BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15675
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ML5|A Chain A, Crystal Structure Of The C183sC217S MUTANT OF HUMAN CA VII
           IN COMPLEX With Acetazolamide
          Length = 269

 Score = 31.6 bits (70), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 88  SGRLMVGLRWWNYVDDQGKSHW--VFESRKGDLQNRVNGTEARIFWTSLIVCPVMWALFL 145
           S   M G   W Y  D G SHW  ++   +GD Q+ +N     I  +  +  P +  L L
Sbjct: 2   SPNSMTGHHGWGYGQDDGPSHWHKLYPIAQGDRQSPIN-----IISSQAVYSPSLQPLEL 56


>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
          Length = 992

 Score = 30.0 bits (66), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 53  LSYMFTGLFSSSGFIASFVFIVLLLSMDFWTVKNISGRLMVGLRWWNYVDDQGKSHWVFE 112
           ++Y   G+  + G    F + V+L    F  +  +  R+    RW N V+D     W +E
Sbjct: 821 MAYGQIGMIQALG--GFFTYFVILAENGFLPIHLLGLRVNWDDRWINDVEDSYGQQWTYE 878

Query: 113 SRKGDLQNRVNGTEARIFWTSLIVCPVMWA 142
            RK      V  T    F+ +++V  V WA
Sbjct: 879 QRK-----IVEFTCHTPFFVTIVV--VQWA 901


>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
 pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
          Length = 998

 Score = 30.0 bits (66), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 53  LSYMFTGLFSSSGFIASFVFIVLLLSMDFWTVKNISGRLMVGLRWWNYVDDQGKSHWVFE 112
           ++Y   G+  + G    F + V+L    F  +  +  R+    RW N V+D     W +E
Sbjct: 827 MAYGQIGMIQALG--GFFTYFVILAENGFLPIHLLGLRVNWDDRWINDVEDSYGQQWTYE 884

Query: 113 SRKGDLQNRVNGTEARIFWTSLIVCPVMWA 142
            RK      V  T    F+ +++V  V WA
Sbjct: 885 QRK-----IVEFTCHTPFFVTIVV--VQWA 907


>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
           E2.2k+.Pi State
 pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
           Potassium And Ouabain
          Length = 1028

 Score = 29.6 bits (65), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 53  LSYMFTGLFSSSGFIASFVFIVLLLSMDFWTVKNISGRLMVGLRWWNYVDDQGKSHWVFE 112
           ++Y   G+  + G    F + V+L    F  +  I  R+    RW + V+D     W +E
Sbjct: 857 MAYGQIGMIQALG--GFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQQWTYE 914

Query: 113 SRKGDLQNRVNGTEARIFWTSLIVCPVMWA 142
            RK      V  T    F+ S++V  V WA
Sbjct: 915 QRK-----IVEFTCHTSFFISIVV--VQWA 937


>pdb|3MDZ|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Vii [isoform
           1], Ca7
          Length = 281

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 95  LRWWNYVDDQGKSHW--VFESRKGDLQNRVNGTEARIFWTSLIVCPVMWALFL 145
           +  W Y  D G SHW  ++   +GD Q+ +N     I  +  +  P +  L L
Sbjct: 23  MHGWGYGQDDGPSHWHKLYPIAQGDRQSPIN-----IISSQAVYSPSLQPLEL 70


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.142    0.481 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,639,539
Number of Sequences: 62578
Number of extensions: 212248
Number of successful extensions: 598
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 5
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)