Query psy15675
Match_columns 202
No_of_seqs 110 out of 243
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 18:41:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pcf_A P15, transcriptional co 19.4 80 0.0027 21.7 2.8 24 83-107 12-35 (66)
2 3jsr_A ALL0216 protein; struct 17.8 22 0.00074 27.6 -0.5 11 78-88 39-49 (119)
3 2lx0_A Membrane fusion protein 13.4 1.1E+02 0.0037 18.1 1.9 20 67-86 9-28 (32)
4 3hts_B Heat shock transcriptio 11.6 68 0.0023 23.7 0.8 18 167-184 68-85 (102)
5 2p63_A Cell division control p 10.8 1.1E+02 0.0036 20.7 1.4 22 30-51 14-35 (56)
6 3q0b_X Histone-lysine N-methyl 9.2 3.2E+02 0.011 21.7 4.0 28 96-123 135-162 (167)
7 1nrp_R Receptor based peptide 8.3 95 0.0032 17.6 0.4 7 3-9 15-21 (26)
8 1nro_R Receptor based peptide 7.5 1.1E+02 0.0037 17.5 0.4 7 3-9 15-21 (27)
9 3no2_A Uncharacterized protein 5.7 2.7E+02 0.0093 22.3 2.1 19 98-116 246-264 (276)
10 2kp6_A Uncharacterized protein 5.5 1.5E+02 0.005 21.4 0.2 17 3-19 44-63 (82)
No 1
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=19.43 E-value=80 Score=21.71 Aligned_cols=24 Identities=21% Similarity=0.606 Sum_probs=19.2
Q ss_pred heeccccceeeeeeeeeeeCCCCce
Q psy15675 83 TVKNISGRLMVGLRWWNYVDDQGKS 107 (202)
Q Consensus 83 ~vKNItGR~LVGLRWWnevde~G~s 107 (202)
+|.+--|+.+|.+|=|.+ +.||+.
T Consensus 12 tv~~fkG~~~VdIRe~Y~-~kdG~~ 35 (66)
T 1pcf_A 12 SVRDFKGKVLIDIREYWM-DPEGEM 35 (66)
T ss_dssp EEEEETTEEEEEEEEEEE-CTTSCE
T ss_pred EEEEeCCCEEEEEEEEEE-CCCCcC
Confidence 577889999999999886 457753
No 2
>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A
Probab=17.75 E-value=22 Score=27.60 Aligned_cols=11 Identities=36% Similarity=0.887 Sum_probs=8.9
Q ss_pred hhhhhheeccc
Q psy15675 78 SMDFWTVKNIS 88 (202)
Q Consensus 78 a~DFW~vKNIt 88 (202)
.+|||.|+|..
T Consensus 39 eiDFWlV~~Pa 49 (119)
T 3jsr_A 39 EIDFWLVPQPA 49 (119)
T ss_dssp CCCEEEEESBG
T ss_pred CccEEEecChh
Confidence 47999999874
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=13.37 E-value=1.1e+02 Score=18.11 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHhhhhhheec
Q psy15675 67 IASFVFIVLLLSMDFWTVKN 86 (202)
Q Consensus 67 v~~Fvi~ilLla~DFW~vKN 86 (202)
+...|..+..+++.||..|-
T Consensus 9 iaglvalltflafgfwlfky 28 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456666677888988763
No 4
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=11.60 E-value=68 Score=23.72 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=10.1
Q ss_pred hhhhhheeeeeCCCCccc
Q psy15675 167 NFANLYGYMKCKMGGNSD 184 (202)
Q Consensus 167 ~~~Nl~gy~kC~~~~k~~ 184 (202)
--.|+|||.|+.......
T Consensus 68 RQLN~YGF~Kv~~~~~g~ 85 (102)
T 3hts_B 68 RQLNMYGWHKVQDVKSGS 85 (102)
T ss_dssp HHHHHTTEEECC------
T ss_pred HHhhcCCceEeeccccCc
Confidence 446999999998554433
No 5
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=10.75 E-value=1.1e+02 Score=20.68 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=17.4
Q ss_pred ccCCCCCChHHHHHHHHHHHHH
Q psy15675 30 SRRGTLVHPYVTFFHLFFRSMA 51 (202)
Q Consensus 30 ~~~~~~~HP~~~~fhl~fK~~a 51 (202)
....+.+||-.|+=|++|+.++
T Consensus 14 ~~~~~~~lp~~~~knLiF~Lvs 35 (56)
T 2p63_A 14 FSAINNNLPHAYFKNLLFRLVA 35 (56)
T ss_dssp HHHHGGGSCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 3344678999999999999765
No 6
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=9.16 E-value=3.2e+02 Score=21.68 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=21.2
Q ss_pred eeeeeeCCCCceEEEEEeccCCCCCCCC
Q psy15675 96 RWWNYVDDQGKSHWVFESRKGDLQNRVN 123 (202)
Q Consensus 96 RWWnevde~G~s~W~FES~~~~~~~~~n 123 (202)
+.|.|.+.+|...|+|.-+..+++.+++
T Consensus 135 ~~w~e~g~~G~~v~kf~L~R~~gQp~l~ 162 (167)
T 3q0b_X 135 EYWEETGSHGKLVFKFKLRRIPGQPELP 162 (167)
T ss_dssp EEEEEECTTSCEEEEEEEEECTTSCCCC
T ss_pred eeEEeeCCCCcEEEEEEEEEcCCCCCCC
Confidence 5789999999999999877654544443
No 7
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=8.35 E-value=95 Score=17.60 Aligned_cols=7 Identities=57% Similarity=1.773 Sum_probs=5.4
Q ss_pred ccccccc
Q psy15675 3 YAPFWSK 9 (202)
Q Consensus 3 ~~~~~~~ 9 (202)
|.|||..
T Consensus 15 yepfwed 21 (26)
T 1nrp_R 15 YEPFWED 21 (26)
T ss_pred cCccccc
Confidence 7899964
No 8
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=7.50 E-value=1.1e+02 Score=17.50 Aligned_cols=7 Identities=57% Similarity=1.773 Sum_probs=5.2
Q ss_pred ccccccc
Q psy15675 3 YAPFWSK 9 (202)
Q Consensus 3 ~~~~~~~ 9 (202)
|.|||..
T Consensus 15 yepfwed 21 (27)
T 1nro_R 15 YEPFWED 21 (27)
T ss_pred cCccccc
Confidence 7888863
No 9
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=5.75 E-value=2.7e+02 Score=22.29 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=15.4
Q ss_pred eeeeCCCCceEEEEEeccC
Q psy15675 98 WNYVDDQGKSHWVFESRKG 116 (202)
Q Consensus 98 Wnevde~G~s~W~FES~~~ 116 (202)
=.|+|.+|+-.|.|+..++
T Consensus 246 ~~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 246 LVEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp EEEECTTSBEEEEECCTTT
T ss_pred EEEECCCCCEEEEecCccc
Confidence 3678999999999987653
No 10
>2kp6_A Uncharacterized protein; unknown function, structural genomics, PSI-2, protein struct initiative; NMR {Chromobacterium violaceum}
Probab=5.50 E-value=1.5e+02 Score=21.43 Aligned_cols=17 Identities=47% Similarity=0.907 Sum_probs=10.5
Q ss_pred ccccccc---ccccccccCC
Q psy15675 3 YAPFWSK---TFLENTLVDD 19 (202)
Q Consensus 3 ~~~~~~~---~~~~~~~~~~ 19 (202)
=||||++ .|+.-.+.+|
T Consensus 44 dApFWt~sQ~~FL~E~~~~D 63 (82)
T 2kp6_A 44 EAPFWTPAQAAFLRQALECD 63 (82)
T ss_dssp TCTTSCHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 3899985 4655555444
Done!