved in
biosynthesis of molybdopterin cofactor. The domain is
presumed to bind molybdopterin. The structure of this
domain is known, and it forms an alpha/beta structure.
In the known structure of Gephyrin this domain mediates
trimerisation.
Length = 138
Score = 30.2 bits (69), Expect = 1.1
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 136 ILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGG---VEETTELLKH---RFDYIFYTGS 189
+L ++ ++ ++A LL + VV+GG E E L+ D + TG
Sbjct: 9 LLSGGQIRDSNGPMLAALLRELGIEVVRVVVVGGPDDPEAIREALREALAEADVVITTGG 68
Query: 190 TSVGK--IVRQAANEHL 204
T G + +A E
Sbjct: 69 TGPGPDDLTPEALAELG 85
>gnl|CDD|143399 cd07080, ALDH_Acyl-CoA-Red_LuxC, Acyl-CoA reductase LuxC. Acyl-CoA
reductase, LuxC, (EC=1.2.1.50) is the fatty acid
reductase enzyme responsible for synthesis of the
aldehyde substrate for the luminescent reaction
catalyzed by luciferase. The fatty acid reductase, a
luminescence-specific, multienzyme complex (LuxCDE),
reduces myristic acid to generate the long chain fatty
aldehyde required for the luciferase-catalyzed reaction
resulting in the emission of blue-green light.
Mutational studies of conserved cysteines of LuxC
revealed that the cysteine which aligns with the
catalytic cysteine conserved throughout the ALDH
superfamily is the LuxC acylation site. This CD is
composed of mainly bacterial sequences but also includes
a few archaeal sequences similar to the Methanospirillum
hungateiacyl acyl-CoA reductase RfbN.
Length = 422
Score = 31.1 bits (71), Expect = 1.2
Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 94 MLDG-VYIYPDPY------GVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAP-- 144
+LD V Y G+ + I A N PL L + + NV +LK S P
Sbjct: 95 ILDEWVPPGRGGYIRAQPRGLVVHIIAGNVPL-LPVWSIVRGLLVKNVNLLKMSSSDPLT 153
Query: 145 --ASAKIMAELLPKYLDNDTFQVV---LGGVEETTELLKHRFDYIFYTGSTSVGKIVRQA 199
A + +A++ P + D+ VV G E +L + + G +V I
Sbjct: 154 ATALLRSLADVDPNHPLTDSISVVYWPGGDAELEERILASADAVVAWGGEEAVKAIRSLL 213
Query: 200 A 200
Sbjct: 214 P 214
>gnl|CDD|235928 PRK07079, PRK07079, hypothetical protein; Provisional.
Length = 469
Score = 30.7 bits (70), Expect = 1.9
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQ-QDLANALAADLRKHKQEAVL--- 61
+ A FDSG F L + V E+Q D A AL A L A+
Sbjct: 5 AAIARAAAYFDSG-----AFFAD-LARRVAYRTESQNPDRAPALRAYLTDEIAPALAALG 58
Query: 62 FEIEFLANDV 71
F + N V
Sbjct: 59 FTCRIVDNPV 68
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 30.4 bits (69), Expect = 2.4
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 106 GVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTF-- 163
GV L I A+N+P AA A+ AG VI+KP A A+A + ++ +
Sbjct: 150 GVALFINAFNFPAWGLWEKAAPALLAGVPVIVKP---ATATAWLTQRMVKDVVAAGILPA 206
Query: 164 ---QVVLGGVEETTELLKH--RFDYIFYTGSTSVGKIVR 197
VV G + LL H FD + +TGS ++R
Sbjct: 207 GALSVVCGS---SAGLLDHLQPFDVVSFTGSAETAAVLR 242
>gnl|CDD|219178 pfam06792, UPF0261, Uncharacterized protein family (UPF0261).
Length = 403
Score = 29.8 bits (68), Expect = 3.8
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 1 MVNFGDLVQNARDTFDSGKSKPYEFRRRQLQQ------LVRLYEENQQDLANALAADLRK 54
MVNFG A DT P FR R+L + L+R E + + +A L +
Sbjct: 282 MVNFG-----AWDTV------PERFRGRKLHEHNPQVTLMRTTPEENRAIGRWIAEKLNR 330
Query: 55 HKQEAVLF 62
K +
Sbjct: 331 AKGPVRVL 338
>gnl|CDD|131168 TIGR02113, coaC_strep, phosphopantothenoylcysteine decarboxylase,
streptococcal. In most bacteria, a single bifunctional
protein catalyses phosphopantothenoylcysteine
decarboxylase and phosphopantothenate--cysteine ligase
activities, sequential steps in coenzyme A biosynthesis
(see TIGR00521). These activities reside in separate
proteins encoded by tandem genes in some bacterial
lineages. This model describes proteins from the genera
Streptococcus and Enterococcus homologous to the
N-terminal region of TIGR00521, corresponding to
phosphopantothenoylcysteine decarboxylase activity
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 177
Score = 29.0 bits (65), Expect = 4.0
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 8/44 (18%)
Query: 195 IVRQAANEHLTPVTLELGGKSPLYID-------SSVN-IELAVR 230
++ QAA + +TP+TL++ K+P+++D +N IELA +
Sbjct: 33 LMTQAATQFITPLTLQVLSKNPVHLDVMDEHDPKVINHIELAKK 76
>gnl|CDD|191268 pfam05405, Mt_ATP-synt_B, Mitochondrial ATP synthase B chain
precursor (ATP-synt_B). The Fo sector of the ATP
synthase is a membrane bound complex which mediates
proton transport. It is composed of nine different
polypeptide subunits (a, b, c, d, e, f, g F6, A6L).
Length = 163
Score = 28.4 bits (64), Expect = 5.5
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 351 CSRQVQAQILNQAKAVLDSWY-TEQVQGSKHYCRIVSDKHFQRLKSLV 397
R++QA + + K+ LD+ E + +V+ LK L
Sbjct: 99 FERELQAALYREIKSKLDTLVRKESSVRQREQDHLVNWVISSVLKELS 146
>gnl|CDD|132132 TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH1 system
associated. Members of this family include a match to
the pfam00534 Glycosyl transferases group 1 domain.
Nearly all are found in species that encode the
PEP-CTERM/exosortase system predicted to act in protein
sorting in a number of Gram-negative bacteria. In
particular, these transferases are found proximal to a
particular variant of exosortase, EpsH1, which appears
to travel with a conserved group of genes summarized by
Genome Property GenProp0652. The nature of the sugar
transferase reaction catalyzed by members of this clade
is unknown and may conceivably be variable with respect
to substrate by species, but we hypothesize a conserved
substrate.
Length = 374
Score = 28.9 bits (65), Expect = 5.7
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 9 QNARDTFD-SGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLR 53
++ RD FD G + Y + RR + L+ Y +DL + L ++
Sbjct: 111 EHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVK 156
>gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis
thaliana SQD1 and related proteins), extended (e) SDRs.
Arabidopsis thaliana UDP-sulfoquinovose-synthase (
SQD1), an extended SDR, catalyzes the transfer of
SO(3)(-) to UDP-glucose in the biosynthesis of plant
sulfolipids. Members of this subgroup share the
conserved SDR catalytic residues, and a partial match to
the characteristic extended-SDR NAD-binding motif.
Extended SDRs are distinct from classical SDRs. In
addition to the Rossmann fold (alpha/beta folding
pattern with a central beta-sheet) core region typical
of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 382
Score = 28.9 bits (65), Expect = 6.7
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 165 VVLGGVEETT---ELLKHRFDYIFYTGSTSVGKIVRQAANEHLTPVTLE-LGGKSPLYI- 219
VV G E T E L +RFDY G T + + QAA H P+T+ GG++ +I
Sbjct: 210 VVYGTKTEETEADERLINRFDYDGVFG-TVLNRFCVQAAIGH--PLTVYGKGGQTRGFIS 266
Query: 220 --DSSVNIELAVR 230
D+ +ELA+
Sbjct: 267 IRDTVQCLELALE 279
>gnl|CDD|152165 pfam11729, Capsid-VNN, nodavirus capsid protein. The capsid or
coat protein of this family is expressed in Nodaviridae,
that are ssRNA positive-strand viruses, with no DNA
stage. These viruses are the causative agents of viral
nervous necrosis in marine fish.
Length = 340
Score = 28.8 bits (64), Expect = 6.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 413 DRPLYIDSSVNIELAVRRFLWGKCINAGQLTRGPGWDR 450
DRPL ID S+ R W + G LTR G+
Sbjct: 262 DRPLRIDYSLGTGDVDRAQYWHFSKSGGNLTRPAGYQL 299
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.0 bits (65), Expect = 7.0
Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 18 GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNH 77
K + + +L+ + E+ +DL AL +L++ K+ + E + + +
Sbjct: 178 EVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEE-LEQEIEA 236
Query: 78 LKQ 80
L++
Sbjct: 237 LEE 239
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 28.4 bits (63), Expect = 7.7
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 139 PSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRF 181
P ++P + +++ LL K D Q + GG ++ E+++H+F
Sbjct: 216 PRTLSPEAKSLLSGLLKK----DPKQRLGGGPDDAKEIMQHKF 254
>gnl|CDD|218242 pfam04751, DUF615, Protein of unknown function (DUF615). This
family of bacterial proteins has no known function.
Length = 153
Score = 27.9 bits (63), Expect = 7.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 26 RRRQLQQLVRLY-EENQQDLANALAADLRKHKQEAVLF-EIE 65
RRRQLQ + +L EE+ + + AL K +QE ++E
Sbjct: 54 RRRQLQYIGKLMREEDIEAIRAALDKLKNKSEQETARLHKLE 95
>gnl|CDD|237515 PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol
dehydrogenase; Provisional.
Length = 862
Score = 29.0 bits (66), Expect = 7.9
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 399 SSGTIALG-GDMDASDRPLYIDSSVNIELAV 428
SSG ALG G A + P YID + +I+ AV
Sbjct: 209 SSGKPALGVG---AGNVPAYIDKTADIKRAV 236
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 28.9 bits (65), Expect = 7.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 245 IAPDYILCSR---QVQAQILNQAKAVLDSWYTEQEILPRQ 281
I P Y +C+ Q++ IL +A L+ Y EIL RQ
Sbjct: 424 IDPKYKMCNAFEGQMEKYILRKAFEGLEKPYLPDEILWRQ 463
>gnl|CDD|131094 TIGR02039, CysD, sulfate adenylyltransferase, small subunit.
Metabolic assimilation of sulfur from inorganic sulfate,
requires sulfate activation by coupling to a nucleoside,
for the production of high-energy nucleoside
phosphosulfates. This pathway appears to be similar in
all prokaryotic organisms. Activation is first achieved
through sulfation of sulfate with ATP by sulfate
adenylyltransferase (ATP sulfurylase) to produce
5'-phosphosulfate (APS), coupled by GTP hydrolysis.
Subsequently, APS is phosphorylated by an APS kinase to
produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In
Escherichia coli, ATP sulfurylase is a heterodimer
composed of two subunits encoded by cysD and cysN, with
APS kinase encoded by cysC. These genes are located in a
unidirectionally transcribed gene cluster, and have been
shown to be required for the synthesis of
sulfur-containing amino acids. Homologous to this E.coli
activation pathway are nodPQH gene products found among
members of the Rhizobiaceae family. These gene products
have been shown to exhibit ATP sulfurase and APS kinase
activity, yet are involved in Nod factor sulfation, and
sulfation of other macromolecules [Central intermediary
metabolism, Sulfur metabolism].
Length = 294
Score = 28.5 bits (64), Expect = 8.0
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 195 IVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
I+R+ A E PV L GK DSSV + LA + F G
Sbjct: 11 IIREVAAEFERPVMLYSIGK-----DSSVLLHLARKAFYPGP 47
>gnl|CDD|232861 TIGR00181, pepF, oligoendopeptidase F. This family represents the
oligoendopeptidase F clade of the family of larger M3 or
thimet (for thiol-dependent metallopeptidase)
oligopeptidase family. Lactococcus lactis PepF
hydrolyzed peptides of 7 and 17 amino acids with fairly
broad specificity. The homolog of lactococcal PepF in
group B Streptococcus was named PepB (PMID:8757883),
with the name difference reflecting a difference in
species of origin rather activity; substrate profiles
were quite similar. Differences in substrate specificity
should be expected in other species. The gene is
duplicated in Lactococcus lactis on the plasmid that
bears it. A shortened second copy is found in Bacillus
subtilis [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 591
Score = 28.4 bits (64), Expect = 9.2
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA 59
+ N+ K+K E R++ + + Y +++ A +++K+ A
Sbjct: 190 ITNSTYENFLQKNKDREIRKKAYESFYKAYRKHKNTFAALYYGNVQKNVFLA 241
>gnl|CDD|149916 pfam09002, DUF1887, Domain of unknown function (DUF1887). This
domain is found in a set of hypothetical bacterial
proteins.
Length = 379
Score = 28.2 bits (63), Expect = 9.7
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 24 EFRRRQLQQLVRLYEENQQDLA------NALAADLRKHKQEAVLFEIEFLANDVRNTLNH 77
E R+L +L + +L N LA RK ++ V E+ N LN
Sbjct: 162 EELDRRLLELAERWASRALELGPGLATLNYLATTCRKEQRLDV--ELSEKQQGYLNELNL 219
Query: 78 LKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAW 114
L + + +A G+ + D + G W
Sbjct: 220 LLEDLAET----GLATYEGGILTFLDEEARRFLNGEW 252
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,807,643
Number of extensions: 2405335
Number of successful extensions: 2697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2507
Number of HSP's successfully gapped: 228
Length of query: 484
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 383
Effective length of database: 6,457,848
Effective search space: 2473355784
Effective search space used: 2473355784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)