BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15676
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WUA2|PPIL4_HUMAN Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4
PE=1 SV=1
Length = 492
Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/264 (47%), Positives = 169/264 (64%), Gaps = 15/264 (5%)
Query: 15 VVLYGSETWTMRKKE----EKYLESFEMWLWRRMEKIKWSDK----IRNEEVLRRGFSFL 66
++ G T T R E + Y + + ++ +IK K + N + G FL
Sbjct: 50 IIQTGDPTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFL 109
Query: 67 ----EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIV--FKRKNDIRITHAVILEDPYEDL 120
E+ + + G+ V + +K + + F DIRI H VIL+DP++D
Sbjct: 110 ITTGENLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVILDDPFDDP 169
Query: 121 PELVYPP-SPEPTRELLANGLIGADEDIDETAGLSAQEIEELRAEREAKARATILEIVGD 179
P+L+ P SPEPTRE L +G IGADE+ID+ G SA+E+EE++AE+EAK +A +LE+VGD
Sbjct: 170 PDLLIPDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGD 229
Query: 180 LPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFD 239
LP+AD PPENVLFVCKLNPVT+D+DLEIIFSRFG + CEVIRD TG+SL YAF+EF+
Sbjct: 230 LPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFE 289
Query: 240 NPKSCEDAYLKMDNVLIDDRRIHA 263
+ CE A+ KMDNVLIDDRRIH
Sbjct: 290 KEEDCEKAFFKMDNVLIDDRRIHV 313
>sp|Q9CXG3|PPIL4_MOUSE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4
PE=2 SV=2
Length = 492
Score = 204 bits (519), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 126/264 (47%), Positives = 169/264 (64%), Gaps = 15/264 (5%)
Query: 15 VVLYGSETWTMRKKE----EKYLESFEMWLWRRMEKIKWSDK----IRNEEVLRRGFSFL 66
++ G T T R E + Y + + ++ +IK K + N + G FL
Sbjct: 50 IIQTGDPTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFL 109
Query: 67 ----EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIV--FKRKNDIRITHAVILEDPYEDL 120
E+ + + G+ V + VK + + F DIRI H VIL+DP++D
Sbjct: 110 ITTGENLDYLDGVHTVFGEVTEGMDIVKKINETFVDKDFVPYQDIRINHTVILDDPFDDP 169
Query: 121 PELVYPP-SPEPTRELLANGLIGADEDIDETAGLSAQEIEELRAEREAKARATILEIVGD 179
P+L+ P SPEPT+E L +G IGADE+ID+ G SA+E+EE++AE+EAK +A +LE+VGD
Sbjct: 170 PDLLIPDRSPEPTKEQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGD 229
Query: 180 LPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFD 239
LP+AD PPENVLFVCKLNPVT+D+DLEIIFSRFG + CEVIRD TG+SL YAF+EF+
Sbjct: 230 LPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFE 289
Query: 240 NPKSCEDAYLKMDNVLIDDRRIHA 263
+ CE A+ KMDNVLIDDRRIH
Sbjct: 290 KEEDCEKAFFKMDNVLIDDRRIHV 313
>sp|Q4WAQ9|PPIL4_ASPFU Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cyp6 PE=3 SV=1
Length = 459
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 121/160 (75%), Gaps = 3/160 (1%)
Query: 104 DIRITHAVILEDPYEDLPELVYPP-SPEPTRELLANGLIGADEDIDETAGLSAQEIEELR 162
DIRI H VIL+DPY+D P LV P SP P++ LA I DE++D+ + + +E+LR
Sbjct: 163 DIRIRHTVILDDPYDDPPGLVVPAESPLPSKAQLATVRIADDEELDDN--MDEEAMEKLR 220
Query: 163 AEREAKARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI 222
EREA+A+A LE+VGDLP A+ PPENVLFVCKLNPVT D+DL++IFSRFG + CEVI
Sbjct: 221 REREARAQALTLEMVGDLPFAEVKPPENVLFVCKLNPVTQDEDLQLIFSRFGPILSCEVI 280
Query: 223 RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
RDK TGDSLQYAF+EF+N K CE AY KM VLIDD RIH
Sbjct: 281 RDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIH 320
>sp|Q2U256|PPIL4_ASPOR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1
Length = 461
Score = 197 bits (502), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 99/160 (61%), Positives = 120/160 (75%), Gaps = 3/160 (1%)
Query: 104 DIRITHAVILEDPYEDLPELVYPP-SPEPTRELLANGLIGADEDIDETAGLSAQEIEELR 162
DIRI H VIL+DP++D P LV P SP P++ LA I DE++D+ + + +E+LR
Sbjct: 163 DIRIRHTVILDDPFDDPPGLVAPAESPLPSKAQLATVRIADDEELDDN--MDEESMEKLR 220
Query: 163 AEREAKARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI 222
EREA+A+A LE+VGDLP A+ PPENVLFVCKLNPVT D+DL +IFSRFG + CEVI
Sbjct: 221 REREARAQALTLEMVGDLPFAEVKPPENVLFVCKLNPVTQDEDLHLIFSRFGTILSCEVI 280
Query: 223 RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
RDK TGDSLQYAF+EF+N K CE AY KM VLIDD RIH
Sbjct: 281 RDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIH 320
>sp|Q5ARI5|PPIL4_EMENI Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cyp6 PE=3 SV=1
Length = 461
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/160 (63%), Positives = 122/160 (76%), Gaps = 3/160 (1%)
Query: 104 DIRITHAVILEDPYEDLPELVYPP-SPEPTRELLANGLIGADEDIDETAGLSAQEIEELR 162
DIRI H VIL+DP++D P LV PP SP PT+ LA I DED+ + ++ +E+LR
Sbjct: 163 DIRIRHTVILDDPFDDPPGLVEPPESPLPTKAQLATVRIADDEDLGDDMDEAS--MEKLR 220
Query: 163 AEREAKARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI 222
EREA+A+A LE+VGDLP A+ PPENVLFVCKLNPVT D+DLE+IFSRFGK+ CEVI
Sbjct: 221 REREARAQALTLEMVGDLPFAEVKPPENVLFVCKLNPVTQDEDLELIFSRFGKILSCEVI 280
Query: 223 RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
RDK TGDSLQYAF+EF++ K CE AY KM VLIDD RIH
Sbjct: 281 RDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHRIH 320
>sp|P0C1I6|PPIL4_RHIO9 Peptidyl-prolyl cis-trans isomerase-like 4 OS=Rhizopus delemar
(strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL
43880) GN=cyp13 PE=3 SV=1
Length = 446
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/161 (59%), Positives = 119/161 (73%), Gaps = 3/161 (1%)
Query: 104 DIRITHAVILEDPYEDLPELVYPP-SPEPTRELLANGLIGADEDIDETAGLSAQEIEELR 162
DIRI H V+L+DP+ D LV P SP PT+E L + IG DED++E +E+E+
Sbjct: 157 DIRIKHTVVLDDPFPDPDGLVIPDESPLPTKEQLESMRIGEDEDLEEMG--DPEELEKRV 214
Query: 163 AEREAKARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI 222
REAKA A LE++GDLP A+ PPENVLFVCKLNPVT D+DLE+IFSRFG ++ CE+I
Sbjct: 215 RAREAKAHALTLEMIGDLPFAEVKPPENVLFVCKLNPVTRDEDLEMIFSRFGLIHSCEII 274
Query: 223 RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263
RD+ TGDSL YAFVEF+N + E+AY KM +VLIDDRRIH
Sbjct: 275 RDRQTGDSLSYAFVEFENKEDAEEAYFKMQSVLIDDRRIHV 315
>sp|Q9UUE4|PPIL4_SCHPO Peptidyl-prolyl cis-trans isomerase cyp6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cyp6 PE=1 SV=1
Length = 432
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/161 (59%), Positives = 114/161 (70%), Gaps = 4/161 (2%)
Query: 104 DIRITHAVILEDPYEDLPELVYP-PSPEPTRELLANGLIGADEDIDETAGLSAQEIEELR 162
DIRI H +IL+DP+ED P+LV P SP PT E LA IG +E I+ S +++ +
Sbjct: 160 DIRIKHTIILDDPFEDPPDLVEPLRSPSPTPEQLATVRIGENEQIESET--SEDKLQREK 217
Query: 163 AEREAKARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI 222
T LE++GDLP A APPENVLFVCKLNPVT D+DLE+IFSRFGK+ C+VI
Sbjct: 218 EMEAEAEAVT-LEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVI 276
Query: 223 RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263
RDK TGDSLQYAF+EFDN +S E AY KM NVLIDD RIH
Sbjct: 277 RDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
>sp|Q4IE79|PPIL4_GIBZE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=CYP6 PE=3 SV=2
Length = 485
Score = 175 bits (444), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 114/160 (71%), Gaps = 1/160 (0%)
Query: 104 DIRITHAVILEDPYEDLPELVYPP-SPEPTRELLANGLIGADEDIDETAGLSAQEIEELR 162
DIRI H VIL+DPY D P L P SP PT + L I + + E + +E+E R
Sbjct: 164 DIRIKHTVILDDPYADPPGLREPSTSPPPTDQQLKTVRIADEAALHEDDNVDEEELERRR 223
Query: 163 AEREAKARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI 222
REA+A+A LE++GDLP A+ PPENVLFVCKLNPVT D+DLE+IF RFGK+ CEVI
Sbjct: 224 RNREAQAQALTLEMMGDLPFAEVKPPENVLFVCKLNPVTGDEDLELIFGRFGKILSCEVI 283
Query: 223 RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
RD+ TGDSLQYAF+E+++ SCE AY KM VLIDDRRIH
Sbjct: 284 RDQKTGDSLQYAFIEYEDKASCEAAYFKMQGVLIDDRRIH 323
>sp|P0C196|PPIL4_USTMA Peptidyl-prolyl cis-trans isomerase-like 4 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=CYP6 PE=3 SV=1
Length = 551
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 106/159 (66%), Gaps = 3/159 (1%)
Query: 104 DIRITHAVILEDPYEDLPELVYPP-SPEPTRELLANGLIGADEDIDETAGLSAQEIEELR 162
DIRI H V+LEDP+ D P SP PT + + DED+ +++E E+R
Sbjct: 177 DIRIRHVVVLEDPFADPDGFCAPSRSPSPTPCQVRALRLADDEDVHSDVDPASKE--EMR 234
Query: 163 AEREAKARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI 222
+ A A LE+VGDLP A+ PPEN+LFVCKLNPVT DDLE+IFSRFGK+ CEVI
Sbjct: 235 RNADTNAAALTLEMVGDLPFAEIRPPENILFVCKLNPVTRSDDLELIFSRFGKILSCEVI 294
Query: 223 RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+DK TGDSLQYAF+EFD E AY KM NVL+DDRRI
Sbjct: 295 KDKKTGDSLQYAFIEFDKKDDAERAYFKMQNVLVDDRRI 333
>sp|Q871A4|PPIL4_NEUCR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cyp-6 PE=3 SV=1
Length = 494
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/163 (57%), Positives = 116/163 (71%), Gaps = 3/163 (1%)
Query: 104 DIRITHAVILEDPYEDLPELVYP-PSPEPTRELLANGLIGADEDIDETAGLSAQEIEELR 162
DIRI H VIL+DPY D + P SP P++ LA I E++ + E R
Sbjct: 164 DIRIKHTVILDDPYPDPAGMREPSASPPPSKAQLATVRITEGEELLDVEASEEAAAEAER 223
Query: 163 AEREAKA--RATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCE 220
RE +A +A LE++GDLP A+ PPENVLFVCKLNPVT+D+DLE+IFSRFGK+ CE
Sbjct: 224 RRREREAAAQALTLEMMGDLPFAEVKPPENVLFVCKLNPVTTDEDLELIFSRFGKILSCE 283
Query: 221 VIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263
VIRD+ TGDSLQYAF+EF++ KSCE+AY KMD+VLIDDRRIH
Sbjct: 284 VIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRRIHV 326
>sp|P0CP88|PPIL4_CRYNJ Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=CYP6 PE=3 SV=1
Length = 504
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 108/160 (67%), Gaps = 5/160 (3%)
Query: 104 DIRITHAVILEDPYEDLPELVYPPSPEPTREL--LANGLIGADEDIDETAGLSAQEIEEL 161
+IRI H ILEDP+ D P+ P P R L+ I ED A + +E EEL
Sbjct: 161 NIRIRHVEILEDPFPD-PDNFMPIPQSPIRPPDDLSKVRIADTED--PNAVIPEEEAEEL 217
Query: 162 RAEREAKARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEV 221
R EA + A LE++GDLP A PPEN+LFVCKLNPVT D+DLE+IFSRFGK+ CEV
Sbjct: 218 RRRTEAASSALTLEMIGDLPFAAVRPPENILFVCKLNPVTQDEDLELIFSRFGKILSCEV 277
Query: 222 IRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+RDK +GDSLQYAF+EFD ++ E AY KM NVL+DDRRI
Sbjct: 278 VRDKKSGDSLQYAFIEFDEREAAEQAYFKMQNVLVDDRRI 317
>sp|P0CP89|PPIL4_CRYNB Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=CYP6 PE=3 SV=1
Length = 504
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 108/160 (67%), Gaps = 5/160 (3%)
Query: 104 DIRITHAVILEDPYEDLPELVYPPSPEPTREL--LANGLIGADEDIDETAGLSAQEIEEL 161
+IRI H ILEDP+ D P+ P P R L+ I ED A + +E EEL
Sbjct: 161 NIRIRHVEILEDPFPD-PDNFMPIPQSPIRPPDDLSKVRIADTED--PNAVIPEEEAEEL 217
Query: 162 RAEREAKARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEV 221
R EA + A LE++GDLP A PPEN+LFVCKLNPVT D+DLE+IFSRFGK+ CEV
Sbjct: 218 RRRTEAASSALTLEMIGDLPFAAVRPPENILFVCKLNPVTQDEDLELIFSRFGKILSCEV 277
Query: 222 IRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+RDK +GDSLQYAF+EFD ++ E AY KM NVL+DDRRI
Sbjct: 278 VRDKKSGDSLQYAFIEFDEREAAEQAYFKMQNVLVDDRRI 317
>sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio
rerio GN=snrnp35 PE=2 SV=1
Length = 208
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P+ LFV +LNP T+++ L +FS+FG + ++RD VTG S +YAF+E+ +S + A
Sbjct: 48 PDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRA 107
Query: 248 YLKMDNVLID 257
+ + +++D
Sbjct: 108 WRDANKLILD 117
>sp|Q1LZH0|U1SBP_BOVIN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos
taurus GN=SNRNP35 PE=2 SV=1
Length = 245
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T ++ L+ +FSR+G + ++RD VTG S YAF+E+ + +S A
Sbjct: 49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=usp101 PE=1 SV=1
Length = 261
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 175 EIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYA 234
++GD P +F+ +L+ T + D+E F+R+G + V+R+KVTG S+ YA
Sbjct: 93 HVIGD--------PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYA 144
Query: 235 FVEFDNPKSCEDAYLKMDNVLIDDRRI 261
FV F+ + + AY ++++ RRI
Sbjct: 145 FVVFERERDLKVAYKASAGLMLNGRRI 171
>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
laevis GN=snrnp35 PE=2 SV=1
Length = 272
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +L+P T+++ L+ +FSR+G + ++RD +TG S YAF+E+ + A
Sbjct: 49 PHLTLFVSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKA 108
Query: 248 YLKMDNVLIDDRRI 261
+ + ++ID R +
Sbjct: 109 HRDANKLVIDQREV 122
>sp|Q16560|U1SBP_HUMAN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo
sapiens GN=SNRNP35 PE=1 SV=1
Length = 246
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T +D L+ +FSR+G + ++RD VTG S YAF+E+ ++ A
Sbjct: 49 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>sp|Q5U1W5|U1SBP_RAT U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus
norvegicus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T ++ L+ +FSR+G + ++RD VTG S YAF+E+ ++ A
Sbjct: 49 PLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus
musculus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T ++ L+ +FSR+G + ++RD VTG S YAF+E+ ++ A
Sbjct: 49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LF+ LN T+++ LE +FS++G+++ V++D+ T S + FV F+NP +DA
Sbjct: 4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAM 63
Query: 249 LKMDNVLIDDRRI 261
+ M+ +D R+I
Sbjct: 64 MAMNGKAVDGRQI 76
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV LN T+++ LE +FS++G+V V++D+ + S + FV F+NP+ +DA
Sbjct: 5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAM 64
Query: 249 LKMDNVLIDDRRI 261
+ M+ +D R+I
Sbjct: 65 MAMNGKSVDGRQI 77
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
N ++V ++P SDDD++ +F FGK+ C + R+ TG + F+E++ P+S DA
Sbjct: 183 NRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVS 242
Query: 250 KMD 252
M+
Sbjct: 243 SMN 245
Score = 38.1 bits (87), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+D + F+ FG + ++ D VT +AFVE++ P++ + A +M++V++ R I
Sbjct: 98 GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 157
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK- 250
+F+ LN T+DD L F +FG+V C V+RD TG S + F+ F NPK + K
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 251 --MDNVLIDDRRIHARGEE 267
+D +ID +R R E+
Sbjct: 225 HHLDGKIIDPKRAIPREEQ 243
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +S +DA
Sbjct: 226 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 285
Query: 250 KMD 252
M+
Sbjct: 286 SMN 288
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+D + F+ FG + ++ D VT +AFVE++ P++ + A +M++V++ R I
Sbjct: 141 GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 200
Query: 262 HARGEEWNMWKRREEEEEKEEIDEKKEEEEKEDRAMIGDRMED 304
G N+ + + ID+ EE +R + +D
Sbjct: 201 KV-GRPSNIG------QAQPIIDQLAEEARAFNRIYVASVHQD 236
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +S +DA
Sbjct: 231 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 290
Query: 250 KMD 252
M+
Sbjct: 291 SMN 293
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+D + F+ FG + ++ D VT +AFVE++ P++ + A +M++V++ R I
Sbjct: 146 GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 205
Query: 262 HARGEEWNMWKRREEEEEKEEIDEKKEEEEKEDRAMIGDRMED 304
G N+ + + ID+ EE +R + +D
Sbjct: 206 KV-GRPSNIG------QAQPIIDQLAEEARAFNRIYVASVHQD 241
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +S +DA
Sbjct: 231 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 290
Query: 250 KMD 252
M+
Sbjct: 291 SMN 293
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+D + F+ FG + ++ D VT +AFVE++ P++ + A +M++V++ R I
Sbjct: 146 GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 205
Query: 262 HARGEEWNMWKRREEEEEKEEIDEKKEEEEKEDRAMIGDRMED 304
G N+ + + ID+ EE +R + +D
Sbjct: 206 KV-GRPSNIG------QAQPIIDQLAEEARAFNRIYVASVHQD 241
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +S +DA
Sbjct: 225 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 284
Query: 250 KMD 252
M+
Sbjct: 285 SMN 287
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+D + F+ FG + ++ D VT +AFVE++ P++ + A +M++V++ R I
Sbjct: 140 GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 199
Query: 262 HARGEEWNMWKRREEEEEKEEIDEKKEEEEKEDRAMIGDRMED 304
G N+ + + ID+ EE +R + +D
Sbjct: 200 KV-GRPSNIG------QAQPIIDQLAEEARAFNRIYVASVHQD 235
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +S +DA
Sbjct: 197 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 256
Query: 250 KMD 252
M+
Sbjct: 257 SMN 259
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+D + F+ FG + ++ D VT +AFVE++ P++ + A +M++V++ R I
Sbjct: 112 GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 171
Query: 262 HARGEEWNMWKRREEEEEKEEIDEKKEEEEKEDRAMIGDRMED 304
G N+ + + ID+ EE +R + +D
Sbjct: 172 KV-GRPSNIG------QAQPIIDQLAEEARAFNRIYVASVHQD 207
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A P NVL V L P T + DL+ FSRFGK++ ++I D+ TG S + FV F+N +
Sbjct: 106 ANTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKE 165
Query: 243 S-------CEDAYLKMDNVLID 257
C+D L ++ D
Sbjct: 166 DAVRAKEECQDLQLHGKSIRTD 187
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ LN TS+ LE FS+FG+++ +++D+ T S +AFV ++NP +DA +M
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 252 DNVLIDDRRI 261
+ +D + I
Sbjct: 70 NGKPLDGKPI 79
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 252 DNVLIDDRRIHARGEEWNMWKRREEEEEKEEIDEKKEEEEKED 294
+ R+I W R+ K + ++ ED
Sbjct: 159 GGQWLGGRQIRTN------WATRKPPAPKSTQENNTKQLRFED 195
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 252 DNVLIDDRRIHARGEEWNMWKRREEEEEKEEIDEKKEEEEKED 294
+ R+I W R+ K + ++ ED
Sbjct: 176 GGQWLGGRQIRTN------WATRKPPAPKSTQETNTKQLRFED 212
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+F+ LN T L+ IF RFG V ++RD+ T S +AF+ F P ++A +M
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEM 69
Query: 252 DNVLIDDRRI 261
+ V++D +RI
Sbjct: 70 NGVILDGKRI 79
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LFV L +T+ + L FS +G+++ C + + TG+ L AF++F N + AY +
Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKAL 282
Query: 252 DNVLIDDRRIH 262
D + R +H
Sbjct: 283 DKTIFQGRLLH 293
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LFV L +T+ + L FS +G+++ C + + TG+ L AF++F N + AY +
Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKAL 282
Query: 252 DNVLIDDRRIH 262
D + R +H
Sbjct: 283 DKTIFQGRLLH 293
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FG+++ V++D TG S Y FV F N E+A +M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 252 DNVLIDDRRIHARGEEWNMWKRREEEEEKEEIDEKKEE 289
+ R+I W R+ K + ++
Sbjct: 168 GGQWLGGRQIRTN------WATRKPPAPKSTYESNTKQ 199
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FG+++ V++D TG S Y FV F N E+A +M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 252 DNVLIDDRRIHARGEEWNMWKRREEEEEKEEIDEKKEE 289
+ R+I W R+ K + ++
Sbjct: 168 GGQWLGGRQIRTN------WATRKPPAPKSTYESNTKQ 199
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E FV L T+D+ LE FS+FG + ++I D+ TG S + FV F + KS
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA M+ +D R I
Sbjct: 62 DAIEGMNGQELDGRNI 77
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
E LF+ LN T++D LE F+++G+++ V++D+ T S + FV F+N +D
Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61
Query: 247 AYLKMDNVLIDDRRI 261
A + M+ +D R+I
Sbjct: 62 AMMAMNGKSVDGRQI 76
>sp|Q55FQ0|RU17_DICDI U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium
discoideum GN=snrnp70 PE=3 SV=1
Length = 459
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRD-----KVTGDSLQYAFVEFDNPK 242
P +FV +++ T+ LE F +FG + +++D K TG YAF+EF+ +
Sbjct: 97 PYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTG----YAFIEFERER 152
Query: 243 SCEDAYLKMDNVLIDDRRIHA---RGEEWNMWKRRE 275
+ AY + D + IDDRRI RG WK R+
Sbjct: 153 DMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRK 188
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDR 259
+ EDA MD ++D R
Sbjct: 66 RDAEDAMDAMDGAVLDGR 83
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV LN T + LE FS FG ++ V++D+ T S + F+ F NP+ DA
Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAM 64
Query: 249 LKMDNVLIDDRRI 261
M+ +D R+I
Sbjct: 65 RAMNGESLDGRQI 77
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+F+ L+P + L FS FGK+ C+V D++ G++ Y FV FD+ +S A +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHV 228
Query: 252 DNVLIDDRRIHARGEEWNMWKRREEEEEKEEI 283
+ +L++D++++ + RRE + + E +
Sbjct: 229 NGMLLNDKKVYV----GHHVSRRERQSKVEAL 256
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
+ AP L+V +L+P ++ L +F+ G V V RD VT SL YA+V F N +
Sbjct: 73 SGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNME 132
Query: 243 SCEDAYLKMDNVLIDDR--RIHARGEEWNMWKRRE 275
E A +++ LI R RI MW +R+
Sbjct: 133 DGEKALDELNYTLIKGRPCRI--------MWSQRD 159
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ L D+ L+ FS FG + +++ D+ G S + FV + P+ A +M
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 252 DNVLIDDRRIH 262
+ ++ + ++
Sbjct: 425 NQRMLAGKPLY 435
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRI 261
+ EDA MD ++D R +
Sbjct: 66 RDAEDAMDAMDGAVLDGREL 85
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 193 FVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD 252
FV L T D +LE FS+FG+V ++I D+ TG S + FV F + KS +DA +M+
Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
Query: 253 NVLIDDRRI 261
+D R I
Sbjct: 69 GKELDGRTI 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,205,455
Number of Sequences: 539616
Number of extensions: 5933784
Number of successful extensions: 69465
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 331
Number of HSP's that attempted gapping in prelim test: 58750
Number of HSP's gapped (non-prelim): 7528
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)