RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15675
(202 letters)
>gnl|CDD|218768 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846).
This family consists of several of unknown function
from a variety of eukaryotic organisms.
Length = 141
Score = 168 bits (427), Expect = 7e-54
Identities = 75/142 (52%), Positives = 96/142 (67%), Gaps = 3/142 (2%)
Query: 36 VHPYVTFFHLFFRSMAILSYMFTGLFSSSGFIASFVFIVLLLSMDFWTVKNISGRLMVGL 95
HP FFHL F+ +AIL Y+ GLFS + FI F+ I+LLLS+DFW KNI+GRL+VGL
Sbjct: 3 SHPVACFFHLLFKLLAILLYLLGGLFSDN-FILQFIIIILLLSLDFWLTKNITGRLLVGL 61
Query: 96 RWWNYVDDQGKSHWVFESRKGDLQNRVNGTEARIFWTSLIVCPVMWALFLLTALFGFNFK 155
RWWN VD+ G+S WVFESR N ++ +FW +L V P+ W + + L F FK
Sbjct: 62 RWWNEVDEDGESKWVFESR--PPPFVPNAIDSNLFWLALYVSPLFWVVLAIINLISFKFK 119
Query: 156 WMLLVWIALTLNFANLYGYMKC 177
W+LLV+IAL LN NLYG+ KC
Sbjct: 120 WLLLVFIALFLNGTNLYGFYKC 141
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 29.4 bits (66), Expect = 1.4
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 50 MAILSYMFTGLFSSSGFIASFVFIVLLLSMDFWTVKNISGRLMVGLRWWNYVDDQGKSHW 109
+ ++Y G+ + G F + V+L F + + R+ RW N ++D W
Sbjct: 823 LISMAYGQIGMIQALG--GFFTYFVILAENGFLPLHLVGLRVQWDDRWINDLEDSYGQEW 880
Query: 110 VFESRKGDLQNRVNGTEARIFWTSLIVCPVMWA 142
+E RK V T F+ S++V WA
Sbjct: 881 TYEQRK-----YVEFTCHTAFFVSIVVV--QWA 906
>gnl|CDD|226376 COG3858, COG3858, Predicted glycosyl hydrolase [General function
prediction only].
Length = 423
Score = 28.6 bits (64), Expect = 2.2
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 15/64 (23%)
Query: 86 NISGRLMVGLRWWNYVDDQGKSHWVFES------RKGDLQNRVN---------GTEARIF 130
I ++ YVD +G+ H V+ K DL G E
Sbjct: 355 TIQYDATSQSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPRN 414
Query: 131 WTSL 134
WT L
Sbjct: 415 WTYL 418
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
(EST) Family.
Length = 1145
Score = 28.7 bits (64), Expect = 2.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 131 WTSLIVCPVMWALFLLTALFGFNFKWMLLVWIALTLNFANLYGYM 175
W L + V+ FL+ AL N L+ + L L L+G M
Sbjct: 966 WLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMTVELFGMM 1010
>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 28.4 bits (64), Expect = 2.8
Identities = 6/52 (11%), Positives = 13/52 (25%)
Query: 42 FFHLFFRSMAILSYMFTGLFSSSGFIASFVFIVLLLSMDFWTVKNISGRLMV 93
F + + + + S V + LL + R +
Sbjct: 57 LFIILKAVLTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGASRLLFRALR 108
>gnl|CDD|119353 cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme
(CFLE) is a peptidoglycan hydrolase involved in
bacterial endospore germination. CFLE is expressed as
an inactive preprotein (called SleB) in the forespore
compartment of sporulating cells. SleB translocates
across the forespore inner membrane and is deposited as
a mature enzyme in the cortex layer of the spore. As
part of a sensory mechanism capable of initiating
germination, CFLE degrades a spore-specific
peptidoglycan constituent called muramic-acid
delta-lactam that comprises the outer cortex. CFLE has
a C-terminal glycosyl hydrolase family 18 (GH18)
catalytic domain as well as two N-terminal LysM
peptidoglycan-binding domains. In addition to SleB,
this family includes YaaH, YdhD, and YvbX from Bacillus
subtilis.
Length = 313
Score = 28.0 bits (63), Expect = 3.4
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 97 WWNYVDDQGKSHWVF 111
++ YVD+QG+ H V+
Sbjct: 261 FFRYVDEQGRRHEVW 275
>gnl|CDD|215375 PLN02697, PLN02697, lycopene epsilon cyclase.
Length = 529
Score = 27.9 bits (62), Expect = 3.8
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 41 TFFHLFFRSMAILSYMFTGLFSSSGFIASFVFIVLLLS---MDFWTVKNI----SGRLMV 93
TFF FFR + F G SS + F + +++ + V+++ +G M+
Sbjct: 464 TFFVTFFRLPKWMWQGFLGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMI 523
>gnl|CDD|225296 COG2452, COG2452, Predicted site-specific integrase-resolvase [DNA
replication, recombination, and repair].
Length = 193
Score = 27.4 bits (61), Expect = 4.6
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 114 RKGDLQNRVNGTEARIFWTSLIVCPVMWAL 143
+K DL+ ++N + ++ + L
Sbjct: 67 QKEDLERQINYLTNYGYKVDEVLTDIGSGL 96
>gnl|CDD|235615 PRK05812, secD, preprotein translocase subunit SecD; Reviewed.
Length = 462
Score = 27.5 bits (62), Expect = 6.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 52 ILSYMFTGLFSSSGFIASFVFIVLLLSM 79
IL Y GL ++ +A+ V I+ +LS+
Sbjct: 315 ILYYRLFGLIANIALVANLVLILAVLSL 342
>gnl|CDD|238591 cd01186, INT_SG3_C, INT_SG3, DNA breaking-rejoining enzymes,
integrase/recombinases subgroup 3, catalytic domain. The
CD contains various predicted bacterial and phage
integrase/recombinase sequences for which not much
experimental characterization is available.
Length = 180
Score = 26.4 bits (59), Expect = 8.0
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 100 YVDDQGKSHWVFESRKGD 117
Y+ D ++ ++F+SRKG
Sbjct: 83 YIKDLEENEYLFQSRKGG 100
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 26.8 bits (60), Expect = 9.1
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 43 FHLFFRSMAILSYMFTGLFSSSGFIA-----SFVFIVL 75
F FR +L YM FS +G + FV+I L
Sbjct: 187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL 224
>gnl|CDD|224776 COG1863, MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit
[Inorganic ion transport and metabolism].
Length = 158
Score = 26.1 bits (58), Expect = 9.4
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 42 FFHLFFRSMAILSYMFTGLFSSSGFIASFVF--IVLLLSMDFWTVKNISGRL 91
F L +A+ + TG FS + I F+ IVLLL F + RL
Sbjct: 3 PFLLLNILLALFWLLLTGSFSPANLILGFIVGAIVLLLLRRFLPARLYPRRL 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.140 0.460
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,414,668
Number of extensions: 980449
Number of successful extensions: 1985
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1961
Number of HSP's successfully gapped: 140
Length of query: 202
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 110
Effective length of database: 6,857,034
Effective search space: 754273740
Effective search space used: 754273740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.2 bits)