RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15675
         (202 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 4.0
 Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 20/114 (17%)

Query: 39  YVTFF---HLFFRSMAILSYMFTGLFSSSGFIASFVFIVLLLSMDFWTVKNISGRLMVGL 95
           Y       HL          +F  +F    F+       +      W         +  L
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILNTLQQL 527

Query: 96  RWW-NYVDDQGKSHWVFESRKGDLQNRVNGTEARIFWTSLIVCP----VMWALF 144
           +++  Y+ D   +   +E     + + +   E      +LI       +  AL 
Sbjct: 528 KFYKPYICD---NDPKYERLVNAILDFLPKIE-----ENLICSKYTDLLRIALM 573



 Score = 26.4 bits (57), Expect = 8.6
 Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)

Query: 105 GKSHWVFES-RKGDLQNRVNGTEARIFWTSLIVC 137
           GK+    +      +Q +++    +IFW +L  C
Sbjct: 162 GKTWVALDVCLSYKVQCKMDF---KIFWLNLKNC 192


>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
           receptor, metal transport; HET: P8P; 2.45A {Gallus
           gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
          Length = 343

 Score = 26.3 bits (57), Expect = 9.2
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 130 FWTSLIVCPVMWALFLLTALFGFNFKWMLLVWIALTLNFANLYGYMKCKMGGNSDKSLMS 189
            +T+ +     + L L +  F  ++    L++  + L   +L        G ++ K  + 
Sbjct: 35  MFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLEN----PGGDDTFKPCVL 90

Query: 190 TVSSMSSGLFFS 201
            V+   +   FS
Sbjct: 91  QVNGFVAAFLFS 102


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.140    0.460 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,091,624
Number of extensions: 168585
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 12
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.5 bits)