Query psy15675
Match_columns 202
No_of_seqs 110 out of 243
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 18:41:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15675.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15675hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pcfa_ d.18.1.1 (A:) Transcri 25.2 20 0.0015 23.1 2.4 23 83-106 12-34 (66)
2 d1bdya_ b.7.1.1 (A:) Domain fr 8.3 57 0.0041 22.1 1.1 23 78-100 101-123 (123)
3 d1nkta1 a.162.1.1 (A:226-349) 6.2 51 0.0037 23.2 -0.1 12 86-97 94-105 (124)
4 d1mcvi_ g.3.2.1 (I:) Trypsin i 5.9 61 0.0044 17.3 0.1 11 172-182 4-14 (28)
5 d1wosa1 b.44.2.1 (A:279-361) G 5.5 94 0.0069 19.4 0.9 8 90-97 1-8 (83)
6 d2f5va2 d.16.1.1 (A:355-552) P 5.1 2.3E+02 0.016 20.8 3.1 29 84-112 106-134 (198)
7 d1lgha_ f.3.1.1 (A:) Light-har 5.0 1.8E+02 0.013 17.4 2.0 14 137-150 19-32 (56)
8 d1tf5a1 a.162.1.1 (A:227-348) 4.6 73 0.0053 22.2 -0.1 11 87-97 93-103 (122)
9 d2d8xa1 g.39.1.3 (A:33-64) Pin 3.9 1.4E+02 0.01 16.5 0.7 12 80-92 11-22 (32)
10 d2h26a2 d.19.1.1 (A:7-183) CD1 3.8 4.7E+02 0.034 18.3 4.1 28 86-113 83-110 (177)
No 1
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.18 E-value=20 Score=23.11 Aligned_cols=23 Identities=22% Similarity=0.653 Sum_probs=19.0
Q ss_pred heeccccceeeeeeeeeeeCCCCc
Q psy15675 83 TVKNISGRLMVGLRWWNYVDDQGK 106 (202)
Q Consensus 83 ~vKNItGR~LVGLRWWnevde~G~ 106 (202)
+|++--|+.+|.+|=|.. |.||+
T Consensus 12 tV~~FkG~~~vdIReyY~-dkdGe 34 (66)
T d1pcfa_ 12 SVRDFKGKVLIDIREYWM-DPEGE 34 (66)
T ss_dssp EEEEETTEEEEEEEEEEE-CTTSC
T ss_pred EEEEECCcEEEEEEEEEE-CCCCC
Confidence 578889999999999884 56775
No 2
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.34 E-value=57 Score=22.11 Aligned_cols=23 Identities=9% Similarity=0.407 Sum_probs=18.7
Q ss_pred hhhhhheeccccceeeeeeeeee
Q psy15675 78 SMDFWTVKNISGRLMVGLRWWNY 100 (202)
Q Consensus 78 a~DFW~vKNItGR~LVGLRWWne 100 (202)
..|.|.-=..+||+++.+||+-|
T Consensus 101 ~~~~W~~L~~~Gkl~l~v~~f~e 123 (123)
T d1bdya_ 101 KAEFWLDLQPQAKVLMCVQYFLE 123 (123)
T ss_dssp EEEEEEECBSSCEEEEEEEEEEC
T ss_pred cccEEEeCCCCEEEEEEEEEecC
Confidence 45678766789999999999865
No 3
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.17 E-value=51 Score=23.16 Aligned_cols=12 Identities=33% Similarity=0.988 Sum_probs=10.9
Q ss_pred ccccceeeeeee
Q psy15675 86 NISGRLMVGLRW 97 (202)
Q Consensus 86 NItGR~LVGLRW 97 (202)
.-|||.|-|-||
T Consensus 94 e~TGR~~~grr~ 105 (124)
T d1nkta1 94 EFTGRVLIGRRY 105 (124)
T ss_dssp SSSCCBCTTCCC
T ss_pred ccCCCcccCCCc
Confidence 469999999999
No 4
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=5.92 E-value=61 Score=17.35 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=8.0
Q ss_pred heeeeeCCCCc
Q psy15675 172 YGYMKCKMGGN 182 (202)
Q Consensus 172 ~gy~kC~~~~k 182 (202)
.-|.||++|..
T Consensus 4 leym~c~~dsd 14 (28)
T d1mcvi_ 4 LEYMRCKQDSD 14 (28)
T ss_dssp CCCCBCSSGGG
T ss_pred chhhhcccccc
Confidence 35889988764
No 5
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=5.47 E-value=94 Score=19.38 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=6.4
Q ss_pred ceeeeeee
Q psy15675 90 RLMVGLRW 97 (202)
Q Consensus 90 R~LVGLRW 97 (202)
|+||||+-
T Consensus 1 RrlvGl~i 8 (83)
T d1wosa1 1 RKLVALEL 8 (83)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 68899875
No 6
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}
Probab=5.06 E-value=2.3e+02 Score=20.81 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=21.7
Q ss_pred eeccccceeeeeeeeeeeCCCCceEEEEE
Q psy15675 84 VKNISGRLMVGLRWWNYVDDQGKSHWVFE 112 (202)
Q Consensus 84 vKNItGR~LVGLRWWnevde~G~s~W~FE 112 (202)
-|+..||..|+|||.-|+-.+-++.=.+.
T Consensus 106 lk~~~~~~~v~l~~~ge~~P~~~Nrv~l~ 134 (198)
T d2f5va2 106 QQSIDSRLIVDWRFFGRTEPKEENKLWFS 134 (198)
T ss_dssp CCSSCGGGEEEEEEEECCCCCTTCEEEEE
T ss_pred ccccccCcEEEEEEEecccCCCCCEEEeC
Confidence 46888999999999999875544454443
No 7
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=4.98 E-value=1.8e+02 Score=17.42 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHh
Q psy15675 137 CPVMWALFLLTALF 150 (202)
Q Consensus 137 ~p~~W~i~~i~~l~ 150 (202)
.|++|++..+.++.
T Consensus 19 lpviwivatvvaia 32 (56)
T d1lgha_ 19 LPVIWIVATVVAIA 32 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 58889888887764
No 8
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=4.64 E-value=73 Score=22.16 Aligned_cols=11 Identities=55% Similarity=1.017 Sum_probs=10.2
Q ss_pred cccceeeeeee
Q psy15675 87 ISGRLMVGLRW 97 (202)
Q Consensus 87 ItGR~LVGLRW 97 (202)
-|||.|-|=||
T Consensus 93 ~TGR~~~gr~~ 103 (122)
T d1tf5a1 93 FTGRLMKGRRY 103 (122)
T ss_dssp TTCCBCTTCCC
T ss_pred cCCCCccCccc
Confidence 59999999999
No 9
>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.93 E-value=1.4e+02 Score=16.51 Aligned_cols=12 Identities=50% Similarity=0.592 Sum_probs=7.1
Q ss_pred hhhheecccccee
Q psy15675 80 DFWTVKNISGRLM 92 (202)
Q Consensus 80 DFW~vKNItGR~L 92 (202)
|-=.|||. ||.|
T Consensus 11 D~GFvKna-gR~L 22 (32)
T d2d8xa1 11 DIGFVKNA-GRHL 22 (32)
T ss_dssp SSCCEEET-TEEE
T ss_pred Hhhhhhcc-cccc
Confidence 44457775 6655
No 10
>d2h26a2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains {Human (Homo sapiens), CD1a [TaxId: 9606]}
Probab=3.81 E-value=4.7e+02 Score=18.33 Aligned_cols=28 Identities=4% Similarity=-0.172 Sum_probs=23.4
Q ss_pred ccccceeeeeeeeeeeCCCCceEEEEEe
Q psy15675 86 NISGRLMVGLRWWNYVDDQGKSHWVFES 113 (202)
Q Consensus 86 NItGR~LVGLRWWnevde~G~s~W~FES 113 (202)
|-+|-.-+..+.-.|+++||.++..++-
T Consensus 83 ~~~g~htlQ~~~GCEl~~dg~~~gf~q~ 110 (177)
T d2h26a2 83 QMKYPFEIQGIAGCELHSGGAIVSFLRG 110 (177)
T ss_dssp TCCSSEEEEEEEEEEECTTSCEEEEEEE
T ss_pred CCCCceEEEEEEEEEECCCCceeeEEEE
Confidence 6789999999999999999988765543
Done!