RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15673
(484 letters)
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 444 bits (1145), Expect = e-153
Identities = 133/274 (48%), Positives = 185/274 (67%)
Query: 1 MVNFGDLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAV 60
M + V+ AR F SG+++P +FR +QL+ L RL +E +Q+L ALAADL K++ A
Sbjct: 17 MSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAY 76
Query: 61 LFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQL 120
E+ ++ ++ + L +W E K D +YI+ +P GV L+IG WNYP L
Sbjct: 77 YEEVVYVLEEIEYMIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIGTWNYPFNL 136
Query: 121 SLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHR 180
++ P GAIAAGN V+LKPSE++ A ++A ++P+YLD D + V+ GGV ETTELLK R
Sbjct: 137 TIQPMVGAIAAGNAVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKER 196
Query: 181 FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINA 240
FD+I YTGST VGKI+ AA +HLTPVTLELGGKSP Y+D + ++++A RR WGK +N+
Sbjct: 197 FDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMNS 256
Query: 241 GQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTE 274
GQTC+APDYILC +Q QI+ + K L +Y E
Sbjct: 257 GQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGE 290
Score = 144 bits (366), Expect = 2e-38
Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 374
P Y+D + ++++A RR WGK +N+GQTC+APDYILC +Q QI+ + K L +Y E
Sbjct: 232 PCYVDKNCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGED 291
Query: 375 VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRPLYI 418
+ S+ Y RI+S +HFQR+ L+ +A GG DA+ R YI
Sbjct: 292 AKKSRDYGRIISARHFQRVMGLI-EGQKVAYGGTGDAATR--YI 332
Score = 51.4 bits (124), Expect = 4e-07
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
P Y+D + ++++A RR WGK +N+GQ
Sbjct: 232 PCYVDKNCDLDVACRRIAWGKFMNSGQ 258
Score = 47.2 bits (113), Expect = 8e-06
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 284 AYHGKYSFNTFTHRKSCLVK 303
+YHGK SF TF+HR+SCLV+
Sbjct: 428 SYHGKKSFETFSHRRSCLVR 447
Score = 44.9 bits (107), Expect = 4e-05
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 453 YHGKYSFVTFTHRKSCLVK 471
YHGK SF TF+HR+SCLV+
Sbjct: 429 YHGKKSFETFSHRRSCLVR 447
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 430 bits (1107), Expect = e-148
Identities = 97/275 (35%), Positives = 151/275 (54%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
L + F + + FR++ L++L N++ L +ALA DL K K L EI
Sbjct: 32 SLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIG 91
Query: 66 FLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPA 125
+ +++ L HL +W+ P Y+ +PYGV IIG +NYP+ L+L P
Sbjct: 92 AVLHEIDFALAHLDEWVAPVSVPSPDIIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPL 151
Query: 126 AGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGGVEETTELLKHRFDYIF 185
GAI GN I+KPSE P ++ ++ +++ + + V+ GG +E + LL FD+IF
Sbjct: 152 IGAIIGGNTCIIKPSETTPETSAVIEKIIAEAFAPEYVAVIQGGRDENSHLLSLPFDFIF 211
Query: 186 YTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCI 245
+TGS +VGK+V QAA +HLTPV LELGGK PL + +++ V + ++GK IN+GQT I
Sbjct: 212 FTGSPNVGKVVMQAAAKHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXI 271
Query: 246 APDYILCSRQVQAQILNQAKAVLDSWYTEQEILPR 280
APDY+ V+ +L + + + E +
Sbjct: 272 APDYLYVHYSVKDALLERLVERVKTELPEINSTGK 306
Score = 105 bits (264), Expect = 1e-24
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 374
PL + +++ V + ++GK IN+GQT IAPDY+ V+ +L + + + E
Sbjct: 242 PLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTELPE- 300
Query: 375 VQGSKHYCRIVSDKHFQRLKSLVHSS-GTIALGGDMDASDRPL 416
++V+++ QRL SL+ ++ G + +G D S R L
Sbjct: 301 ---INSTGKLVTERQVQRLVSLLEATQGQVLVGSQADVSKRAL 340
Score = 52.4 bits (126), Expect = 2e-07
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQLTRGPGW 448
PL + +++ V + ++GK IN+GQ P +
Sbjct: 242 PLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDY 275
Score = 47.4 bits (113), Expect = 7e-06
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 284 AYHGKYSFNTFTHRKSCLVK 303
YHG +S+ TFTH+KS +
Sbjct: 437 EYHGHFSYLTFTHKKSVRIV 456
Score = 45.0 bits (107), Expect = 3e-05
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 453 YHGKYSFVTFTHRKSCLVK 471
YHG +S++TFTH+KS +
Sbjct: 438 YHGHFSYLTFTHKKSVRIV 456
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 168 bits (428), Expect = 7e-47
Identities = 75/274 (27%), Positives = 117/274 (42%), Gaps = 20/274 (7%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V AR FD+G + P+E R + V++ E + LAA+ +
Sbjct: 52 VAAARAAFDNGPWPSTPPHE-RAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETMHW 110
Query: 65 EFLANDVRNTLNHLKQWMTPEKPGKDIANMLDG-VYIYPDPYGVCLIIGAWNYPLQLSLL 123
+ + + G + +P GV I AWN PL L++
Sbjct: 111 MGSMGAMNYFAGAADKV-----TWTETRTGSYGQSIVSREPVGVVGAIVAWNVPLFLAVN 165
Query: 124 PAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTELLK 178
A A+ AG ++LKP+ P +A +AE+ LP+ VV GG+E L
Sbjct: 166 KIAPALLAGCTIVLKPAAETPLTANALAEVFAEVGLPE----GVLSVVPGGIETGQALTS 221
Query: 179 H-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
+ D +TGS++VG+ V + A E L P TLELGGKS I V++ A+ ++
Sbjct: 222 NPDIDMFTFTGSSAVGREVGRRAAEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGV 281
Query: 238 INAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
+NAGQ C+ IL R +I+ + +
Sbjct: 282 MNAGQGCVNQTRILAPRSRYDEIVAAVTNFVTAL 315
Score = 35.2 bits (82), Expect = 0.044
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 323 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 370
++ A+ ++ +NAGQ C+ IL R +I+ + +
Sbjct: 268 DLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRYDEIVAAVTNFVTAL 315
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 167 bits (425), Expect = 1e-46
Identities = 73/272 (26%), Positives = 117/272 (43%), Gaps = 21/272 (7%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
V+ A D + + E R+ L ++V+ YE + D+ A+ +L + +
Sbjct: 51 VEAADDVYLEFRHTSVKE-RQALLDKIVKEYENRKDDIVQAITDELGAPLSLSERVHYQM 109
Query: 67 LANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAA 126
N + L + E+ G D + + GV +I WN+P + L A
Sbjct: 110 GLNHFVAARDALDNYEFEERRGDD--------LVVKEAIGVSGLITPWNFPTNQTSLKLA 161
Query: 127 GAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVEETTELLKHR 180
A AAG+ V+LKPSE P +A I+AE+ +PK F +V G G L +H
Sbjct: 162 AAFAAGSPVVLKPSEETPFAAVILAEIFDKVGVPK----GVFNLVNGDGAGVGNPLSEHP 217
Query: 181 -FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCIN 239
+ +TGS G + + A + V+LELGGKSP + V+I+ A + N
Sbjct: 218 KVRMMSFTGSGPTGSKIMEKAAKDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNN 277
Query: 240 AGQTCIAPDYILCSRQVQAQILNQAKAVLDSW 271
GQ C A +L +++ L + K
Sbjct: 278 TGQVCTAGTRVLVPNKIKDAFLAELKEQFSQV 309
Score = 35.2 bits (82), Expect = 0.051
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 322 VNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVL------DSWYTEQV 375
V+I+ A + N GQ C A +L +++ L + K +
Sbjct: 261 VDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDAFLAELKEQFSQVRVGNPREDGTQ 320
Query: 376 QGSKHYCRIVSDKHFQRLKSLVHSSG-----TIALGG 407
G I+S K F ++++ ++ G + GG
Sbjct: 321 VGP-----IISKKQFDQVQNYIN-KGIEEGAELFYGG 351
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 159 bits (404), Expect = 2e-43
Identities = 73/270 (27%), Positives = 131/270 (48%), Gaps = 22/270 (8%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
+ A+ F + + P+E R +++++ +YE+ D+A ++ ++ A+ +
Sbjct: 69 INAAKKAFQTWKTTSPHE-RLGFVEKILEIYEKRSSDMAKTISMEMGAPIDMALNAQTAT 127
Query: 67 LANDVRNTLNHLK--QWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLP 124
++ +RN + K + G + A ++ D GV +I WN+P+ L
Sbjct: 128 GSSHIRNFIKAYKEFSFQEALIEGNEQA------ILHYDAIGVVGLITPWNWPMNQVTLK 181
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVEETTELLK 178
A+ AG ++LKPSE+AP SA + AE+ LP F ++ G G + L
Sbjct: 182 VIPALLAGCTMVLKPSEIAPLSAMLFAEILDEAALPS----GVFNLINGDGANVGSYLSA 237
Query: 179 HR-FDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
H + I +TGST GK + + A+ L V LELGGK I + +I+ A++R +
Sbjct: 238 HPDLEMISFTGSTRAGKDISKNASNTLKRVCLELGGKGANIIFADADID-ALQRGVRHCF 296
Query: 238 INAGQTCIAPDYILCSRQVQAQILNQAKAV 267
N+GQ+C AP +L + + + + AK +
Sbjct: 297 YNSGQSCNAPTRMLVEQAIYDKAIKTAKDI 326
Score = 31.4 bits (72), Expect = 0.64
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 327 AVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA------VLDSWYTEQVQGSKH 380
A++R + N+GQ+C AP +L + + + + AK V T G
Sbjct: 287 ALQRGVRHCFYNSGQSCNAPTRMLVEQAIYDKAIKTAKDIAEKTQVGPGHQTGNHIGP-- 344
Query: 381 YCRIVSDKHFQRLKSLVHSSG-----TIALGG 407
+VS + + +++ L+ SG T+ GG
Sbjct: 345 ---VVSKEQYDKIQDLI-QSGIDEGATLVTGG 372
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 155 bits (393), Expect = 5e-42
Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 28/268 (10%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V AR+ F + +P E R L++ + +LA + + K E+ E+ +
Sbjct: 48 VCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPLWES-ATEVTSM 106
Query: 68 ANDVRNTLNHLKQWM---TPEKPGKDIANMLDG-VYIYPDPYGVCLIIGAWNYPLQLSLL 123
N V E+ G+ + D + P+GV + G +N+P L
Sbjct: 107 VNKVA--------ISVQAFRERTGEKSGPLADATAVLRHKPHGVVAVFGPYNFPGHLPNG 158
Query: 124 PAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTELLK 178
A+ AGN V+ KPSE+ P A++ + LP +V GG E L
Sbjct: 159 HIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPA----GVLNLVQGGRETGVALAA 214
Query: 179 H-RFDYIFYTGSTSVGKIV-RQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
H D +F+TGS+ G ++ Q + + LE+GG +PL ++ +++ AV +
Sbjct: 215 HRGLDGLFFTGSSRTGNLLHSQFGGQPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSA 274
Query: 237 CINAGQTCIAPDYILCSRQVQAQILNQA 264
I+AGQ C +L V A
Sbjct: 275 FISAGQRCTCARRLL----VPQGAWGDA 298
Score = 35.6 bits (83), Expect = 0.030
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQA 363
PL ++ +++ AV + I+AGQ C +L V A
Sbjct: 253 NPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLL----VPQGAWGDA 298
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 155 bits (393), Expect = 7e-42
Identities = 79/251 (31%), Positives = 114/251 (45%), Gaps = 27/251 (10%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
VQ+A+ + K E R R + + R+ E + ++A + K EA
Sbjct: 64 VQSAQAAYLKWSKMAGIE-RSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEY----- 117
Query: 67 LANDVRNTLNHLKQW--MTPEKPGKDIANMLDG---VYIYPDPYGVCLIIGAWNYPLQLS 121
D+ ++ + + P G+ I L G Y +P GVC I AWNYP ++
Sbjct: 118 ---DIDAAWQCIEYYAGLAPTLSGQHI--QLPGGAFAYTRREPLGVCAGILAWNYPFMIA 172
Query: 122 LLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTEL 176
A A+A GN V+ KPS + P + I+AE+ +P L N VV GG E + L
Sbjct: 173 AWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVN----VVQGGAETGSLL 228
Query: 177 LKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWG 235
H + +TGS GK V + + + + VTLELGGKSPL I +E AVR L
Sbjct: 229 CHHPNVAKVSFTGSVPTGKKVMEMSAKTVKHVTLELGGKSPLLIFKDCELENAVRGALMA 288
Query: 236 KCINAGQTCIA 246
+ GQ C
Sbjct: 289 NFLTQGQVCTN 299
Score = 29.4 bits (67), Expect = 3.3
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 25/109 (22%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 365
PL I +E AVR L + GQ C +R Q +++ + KA
Sbjct: 269 PLLIFKDCELENAVRGALMANFLTQGQVCTN-----GTRVFVQREIMPQFLEEVVKRTKA 323
Query: 366 VL--DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD 408
++ D TE G ++S ++ V + + GG+
Sbjct: 324 IVVGDPLLTETRMGG-----LISKPQLDKVLGFVAQAKKEGARVLCGGE 367
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 153 bits (389), Expect = 3e-41
Identities = 80/264 (30%), Positives = 113/264 (42%), Gaps = 28/264 (10%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
+ +A+ P R R L++ + E L+ D K QE
Sbjct: 58 IASAKRAQKEWAAMSPMA-RGRILKRAADIMRERNDALSTLETLDTGKPIQET------- 109
Query: 67 LANDVRNTLNHLKQ---WMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLL 123
+ D + + + G I D Y P GVC+ IGAWNYP Q++
Sbjct: 110 IVADPTSGADAFEFFGGIAPSALNGDYIPLGGDFAYTKRVPLGVCVGIGAWNYPQQIACW 169
Query: 124 PAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTELLK 178
AA A+ AGN ++ KPSE P A +AE+ LPK L N V+ G + L+
Sbjct: 170 KAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFN----VIQGDRDTGPLLVN 225
Query: 179 H-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
H + TGS G+ V AA HL VT+ELGGKSP+ + +IE AV + G
Sbjct: 226 HPDVAKVSLTGSVPTGRKVAAAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNF 285
Query: 238 INAGQTCIAPDYILCSRQ-VQAQI 260
++GQ C +R VQ +
Sbjct: 286 YSSGQVCSN-----GTRVFVQKKA 304
Score = 29.1 bits (66), Expect = 3.7
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 25/108 (23%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 365
P+ + +IE AV + G ++GQ C +R + + + +A
Sbjct: 264 PMIVFDDADIESAVGGAMLGNFYSSGQVCSN-----GTRVFVQKKAKARFLENLKRRTEA 318
Query: 366 VL--DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGG 407
++ D G +VS +++ S + T+ GG
Sbjct: 319 MILGDPLDYATHLGP-----LVSKAQQEKVLSYIEKGKAEGATLITGG 361
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 152 bits (387), Expect = 9e-41
Identities = 66/272 (24%), Positives = 106/272 (38%), Gaps = 37/272 (13%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+Q+A + F + ++ E R L + + + + + L + K +EA
Sbjct: 80 IQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKEAD------- 132
Query: 68 ANDVRNTLNHLK---QWMTPEKPGKDIANMLDGV--YIYPDPYGVCLIIGAWNYPLQLSL 122
D ++ L+ + M E G + P GV + I WN+ L + +
Sbjct: 133 -ADTAEAIDFLEYYARQMI-ELNRGKEILSRPGEQNRYFYTPMGVTVTISPWNFALAIMV 190
Query: 123 LPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVEETTEL 176
A I GN V+LKP+ P A E+ LPK V G G E L
Sbjct: 191 GTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPK----GVINYVPGSGAEVGDYL 246
Query: 177 LKH-RFDYIFYTGSTSVGKIVRQAA------NEHLTPVTLELGGKSPLYIDSSVNIELAV 229
+ H + I +TGS VG + + A HL V +E+GGK + +D +++LA
Sbjct: 247 VDHPKTSLITFTGSKDVGVRLYERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAA 306
Query: 230 RRFLWGKCINAGQTCIAPDYILCSRQ-VQAQI 260
L +GQ C A SR + +
Sbjct: 307 ESILVSAFGFSGQKCSA-----GSRAVIHKDV 333
Score = 37.6 bits (88), Expect = 0.009
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 24/112 (21%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 365
+ +D +++LA L +GQ C A SR +V + + AK
Sbjct: 293 TVVVDRDADLDLAAESILVSAFGFSGQKCSA-----GSRAVIHKDVYDEVLEKTVALAKN 347
Query: 366 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLV---HSSGTIALGGDMDAS 412
V D + G ++ +K F+++ S + G + GG+ D+S
Sbjct: 348 LTVGDPTNRDNYMGP-----VIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSS 394
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 150 bits (382), Expect = 2e-40
Identities = 72/249 (28%), Positives = 103/249 (41%), Gaps = 21/249 (8%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
V+ A F G++ P R L +L + EEN Q A + + K A EI
Sbjct: 66 VRAADAAFAEWGQTTPKV-RAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPA 124
Query: 67 LANDVR-----NTLNHLKQWMTPEKPGKDIANMLDG--VYIYPDPYGVCLIIGAWNYPLQ 119
+ + R + G L+G I DP GV I WNYPL
Sbjct: 125 IVDVFRFFAGAARCLN----------GLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLM 174
Query: 120 LSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLG-GVEETTELLK 178
++ A A+AAGN V+LKPSE+ P +A +AEL ++ G G L
Sbjct: 175 MAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVVNILFGRGKTVGDPLTG 234
Query: 179 H-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
H + + TGS + G+ + + +ELGGK+P+ + +IE V
Sbjct: 235 HPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGY 294
Query: 238 INAGQTCIA 246
NAGQ C A
Sbjct: 295 YNAGQDCTA 303
Score = 28.7 bits (65), Expect = 4.6
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 16/106 (15%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA------VL 367
AP+ + +IE V NAGQ C A I + + ++ + A
Sbjct: 272 APVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSG 331
Query: 368 DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHS-----SGTIALGGD 408
G + S H +R+ V + GG+
Sbjct: 332 APDDESTELGP-----LSSLAHLERVGKAVEEAKATGHIKVITGGE 372
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 148 bits (377), Expect = 1e-39
Identities = 81/269 (30%), Positives = 124/269 (46%), Gaps = 36/269 (13%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
VQ+A + + R R L++ V + E +LA D K E
Sbjct: 50 VQSAVEGQKVWAAMTAMQ-RSRILRRAVDILRERNDELAALETLDTGKPLAET------- 101
Query: 67 LANDVRNTLNHLK---QWMTPEKPGKDIANMLDG---VYIYPDPYGVCLIIGAWNYPLQL 120
+ D+ + L+ + + G+ I L VY +P GV IGAWNYP+Q+
Sbjct: 102 RSVDIVTGADVLEYYAGLVPAIE-GEQI--PLRETSFVYTRREPLGVVAGIGAWNYPVQI 158
Query: 121 SLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVEETT 174
+L +A A+AAGN +I KPSEV P +A +AE+ +P + N V+ G G E
Sbjct: 159 ALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFN----VLTGSGREVGQ 214
Query: 175 ELLKH-RFDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRF 232
L +H + I +TG TS GK ++ A++ L VT+ELGGKSPL I +++ A
Sbjct: 215 WLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIA 274
Query: 233 LWGKCINAGQTCIAPDYILCSRQ-VQAQI 260
+ ++GQ C +R +
Sbjct: 275 VMANFFSSGQVCTN-----GTRVFIHRSQ 298
Score = 29.0 bits (66), Expect = 3.5
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 25/109 (22%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 365
PL I +++ A + ++GQ C +R + +A++L + +
Sbjct: 258 PLIIFPDADLDRAADIAVMANFFSSGQVCTN-----GTRVFIHRSQQARFEAKVLERVQR 312
Query: 366 VL--DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD 408
+ D G +VS H + + + S + GG+
Sbjct: 313 IRLGDPQDENTNFGP-----LVSFPHMESVLGYIESGKAQKARLLCGGE 356
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 148 bits (376), Expect = 1e-39
Identities = 68/249 (27%), Positives = 96/249 (38%), Gaps = 21/249 (8%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
V A F ++ P E R L ++ E+ + A A + K E+
Sbjct: 68 VDAAERAFVGWSQTTPAE-RSNALLKIADAIEKEADEFAALEALNCGKPINAVKNDELPA 126
Query: 67 LANDVR-----NTLNHLKQWMTPEKPGKDIANMLDG--VYIYPDPYGVCLIIGAWNYPLQ 119
+ + R H L G I DP G+ I WNYPL
Sbjct: 127 IIDCWRFFAGAVRNLH----------APAAGEYLPGHTSMIRRDPIGIVGSIAPWNYPLM 176
Query: 120 LSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLG-GVEETTELLK 178
+ A AI GN V+ KPSE P +A +A L+ L V+ G G L+
Sbjct: 177 MMAWKLAPAIGGGNTVVFKPSEQTPLTALKLARLIADILPEGVVNVITGRGETVGNALIN 236
Query: 179 H-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
H + + TG + GK V AA + + LELGGK+P+ + ++E V
Sbjct: 237 HPKVGMVSITGDIATGKKVLAAAAKTVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGY 296
Query: 238 INAGQTCIA 246
NAGQ C A
Sbjct: 297 YNAGQDCTA 305
Score = 27.9 bits (63), Expect = 9.7
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 26/110 (23%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAK 364
AP+ + ++E V NAGQ C A R ++ A + +
Sbjct: 274 APVIVYGDADLEAVVNGIRTFGYYNAGQDCTAA-----CRIYAEAGIYEKLVADLTSAVS 328
Query: 365 AVL--DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSSG-----TIALGG 407
+ TE G ++S + R+ S V + I GG
Sbjct: 329 TIRYNLDDDTENEIGP-----LISRRQRDRVASFVERAADQKHIEITTGG 373
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 148 bits (375), Expect = 2e-39
Identities = 62/274 (22%), Positives = 103/274 (37%), Gaps = 40/274 (14%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
++ A F + K P E R R L + L +++L L ++ K+ EA
Sbjct: 80 LEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEAS------- 132
Query: 68 ANDVRNTLNHLK---QWMT----PEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQL 120
DV ++ ++ + P + P G ++I WN+P+ +
Sbjct: 133 -ADVAEAIDFIEYYARAALRYRYPAVEVVPYPGED--NESFYVPLGAGVVIAPWNFPVAI 189
Query: 121 SLLPAAGAIAAGNVVILKPSEVAPASAKIMAELL-----PKYLDNDTFQVVLG-GVEETT 174
G +A GN VI KP+E A + E+ P + G G E
Sbjct: 190 FTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPP----GVVNFLPGVGEEVGA 245
Query: 175 ELLKH-RFDYIFYTGSTSVGKIVRQAANE------HLTPVTLELGGKSPLYIDSSVNIEL 227
L++H R +I +TGS VG + +AA +E GGK+ + +D + + +L
Sbjct: 246 YLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDL 305
Query: 228 AVRRFLWGKCINAGQTCIAPDYILCSRQ-VQAQI 260
A + GQ C A SR +
Sbjct: 306 AAEGVVVSAYGFQGQKCSA-----ASRLILTQGA 334
Score = 33.3 bits (77), Expect = 0.20
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQ-VQAQI 359
+ +D + + +LA + GQ C A SR +
Sbjct: 294 AIIVDETADFDLAAEGVVVSAYGFQGQKCSA-----ASRLILTQGA 334
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 147 bits (373), Expect = 7e-39
Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 31/255 (12%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V AR FD+G + E R R + ++ L Q++LA + ++ K +A
Sbjct: 67 VAAARKAFDAGPWPRMSGAE-RSRLMFKVADLILARQEELALIESLEVGKPIAQA----- 120
Query: 65 EFLANDVRNTLNHLK---QWMTPEKPGKDIANMLDG---VYIYPDPYGVCLIIGAWNYPL 118
++ + N + + +P GV II WN+P
Sbjct: 121 ---RGEIGFCADLWSYAAGQAR--ALEGQTHNNIGDDRLGLVLREPVGVVGIITPWNFPF 175
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVEE 172
++ AI +G V+LKPSE ++ +AEL +P F VV G G
Sbjct: 176 IIASERVPWAIGSGCTVVLKPSEFTSGTSIRLAELAREAGIPD----GVFNVVTGYGDPA 231
Query: 173 TTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRR 231
L + D + +TGS VG + + A + V LELGGK P + + +++ A
Sbjct: 232 GQVLAEDPNVDMVAFTGSVRVGTKLGEIAARTVKRVGLELGGKGPQIVFADADLDAAADG 291
Query: 232 FLWGKCINAGQTCIA 246
+G NAGQ CI+
Sbjct: 292 IAYGVYHNAGQCCIS 306
Score = 31.0 bits (71), Expect = 0.83
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 323 NIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKAVL--DSWY 371
+++ A +G NAGQ CI+ SR + ++L+ ++ V D
Sbjct: 284 DLDAAADGIAYGVYHNAGQCCISG-----SRLLVQEGIRDALMERLLDISRKVAFGDPLN 338
Query: 372 TEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRPLYI 418
G+ ++S+ H +++ S V + + LGG+ + LY
Sbjct: 339 ERTKIGA-----MISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYY 384
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 146 bits (370), Expect = 1e-38
Identities = 56/271 (20%), Positives = 100/271 (36%), Gaps = 39/271 (14%)
Query: 8 VQNARDTFDSGKSK--PYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
+ E R L++ + E N A L + K K A + E++
Sbjct: 60 LDVLFKRGRWSARDMPGTE-RLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAA-VGEVK 117
Query: 66 FLANDVRNTLNHLKQWMTPEK--------PGKDIANMLDG-VYIYPDPYGVCLIIGAWNY 116
+ +R + PG + L+ + +P GV I +NY
Sbjct: 118 AAVDRLR--------LAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNY 169
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVE 171
PL ++ + GN V++KPS P A + + P D ++ +
Sbjct: 170 PLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPP----DAIALLNLPGK 225
Query: 172 ETTELLKH-RFDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAV 229
E +++ R + +TGST VG+ +V+ + +ELGG P + +++LA
Sbjct: 226 EAEKIVADDRVAAVSFTGSTEVGERVVKVGG---VKQYVMELGGGDPAIVLEDADLDLAA 282
Query: 230 RRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
+ G AGQ C A +L + +
Sbjct: 283 DKIARGIYSYAGQRCDAIKLVL----AERPV 309
Score = 42.2 bits (100), Expect = 3e-04
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
P + +++LA + G AGQ C A +L + +
Sbjct: 268 DPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVL----AERPV 309
Score = 27.9 bits (63), Expect = 7.6
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
P + +++LA + G AGQ
Sbjct: 269 PAIVLEDADLDLAADKIARGIYSYAGQ 295
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 146 bits (371), Expect = 1e-38
Identities = 77/261 (29%), Positives = 120/261 (45%), Gaps = 38/261 (14%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
V A++ F++G K + R R L +L + E++Q++LA A D A+ +
Sbjct: 80 VAAAKEAFENGLWGKINARD-RGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHV 138
Query: 65 EFLANDVR-----------NTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGA 113
R T+ + +P +++ +P GVC I+
Sbjct: 139 GMSIQTFRYFAGWCDKIQGATIP-----INQARPNRNLT------LTKKEPVGVCGIVIP 187
Query: 114 WNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG 168
WNYPL + A +AAGN V++KP++V P +A AEL +PK ++ G
Sbjct: 188 WNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPK----GVVNILPG 243
Query: 169 -GVEETTELLKH-RFDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLYIDSSVNI 225
G L H I +TGST VGK I++ A ++ V+LELGGKSPL I + ++
Sbjct: 244 SGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDL 303
Query: 226 ELAVRRFLWGKCINAGQTCIA 246
AV+ + N G+ CIA
Sbjct: 304 NKAVQMGMSSVFFNKGENCIA 324
Score = 29.1 bits (66), Expect = 4.1
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA------VLD 368
PL I + ++ AV+ + N G+ CIA + + Q + + + +
Sbjct: 294 PLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGN 353
Query: 369 SWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD 408
+ G + H ++L T+ GG+
Sbjct: 354 PLERDTNHGP-----QNHEAHLRKLVEYCQRGVKEGATLVCGGN 392
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 145 bits (369), Expect = 1e-38
Identities = 64/275 (23%), Positives = 110/275 (40%), Gaps = 46/275 (16%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A+ + P R + + L EE+++++ L + + +A EI
Sbjct: 56 YEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTRSKA-NLEITLA 114
Query: 68 ANDVRNTLNHLKQWMTPE------------KPGKDIANMLDGVYIYPDPYGVCLIIGAWN 115
N + PGK+ +Y GV +I WN
Sbjct: 115 GNITK--------ESASFPGRVHGRISPSNTPGKEN-------RVYRVAKGVVGVISPWN 159
Query: 116 YPLQLSLLPAAGAIAAGNVVILKPSEVAPASA-KIMAEL-----LPKYLDNDTFQVVLGG 169
+PL LS+ A A+A GN V++KP+ P + I A + +P + V G
Sbjct: 160 FPLNLSIRSVAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGV----ISTVAGA 215
Query: 170 VEET-TELLKH-RFDYIFYTGSTSVGKIVRQAAN--EHLTPVTLELGGKSPLYIDSSVNI 225
E + H I +TGST VG+ V + A + V LELGG +P + + +I
Sbjct: 216 GSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAINGGPMKTVALELGGNAPFVVLADADI 275
Query: 226 ELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
+ A + G ++ GQ C++ + ++ V A +
Sbjct: 276 DAAAQAAAVGAFLHQGQICMSINRVI----VDAAV 306
Score = 36.4 bits (85), Expect = 0.017
Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 23/102 (22%)
Query: 323 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ------AKA----VLDSWYT 372
+I+ A + G ++ GQ C++ + ++ V A + ++ D
Sbjct: 274 DIDAAAQAAAVGAFLHQGQICMSINRVI----VDAAVHDEFLEKFVEAVKNIPTGDPSAE 329
Query: 373 EQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMD 410
+ G +++D LK + + T+ + G ++
Sbjct: 330 GTLVGP-----VINDSQLSGLKEKIELAKKEGATVQVEGPIE 366
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 145 bits (369), Expect = 2e-38
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 29/254 (11%)
Query: 8 VQNARDTFDSG---KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
+ AR F+SG + R ++++ + +E+++ LA D K +E+
Sbjct: 76 ILAARRAFESGEWSQETAET-RGKKVRAIADKIKEHREALARLETLDTGKTLEES----- 129
Query: 65 EFLANDVRNTLNHLK---QWMTPEKPGKDIANMLDGV--YIYPDPYGVCLIIGAWNYPLQ 119
D+ + N + G+ I + + I +P GV I WNYPL
Sbjct: 130 ---YADMDDIHNVFMYFAGLAD-KDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLL 185
Query: 120 LSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVEET 173
+ A A+A G +++KPSE+ P + + EL PK N ++LG G E
Sbjct: 186 QASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTIN----LILGAGSEVG 241
Query: 174 TELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRF 232
+ H D + +TG GK + + A ++T + LELGGK+P I + ELAV +
Sbjct: 242 DVMSGHKEVDLVSFTGGIETGKHIMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQA 301
Query: 233 LWGKCINAGQTCIA 246
L G +AGQ C A
Sbjct: 302 LNGGYFHAGQVCSA 315
Score = 29.1 bits (66), Expect = 4.1
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 25/109 (22%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 365
P I + ELAV + L G +AGQ C A SR + + ++++ K
Sbjct: 285 PNIIFDDADFELAVDQALNGGYFHAGQVCSA-----GSRILVQNSIKDKFEQALIDRVKK 339
Query: 366 VL--DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD 408
+ + + + G ++S +H +++S + + TIA+GG
Sbjct: 340 IKLGNGFDADTEMGP-----VISTEHRNKIESYMDVAKAEGATIAVGGK 383
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 143 bits (362), Expect = 7e-38
Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 19/249 (7%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIE 65
++ + + + E + + + + LA + E + +
Sbjct: 11 AMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGIVEDKVIKNH 70
Query: 66 FLANDVRNTLNHLKQW-MTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLP 124
F + + N + + E G +P G+ I P ++
Sbjct: 71 FASEFIYNKYKDEQTCGILEEDDNL-------GTMTIAEPVGIICGIVPTTNPTSTAIFK 123
Query: 125 AAGAIAAGNVVILKPSEVAPAS----AKIMAELLPKY-LDNDTFQVVLG-GVEETTELLK 178
+ ++ N +I P A S AK++ + D + VE + L+K
Sbjct: 124 SLISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMK 183
Query: 179 H-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC 237
H I TG + K AA P G P+ ID + +I+ AV L K
Sbjct: 184 HDDIALILATGGPGMVK----AAYSSGKPAIGVGAGNVPVVIDETADIKRAVASVLMSKT 239
Query: 238 INAGQTCIA 246
+ G C +
Sbjct: 240 FDNGVVCAS 248
Score = 38.4 bits (90), Expect = 0.005
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTE 373
P+ ID + +I+ AV L K + G C + ++ V ++ ++ K
Sbjct: 217 VPVVIDETADIKRAVASVLMSKTFDNGVVCASEQAVI----VVDEVYDEVKERF------ 266
Query: 374 QVQGSKHYCRIVSDKHFQRLKSLVHSSGTI 403
+ H ++S +++ ++ G +
Sbjct: 267 ----ASHKAHVLSKTDADKVRKVLLIDGAL 292
Score = 31.1 bits (71), Expect = 0.83
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQL 442
P+ ID + +I+ AV L K + G +
Sbjct: 218 PVVIDETADIKRAVASVLMSKTFDNGVV 245
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 143 bits (363), Expect = 7e-38
Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 38/271 (14%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+A+ + ++ Y R L ++ + +++ + L+ ++ K + A + E+
Sbjct: 46 YASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSA-VSEVVRT 104
Query: 68 ANDVRNTLNHLKQWMTPE--------KPGKDIANMLDG--VYIYPDPYGVCLIIGAWNYP 117
A + + E G + +P G+ L I +NYP
Sbjct: 105 AEIIN--------YAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYP 156
Query: 118 LQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVE 171
+ L+ A A+ AGNV+ KP S ++AE LP F + G G E
Sbjct: 157 VNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPA----GVFNTITGRGSE 212
Query: 172 ETTELLKH-RFDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAV 229
+++H ++I +TGST +G+ I + A + P+ LELGGK + ++EL
Sbjct: 213 IGDYIVEHQAVNFINFTGSTGIGERIGKMAG---MRPIMLELGGKDSAIVLEDADLELTA 269
Query: 230 RRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
+ + G +GQ C A +L V +
Sbjct: 270 KNIIAGAFGYSGQRCTAVKRVL----VMESV 296
Score = 41.8 bits (99), Expect = 4e-04
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
+ ++EL + + G +GQ C A +L V +
Sbjct: 255 DSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVL----VMESV 296
Score = 27.9 bits (63), Expect = 9.3
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
+ ++EL + + G +GQ
Sbjct: 256 SAIVLEDADLELTAKNIIAGAFGYSGQ 282
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 143 bits (363), Expect = 1e-37
Identities = 71/256 (27%), Positives = 113/256 (44%), Gaps = 27/256 (10%)
Query: 8 VQNARDTFDSGKSKPY-----EFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLF 62
V A+ K + R R L+ + E + +LA + D K EA +
Sbjct: 51 VAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEA-AW 109
Query: 63 EIEFLANDVR-----NTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYP 117
+I+ +A +Q P + ++ +P GV +I WNYP
Sbjct: 110 DIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKS-----HVLREPIGVVGLITPWNYP 164
Query: 118 LQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVE 171
+ ++ A A+AAG ILKPSE+A + + E+ LP + N ++ G G E
Sbjct: 165 MLMATWKVAPALAAGCAAILKPSELASLTCLELGEICKEVGLPPGVLN----ILTGLGPE 220
Query: 172 ETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVR 230
L H D + +TGS++ G + AA + + PV+LELGGKSPL + V+++ A
Sbjct: 221 AGAPLATHPDVDKVAFTGSSATGSKIMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAE 280
Query: 231 RFLWGKCINAGQTCIA 246
++G GQ C A
Sbjct: 281 WAIFGCFWTNGQICSA 296
Score = 28.3 bits (64), Expect = 6.7
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 25/109 (22%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 365
PL + V+++ A ++G GQ C A SR + +I+ K
Sbjct: 266 PLVVFEDVDLDKAAEWAIFGCFWTNGQICSA-----TSRLILHESIATEFLNRIVKWIKN 320
Query: 366 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD 408
+ D G +VS+ ++++ V ++ TI GG
Sbjct: 321 IKISDPLEEGCRLGP-----VVSEGQYEKILKFVSNAKSEGATILTGGS 364
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 143 bits (362), Expect = 1e-37
Identities = 69/270 (25%), Positives = 109/270 (40%), Gaps = 36/270 (13%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+Q A+D K +P R L L EE ++ + + ++ K K+ A + E+
Sbjct: 55 IQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKKSA-IGEVSRT 113
Query: 68 ANDVRNTLNHLKQWMTPE--------KPGKDIANMLDG--VYIYPDPYGVCLIIGAWNYP 117
A+ +R E G + +P GV L I +NYP
Sbjct: 114 ADIIR--------HTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYP 165
Query: 118 LQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVE 171
+ L+ A A+ GN V+ KP+ S M E P+ QVV G G
Sbjct: 166 VNLAAAKIAPALVTGNTVVFKPATQGSLSGIKMVEALADAGAPE----GIIQVVTGRGSV 221
Query: 172 ETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVR 230
L++H D I +TG T+ G+ + + A + PV LELGGK P + +++L
Sbjct: 222 IGDHLVEHPGIDMITFTGGTTTGERISEKAK--MIPVVLELGGKDPAIVLDDADLKLTAS 279
Query: 231 RFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
+ + G +GQ C A + VQ +
Sbjct: 280 QIVSGAFSYSGQRCTAIKRVF----VQDSV 305
Score = 41.4 bits (98), Expect = 6e-04
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
P + +++L + + G +GQ C A + VQ +
Sbjct: 264 DPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVF----VQDSV 305
Score = 27.5 bits (62), Expect = 9.9
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQ 441
P + +++L + + G +GQ
Sbjct: 265 PAIVLDDADLKLTASQIVSGAFSYSGQ 291
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 142 bits (360), Expect = 3e-37
Identities = 74/268 (27%), Positives = 116/268 (43%), Gaps = 35/268 (13%)
Query: 8 VQNARDTFDS-GKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEF 66
+ A + F ++K E R+R L ++ L E++ +LA D + +
Sbjct: 70 AKAAHEAFQRWSRTKAKE-RKRYLLRIAELIEKHADELAVMECLDAGQVLRIV------- 121
Query: 67 LANDVRNTLNHLK---QWMTPEKPGKDIANMLDG---VYIYPDPYGVCLIIGAWNYPLQL 120
V + ++ + +D Y P G II WN PL L
Sbjct: 122 -RAQVARAAENFAFYAEYAEHAMEDRTF--PVDRDWLYYTVRVPAGPVGIITPWNAPLML 178
Query: 121 SLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GVEETT 174
S A A+A GN V+LKP+E +P +A +AE+ LP + N +V G G E
Sbjct: 179 STWRIAPALAFGNTVVLKPAEWSPFTATKLAEILKEADLPPGVFN----LVQGFGEEAGA 234
Query: 175 ELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFL 233
L+ H + TG T GKIV + A +HL ++ ELGGKSP + + ++E A+ +
Sbjct: 235 ALVAHPLVPLLTLTGETETGKIVMRNAADHLKRLSPELGGKSPALVFADADLERALDAVV 294
Query: 234 WGKCINAGQTCIAPDYILCSRQ-VQAQI 260
+ G+ C A SR V+ +I
Sbjct: 295 FQIFSFNGERCTAS-----SRLLVEEKI 317
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 141 bits (358), Expect = 4e-37
Identities = 80/276 (28%), Positives = 111/276 (40%), Gaps = 47/276 (17%)
Query: 8 VQNARDTFDSG----KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFE 63
V+ AR F G E R R L +L L E ++ LA A + K A L +
Sbjct: 64 VKAARQAFQIGSPWRTMDASE-RGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMD 122
Query: 64 IEFLANDVRNTLNHLKQWM----------TPEKPGKDIANMLDGVYIYPDPYGVCLIIGA 113
+ +R + T G Y +P GVC I
Sbjct: 123 LGGCIKTLR--------YCAGWADKIQGRTIPMDGNFFT------YTRSEPVGVCGQIIP 168
Query: 114 WNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG 168
WN+PL + L A++ GN V++KP+E P +A M L P +V G
Sbjct: 169 WNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPP----GVVNIVPG 224
Query: 169 -GVEETTELLKHR-FDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLYIDSSVNI 225
G + H D + +TGST VGK I A +L V+LELGGKSP + + ++
Sbjct: 225 YGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADL 284
Query: 226 ELAVRRFLWGKCINAGQTCIAPDYILCSRQ-VQAQI 260
+ AV G + GQ CIA SR V+ I
Sbjct: 285 DNAVEFAHQGVFYHQGQCCIA-----ASRLFVEESI 315
Score = 29.8 bits (68), Expect = 1.9
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 25/109 (22%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 365
P + + +++ AV G + GQ CIA SR + + + +AK
Sbjct: 275 PCIVFADADLDNAVEFAHQGVFYHQGQCCIA-----ASRLFVEESIYDEFVRRSVERAKK 329
Query: 366 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD 408
+ + QG + + ++++ L+ S + GG
Sbjct: 330 YVLGNPLTPGVSQGP-----QIDKEQYEKILDLIESGKKEGAKLECGGG 373
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 141 bits (357), Expect = 1e-36
Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 28/262 (10%)
Query: 6 DLVQNARDTFDSG-KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI 64
AR+ + ++ Y R +L +V+L + + D A+ + ++ +I
Sbjct: 47 RAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRNDS-AVDI 105
Query: 65 EFLANDVR------NTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPL 118
+ + +L + ++ GV L I A+N+P
Sbjct: 106 DGGIFTLSYYAKLGASLGEVHALRDGSAESLSKDRSFSAQHVLSPTRGVALFINAFNFPS 165
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL------LPKYLDNDTFQVVLGGVEE 172
AA A+ +G VI+KP+ + M LP ++ G
Sbjct: 166 WGLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPP----GALSIICGSSAG 221
Query: 173 TTELLKH-RFDYIFYTGSTSVGKIVRQAAN--EHLTPVTLELGGKSPLYI-----DSSVN 224
L + FD + +TGS +R + + ++ + + +
Sbjct: 222 L--LDQIRSFDVVSFTGSADTAATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPA 279
Query: 225 IELAVRRFLWGKCINAGQTCIA 246
+L ++ + + +GQ C A
Sbjct: 280 FDLFIKEVVREMTVKSGQKCTA 301
Score = 28.0 bits (63), Expect = 9.1
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 321 SVNIELAVRRFLWGKCINAGQTCIA 345
+ +L ++ + + +GQ C A
Sbjct: 277 TPAFDLFIKEVVREMTVKSGQKCTA 301
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 139 bits (354), Expect = 1e-36
Identities = 66/270 (24%), Positives = 111/270 (41%), Gaps = 39/270 (14%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A + K+ P R L + + +E +++LA LA D K ++A E+E
Sbjct: 40 IDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIKQA-RVEVERS 98
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDG---------VYIYPDPYGVCLIIGAWNYPL 118
+ ++ +P G+ I +N+PL
Sbjct: 99 IGTFK--------LAAFY------VKEHRDEVIPSDDRLIFTRREPVGIVGAITPFNFPL 144
Query: 119 QLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDND-----TFQVVLG-GVEE 172
LS A AIA GNV++ PS AP +A+++ L + ++ G G
Sbjct: 145 NLSAHKIAPAIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVV 204
Query: 173 TTELLKH-RFDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVR 230
E++ + + + I +TGS+ VG+ I ++A + LELGG +P + ++ AV
Sbjct: 205 GDEIVVNEKVNMISFTGSSKVGELITKKAG---FKKIALELGGVNPNIVLKDADLNKAVN 261
Query: 231 RFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
+ G I AGQ CI+ IL V I
Sbjct: 262 ALIKGSFIYAGQVCISVGMIL----VDESI 287
Score = 41.4 bits (98), Expect = 6e-04
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
P + ++ AV + G I AGQ CI+ IL V I
Sbjct: 246 NPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMIL----VDESI 287
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 139 bits (353), Expect = 2e-36
Identities = 79/258 (30%), Positives = 110/258 (42%), Gaps = 35/258 (13%)
Query: 8 VQNARDTFDSG----KSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFE 63
V+ AR F G + R R L +L L E ++ LA D K +
Sbjct: 63 VKAARAAFQLGSPWRRMDASH-RGRLLNRLADLIERDRTYLAALETLDNGKPYVIS---- 117
Query: 64 IEFLANDVRNTLNHLK---QWMTPEKP-GKDIANMLDG---VYIYPDPYGVCLIIGAWNY 116
D+ L L+ W K GK I +DG Y +P GVC I WN+
Sbjct: 118 ---YLVDLDMVLKCLRYYAGWAD--KYHGKTI--PIDGDFFSYTRHEPVGVCGQIIPWNF 170
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GV 170
PL + A+A GNVV++K +E P +A +A L P +V G G
Sbjct: 171 PLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPP----GVVNIVPGFGP 226
Query: 171 EETTELLKHR-FDYIFYTGSTSVGK-IVRQAANEHLTPVTLELGGKSPLYIDSSVNIELA 228
+ H D + +TGST +G+ I A + +L VTLELGGKSP I S +++ A
Sbjct: 227 TAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWA 286
Query: 229 VRRFLWGKCINAGQTCIA 246
V + + N GQ A
Sbjct: 287 VEQAHFALFFNQGQCSCA 304
Score = 29.8 bits (68), Expect = 2.1
Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 365
P I S +++ AV + + N GQ A SR + + + +AK+
Sbjct: 274 PNIIMSDADMDWAVEQAHFALFFNQGQCSCA-----GSRTFVQEDIYDEFVERSVARAKS 328
Query: 366 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHS----SGTIALGGD 408
V + + ++ QG V + F+++ +++ + GG
Sbjct: 329 RVVGNPFDSKTEQGP-----QVDETQFKKILGYINTGKQEGAKLLCGGG 372
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 139 bits (351), Expect = 2e-36
Identities = 45/272 (16%), Positives = 96/272 (35%), Gaps = 25/272 (9%)
Query: 6 DLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAAD----LRKHKQEAVL 61
+L+++A + + ++ + ++ LA + + + K +
Sbjct: 16 NLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQDKVIKNV 75
Query: 62 FEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLS 121
F + + N +++ T +D V P GV + P
Sbjct: 76 FASKHVYNYIKDMK-------TIGMLKEDNEK---KVMEVAVPLGVVAGLIPSTNPTSTV 125
Query: 122 LLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDN-----DTFQVVLG-GVEETTE 175
+ +I AGN ++ P A + ++ + + + ++ T +
Sbjct: 126 IYKTLISIKAGNSIVFSPHPNALKAILETVRIISEAAEKAGCPKGAISCMTVPTIQGTDQ 185
Query: 176 LLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLW 234
L+KH I TG +++ K AA TP G P +I+ S NI AV+ L
Sbjct: 186 LMKHKDTAVILATGGSAMVK----AAYSSGTPAIGVGPGNGPAFIERSANIPRAVKHILD 241
Query: 235 GKCINAGQTCIAPDYILCSRQVQAQILNQAKA 266
K + G C + ++ R + ++ + +
Sbjct: 242 SKTFDNGTICASEQSVVVERVNKEAVIAEFRK 273
Score = 40.4 bits (95), Expect = 0.001
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 313 SAPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA 365
+ P +I+ S NI AV+ L K + G C + ++ R + ++ + +
Sbjct: 221 NGPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRK 273
Score = 30.8 bits (70), Expect = 1.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 415 PLYIDSSVNIELAVRRFLWGKCINAGQL 442
P +I+ S NI AV+ L K + G +
Sbjct: 223 PAFIERSANIPRAVKHILDSKTFDNGTI 250
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 136 bits (344), Expect = 3e-35
Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 15/245 (6%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A F K R + L+ + + + +++A + ++ K ++A E+
Sbjct: 35 LSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARA-EVTKS 93
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAG 127
A H + PE + I P GV L I WN+PL L A
Sbjct: 94 AALCDWYAEHGPAMLNPEPTLVENQQA----VIEYRPLGVILAIMPWNFPLWQVLRGAVP 149
Query: 128 AIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTELLKH-RF 181
+ AGN +LK + A+++A + P + V E ++++ R
Sbjct: 150 ILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPA----GVYGWVNANNEGVSQMINDPRI 205
Query: 182 DYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAG 241
+ TGS G + A L LELGG P + + ++ELAV+ + G+ N G
Sbjct: 206 AAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTG 265
Query: 242 QTCIA 246
Q C A
Sbjct: 266 QVCAA 270
Score = 37.9 bits (89), Expect = 0.006
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 308 VLEAL--SAPLYIDSSVNIELAVRRFLWGKCINAGQTCIA 345
VLE L S P + + ++ELAV+ + G+ N GQ C A
Sbjct: 232 VLE-LGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAA 270
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 135 bits (342), Expect = 5e-35
Identities = 50/245 (20%), Positives = 97/245 (39%), Gaps = 15/245 (6%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A + + + R L + +E++ +LA + ++ K E+ E+E
Sbjct: 32 INLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSESKE-EVELC 90
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSLLPAAG 127
+ +H + + P K D+ N Y GV + WN+PL + A
Sbjct: 91 VSICNYYADHGPEMLKPTKLNSDLGNA----YYLKQSTGVIMACEPWNFPLYQVIRVFAP 146
Query: 128 AIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTELLKH-RF 181
GN ++LK + P SA + A++ P+ + + ++ +++ R
Sbjct: 147 NFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPE----GSLINLYPSYDQLADIIADPRI 202
Query: 182 DYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKCINAG 241
+ TGS G V +AA ++L T+ELGG + + ++ + N G
Sbjct: 203 QGVALTGSERGGSAVAEAAGKNLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDG 262
Query: 242 QTCIA 246
Q C +
Sbjct: 263 QVCTS 267
Score = 37.5 bits (88), Expect = 0.010
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 308 VLEAL--SAPLYIDSSVNIELAVRRFLWGKCINAGQTCIA 345
+E L + + + ++ + N GQ C +
Sbjct: 229 TME-LGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTS 267
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 135 bits (341), Expect = 9e-35
Identities = 53/260 (20%), Positives = 93/260 (35%), Gaps = 23/260 (8%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAAD-------LRKHKQEAV 60
A + R L+ + E D+ + L
Sbjct: 36 ATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIARTA 95
Query: 61 LFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQL 120
++ A+ V + ++ + + P + D + G + GA N+PL
Sbjct: 96 -NQLRLFADVVN-SGSYHQAILDTPNPTRAPLPKPD-IRRQQIALGPVAVFGASNFPLAF 152
Query: 121 SLLP--AAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDND-----TFQVVLGGVEET 173
S A A+AAG VI+K P +++I+AE + + L + F ++ G
Sbjct: 153 SAAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRAL 212
Query: 174 -TELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVT--LELGGKSPLYIDSSVNIELA- 228
L+ H + +TGS G+ + A+E P+ ELG +P +I S A
Sbjct: 213 GQALVSHPEIKAVGFTGSVGGGRALFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKAD 272
Query: 229 -VRRFLWGKCINAGQTCIAP 247
+F+ + GQ C P
Sbjct: 273 LADQFVASMTMGCGQFCTKP 292
Score = 28.4 bits (64), Expect = 5.5
Identities = 10/93 (10%), Positives = 22/93 (23%), Gaps = 7/93 (7%)
Query: 327 AVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQ-GSKHYCRIV 385
+F+ + GQ C P + + Q + L + +
Sbjct: 273 LADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSLIRQQSPSTLLTP-----GI 327
Query: 386 SDKHFQRLKSLVHSSG-TIALGGDMDASDRPLY 417
D + ++ S G +
Sbjct: 328 RDSYQSQVVSRGSDDGIDVTFSQAESPCVASAL 360
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 133 bits (337), Expect = 3e-34
Identities = 67/274 (24%), Positives = 110/274 (40%), Gaps = 45/274 (16%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
A+ E R+ LQ+ EN+ D+ +A + ++ E+E
Sbjct: 50 FDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKS-TIELEQT 108
Query: 68 ANDVRNTLNHLKQW-------------MTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAW 114
+ + + GK IY P GV I +
Sbjct: 109 IAILD--------EAMTYTGELGGVKEVPSDIEGKTN-------KIYRLPLGVISSISPF 153
Query: 115 NYPLQLSLLPAAGAIAAGNVVILKPSEVAPASA-KIMAEL-----LPKYLDNDTFQVVLG 168
N+P+ LS+ A AIA GN V+ KP S I+A+ LP V+L
Sbjct: 154 NFPMNLSMRSIAPAIALGNSVVHKPDIQTAISGGTIIAKAFEHAGLPA----GVLNVMLT 209
Query: 169 GVEETTE-LLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIE 226
V+E + +L + I +TGST+VG+ + + A + LELGG +P + S +++
Sbjct: 210 DVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIAGRAFKRMALELGGNNPFAVLSDADVD 269
Query: 227 LAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
AV ++GK I+ GQ C+ + I+ V +
Sbjct: 270 RAVDAAIFGKFIHQGQICMIINRII----VHQDV 299
Score = 33.7 bits (78), Expect = 0.15
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
P + S +++ AV ++GK I+ GQ C+ + I+ V +
Sbjct: 258 NPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRII----VHQDV 299
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 135 bits (341), Expect = 6e-34
Identities = 60/265 (22%), Positives = 103/265 (38%), Gaps = 36/265 (13%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A+ F + + R L + + + +L+ ++ K +A
Sbjct: 574 IAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWDQAY------- 626
Query: 68 ANDVRNTLNHLK---QWMTPEKPGKDIANMLDG--VYIYPDPYGVCLIIGAWNYPLQLSL 122
DV ++ L+ + M G + + +P GV +I WN+PL +S+
Sbjct: 627 -ADVTEAIDFLEYYAREMI-RLGQPQRVGHAPGELNHYFYEPKGVAAVIAPWNFPLAISM 684
Query: 123 LPAAGAIAAGNVVILKPSEVAPASAKIMAELL-----PKYLDNDTFQVVLG-GVEETTEL 176
A+ AI GN V+ KPS + + EL P+ F G G L
Sbjct: 685 GMASAAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPE----GVFNFTPGRGSVMGDYL 740
Query: 177 LKH-RFDYIFYTGSTSVGKIVRQAANE------HLTPVTLELGGKSPLYIDSSVNIELAV 229
+ H I +TGS G + + A + ++ + E+GGK+ + ID +++ AV
Sbjct: 741 VDHPDISLIAFTGSMETGLRIIERAAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAV 800
Query: 230 RRFLWGKCINAGQTCIAPDYILCSR 254
L+ GQ C A CSR
Sbjct: 801 PHVLYSAFGFQGQKCSA-----CSR 820
Score = 28.1 bits (63), Expect = 9.3
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 315 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR 353
+ ID +++ AV L+ GQ C A CSR
Sbjct: 787 AIIIDDDADLDEAVPHVLYSAFGFQGQKCSA-----CSR 820
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 130 bits (330), Expect = 3e-33
Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 32/256 (12%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEI--- 64
V+ AR+ + P R ++Q+ E Q L + ++ ++ K E + E+
Sbjct: 65 VKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVEG-VGEVQEY 123
Query: 65 ----EFLANDVR----NTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNY 116
++ R + E+ G + +P G+ II A+N+
Sbjct: 124 VDICDYAVGLSRMIGGPI-------LPSERSGHAL-------IEQWNPVGLVGIITAFNF 169
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDND-----TFQVVLGGVE 171
P+ + A A+ GNV + K + + + +++ K L+++ + GG +
Sbjct: 170 PVAVYGWNNAIAMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGAD 229
Query: 172 ETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVR 230
T + K R + + +TGST VGK V E LELGG + + ++ L V
Sbjct: 230 IGTAMAKDERVNLLSFTGSTQVGKQVGLMVQERFGRSLLELGGNNAIIAFEDADLSLVVP 289
Query: 231 RFLWGKCINAGQTCIA 246
L+ AGQ C
Sbjct: 290 SALFAAVGTAGQRCTT 305
Score = 36.0 bits (84), Expect = 0.025
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIA 345
+ ++ L V L+ AGQ C
Sbjct: 274 NAIIAFEDADLSLVVPSALFAAVGTAGQRCTT 305
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 131 bits (330), Expect = 1e-32
Identities = 58/263 (22%), Positives = 92/263 (34%), Gaps = 35/263 (13%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V AR F P R L+Q L E L + K +A+
Sbjct: 556 VAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDAL------- 608
Query: 68 ANDVRNTLNHLK-------QWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQL 120
+++R + + + E + + + GV + I WN+PL +
Sbjct: 609 -SELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTM--RGRGVFVAISPWNFPLAI 665
Query: 121 SLLPAAGAIAAGNVVILKPSEVAPASAKIMAELL-----PKYLDNDTFQVVLGGVEETTE 175
L A+ AGN V+ KP+E P A+ LL PK +V G
Sbjct: 666 FLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPK----SALYLVTGDGRIGAA 721
Query: 176 LLKH-RFDYIFYTGSTSVGKIVRQAANEH---LTPVTLELGGKSPLYIDSSVNIELAVRR 231
L H + +TGST V + + +A + P+ E GG + + D++ E
Sbjct: 722 LTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADD 781
Query: 232 FLWGKCINAGQTCIAPDYILCSR 254
+ +AGQ C A
Sbjct: 782 VVTSAFRSAGQRCSA-----LRL 799
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 125 bits (317), Expect = 2e-31
Identities = 48/260 (18%), Positives = 99/260 (38%), Gaps = 22/260 (8%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEA------VL 61
+ A + F + + R L+ + E + + + + +
Sbjct: 69 CEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPEARLNGERGRTT 128
Query: 62 FEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLS 121
++ A+ + ++L + + P + A + + + P G + GA N+PL S
Sbjct: 129 GQLRLFADHIEK-GDYLDRRVDAAMPERQPAPRQE-IRLVQRPVGPVAVFGASNFPLAFS 186
Query: 122 LLP--AAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLD-----NDTFQVVLGGVEET- 173
A A+AAG V++K P + +I+AE + + F ++ GG +
Sbjct: 187 TAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVG 246
Query: 174 TELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPV--TLELGGKSPLYIDSSVNIELA-- 228
L++H + +TGS + G+ + P+ ELG +P+++ A
Sbjct: 247 HALVQHPHIKAVGFTGSLAGGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAET 306
Query: 229 -VRRFLWGKCINAGQTCIAP 247
+ + + AGQ C P
Sbjct: 307 LGQGWAGSLTMGAGQFCTNP 326
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 116 bits (294), Expect = 2e-28
Identities = 70/271 (25%), Positives = 115/271 (42%), Gaps = 41/271 (15%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A ++ P R L+++ E +++ + + K +Q A E+ F
Sbjct: 50 IDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLA-EVEVAFT 108
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPD-----------PYGVCLIIGAWNY 116
A+ + +M A +G I D GV I WN+
Sbjct: 109 ADYID--------YMAEW------ARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNF 154
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLG-GV 170
P L A A+ GN +++KPSE P +A A++ LP+ F +VLG G
Sbjct: 155 PFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPR----GVFNLVLGRGE 210
Query: 171 EETTELLKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAV 229
EL + + + TGS S G+ + A +++T V LELGGK+P + ++ELAV
Sbjct: 211 TVGQELAGNPKVAMVSMTGSVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAV 270
Query: 230 RRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
+ + + IN+GQ C + + VQ I
Sbjct: 271 KAIVDSRVINSGQVCNCAERVY----VQKGI 297
Score = 31.7 bits (73), Expect = 0.54
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
AP + ++ELAV+ + + IN+GQ C + + VQ I
Sbjct: 256 APAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVY----VQKGI 297
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 104 bits (263), Expect = 2e-24
Identities = 67/266 (25%), Positives = 110/266 (41%), Gaps = 31/266 (11%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
++ A+ + R+ L+ EN+ LA L A+ K A E++
Sbjct: 56 LEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLLSVA-EMEVDVT 114
Query: 68 ANDVRNTLNHLKQWMTPEKP---GKDIANMLDG--VYIYPDPYGVCLIIGAWNYPLQLSL 122
A + + G + + +YI+ P GV + I AWN+PL L+
Sbjct: 115 ATFID--------YGCDNALTIEGDILPSDNQDEKIYIHKVPRGVVVGITAWNFPLALAG 166
Query: 123 LPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEE-TTEL 176
A+ GN ++LKP++ P + + + LP V+ G L
Sbjct: 167 RKIGPALITGNTMVLKPTQETPLATTELGRIAKEAGLPD----GVLNVINGTGSVVGQTL 222
Query: 177 LKH-RFDYIFYTGSTSVGKI-VRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLW 234
+ I TGST GK + +A E++TPV LELGGK+P+ + +++ A LW
Sbjct: 223 CESPITKMITMTGSTVAGKQIYKTSA-EYMTPVMLELGGKAPMVVMDDADLDKAAEDALW 281
Query: 235 GKCINAGQTCIAPDYILCSRQVQAQI 260
G+ N GQ C + + V A +
Sbjct: 282 GRFANCGQVCTCVERLY----VHASV 303
Score = 31.0 bits (71), Expect = 0.91
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
AP+ + +++ A LWG+ N GQ C + + V A +
Sbjct: 262 APMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLY----VHASV 303
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 99.6 bits (249), Expect = 1e-22
Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (15%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V+ + P E RR+ L+ + +EN++++ L + K +EA E+++
Sbjct: 55 VEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWKEA-QGEVDYA 113
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYI---YPD--------PYGVCLIIGAWNY 116
A + + LD I D P GV +I WN+
Sbjct: 114 AGFFD--------YCAKH------ISALDSHTIPEKPKDCTWTVHYRPVGVTGLIVPWNF 159
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVE 171
P+ + + A+AAG ++KP+ P + + LP +V+G
Sbjct: 160 PIGMIAKKLSAALAAGCPSVIKPASETPLTMIAFFSVMDKLDLPD----GMVNLVMGKAS 215
Query: 172 E-TTELLKH-RFDYIFYTGSTSVGKI-VRQAANEHLTPVTLELGGKSPLYIDSSVNIELA 228
L +H + +TGST VG+ + A E + + LELGG +P + ++E A
Sbjct: 216 VIGKVLCEHKDVPMLSFTGSTEVGRKLIVDTA-EQVKKLALELGGNAPFIVFDDADLEAA 274
Query: 229 VRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
+ K GQTC+ + I V ++
Sbjct: 275 ADNLIANKFRGGGQTCVCANRIF----VHEKV 302
Score = 29.8 bits (68), Expect = 1.9
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
AP + ++E A + K GQTC+ + I V ++
Sbjct: 261 APFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIF----VHEKV 302
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 99.1 bits (248), Expect = 2e-22
Identities = 71/272 (26%), Positives = 117/272 (43%), Gaps = 43/272 (15%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
++ A+ + + K + R L++ L N DLA L + K EA EI +
Sbjct: 56 IEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLAEA-KGEIAYA 114
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYI---YPD--------PYGVCLIIGAWNY 116
A+ + W E + G + + P GVC I WN+
Sbjct: 115 ASFIE--------WFAEE------GKRVAGDTLPTPDANKRIVVVKEPIGVCAAITPWNF 160
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVE 171
P + A+AAG +++KP+E P SA MA L +PK VV+G +
Sbjct: 161 PAAMIARKVGPALAAGCPIVVKPAESTPFSALAMAFLAERAGVPK----GVLSVVIGDPK 216
Query: 172 E-TTELLKH-RFDYIFYTGSTSVGKI-VRQAANEHLTPVTLELGGKSPLYIDSSVNIELA 228
TE+ + + +TGST+VG++ + Q+A + +TLELGG +P + +++ A
Sbjct: 217 AIGTEITSNPIVRKLSFTGSTAVGRLLMAQSA-PTVKKLTLELGGNAPFIVFDDADLDAA 275
Query: 229 VRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
V + K N GQTC+ + V ++
Sbjct: 276 VEGAIASKYRNNGQTCVCTNRFF----VHERV 303
Score = 30.2 bits (69), Expect = 1.6
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
AP + +++ AV + K N GQTC+ + V ++
Sbjct: 262 APFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFF----VHERV 303
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 98.8 bits (247), Expect = 2e-22
Identities = 68/272 (25%), Positives = 114/272 (41%), Gaps = 43/272 (15%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ + +K + R L++ L N D+A + ++ K EA E+ +
Sbjct: 76 IDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPLAEA-RGEVLYA 134
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYI---YPD--------PYGVCLIIGAWNY 116
A+ + W E A + G I P GV I WN+
Sbjct: 135 ASFIE--------WFAEE------AKRVYGDTIPAPQNGQRLTVIRQPVGVTAAITPWNF 180
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVE 171
P + AA A+AAG +I++P+++ P +A + L +P Q+V G
Sbjct: 181 PAAMITRKAAPALAAGCTMIVRPADLTPLTALALGVLAEKAGIPA----GVLQIVTGKAR 236
Query: 172 E-TTELLKH-RFDYIFYTGSTSVGKI-VRQAANEHLTPVTLELGGKSPLYIDSSVNIELA 228
E EL + + +TGST VG++ + Q A + ++LELGG +P + +++ A
Sbjct: 237 EIGAELTSNDTVRKLSFTGSTEVGRLLMAQCA-PTIKRISLELGGNAPFIVFDDADLDAA 295
Query: 229 VRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
V + K NAGQTC+ + I VQ +
Sbjct: 296 VDGAMVSKYRNAGQTCVCANRIY----VQRGV 323
Score = 30.2 bits (69), Expect = 1.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
AP + +++ AV + K NAGQTC+ + I VQ +
Sbjct: 282 APFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIY----VQRGV 323
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 98.4 bits (246), Expect = 3e-22
Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 43/272 (15%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
+ A + ++ + R L+ L E+Q DLA + + K EA EI +
Sbjct: 53 IDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEA-KGEISYA 111
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYI---YPD--------PYGVCLIIGAWNY 116
A+ + W E + G I D P GV I WN+
Sbjct: 112 ASFIE--------WFAEE------GKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNF 157
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVE 171
P + A A+AAG ++LKP+ P SA +AEL +P F VV G
Sbjct: 158 PAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPA----GVFNVVTGSAG 213
Query: 172 E-TTELLKH-RFDYIFYTGSTSVGKI-VRQAANEHLTPVTLELGGKSPLYIDSSVNIELA 228
EL + + +TGST +G+ + Q A + + V+LELGG +P + +++ A
Sbjct: 214 AVGNELTSNPLVRKLSFTGSTEIGRQLMEQCA-KDIKKVSLELGGNAPFIVFDDADLDKA 272
Query: 229 VRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
V L K NAGQTC+ + + VQ +
Sbjct: 273 VEGALASKFRNAGQTCVCANRLY----VQDGV 300
Score = 30.6 bits (70), Expect = 1.3
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
AP + +++ AV L K NAGQTC+ + + VQ +
Sbjct: 259 APFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLY----VQDGV 300
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 98.0 bits (245), Expect = 4e-22
Identities = 77/275 (28%), Positives = 118/275 (42%), Gaps = 46/275 (16%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLFEIEFL 67
V+ A + F + + R L++ L +N+ DLA + A+ K +EA EI +
Sbjct: 54 VRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEA-HGEILYS 112
Query: 68 ANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYI---YPD--------PYGVCLIIGAWNY 116
A + W + E A + G I D P GV +I WN+
Sbjct: 113 AFFLE--------WFSEE------ARRVYGDIIHTPAKDRRALVLKQPIGVAAVITPWNF 158
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVE 171
P + A+AAG V++KP+E P SA +AEL +P + V+ +
Sbjct: 159 PSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPS----GVYNVIPCSRK 214
Query: 172 ETTE----LLKH-RFDYIFYTGSTSVGKI-VRQAANEHLTPVTLELGGKSPLYIDSSVNI 225
E + I +TGST+ GKI + AA + V++ELGG +P + S N+
Sbjct: 215 NAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAA-NSVKRVSMELGGLAPFIVFDSANV 273
Query: 226 ELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 260
+ AV + K N GQTC+ + L VQ I
Sbjct: 274 DQAVAGAMASKFRNTGQTCVCSNQFL----VQRGI 304
Score = 31.0 bits (71), Expect = 0.96
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 314 APLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI 359
AP + S N++ AV + K N GQTC+ + L VQ I
Sbjct: 263 APFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFL----VQRGI 304
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 91.9 bits (229), Expect = 4e-20
Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 26/251 (10%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAV------L 61
Q A + F + R R L +L +++++LA+ + + K+ +EA+ +
Sbjct: 49 AQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGI 108
Query: 62 FEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLS 121
+EF A L + D+ + Y P GV I +N+P+ +
Sbjct: 109 ENVEFAAG-----APSLMMGDSLASIATDV----E-AANYRYPIGVVGGIAPFNFPMMVP 158
Query: 122 LLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTEL 176
AIA GN ILKPSE P + + EL LPK F VV G + +
Sbjct: 159 CWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPK----GVFNVVYGAHDVVNGI 214
Query: 177 LKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWG 235
L+H I + GS VG+ V + +E+L V G K+ + + N+E V +
Sbjct: 215 LEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGA 274
Query: 236 KCINAGQTCIA 246
+AG+ C+A
Sbjct: 275 AFGSAGERCMA 285
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 90.4 bits (225), Expect = 2e-19
Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 26/251 (10%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAV------L 61
V++A+ + + R R + V+L +N +LA L+ + K +A L
Sbjct: 70 VESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTIDDAKGDIVRGL 129
Query: 62 FEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLS 121
EF+ + HL++ E G I D +Y P G+ I +N+P +
Sbjct: 130 EVCEFVIG-----IPHLQKSEFTEGAGPGI----D-MYSIRQPVGIGAGITPFNFPGMIP 179
Query: 122 LLPAAGAIAAGNVVILKPSEVAPASAKIMAEL-----LPKYLDNDTFQVVLGGVEETTEL 176
+ A AIA GN ILKPSE P+ +AEL LP VV G +
Sbjct: 180 MWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPA----GILNVVNGDKGAVDAI 235
Query: 177 LKH-RFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWG 235
L H + + GST + + V A + G K+ + I +++ A +
Sbjct: 236 LTHPDIAAVSFVGSTPIARYVYGTAAMNGKRAQCFGGAKNHMIIMPDADLDQAANALIGA 295
Query: 236 KCINAGQTCIA 246
+AG+ C+A
Sbjct: 296 GYGSAGERCMA 306
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 81.2 bits (201), Expect = 1e-16
Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 23/164 (14%)
Query: 104 PYGVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELL-----PKYL 158
G I +N+ L A GNVV+ KPS+ A ++ + +L P
Sbjct: 200 LEGFVAAISPFNFTAIGGNLAGA-PALMGNVVLWKPSDTAMLASYAVYRILREAGLPP-- 256
Query: 159 DNDTFQVVLG-GVEETTELLKH-RFDYIFYTGSTSVGK-IVRQAAN-----EHLTPVTLE 210
+ Q V G + I +TGS K + RQ A + E
Sbjct: 257 --NIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQVAQNLDRFRTFPRLAGE 314
Query: 211 LGGKSPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR 254
GGK+ ++ SS +++ V L GQ C A CSR
Sbjct: 315 CGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSA-----CSR 353
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 1e-09
Identities = 65/502 (12%), Positives = 150/502 (29%), Gaps = 150/502 (29%)
Query: 37 YEENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLD 96
+E + D+ ++A F F D ++ + K ++ E+ +D
Sbjct: 9 FETGEHQYQYK---DILSVFEDA--FVDNF---DCKDVQDMPKSILSKEE--------ID 52
Query: 97 GVYIYPDPY-GVCLIIGAWNYPLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELL- 154
+ + D G + W ++ K E+ K + E+L
Sbjct: 53 HIIMSKDAVSGTLRLF--W-------------------TLLSKQEEMV---QKFVEEVLR 88
Query: 155 PKY--LDNDTFQVVLGGVEETTELLKHRFDYIFYTGSTSVGKI----------VRQAANE 202
Y L + T + + D + Y + K +RQA E
Sbjct: 89 INYKFL-MSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 203 HLTP---VTLE--LG-GKSPLYIDSSVNIELAVRRF----LWGKCINAGQTCIAPDYILC 252
L P V ++ LG GK+ + +D ++ ++ + W +N C +P+ +L
Sbjct: 147 -LRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFW---LNLKN-CNSPETVL- 199
Query: 253 SRQVQAQILNQAKAVLDSWYTEQE------ILPRQGLAYHGKYSFNTFTHRKSCLVKD-- 304
++L + +D +T + L + + + + LV
Sbjct: 200 ------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 305 YNP-VLEAL-------------SAPLYIDSSVNIELAVRRFLWG-----------KCINA 339
N A ++ ++ +++ K ++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 340 GQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHS 399
+ + + + + + I + L +W KH + +L +++ S
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWKHV-------NCDKLTTIIES 361
Query: 400 SGTIALGGDMDASD-RPLYID-----SSVNIELAVRRFLWGKCINAGQLTRGPGWDRLEY 453
S + ++ ++ R ++ S +I + +W +
Sbjct: 362 S--LN---VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD---------------VIK 401
Query: 454 HGKYSFVTFTHRKSCLVKDYNP 475
V H+ S + K
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKE 423
Score = 53.3 bits (127), Expect = 1e-07
Identities = 76/458 (16%), Positives = 134/458 (29%), Gaps = 168/458 (36%)
Query: 6 DLVQNAR--DTFDSGKSKPYEFRRRQLQQLV--RLYEENQQDLANALAADLRKHKQEAVL 61
VQNA+ + F+ K L+ R + + + L+A H
Sbjct: 251 LNVQNAKAWNAFN-LSCK----------ILLTTR-----FKQVTDFLSAATTTHI----- 289
Query: 62 FEIEFLANDVRNTLNHLKQWMTPEKPGKDI-ANMLDGVYIYPD--PYGVCLI-------I 111
+L+H +TP++ K + LD P P V I
Sbjct: 290 ------------SLDHHSMTLTPDE-VKSLLLKYLD---CRPQDLPREVLTTNPRRLSII 333
Query: 112 GA--------WNYPLQLSLLPAAGAIAAGNVVILKPSE---------VAPASAKIMAELL 154
W+ ++ I + + +L+P+E V P SA I LL
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 155 PKYLDNDTFQVVLGGVEETTELLKHRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGK 214
+ V+ +L K + T+ +
Sbjct: 393 SLIWFDVIKSDVM---VVVNKLHK------------------YSLVEKQPKESTISIPS- 430
Query: 215 SPLYIDSSVNIE--LAVRRFLWGKCINAGQTCIAPDY-ILCSRQVQAQILNQAKAVLDS- 270
+Y++ V +E A+ R ++ Y I + I LD
Sbjct: 431 --IYLELKVKLENEYALHR----SIVDH--------YNIPKTFDSDDLIPPY----LDQY 472
Query: 271 WYTEQEILPRQGLAYHGKYSFNTFTHRKSCLVKDYNPVLEALSAPLYIDSSVNIELAVRR 330
+Y + +H L +P L +++D R
Sbjct: 473 FY--------SHIGHH--------------LKNIEHPERMTLFRMVFLDF---------R 501
Query: 331 FLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSK-HYCRIVSD-K 388
FL K + A IL L Q K +Y + + Y R+V+
Sbjct: 502 FLEQKIRHDSTAWNASGSIL-------NTLQQLK-----FYKPYICDNDPKYERLVNAIL 549
Query: 389 HF--QRLKSLVHSSGT----IALGGDMDASDRPLYIDS 420
F + ++L+ S T IAL M + ++ ++
Sbjct: 550 DFLPKIEENLICSKYTDLLRIAL---MAEDE-AIFEEA 583
Score = 51.4 bits (122), Expect = 6e-07
Identities = 66/469 (14%), Positives = 125/469 (26%), Gaps = 154/469 (32%)
Query: 39 ENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGV 98
E Q L + + + I+ + ++ L L + KP ++ +L V
Sbjct: 200 EMLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLK----SKPYENCLLVLLNV 253
Query: 99 YIYPDPYGVCLIIGAWNYPLQL-------SLLPAAGAIAAGNVVILKPSEV-APASAKIM 150
+ A+N ++ + A ++ + S P K
Sbjct: 254 Q---NAK----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-- 304
Query: 151 AELLPKYLDNDTFQ----------VVLGGVEETTELLKHRFDYIFYTGSTSVGKIVRQAA 200
LL KYLD L + E+ +D + + I+ +++
Sbjct: 305 -SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESS 362
Query: 201 NEHLTPVTLELGGKSPLYID-----SSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQ 255
L P ++ S +I + +W I +
Sbjct: 363 LNVLEPAEYR-----KMFDRLSVFPPSAHIPTILLSLIWFDVI---------------KS 402
Query: 256 VQAQILNQ--AKAVLDSWYTEQEI-LPRQGLAYHGKYSFNTFTHRKSCLVKDYNPVLEAL 312
++N+ ++++ E I +P L K HR +V YN
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIP---- 456
Query: 313 SAPLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDS-WY 371
+ F I P Y LD +Y
Sbjct: 457 ----------------KTFDSDDLI--------PPY------------------LDQYFY 474
Query: 372 TEQVQGSKH--YCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRPLYIDSSVNIELAVR 429
+ H + H LK++ H + R +++D
Sbjct: 475 S-------HIGH-------H---LKNIEH--------PERMTLFRMVFLDF--------- 500
Query: 430 RFLWGKCINAGQLTRGPGW-----DRLEYHGKYSFVTFTHRKSCLVKDY 473
RFL K + G +L+++ Y + LV
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-LVNAI 548
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 2e-09
Identities = 89/494 (18%), Positives = 145/494 (29%), Gaps = 192/494 (38%)
Query: 4 FGDLVQ-NARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLF 62
FG Q N D F+ E L+ L + Y DL A L + + +
Sbjct: 160 FGG--QGNTDDYFE-------E-----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 63 EIEFLANDVRNTLNHLKQWMT-PE-KPGKDIANMLDGVYI-YPDPYGVCLIIGAWNYPLQ 119
E F LN + +W+ P P KD L + I P +IG +Q
Sbjct: 206 EKVF-----TQGLN-ILEWLENPSNTPDKDY---LLSIPISCP-------LIGV----IQ 245
Query: 120 LS----------LLPA------AGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTF 163
L+ P GA ++ + VA A ++F
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV---TAVAIAETD----------SWESF 292
Query: 164 QVVLGGVEETTELLKHRFDYIFYTGSTSVGKIVR--QAA-NEHLTPVTLE------LGGK 214
+ + +F+ G VR +A N L P LE G
Sbjct: 293 ------FVSVRKAIT----VLFFIG-------VRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 215 SPL-------------YIDSSVNIELAVRRFLWGKCINAGQTCI---APD--YILCS--R 254
SP+ Y++ N L + + +N + + P Y L R
Sbjct: 336 SPMLSISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 255 QVQAQI-LNQAKAVLDSWYTEQEILPRQGLAYHGKYSFNTFTHRKSCLVKDYNPVLEALS 313
+ +A L+Q++ P F+ RK + PV +
Sbjct: 395 KAKAPSGLDQSRI------------P--------------FSERKLKFSNRFLPV----A 424
Query: 314 AP----LYIDSSVNI--ELAVRRFLW--------------GKCINAGQTCIAPDYILCSR 353
+P L + +S I +L + G + I+ +
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER--IVD- 481
Query: 354 QVQAQILNQAKAVLDSWYTEQVQGSKHYCRIVSDKHF-----QRLKSLVHSS--GT---I 403
I+ + W T + H I+ D F L L H + GT +
Sbjct: 482 ----CIIRLP---VK-WETTTQFKATH---IL-D--FGPGGASGLGVLTHRNKDGTGVRV 527
Query: 404 ALGGDMDASDRPLY 417
+ G +D + Y
Sbjct: 528 IVAGTLDINPDDDY 541
Score = 58.5 bits (141), Expect = 4e-09
Identities = 80/514 (15%), Positives = 154/514 (29%), Gaps = 168/514 (32%)
Query: 4 FGDLVQNARDTF--DSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVL 61
F ++ + F D + P E + L + L E ++ + + L E
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV---LNLCLTE--- 90
Query: 62 FEIEFLA-NDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIG-AWNYPLQ 119
FE +L ND+ L ++ + + + Y ++ ++
Sbjct: 91 FENCYLEGNDIHALAAKL-----LQENDTTLVKTKELIKNY---ITARIMAKRPFDKKSN 142
Query: 120 LSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVLGG---VEET-TE 175
+L A GN A+++A + GG ++ E
Sbjct: 143 SALFRAV---GEGN-------------AQLVA--------------IFGGQGNTDDYFEE 172
Query: 176 LLKHRFDYIFYTGSTSVGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWG 235
L ++ T VG +++ +A E L+ + ++ +NI W
Sbjct: 173 LRD-----LYQTYHVLVGDLIKFSA-ETLSELIRTTLDAEKVF-TQGLNIL------EWL 219
Query: 236 KCINAGQTCIAPD-YILCSRQV--------Q-AQILNQAKAVLDSWYTEQEILPR-QGLA 284
+ N T PD L S + Q A + AK +L +T E+ +G
Sbjct: 220 E--NPSNT---PDKDYLLSIPISCPLIGVIQLAHYVVTAK-LLG--FTPGELRSYLKGAT 271
Query: 285 YHGKY-----------SFNTFTHRKSCLVKDYNPVLEALSAPLYIDSSVNIELAVRRFLW 333
H + S+ +F + V +A++ +I VR
Sbjct: 272 GHSQGLVTAVAIAETDSWESF----------FVSVRKAITVLFFI--------GVR---- 309
Query: 334 GKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSKHY---CRIVSDKHF 390
P+ L ++ DS E +G ++ +
Sbjct: 310 ------CYEA-YPNTSLPPSILE-----------DSL--ENNEGVPSPMLSISNLTQEQV 349
Query: 391 QRLKSLVHSSGTIALGGDMDASDRPLYIDSSVNIELAVRRF--------LWGKCINAGQL 442
Q + +S + + + I S VN + L+G + +
Sbjct: 350 QDYVNKTNSHL---------PAGKQVEI-SLVN---GAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 443 TRGPGWDRLEYHGKYSFVTFTHRKSCLVKDYNPV 476
G D+ S + F+ RK + PV
Sbjct: 397 KAPSGLDQ-------SRIPFSERKLKFSNRFLPV 423
Score = 40.4 bits (94), Expect = 0.001
Identities = 54/281 (19%), Positives = 84/281 (29%), Gaps = 90/281 (32%)
Query: 36 LYEENQQDLANAL--AADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDI-A 92
LY+ + A + AD H ++ F I + V N +L EK GK I
Sbjct: 1635 LYKTS--KAAQDVWNRAD--NHFKDTYGFSI---LDIVINNPVNLTIHFGGEK-GKRIRE 1686
Query: 93 NMLDGVY-IYPDPYGVCL-IIGAWNYPLQL-------SLL-------PAAGAIAAGNVVI 136
N ++ D I N LL PA +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA---LTLMEKAA 1743
Query: 137 ---LKPSEVAPASAKIMA-----ELLPKY--LDNDTFQVVLGGV---EETTELLKHRFDY 183
LK + PA A A E Y L L V E E++ +R
Sbjct: 1744 FEDLKSKGLIPADA-TFAGHSLGE----YAAL------ASLADVMSIESLVEVVFYR--- 1789
Query: 184 IFYTGSTSVGKIVRQAANEHLTPVTLELGGKS-------PLYIDSSVNIELAVRRFLWGK 236
G ++ A ELG + P + +S + E A++ +
Sbjct: 1790 ---------GMTMQVAVPRD------ELGRSNYGMIAINPGRVAASFSQE-ALQYVVERV 1833
Query: 237 CINAGQTC-IA----PD--YILCSRQVQAQILNQAKAVLDS 270
G I + Y+ + ++A L+ VL+
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYV-AAGDLRA--LDTVTNVLNF 1871
Score = 32.3 bits (73), Expect = 0.39
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 18/93 (19%)
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKYL----DN-DTFQVVLGG----VEETTE 175
AI G V E + + + + N + Q V G ++ T
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 176 LLKH----RFDYIFYTGSTSVGKIVRQAANEHL 204
+L + D I S S+ ++ HL
Sbjct: 1868 VLNFIKLQKIDIIELQKSLSLEEV-----EGHL 1895
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.014
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 352 SRQVQAQILNQAKAVLDSWY---TEQVQGSKHYCRIVSDKHF--QR 392
S+ ++ + +AK L+ W +EQV+ +K RI +DK F Q
Sbjct: 105 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI-ADKAFYQQP 149
Score = 30.1 bits (67), Expect = 1.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 253 SRQVQAQILNQAKAVLDSWYTEQE 276
S+ ++ + +AK L+ W Q
Sbjct: 105 SKVMEQEWREKAKKDLEEWNQRQS 128
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 34.9 bits (81), Expect = 0.053
Identities = 59/294 (20%), Positives = 96/294 (32%), Gaps = 88/294 (29%)
Query: 38 EENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDG 97
N++DL A +L R +L + K + ++ G
Sbjct: 73 LANKKDLEEA-----EGRLAAPLL--------K-RLSL-------STSK----LNSLAIG 107
Query: 98 V----YIYPDPYGVCLIIGAWNYP--LQLS-------------------LLPAAG-AIAA 131
+ D G ++ L+L L A AIA+
Sbjct: 108 LRQIAASSQDSVGR--VLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAIAS 165
Query: 132 GNVVILKPSEVAPASAKIMAELLPKYLDN----DTFQVVLGGVEETTELLKHR--FDYIF 185
GN ++LK + A S +I+ L + L + Q+V EE +L + D I
Sbjct: 166 GNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLV-NTREEVEDLCRLDKMIDLII 224
Query: 186 YTGSTS-VGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGKC-----IN 239
GS+ V I + A PV G +Y+DS +++ R KC N
Sbjct: 225 PRGSSQLVRDIQKAAKG---IPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACN 281
Query: 240 AGQTC-----IAPDYI-------LCSRQVQ-------AQILNQAKAVLDSWYTE 274
A +T + + L QV+ A L + + + S TE
Sbjct: 282 ALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSEVKSLRTE 335
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.11
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
Query: 27 RRQLQQL---VRLYEENQQDLANALA 49
++ L++L ++LY + D A ALA
Sbjct: 19 KQALKKLQASLKLYAD---DSAPALA 41
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 30.7 bits (70), Expect = 1.3
Identities = 46/230 (20%), Positives = 77/230 (33%), Gaps = 67/230 (29%)
Query: 38 EENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDG 97
E N+ DLA A L +++L R L +K ML G
Sbjct: 58 EANKIDLAVAKETGL----ADSLL--------K-RLDLF------KGDK----FEVMLQG 94
Query: 98 ---VYIYPDPYGVCLIIGAWNYP--LQLS-------------------LLPAAG-AIAAG 132
V DP G + A L L + +I +G
Sbjct: 95 IKDVAELEDPVGK--VKMARELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSG 152
Query: 133 NVVILKPSEVAPAS----AKIMAELLPKY-----LDNDTFQVVLGGVEETTELLKHR--F 181
N ILK + + + AKI+ + + ++ + + Q++ ++ ++LL
Sbjct: 153 NAAILKGGKESVNTFREMAKIVNDTIAQFQSETGVPVGSVQLI-ETRQDVSDLLDQDEYI 211
Query: 182 DYIFYTGSTS-VGKIVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVR 230
D + GS + V KI PV G +Y+D ++ A R
Sbjct: 212 DLVVPRGSNALVRKIKDTTK----IPVLGHADGICSIYLDEDADLIKAKR 257
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G*
1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G*
1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G*
2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Length = 272
Score = 29.8 bits (68), Expect = 1.7
Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVL 167
+ + +A ++ I + A ++ L N + +
Sbjct: 173 TEEKPIFSLDTISSAESMSIYDDID-----ADVLRNYQEYSLANIIYYSLK 218
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone,
flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP:
a.24.19.1 PDB: 1ory_A
Length = 130
Score = 28.0 bits (62), Expect = 3.3
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 31 QQLVR-LYEENQQDLANALAADLRKHKQEAVLFEIEFLANDVRNTLNHLKQWMTPEKPGK 89
+ + LY++ + L A+ + ++ E +E + V + ++ LK ++ EK GK
Sbjct: 19 LEQIILLYDKAIECLERAIEIYDQVNELEKRKEFVENIDR-VYDIISALKSFLDHEK-GK 76
Query: 90 DIANMLDGVYIY 101
+IA LD +Y
Sbjct: 77 EIAKNLDTIYTI 88
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 28.9 bits (64), Expect = 4.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 195 IVRQAANEHLTPVTLELGGKSPLYIDSSVNIELAVRRFLWGK 236
I+R+ A E PV L GK DS+V + LA + F GK
Sbjct: 38 IIREVAAEFDNPVMLYSIGK-----DSAVMLHLARKAFFPGK 74
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative
splicing, coiled coil, SH3 domain, endocytosis,
structural genomics, NPPSFA; 2.49A {Homo sapiens}
Length = 240
Score = 28.5 bits (63), Expect = 4.8
Identities = 8/50 (16%), Positives = 23/50 (46%)
Query: 8 VQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQ 57
++ R +D K + + +++Q V +EE+++ ++ L +
Sbjct: 145 LEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERSMFNFLENDVE 194
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization,
four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo
sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Length = 213
Score = 28.2 bits (62), Expect = 5.3
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 2/110 (1%)
Query: 374 QVQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRPLYIDSSVNIELAVRRFLW 433
+ Y + FQ L + I + +DR ++ + +I A++ L
Sbjct: 77 AADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELL- 135
Query: 434 GKCINAGQLTRGPGWDRLEYHGKYSFVTFTHRKSCLVKDYNPVLEALSAF 483
+N R H K FV ++ S +K Y +A++ F
Sbjct: 136 -DTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAINVF 184
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic
binding protein, pectin degradation, trigalacturonic
acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB:
2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Length = 408
Score = 28.2 bits (63), Expect = 6.3
Identities = 18/123 (14%), Positives = 29/123 (23%), Gaps = 30/123 (24%)
Query: 54 KHKQEAVLFEIEFLAND------------------VRNTLNHLKQWMTPEKPGKDIANML 95
KH QE+ + I FL N L + + L
Sbjct: 295 KHPQESAML-INFLLNSKEGVEALGLERGVPLSATAVTQLRASGVIKDEDPSVAGLNMAL 353
Query: 96 DGVYIYPDPYGVCLIIGAWNYP-LQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELL 154
+ + ++ P + A I G E A K +L
Sbjct: 354 ELPHKMT-------TSPYFDDPQIVSLFGDAIQYIDYGQ---KTVQETAEYFNKQGDRIL 403
Query: 155 PKY 157
+
Sbjct: 404 KRA 406
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
structura genomics, PSI-2, protein structu initiative;
HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Length = 343
Score = 28.0 bits (63), Expect = 8.5
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 125 AAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLD----NDTFQVVLGGVEETTELLK 178
A A G IL A + + L P ++ L G+E ++L
Sbjct: 175 LTVARALGKPAILDG---DVAPVETLEGLAP-AATHIVFSEPAATRLTGLETVKDMLP 228
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding,
autocatal cleavage, DNA replication, DNA-binding,
endonuclease; 1.90A {Mycobacterium tuberculosis}
Length = 200
Score = 27.2 bits (61), Expect = 8.6
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 379 KHYCRIVSDKHFQRLKSLVHSSGTIA 404
+Y IV++K R LV + +
Sbjct: 120 GYYASIVAEKALLR--RLVEAGTRVV 143
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas
aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Length = 298
Score = 27.8 bits (61), Expect = 9.0
Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 34/133 (25%)
Query: 3 NFGDLVQNARDTFDSGKSKPYEFRRRQLQQLVRLYEENQQDLANALAADLRKHKQEAVLF 62
+ DL+Q+ R F + L R + R H A L+
Sbjct: 145 HIADLLQSDRRALQLADIDAQRFSQ----YLKRSLLDA------------RDHGLPACLY 188
Query: 63 EIEFLANDVRNTLNHLKQWMTPEKPGKDIANMLDGVYIYPDPYGVCLIIGAWNYPLQLSL 122
E +++ + + G D+ + + L L
Sbjct: 189 AFELTDARYGEE---VQRLLEGSQRGLDV---------------QLRLRNDEGRRVLLVL 230
Query: 123 LPAAGAIAAGNVV 135
LP A + +
Sbjct: 231 LPLTSAEGSQGYL 243
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding,
F(O), F(1), mitochondr inner membrane, transmembrane;
HET: ANP; 3.01A {Saccharomyces cerevisiae}
Length = 311
Score = 27.6 bits (62), Expect = 9.2
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 117 PLQLSLLPAAGAIAAGNVVILKPSEVAPASAKIMAELLPKYLDNDTFQVVL 167
P + + A + + + A + +L L N +
Sbjct: 210 PSEKPIFNAKTIEQSPSFGKFEIDT----DANVPRDLFEYTLANQMLTAMA 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,465,226
Number of extensions: 446021
Number of successful extensions: 1395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1263
Number of HSP's successfully gapped: 136
Length of query: 484
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 387
Effective length of database: 3,993,456
Effective search space: 1545467472
Effective search space used: 1545467472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)