Query psy15676
Match_columns 309
No_of_seqs 401 out of 2098
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:42:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0415|consensus 100.0 3.1E-39 6.7E-44 293.7 13.7 170 99-268 148-318 (479)
2 KOG0113|consensus 99.8 2.5E-18 5.5E-23 154.5 12.9 92 186-277 98-192 (335)
3 PLN03134 glycine-rich RNA-bind 99.7 5.1E-17 1.1E-21 135.9 12.2 85 186-270 31-115 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.6E-16 1.2E-20 146.9 11.7 82 189-270 269-350 (352)
5 PF00076 RRM_1: RNA recognitio 99.6 4.4E-15 9.5E-20 107.4 9.8 70 192-262 1-70 (70)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 3.8E-15 8.2E-20 141.2 11.3 81 188-268 2-82 (352)
7 TIGR01659 sex-lethal sex-letha 99.6 1.6E-14 3.5E-19 137.1 11.3 83 186-268 104-186 (346)
8 KOG0149|consensus 99.6 5.7E-15 1.2E-19 129.3 7.1 78 189-267 12-89 (247)
9 KOG0122|consensus 99.5 4E-14 8.7E-19 124.5 9.6 83 187-269 187-269 (270)
10 PF14259 RRM_6: RNA recognitio 99.5 1.4E-13 3E-18 100.2 9.5 70 192-262 1-70 (70)
11 KOG0121|consensus 99.5 4.6E-14 9.9E-19 112.9 7.2 80 188-267 35-114 (153)
12 KOG0126|consensus 99.5 3.2E-15 7E-20 126.1 0.5 80 188-267 34-113 (219)
13 TIGR01645 half-pint poly-U bin 99.5 1.8E-13 3.8E-18 137.3 11.7 80 188-267 106-185 (612)
14 TIGR01645 half-pint poly-U bin 99.5 1.8E-13 3.9E-18 137.2 11.0 81 188-268 203-283 (612)
15 KOG4207|consensus 99.5 7.9E-14 1.7E-18 119.9 6.4 79 190-268 14-92 (256)
16 KOG0125|consensus 99.5 2.2E-13 4.8E-18 124.2 8.7 81 186-268 93-173 (376)
17 TIGR01659 sex-lethal sex-letha 99.5 3.9E-13 8.4E-18 127.6 10.8 82 188-269 192-275 (346)
18 PLN03120 nucleic acid binding 99.4 4.7E-13 1E-17 120.6 10.4 76 189-268 4-79 (260)
19 TIGR01628 PABP-1234 polyadenyl 99.4 3.9E-13 8.6E-18 135.5 11.0 79 191-269 2-80 (562)
20 TIGR01622 SF-CC1 splicing fact 99.4 5.1E-13 1.1E-17 131.2 11.5 82 187-268 184-265 (457)
21 PLN03213 repressor of silencin 99.4 4.9E-13 1.1E-17 127.5 10.0 80 187-270 8-89 (759)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.4 8.5E-13 1.8E-17 131.3 12.0 81 188-268 294-374 (509)
23 smart00362 RRM_2 RNA recogniti 99.4 1.6E-12 3.5E-17 92.9 9.4 72 191-264 1-72 (72)
24 KOG0107|consensus 99.4 9.4E-13 2E-17 110.7 9.3 80 186-270 7-86 (195)
25 KOG0148|consensus 99.4 3.8E-13 8.3E-18 119.9 7.2 82 189-270 62-143 (321)
26 TIGR01628 PABP-1234 polyadenyl 99.4 1.6E-12 3.5E-17 131.1 11.1 83 187-270 283-365 (562)
27 TIGR01622 SF-CC1 splicing fact 99.4 2.1E-12 4.6E-17 126.8 11.4 82 186-268 86-167 (457)
28 smart00360 RRM RNA recognition 99.4 2.8E-12 6.2E-17 91.2 8.8 71 194-264 1-71 (71)
29 COG0724 RNA-binding proteins ( 99.4 2.3E-12 5E-17 114.9 10.3 80 189-268 115-194 (306)
30 KOG0117|consensus 99.4 3.9E-12 8.3E-17 120.2 11.5 83 187-269 81-164 (506)
31 PLN03121 nucleic acid binding 99.4 3.6E-12 7.9E-17 113.2 10.5 77 187-267 3-79 (243)
32 KOG0114|consensus 99.4 5.8E-12 1.3E-16 97.3 9.9 78 189-269 18-95 (124)
33 TIGR01648 hnRNP-R-Q heterogene 99.4 2.8E-12 6E-17 128.4 10.2 79 188-267 57-136 (578)
34 KOG0127|consensus 99.3 3.4E-12 7.4E-17 123.1 9.4 80 189-268 292-377 (678)
35 KOG0145|consensus 99.3 4.2E-12 9.1E-17 112.7 9.1 83 186-268 38-120 (360)
36 KOG0111|consensus 99.3 6.9E-13 1.5E-17 115.1 3.7 81 188-268 9-89 (298)
37 KOG0130|consensus 99.3 3.4E-12 7.3E-17 103.1 7.1 83 189-271 72-154 (170)
38 cd00590 RRM RRM (RNA recogniti 99.3 1.8E-11 3.9E-16 87.8 9.9 74 191-265 1-74 (74)
39 KOG0148|consensus 99.3 1.1E-11 2.4E-16 110.6 9.3 77 186-268 161-237 (321)
40 KOG0131|consensus 99.3 4.1E-12 8.8E-17 107.5 5.9 81 187-267 7-87 (203)
41 KOG0108|consensus 99.3 7.8E-12 1.7E-16 121.0 8.2 80 190-269 19-98 (435)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 2.6E-11 5.6E-16 120.3 11.2 78 186-268 272-350 (481)
43 KOG0146|consensus 99.2 5.9E-12 1.3E-16 112.2 5.0 85 186-270 282-366 (371)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 5.7E-11 1.2E-15 117.9 10.4 76 188-269 1-78 (481)
45 KOG0127|consensus 99.2 4.1E-11 9E-16 115.7 9.0 81 188-269 116-196 (678)
46 KOG0145|consensus 99.2 8.4E-11 1.8E-15 104.6 10.2 81 189-269 278-358 (360)
47 smart00361 RRM_1 RNA recogniti 99.2 8.3E-11 1.8E-15 86.1 8.1 62 203-264 2-70 (70)
48 KOG0144|consensus 99.2 1.5E-11 3.3E-16 115.8 5.2 81 189-270 124-207 (510)
49 TIGR01648 hnRNP-R-Q heterogene 99.2 1.1E-10 2.4E-15 116.9 10.8 75 187-269 231-307 (578)
50 KOG0147|consensus 99.2 4.5E-11 9.6E-16 115.7 7.6 80 188-267 277-356 (549)
51 KOG0124|consensus 99.2 1.9E-11 4E-16 113.1 4.5 78 190-267 114-191 (544)
52 PF13893 RRM_5: RNA recognitio 99.2 1.9E-10 4.1E-15 80.3 8.1 56 206-266 1-56 (56)
53 KOG0131|consensus 99.2 5.1E-11 1.1E-15 100.9 6.0 85 187-271 94-179 (203)
54 KOG4208|consensus 99.1 1.6E-10 3.4E-15 99.8 7.7 82 187-268 47-129 (214)
55 KOG0117|consensus 99.1 1.8E-10 3.9E-15 109.1 8.1 74 189-270 259-332 (506)
56 KOG0144|consensus 99.1 2E-10 4.3E-15 108.4 8.3 81 189-269 34-117 (510)
57 KOG0226|consensus 99.1 2.5E-10 5.5E-15 101.2 7.7 83 186-268 187-269 (290)
58 KOG0105|consensus 99.1 2.2E-10 4.7E-15 97.3 6.9 79 187-268 4-82 (241)
59 KOG4206|consensus 99.1 2.9E-10 6.3E-15 99.5 7.7 79 188-269 8-90 (221)
60 KOG0109|consensus 99.0 5.4E-10 1.2E-14 100.8 6.3 72 190-269 3-74 (346)
61 KOG0123|consensus 99.0 1.5E-09 3.1E-14 104.0 8.6 83 190-275 77-159 (369)
62 KOG0109|consensus 98.9 1.2E-09 2.5E-14 98.7 5.5 75 187-269 76-150 (346)
63 KOG0123|consensus 98.9 4.7E-09 1E-13 100.5 8.0 75 190-270 2-76 (369)
64 KOG0124|consensus 98.9 4.5E-09 9.7E-14 97.5 7.0 79 189-267 210-288 (544)
65 TIGR01642 U2AF_lg U2 snRNP aux 98.9 9.5E-09 2.1E-13 102.3 9.8 87 187-273 407-506 (509)
66 KOG4212|consensus 98.9 9E-09 1.9E-13 97.5 8.7 80 186-266 41-121 (608)
67 KOG0110|consensus 98.8 1.1E-08 2.3E-13 101.9 9.3 78 190-267 516-596 (725)
68 KOG4205|consensus 98.8 5E-09 1.1E-13 97.6 4.1 81 188-269 96-176 (311)
69 KOG4661|consensus 98.8 9.2E-09 2E-13 100.0 6.0 80 189-268 405-484 (940)
70 KOG0146|consensus 98.7 1.7E-08 3.7E-13 90.3 6.6 80 188-268 18-100 (371)
71 KOG0132|consensus 98.7 2.2E-08 4.8E-13 100.5 7.7 78 189-272 421-498 (894)
72 KOG4205|consensus 98.7 1E-08 2.2E-13 95.5 4.6 81 188-269 5-85 (311)
73 KOG0153|consensus 98.7 4.3E-08 9.2E-13 90.6 8.0 74 189-268 228-302 (377)
74 KOG0533|consensus 98.7 7.1E-08 1.5E-12 86.8 8.3 82 188-270 82-163 (243)
75 KOG0110|consensus 98.7 2.1E-08 4.5E-13 99.9 5.0 83 189-271 613-695 (725)
76 KOG1548|consensus 98.6 1.1E-07 2.4E-12 87.8 8.9 79 189-268 134-220 (382)
77 KOG1457|consensus 98.6 2.1E-07 4.4E-12 81.5 8.6 87 189-275 34-124 (284)
78 KOG4209|consensus 98.6 8.8E-08 1.9E-12 86.1 5.8 81 187-268 99-179 (231)
79 KOG0151|consensus 98.5 2.6E-07 5.7E-12 92.1 8.9 81 187-267 172-255 (877)
80 KOG4212|consensus 98.5 1.5E-07 3.2E-12 89.3 6.8 75 187-266 534-608 (608)
81 KOG0116|consensus 98.5 2.6E-07 5.7E-12 89.3 7.7 78 190-268 289-366 (419)
82 PF04059 RRM_2: RNA recognitio 98.3 6.1E-06 1.3E-10 64.2 9.2 79 190-268 2-86 (97)
83 KOG4454|consensus 98.3 4.8E-07 1E-11 79.1 2.5 81 187-269 7-87 (267)
84 KOG4660|consensus 98.2 9E-07 2E-11 86.4 3.7 70 188-262 74-143 (549)
85 KOG0106|consensus 98.2 1.8E-06 3.8E-11 76.3 4.2 71 190-268 2-72 (216)
86 KOG0120|consensus 98.1 2E-06 4.4E-11 84.4 4.7 80 188-267 288-367 (500)
87 KOG1190|consensus 98.0 2.5E-05 5.4E-10 73.9 8.3 74 189-267 297-371 (492)
88 KOG0147|consensus 97.9 6.8E-06 1.5E-10 80.2 2.4 79 189-268 179-257 (549)
89 PF11608 Limkain-b1: Limkain b 97.8 7.4E-05 1.6E-09 56.1 7.1 68 190-267 3-75 (90)
90 KOG1995|consensus 97.8 2.7E-05 5.9E-10 72.7 4.8 81 188-268 65-153 (351)
91 KOG4211|consensus 97.7 0.00013 2.8E-09 70.7 8.0 76 187-266 8-83 (510)
92 KOG4210|consensus 97.7 2.2E-05 4.8E-10 72.8 2.6 80 189-269 184-264 (285)
93 KOG1457|consensus 97.7 4.9E-05 1.1E-09 66.9 4.3 66 188-257 209-274 (284)
94 KOG4206|consensus 97.6 0.00023 4.9E-09 62.8 7.9 78 185-267 142-220 (221)
95 KOG2314|consensus 97.6 0.0004 8.6E-09 68.4 9.7 77 188-265 57-140 (698)
96 KOG4211|consensus 97.5 0.00024 5.1E-09 68.9 7.0 78 188-267 102-180 (510)
97 KOG3152|consensus 97.5 0.00011 2.4E-09 65.8 4.4 73 188-260 73-157 (278)
98 COG5175 MOT2 Transcriptional r 97.5 0.00059 1.3E-08 63.4 8.7 77 189-267 114-201 (480)
99 PF08777 RRM_3: RNA binding mo 97.4 0.00023 4.9E-09 56.3 5.1 71 190-266 2-77 (105)
100 KOG4849|consensus 97.4 0.00018 3.9E-09 67.0 5.0 78 189-266 80-159 (498)
101 KOG1190|consensus 97.2 0.00069 1.5E-08 64.4 6.6 79 187-269 412-491 (492)
102 KOG0129|consensus 97.2 0.00092 2E-08 65.3 6.9 65 186-250 367-432 (520)
103 KOG0106|consensus 97.2 0.00026 5.7E-09 62.6 2.9 72 188-267 98-169 (216)
104 PF08952 DUF1866: Domain of un 97.2 0.0015 3.3E-08 54.2 7.0 76 185-269 23-107 (146)
105 KOG1548|consensus 97.0 0.0091 2E-07 55.9 11.0 79 186-268 262-351 (382)
106 KOG0120|consensus 96.9 0.0028 6.1E-08 62.6 7.3 70 205-274 425-497 (500)
107 KOG1456|consensus 96.8 0.0079 1.7E-07 56.8 9.1 79 184-267 282-361 (494)
108 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0049 1.1E-07 42.5 5.2 52 190-248 2-53 (53)
109 KOG2193|consensus 96.6 0.002 4.4E-08 61.6 4.0 79 190-274 2-81 (584)
110 KOG4307|consensus 96.6 0.0065 1.4E-07 61.4 7.5 75 191-265 869-943 (944)
111 KOG0128|consensus 96.6 0.00044 9.6E-09 71.0 -0.9 78 190-268 737-814 (881)
112 KOG1855|consensus 96.4 0.0031 6.7E-08 60.4 4.1 67 187-253 229-308 (484)
113 KOG1456|consensus 96.2 0.024 5.1E-07 53.7 8.6 81 183-268 114-198 (494)
114 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.023 5.1E-07 44.4 7.3 77 189-267 6-90 (100)
115 KOG0112|consensus 96.2 0.0062 1.4E-07 63.1 4.8 76 187-268 453-530 (975)
116 KOG0105|consensus 96.2 0.017 3.8E-07 49.7 6.7 63 188-257 114-176 (241)
117 KOG0129|consensus 96.1 0.011 2.5E-07 57.9 6.0 61 189-250 259-325 (520)
118 KOG1365|consensus 96.1 0.0078 1.7E-07 57.0 4.5 78 189-267 280-360 (508)
119 KOG2416|consensus 95.9 0.0086 1.9E-07 59.6 4.2 77 185-267 440-520 (718)
120 KOG4307|consensus 95.9 0.013 2.8E-07 59.4 5.3 81 186-267 431-512 (944)
121 KOG2202|consensus 95.8 0.0049 1.1E-07 55.5 1.8 63 204-267 83-146 (260)
122 KOG1996|consensus 95.3 0.052 1.1E-06 49.9 6.7 68 204-271 301-369 (378)
123 KOG0115|consensus 95.2 0.021 4.5E-07 51.5 3.9 75 190-265 32-110 (275)
124 KOG0128|consensus 95.1 0.0015 3.3E-08 67.1 -4.1 64 190-253 668-731 (881)
125 KOG4676|consensus 94.9 0.052 1.1E-06 51.7 5.7 75 189-264 7-84 (479)
126 KOG1365|consensus 94.6 0.1 2.2E-06 49.7 6.8 59 191-250 163-225 (508)
127 KOG0112|consensus 94.5 0.01 2.3E-07 61.5 -0.1 86 180-266 363-448 (975)
128 KOG2068|consensus 94.1 0.042 9.1E-07 51.4 3.2 79 190-268 78-162 (327)
129 PF15023 DUF4523: Protein of u 93.6 0.32 6.9E-06 40.4 7.0 74 186-267 83-160 (166)
130 PF08675 RNA_bind: RNA binding 93.5 0.26 5.6E-06 37.2 5.8 55 189-252 9-63 (87)
131 KOG2253|consensus 92.5 0.083 1.8E-06 53.4 2.6 75 182-265 33-107 (668)
132 PF10309 DUF2414: Protein of u 92.5 0.72 1.6E-05 32.8 6.6 54 190-251 6-62 (62)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 91.3 0.26 5.7E-06 42.5 4.1 81 188-268 6-97 (176)
134 cd01921 cyclophilin_RRM cyclop 91.3 0.12 2.6E-06 44.0 1.9 23 98-120 144-166 (166)
135 KOG2135|consensus 91.1 0.16 3.5E-06 49.5 2.8 72 190-268 373-445 (526)
136 PF07576 BRAP2: BRCA1-associat 90.8 2.3 4.9E-05 33.9 8.6 75 190-266 14-92 (110)
137 KOG4210|consensus 90.5 0.11 2.4E-06 48.3 1.0 80 188-267 87-166 (285)
138 PF04847 Calcipressin: Calcipr 89.5 1.2 2.5E-05 38.8 6.5 61 202-268 8-70 (184)
139 KOG2318|consensus 89.1 3.3 7.2E-05 41.7 10.0 80 186-265 171-304 (650)
140 PF03880 DbpA: DbpA RNA bindin 88.5 2.6 5.6E-05 30.8 6.9 67 191-266 2-74 (74)
141 PF11767 SET_assoc: Histone ly 87.6 2.5 5.4E-05 30.4 6.1 55 200-263 11-65 (66)
142 KOG4660|consensus 87.5 0.84 1.8E-05 45.5 4.7 80 189-268 388-472 (549)
143 KOG2591|consensus 86.3 1.1 2.3E-05 44.9 4.7 69 189-264 175-247 (684)
144 KOG4574|consensus 85.4 0.67 1.5E-05 48.4 3.0 77 186-268 295-373 (1007)
145 KOG0804|consensus 85.0 3.5 7.7E-05 40.3 7.4 69 188-258 73-142 (493)
146 KOG2891|consensus 84.3 1.6 3.5E-05 40.1 4.6 82 188-269 148-268 (445)
147 KOG4285|consensus 83.8 2.4 5.2E-05 39.4 5.5 66 194-267 202-268 (350)
148 COG5638 Uncharacterized conser 79.4 8.7 0.00019 37.3 7.7 48 172-221 131-183 (622)
149 KOG4483|consensus 79.0 15 0.00033 35.5 9.2 54 189-249 391-445 (528)
150 KOG4008|consensus 71.7 11 0.00023 34.1 5.7 117 188-305 39-184 (261)
151 cd01923 cyclophilin_RING cyclo 68.8 2.9 6.3E-05 35.3 1.6 20 99-118 139-158 (159)
152 KOG4410|consensus 57.0 34 0.00075 31.8 6.3 46 190-241 331-377 (396)
153 cd01925 cyclophilin_CeCYP16-li 54.6 6.7 0.00014 33.5 1.3 22 99-120 146-167 (171)
154 PF10567 Nab6_mRNP_bdg: RNA-re 54.1 33 0.00071 32.0 5.7 88 180-267 6-106 (309)
155 KOG4676|consensus 48.4 4.4 9.6E-05 39.0 -0.8 63 190-257 152-214 (479)
156 KOG4454|consensus 47.3 4.5 9.7E-05 36.1 -0.9 64 190-254 81-148 (267)
157 COG0724 RNA-binding proteins ( 46.5 24 0.00052 30.5 3.6 63 186-248 222-284 (306)
158 KOG2193|consensus 43.3 1.9 4.2E-05 41.8 -4.0 74 189-266 80-154 (584)
159 KOG4019|consensus 37.3 34 0.00073 29.7 2.9 74 189-268 10-89 (193)
160 PF03468 XS: XS domain; Inter 33.4 53 0.0012 26.2 3.3 45 201-248 29-74 (116)
161 KOG3598|consensus 29.1 14 0.00031 41.3 -0.8 34 1-34 1608-1657(2220)
162 KOG2295|consensus 29.1 9.4 0.0002 38.4 -2.0 72 189-260 231-302 (648)
163 smart00596 PRE_C2HC PRE_C2HC d 23.1 1.4E+02 0.0031 21.6 3.7 60 204-266 2-62 (69)
164 PF15513 DUF4651: Domain of un 23.1 1.5E+02 0.0032 21.1 3.7 18 204-221 9-26 (62)
165 KOG3088|consensus 22.4 2.4E+02 0.0051 26.4 5.8 13 112-124 13-25 (313)
166 COG5178 PRP8 U5 snRNP spliceos 21.9 85 0.0018 35.0 3.2 36 189-224 72-107 (2365)
167 PHA00432 internal virion prote 20.4 28 0.00061 28.8 -0.5 63 19-90 56-118 (137)
168 PRK01178 rps24e 30S ribosomal 20.4 2.6E+02 0.0057 21.7 5.0 46 200-246 30-80 (99)
No 1
>KOG0415|consensus
Probab=100.00 E-value=3.1e-39 Score=293.74 Aligned_cols=170 Identities=66% Similarity=1.060 Sum_probs=166.7
Q ss_pred ccccCCccccceEeecCCCCCCCCCCCC-CCCCCchhhhhcCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhhHHhHh
Q psy15676 99 FKRKNDIRITHAVILEDPYEDLPELVYP-PSPEPTRELLANGLIGADEDIDETAGLSAQEIEELRAEREAKARATILEIV 177 (309)
Q Consensus 99 ~rp~~~iri~h~~il~dPf~~p~~l~~p-~~p~p~~~~~~~~~~~~de~~~~~e~~~~~e~~e~~~~~e~~~~~~~~e~~ 177 (309)
++||+||||.||+||+|||++||.|..| ++|+|+++++..+++..|++.+++++.+.+++++..++++++++|.+++++
T Consensus 148 ~rPykdIRI~HTiiLdDPFddpp~l~~p~rspsPt~e~l~~g~i~~de~~d~~~g~saeel~e~~~e~ea~~~A~iLEmv 227 (479)
T KOG0415|consen 148 NRPYKDIRIKHTIILDDPFDDPPDLAEPMRSPSPTPEQLVKGRIRLDEDEDDDEGLSAEELEEVLAEKEAKAQAVILEMV 227 (479)
T ss_pred CCcccceeeeeeEEecCCCCCchhhccCCCCCCCCHHHhhccccccCcccccccccCHHHHHHHHHHHHHHhhHhHHHHh
Confidence 7999999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC
Q psy15676 178 GDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID 257 (309)
Q Consensus 178 ~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~ 257 (309)
|++|.++..||.+.|||+.|+|.+|.++|..+|+.||.|.+|.+++|..||.+..||||+|.+.+++++|+..|++..|+
T Consensus 228 GDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 228 GDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred cCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeecC
Q psy15676 258 DRRIHARGEEW 268 (309)
Q Consensus 258 gr~I~V~~a~~ 268 (309)
+++|+|+|+++
T Consensus 308 DrRIHVDFSQS 318 (479)
T KOG0415|consen 308 DRRIHVDFSQS 318 (479)
T ss_pred cceEEeehhhh
Confidence 99999999986
No 2
>KOG0113|consensus
Probab=99.78 E-value=2.5e-18 Score=154.47 Aligned_cols=92 Identities=36% Similarity=0.582 Sum_probs=86.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.+|.+||||+.|+++++|..|+..|+.||.|..+.|+.|+.||+++|||||+|..+.++..|++..+|..|+|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC---chhhccchH
Q psy15676 266 EEW---NMWKRREEE 277 (309)
Q Consensus 266 a~~---~~~~~r~~~ 277 (309)
... ++|.+++..
T Consensus 178 ERgRTvkgW~PRRLG 192 (335)
T KOG0113|consen 178 ERGRTVKGWLPRRLG 192 (335)
T ss_pred ccccccccccccccc
Confidence 874 678777653
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=5.1e-17 Score=135.88 Aligned_cols=85 Identities=28% Similarity=0.359 Sum_probs=80.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
....++|||+|||+.+++++|+.+|++||.|.++.++.|..|+.++|||||+|.+.++|+.|+..||+..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+....
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=5.6e-16 Score=146.90 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=78.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
+.+|||+|||+.+++++|..+|++||.|.+++++.|..||.++|||||+|.+.++|.+|+..|||..++|+.|.|+|+.+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ch
Q psy15676 269 NM 270 (309)
Q Consensus 269 ~~ 270 (309)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 54
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=4.4e-15 Score=107.41 Aligned_cols=70 Identities=36% Similarity=0.680 Sum_probs=67.2
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEE
Q psy15676 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262 (309)
Q Consensus 192 lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~ 262 (309)
|||+|||+++|+++|..+|++||.|..+.+..+ .++.++|||||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6799999999999999999999999999999999885
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.60 E-value=3.8e-15 Score=141.22 Aligned_cols=81 Identities=26% Similarity=0.546 Sum_probs=78.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+.++|||+|||+.+++++|+.+|+.||+|.+|.+++|+.+|+++|||||+|.+.++|.+|+..|||..+.|+.|.|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy15676 268 W 268 (309)
Q Consensus 268 ~ 268 (309)
+
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=1.6e-14 Score=137.07 Aligned_cols=83 Identities=25% Similarity=0.452 Sum_probs=79.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
....++|||+|||+++|+++|+.+|+.||.|.+|+|+.|..|++++|||||+|.+.++|..|+..|+|..+.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
+.+
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 865
No 8
>KOG0149|consensus
Probab=99.56 E-value=5.7e-15 Score=129.28 Aligned_cols=78 Identities=31% Similarity=0.416 Sum_probs=73.6
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
-++||||||++.++.++|+.+|++||+|....++.|+.||+|+|||||+|.+.++|.+|++. .+-.||||+..|++|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 36899999999999999999999999999999999999999999999999999999999975 6689999999998875
No 9
>KOG0122|consensus
Probab=99.53 E-value=4e-14 Score=124.46 Aligned_cols=83 Identities=27% Similarity=0.349 Sum_probs=79.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
...++|-|.||+.++++++|.++|.+||.|.++.+.+|+.||.++|||||.|.+.++|.+|+..|||+-++.-.|.|.||
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 10
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.4e-13 Score=100.23 Aligned_cols=70 Identities=34% Similarity=0.639 Sum_probs=65.0
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEE
Q psy15676 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262 (309)
Q Consensus 192 lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~ 262 (309)
|||+|||+++++++|..+|+.||.|..+.+..++. |.++|+|||+|.+.++|..|+..++|..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 89999999999999999999999999999999874
No 11
>KOG0121|consensus
Probab=99.50 E-value=4.6e-14 Score=112.87 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=76.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
.++|||||||++.++|++|.++|+++|.|..|.|-.|+.+-.+.|||||+|.+.++|+.|++.++|..++.++|.+++.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999864
No 12
>KOG0126|consensus
Probab=99.50 E-value=3.2e-15 Score=126.08 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=76.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
.+.-|||||||+..|+.||..+|++||.|.+|.+++|+.||+|+||||+.|++..+.-.|+..|||..|.||.|+|+...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998653
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=1.8e-13 Score=137.28 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
..++|||+||++.+++++|+.+|++||.|.++.++.|+.||+++|||||+|.+.++|..|+..|||..++|+.|.|..+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998654
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=1.8e-13 Score=137.22 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=77.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
..++|||+||++++++++|+.+|+.||.|.++.+.+++.+|.++|||||+|.+.++|.+|+..|||+.++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy15676 268 W 268 (309)
Q Consensus 268 ~ 268 (309)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 5
No 15
>KOG4207|consensus
Probab=99.46 E-value=7.9e-14 Score=119.91 Aligned_cols=79 Identities=33% Similarity=0.513 Sum_probs=77.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
.+|-|-||.+-|+.++|..+|++||.|.+|.|++|+.|+.++|||||-|....+|+.|+..|+|..++|+.|.|++|+.
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999985
No 16
>KOG0125|consensus
Probab=99.45 E-value=2.2e-13 Score=124.18 Aligned_cols=81 Identities=25% Similarity=0.422 Sum_probs=75.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
+.-.++|+|+|+|+..-+.||+.+|++||.|.+|+|+.+. .-|||||||+|++.++|++|-.+|+|..|.||+|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3445899999999999999999999999999999999986 35899999999999999999999999999999999999
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
|..
T Consensus 171 ATa 173 (376)
T KOG0125|consen 171 ATA 173 (376)
T ss_pred cch
Confidence 874
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.45 E-value=3.9e-13 Score=127.64 Aligned_cols=82 Identities=28% Similarity=0.526 Sum_probs=76.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC--eeEEEEe
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD--RRIHARG 265 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g--r~I~V~~ 265 (309)
..++|||+|||+.+|+++|+++|++||.|..+.++.++.||+++|||||+|.+.++|++|+..||+..+.| ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999998876 7899998
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8753
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.7e-13 Score=120.57 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=70.6
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
.++|||+|||+.+++++|+.+|+.||.|.++.|+.+.. ++|||||+|.+.++|..|+. |+|..|+|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998763 56999999999999999995 999999999999999863
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.44 E-value=3.9e-13 Score=135.54 Aligned_cols=79 Identities=32% Similarity=0.477 Sum_probs=76.1
Q ss_pred EEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 191 VLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 191 ~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
+|||+|||+++|+++|..+|++||.|.+|++++|..|++++|||||+|.+.++|.+|+..+|+..+.|+.|+|.+++.+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999998643
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.44 E-value=5.1e-13 Score=131.19 Aligned_cols=82 Identities=24% Similarity=0.397 Sum_probs=78.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+...+|||+|||+.+|+++|..+|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q psy15676 267 EW 268 (309)
Q Consensus 267 ~~ 268 (309)
..
T Consensus 264 ~~ 265 (457)
T TIGR01622 264 QD 265 (457)
T ss_pred cC
Confidence 63
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=4.9e-13 Score=127.52 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=73.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCH--HHHHHHHHHcCCceeCCeeEEEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP--KSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~--~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..+.+||||||++.+++++|...|+.||.|.++.|+ +.|| +|||||+|.+. .++.+|+..|||..+.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345799999999999999999999999999999999 4567 89999999987 68999999999999999999999
Q ss_pred eecCch
Q psy15676 265 GEEWNM 270 (309)
Q Consensus 265 ~a~~~~ 270 (309)
.|++..
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 998743
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.43 E-value=8.5e-13 Score=131.28 Aligned_cols=81 Identities=21% Similarity=0.425 Sum_probs=77.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+..+|||+|||+.+++++|..+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q psy15676 268 W 268 (309)
Q Consensus 268 ~ 268 (309)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
No 23
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.6e-12 Score=92.91 Aligned_cols=72 Identities=31% Similarity=0.615 Sum_probs=67.3
Q ss_pred EEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 191 VLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 191 ~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
+|||+|||..++.++|..+|.+||.+..+.+..+. +.++|+|||+|.+.++|..|+..++|..++|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988776 7789999999999999999999999999999998873
No 24
>KOG0107|consensus
Probab=99.41 E-value=9.4e-13 Score=110.65 Aligned_cols=80 Identities=28% Similarity=0.408 Sum_probs=72.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
-+-.++||||||+..+++.+|...|..||.+.++-|..+ +.|||||+|++..+|+.|+..|+|..|.|.+|.|.+
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 345789999999999999999999999999999988764 459999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+....
T Consensus 82 S~G~~ 86 (195)
T KOG0107|consen 82 STGRP 86 (195)
T ss_pred ecCCc
Confidence 97643
No 25
>KOG0148|consensus
Probab=99.41 E-value=3.8e-13 Score=119.86 Aligned_cols=82 Identities=32% Similarity=0.479 Sum_probs=79.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
...+||+-|.+.++.++|++.|.+||.|.++++++|..|++|+|||||.|.+.++|+.|+..|||.-|++|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ch
Q psy15676 269 NM 270 (309)
Q Consensus 269 ~~ 270 (309)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.39 E-value=1.6e-12 Score=131.10 Aligned_cols=83 Identities=23% Similarity=0.391 Sum_probs=77.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
....+|||+||++.+++++|+.+|++||.|.++.++.+ .+|.++|||||.|.+.++|.+|+..|||..++|++|.|.+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45678999999999999999999999999999999999 58999999999999999999999999999999999999999
Q ss_pred cCch
Q psy15676 267 EWNM 270 (309)
Q Consensus 267 ~~~~ 270 (309)
+.+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 7543
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.38 E-value=2.1e-12 Score=126.84 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=76.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+..+|||+|||+.+++++|..+|++||.|..|.++.|+.||.++|||||+|.+.++|.+|+. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456899999999999999999999999999999999999999999999999999999999995 899999999999998
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
++.
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 754
No 28
>smart00360 RRM RNA recognition motif.
Probab=99.38 E-value=2.8e-12 Score=91.18 Aligned_cols=71 Identities=34% Similarity=0.640 Sum_probs=67.1
Q ss_pred ecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 194 VCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 194 V~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
|+|||..+++++|..+|++||.|..+.+..++.++.++|||||+|.+.++|..|+..+++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999888789999999999999999999999999999999998873
No 29
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=2.3e-12 Score=114.90 Aligned_cols=80 Identities=31% Similarity=0.545 Sum_probs=77.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
.++|||+|||+.+++++|..+|..||.|..+.+..++.+|.++|||||.|.+.++|..|+..++|..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999998999999999999999999999999999999999999999763
No 30
>KOG0117|consensus
Probab=99.37 E-value=3.9e-12 Score=120.22 Aligned_cols=83 Identities=25% Similarity=0.378 Sum_probs=78.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC-CeeEEEEe
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID-DRRIHARG 265 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~-gr~I~V~~ 265 (309)
+.++-||||+||.++.|++|.-+|++.|.|-.+++++|+.+|.++|||||+|.+.+.|+.|++.||++.|- |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 44689999999999999999999999999999999999999999999999999999999999999999885 99999988
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
+..+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 8753
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.6e-12 Score=113.24 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=69.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+.+.+|||+||++.+|+++|+.+|+.||.|.+|.|++|. ...|||||+|.+.++++.|+ .|+|..|.|++|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 346899999999999999999999999999999999884 44589999999999999999 59999999999998764
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 32
>KOG0114|consensus
Probab=99.36 E-value=5.8e-12 Score=97.35 Aligned_cols=78 Identities=14% Similarity=0.259 Sum_probs=71.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
...|||+|||+.+|.++...+|++||.|..+++-..+ ..+|-|||.|++..+|.+|+..|+|..++++.+.|-+-++
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 5789999999999999999999999999999986554 3579999999999999999999999999999999999876
Q ss_pred c
Q psy15676 269 N 269 (309)
Q Consensus 269 ~ 269 (309)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.35 E-value=2.8e-12 Score=128.39 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC-CeeEEEEee
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID-DRRIHARGE 266 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~-gr~I~V~~a 266 (309)
..++|||+|||+++++++|..+|++||.|.+++|++| .+|.++|||||+|.+.++|.+|+..||+..+. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 78999999999999999999999999998885 788777765
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 34
>KOG0127|consensus
Probab=99.34 E-value=3.4e-12 Score=123.07 Aligned_cols=80 Identities=30% Similarity=0.441 Sum_probs=74.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHc-----CC-ceeCCeeEE
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM-----DN-VLIDDRRIH 262 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l-----~g-~~i~gr~I~ 262 (309)
+.+|||.|||+++|+++|...|++||.|.++.++.++.||.++|.|||.|.+..+|..||... .| ..++||.|.
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 479999999999999999999999999999999999999999999999999999999999865 23 789999999
Q ss_pred EEeecC
Q psy15676 263 ARGEEW 268 (309)
Q Consensus 263 V~~a~~ 268 (309)
|..|-.
T Consensus 372 v~~Av~ 377 (678)
T KOG0127|consen 372 VTLAVT 377 (678)
T ss_pred eeeccc
Confidence 999864
No 35
>KOG0145|consensus
Probab=99.34 E-value=4.2e-12 Score=112.73 Aligned_cols=83 Identities=28% Similarity=0.537 Sum_probs=78.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
....+.|.|.=||...|+++++++|+..|+|++|++++|+.||.|.|||||.|.+..+|++|+..+||..+..+.|+|+|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
|++
T Consensus 118 ARP 120 (360)
T KOG0145|consen 118 ARP 120 (360)
T ss_pred ccC
Confidence 986
No 36
>KOG0111|consensus
Probab=99.33 E-value=6.9e-13 Score=115.10 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=78.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
..++||||+|...+++.-|...|-+||.|..+.++.|..+++.+|||||+|...++|.+|+..||+..+.||.|+|++|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy15676 268 W 268 (309)
Q Consensus 268 ~ 268 (309)
+
T Consensus 89 P 89 (298)
T KOG0111|consen 89 P 89 (298)
T ss_pred C
Confidence 6
No 37
>KOG0130|consensus
Probab=99.32 E-value=3.4e-12 Score=103.08 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=79.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
+..|||.++...+|++++...|..||.|.++.+-.|+.||..+|||+|+|.+...|++|+..+||..+.|..|.|+|+-.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred chh
Q psy15676 269 NMW 271 (309)
Q Consensus 269 ~~~ 271 (309)
++.
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 443
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=1.8e-11 Score=87.84 Aligned_cols=74 Identities=35% Similarity=0.601 Sum_probs=68.6
Q ss_pred EEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 191 VLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 191 ~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
+|+|+|||+.+++++|..+|..||.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887654 7789999999999999999999999999999999864
No 39
>KOG0148|consensus
Probab=99.29 E-value=1.1e-11 Score=110.62 Aligned_cols=77 Identities=23% Similarity=0.443 Sum_probs=72.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.+.+++|||||++..+|+++|+..|++||.|.+|++..++ |||||.|++.++|..|+..|||..|.|..+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 4667999999999999999999999999999999998764 8999999999999999999999999999999998
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
-+.
T Consensus 235 GKe 237 (321)
T KOG0148|consen 235 GKE 237 (321)
T ss_pred ccc
Confidence 663
No 40
>KOG0131|consensus
Probab=99.29 E-value=4.1e-12 Score=107.47 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=78.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
....|||||||+.-++++.|.++|-+.|+|.++.+++|+.|+..+||||++|.++++|+-|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 41
>KOG0108|consensus
Probab=99.28 E-value=7.8e-12 Score=120.97 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=77.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
+.+||||+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.+..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998753
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.26 E-value=2.6e-11 Score=120.29 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=72.3
Q ss_pred CCCCcEEEecCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNP-VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~-~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
.+++++|||+||++ .+|+++|..+|+.||.|.+|.++.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45778999999998 69999999999999999999998763 5999999999999999999999999999999999
Q ss_pred eecC
Q psy15676 265 GEEW 268 (309)
Q Consensus 265 ~a~~ 268 (309)
+++.
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 9864
No 43
>KOG0146|consensus
Probab=99.25 E-value=5.9e-12 Score=112.20 Aligned_cols=85 Identities=28% Similarity=0.429 Sum_probs=81.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
+|.+|.|||-.||....+.+|..+|-.||.|.+.++..|+.|..|+|||||.|++..+++.|+..|||+.|+-++|+|++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
-+++.
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 87643
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.21 E-value=5.7e-11 Score=117.88 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=69.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHH--cCCceeCCeeEEEEe
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK--MDNVLIDDRRIHARG 265 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~--l~g~~i~gr~I~V~~ 265 (309)
|.++|||+|||+.+++++|..+|++||.|.++.++. ++|||||+|.+.++|..|+.. +++..++|++|.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 468999999999999999999999999999999875 358999999999999999986 478999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
+...
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 9753
No 45
>KOG0127|consensus
Probab=99.21 E-value=4.1e-11 Score=115.71 Aligned_cols=81 Identities=30% Similarity=0.345 Sum_probs=75.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+...|.|.|||+.+...+|..+|+.||.|..+.|++.+. |+..|||||.|....+|..|++.|||..|+||+|-|+||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 457899999999999999999999999999999997765 6666999999999999999999999999999999999998
Q ss_pred Cc
Q psy15676 268 WN 269 (309)
Q Consensus 268 ~~ 269 (309)
++
T Consensus 195 ~K 196 (678)
T KOG0127|consen 195 DK 196 (678)
T ss_pred cc
Confidence 63
No 46
>KOG0145|consensus
Probab=99.21 E-value=8.4e-11 Score=104.55 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=77.6
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
+..|||-||.+++.+.-|..+|++||.|.++++++|..|.+.+|||||.+.+.+.|..|+..|||..++++.|.|.|-.+
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q psy15676 269 N 269 (309)
Q Consensus 269 ~ 269 (309)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 47
>smart00361 RRM_1 RNA recognition motif.
Probab=99.20 E-value=8.3e-11 Score=86.11 Aligned_cols=62 Identities=24% Similarity=0.455 Sum_probs=56.1
Q ss_pred HHHHHHHHh----cCCceeEEE-EeeeCCC--CCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 203 DDDLEIIFS----RFGKVNCCE-VIRDKVT--GDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 203 e~~L~~~F~----~fG~I~~v~-i~~d~~t--g~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
+++|..+|+ .||.|.++. ++.++.+ |.++|||||+|.+.++|.+|+..|||..++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 568888998 999999995 7777766 9999999999999999999999999999999999863
No 48
>KOG0144|consensus
Probab=99.20 E-value=1.5e-11 Score=115.82 Aligned_cols=81 Identities=26% Similarity=0.432 Sum_probs=74.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc-eeC--CeeEEEEe
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV-LID--DRRIHARG 265 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~-~i~--gr~I~V~~ 265 (309)
+.+||||-|+..+||.+++++|++||.|++|.|++|.. |.++|||||.|.+.+.|..|++.|||. .+. ..+|.|.|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 67899999999999999999999999999999999985 899999999999999999999999994 454 57899999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|..+.
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 97643
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.18 E-value=1.1e-10 Score=116.94 Aligned_cols=75 Identities=25% Similarity=0.385 Sum_probs=69.1
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcC--CceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRF--GKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~f--G~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
...++|||+||+.++++++|+.+|++| |.|.+|.++ ++||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 999998765 3699999999999999999999999999999999
Q ss_pred eecCc
Q psy15676 265 GEEWN 269 (309)
Q Consensus 265 ~a~~~ 269 (309)
+|++.
T Consensus 303 ~Akp~ 307 (578)
T TIGR01648 303 LAKPV 307 (578)
T ss_pred EccCC
Confidence 99864
No 50
>KOG0147|consensus
Probab=99.18 E-value=4.5e-11 Score=115.72 Aligned_cols=80 Identities=26% Similarity=0.415 Sum_probs=75.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
|...||||||.++++++.|+.+|..||.|..+.+..|..||.++||||++|.+.++|.+|+..|||+.|-|+.|+|..-.
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 33449999999999999999999999999999999999999999999999999999999999999999999999987654
No 51
>KOG0124|consensus
Probab=99.17 E-value=1.9e-11 Score=113.10 Aligned_cols=78 Identities=22% Similarity=0.409 Sum_probs=75.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+++|||.+.+...++.|+..|..||+|.++.+.+|+.||+.+|||||+|+-.+.|..|++.|||..++||.|+|....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998543
No 52
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1.9e-10 Score=80.27 Aligned_cols=56 Identities=25% Similarity=0.464 Sum_probs=50.3
Q ss_pred HHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 206 LEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 206 L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
|..+|++||.|.++.+..+. +|+|||+|.+.++|..|+..|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886543 589999999999999999999999999999999987
No 53
>KOG0131|consensus
Probab=99.16 E-value=5.1e-11 Score=100.90 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=78.5
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeE-EEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNC-CEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~-v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
+.+..+||+||.+.+++..|...|+.||.+.. -.++++..||.++|||||.|.+.+.+.+|+..|||..+.+++|+|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 45689999999999999999999999999866 48899999999999999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
+..+..
T Consensus 174 a~k~~~ 179 (203)
T KOG0131|consen 174 AFKKDT 179 (203)
T ss_pred EEecCC
Confidence 976543
No 54
>KOG4208|consensus
Probab=99.12 E-value=1.6e-10 Score=99.79 Aligned_cols=82 Identities=27% Similarity=0.350 Sum_probs=75.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcC-CceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRF-GKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~f-G~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.....+||..+|..+.+..+..+|.+| |.+...++.+++.||.|+|||||+|++.+.|+-|.+.||++.+.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345689999999999999999999888 7888888889999999999999999999999999999999999999999887
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
-.+
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 544
No 55
>KOG0117|consensus
Probab=99.11 E-value=1.8e-10 Score=109.08 Aligned_cols=74 Identities=28% Similarity=0.394 Sum_probs=69.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
-+.|||.||+.++|++.|+..|++||.|..|..++| ||||.|.+.++|.+|++.|||..|+|..|.|.+|++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 468999999999999999999999999999987754 999999999999999999999999999999999987
Q ss_pred ch
Q psy15676 269 NM 270 (309)
Q Consensus 269 ~~ 270 (309)
..
T Consensus 331 ~~ 332 (506)
T KOG0117|consen 331 VD 332 (506)
T ss_pred hh
Confidence 43
No 56
>KOG0144|consensus
Probab=99.11 E-value=2e-10 Score=108.36 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=73.4
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc-eeCC--eeEEEEe
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV-LIDD--RRIHARG 265 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~-~i~g--r~I~V~~ 265 (309)
.-++|||.+|...+|.||+.+|++||.|.+|.+++|+.||.++|||||.|.+.++|.+|+..|++. .+-| .+|.|.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 357999999999999999999999999999999999999999999999999999999999999884 4544 6788888
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|...
T Consensus 114 Ad~E 117 (510)
T KOG0144|consen 114 ADGE 117 (510)
T ss_pred cchh
Confidence 8753
No 57
>KOG0226|consensus
Probab=99.09 E-value=2.5e-10 Score=101.20 Aligned_cols=83 Identities=33% Similarity=0.513 Sum_probs=77.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.....+||+|.|.-.++.+.|...|.+|-.....++++|+.||+++||+||.|.+..++..|+..|+|..++.++|.+.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
+.|
T Consensus 267 S~w 269 (290)
T KOG0226|consen 267 SEW 269 (290)
T ss_pred hhH
Confidence 744
No 58
>KOG0105|consensus
Probab=99.09 E-value=2.2e-10 Score=97.31 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=70.7
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
...++|||+|||.++.+.++..+|.+||.|..|.+-.. -...+||||+|++..+|+.|+..-+|..++|.+|.|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35689999999999999999999999999999887432 234689999999999999999999999999999999999
Q ss_pred cC
Q psy15676 267 EW 268 (309)
Q Consensus 267 ~~ 268 (309)
..
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 74
No 59
>KOG4206|consensus
Probab=99.08 E-value=2.9e-10 Score=99.46 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCcEEEecCCCCCCCHHHHHH----HHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 188 PENVLFVCKLNPVTSDDDLEI----IFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~----~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
|..||||.||+.-+..++|+. +|++||.|..|.... |.+.+|-|||.|.+.+.|-.|+..|+|+.+.|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 444999999999999998877 999999999887754 7889999999999999999999999999999999999
Q ss_pred EeecCc
Q psy15676 264 RGEEWN 269 (309)
Q Consensus 264 ~~a~~~ 269 (309)
+||.++
T Consensus 85 qyA~s~ 90 (221)
T KOG4206|consen 85 QYAKSD 90 (221)
T ss_pred ecccCc
Confidence 999874
No 60
>KOG0109|consensus
Probab=99.00 E-value=5.4e-10 Score=100.85 Aligned_cols=72 Identities=22% Similarity=0.519 Sum_probs=68.1
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
..|||||||..+++.+|+.+|++||.|..|.|+++ ||||..++...++.|+..|+|..|+|..|+|.-|+++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999864 8999999999999999999999999999999998875
No 61
>KOG0123|consensus
Probab=98.98 E-value=1.5e-09 Score=104.02 Aligned_cols=83 Identities=27% Similarity=0.468 Sum_probs=75.7
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
..+||.||+++++..+|..+|+.||.|.+|++..+.. | ++|| ||+|.++++|.+|+..+||..+.|+.|-|.....+
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 3499999999999999999999999999999999874 5 9999 99999999999999999999999999999998876
Q ss_pred hhhccc
Q psy15676 270 MWKRRE 275 (309)
Q Consensus 270 ~~~~r~ 275 (309)
.++...
T Consensus 154 ~er~~~ 159 (369)
T KOG0123|consen 154 EEREAP 159 (369)
T ss_pred hhhccc
Confidence 655443
No 62
>KOG0109|consensus
Probab=98.93 E-value=1.2e-09 Score=98.70 Aligned_cols=75 Identities=25% Similarity=0.545 Sum_probs=70.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.+..+|+|||+.+.++..+|+..|.+||+|.+|.|++ +|+||.|.-.++|..|+..|+|..++|++++|+++
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 3567999999999999999999999999999999975 59999999999999999999999999999999999
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
.+.
T Consensus 148 tsr 150 (346)
T KOG0109|consen 148 TSR 150 (346)
T ss_pred ccc
Confidence 863
No 63
>KOG0123|consensus
Probab=98.88 E-value=4.7e-09 Score=100.54 Aligned_cols=75 Identities=31% Similarity=0.373 Sum_probs=70.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
..|||| +++|+..|..+|+.+|++.++++++|. | |.|||||.|.+..+|++|+..||...+.|++|++.+++.+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 6 9999999999999999999999999999999999999864
Q ss_pred h
Q psy15676 270 M 270 (309)
Q Consensus 270 ~ 270 (309)
.
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 3
No 64
>KOG0124|consensus
Probab=98.86 E-value=4.5e-09 Score=97.50 Aligned_cols=79 Identities=22% Similarity=0.413 Sum_probs=75.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
-++|||..+.++.+++||+++|+.||.|.+|.+.+++.++..+||||++|.+..+...|+..||=+.++|.-|+|..+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 3799999999999999999999999999999999999888999999999999999999999999999999999998765
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.86 E-value=9.5e-09 Score=102.31 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=72.0
Q ss_pred CCCcEEEecCCCCC----------CCHHHHHHHHhcCCceeEEEEeeeC---CCCCcccEEEEEecCHHHHHHHHHHcCC
Q psy15676 187 PPENVLFVCKLNPV----------TSDDDLEIIFSRFGKVNCCEVIRDK---VTGDSLQYAFVEFDNPKSCEDAYLKMDN 253 (309)
Q Consensus 187 ~~~~~lfV~nL~~~----------~te~~L~~~F~~fG~I~~v~i~~d~---~tg~skG~aFV~F~~~~~a~~Al~~l~g 253 (309)
.+..+|+|.||... ...++|+..|++||.|..|.|+++. .++.+.|+|||+|.+.++|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 35678999999642 1125789999999999999998753 3466789999999999999999999999
Q ss_pred ceeCCeeEEEEeecCchhhc
Q psy15676 254 VLIDDRRIHARGEEWNMWKR 273 (309)
Q Consensus 254 ~~i~gr~I~V~~a~~~~~~~ 273 (309)
..|+|+.|.|.|.....|..
T Consensus 487 r~~~gr~v~~~~~~~~~~~~ 506 (509)
T TIGR01642 487 RKFNDRVVVAAFYGEDCYKA 506 (509)
T ss_pred CEECCeEEEEEEeCHHHhhc
Confidence 99999999999987655543
No 66
>KOG4212|consensus
Probab=98.85 E-value=9e-09 Score=97.45 Aligned_cols=80 Identities=21% Similarity=0.409 Sum_probs=73.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHH-hcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIF-SRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F-~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
....+.+||.|+|+++...+|+.+| .+.|.|..|.+..|. +|+++|+|.|+|.+++.+++|++.||.+.+.||+|.|.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 3445679999999999999999999 688999999999997 69999999999999999999999999999999999986
Q ss_pred ee
Q psy15676 265 GE 266 (309)
Q Consensus 265 ~a 266 (309)
-.
T Consensus 120 Ed 121 (608)
T KOG4212|consen 120 ED 121 (608)
T ss_pred cc
Confidence 43
No 67
>KOG0110|consensus
Probab=98.84 E-value=1.1e-08 Score=101.94 Aligned_cols=78 Identities=32% Similarity=0.458 Sum_probs=70.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCC---CCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVT---GDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~t---g~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++|||.||++++|.++|...|...|.|.++.|..-+.. -.|.|||||+|.+.++|+.|++.|+|+.++|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988765432 135699999999999999999999999999999999999
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 68
>KOG4205|consensus
Probab=98.77 E-value=5e-09 Score=97.61 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=75.7
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
...+|||++||+++++.+++..|.+||.|..+.++.|..+.+++||+||.|.+.+++.+++. ...+.|+|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 34699999999999999999999999999999999999999999999999999999999985 57899999999999998
Q ss_pred Cc
Q psy15676 268 WN 269 (309)
Q Consensus 268 ~~ 269 (309)
++
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 64
No 69
>KOG4661|consensus
Probab=98.77 E-value=9.2e-09 Score=100.05 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=75.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
+..|||++|+..+...+|+.+|++||.|.-.+++.+..+.-.+||+||++.+.+.|.+||..|+-+.+.|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46899999999999999999999999999999999988888899999999999999999999999999999999999874
No 70
>KOG0146|consensus
Probab=98.75 E-value=1.7e-08 Score=90.32 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=71.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc-eeC--CeeEEEE
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV-LID--DRRIHAR 264 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~-~i~--gr~I~V~ 264 (309)
.+++||||-|+..-+|+|++.+|..||.|.+|.+.+..+ |.++|+|||.|.+..+|..|+..|+|. .+- ...|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 568999999999999999999999999999999999875 999999999999999999999999994 333 4668999
Q ss_pred eecC
Q psy15676 265 GEEW 268 (309)
Q Consensus 265 ~a~~ 268 (309)
|+..
T Consensus 97 ~ADT 100 (371)
T KOG0146|consen 97 FADT 100 (371)
T ss_pred eccc
Confidence 9864
No 71
>KOG0132|consensus
Probab=98.74 E-value=2.2e-08 Score=100.52 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=71.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
.+|||||+|+..+++.+|..+|+.||.|.+|.++. ++|+|||.+....+|.+|+.+|++..+.++.|+|.|+.+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 36999999999999999999999999999998864 468999999999999999999999999999999999987
Q ss_pred chhh
Q psy15676 269 NMWK 272 (309)
Q Consensus 269 ~~~~ 272 (309)
++.+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 6543
No 72
>KOG4205|consensus
Probab=98.72 E-value=1e-08 Score=95.49 Aligned_cols=81 Identities=28% Similarity=0.476 Sum_probs=73.7
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
..+++||++|++.++++.|+..|++||.|..|.+++|+.|++++||+||+|.+.+.+..++. ..-+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 46899999999999999999999999999999999999999999999999999888888875 35688999999888876
Q ss_pred Cc
Q psy15676 268 WN 269 (309)
Q Consensus 268 ~~ 269 (309)
+.
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 53
No 73
>KOG0153|consensus
Probab=98.70 E-value=4.3e-08 Score=90.62 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=65.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHH-cCCceeCCeeEEEEeec
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK-MDNVLIDDRRIHARGEE 267 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~-l~g~~i~gr~I~V~~a~ 267 (309)
-.+|||+||...+++.+|+.+|.+||.|.++.+... +|+|||+|.+.++|+.|... ++...|+|++|.|.|..
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 369999999999999999999999999999988653 36999999999999988765 55588999999999987
Q ss_pred C
Q psy15676 268 W 268 (309)
Q Consensus 268 ~ 268 (309)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 74
>KOG0533|consensus
Probab=98.67 E-value=7.1e-08 Score=86.77 Aligned_cols=82 Identities=27% Similarity=0.304 Sum_probs=75.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
-..+|+|+||++.++++||.++|..||.+..+.+.+++ +|.+.|.|-|.|...++|..|++.++|..++|+++++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999999999999998887 69999999999999999999999999999999999998876
Q ss_pred Cch
Q psy15676 268 WNM 270 (309)
Q Consensus 268 ~~~ 270 (309)
+..
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 543
No 75
>KOG0110|consensus
Probab=98.66 E-value=2.1e-08 Score=99.92 Aligned_cols=83 Identities=14% Similarity=0.309 Sum_probs=76.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
.+.|.|.|+|+..+-.+++.+|+.||.+.+|+++.-...+.++|||||.|-+...|..|+..|.++.+.||+|+++||.+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 46899999999999999999999999999999987655677899999999999999999999999999999999999987
Q ss_pred chh
Q psy15676 269 NMW 271 (309)
Q Consensus 269 ~~~ 271 (309)
...
T Consensus 693 d~~ 695 (725)
T KOG0110|consen 693 DNT 695 (725)
T ss_pred chH
Confidence 654
No 76
>KOG1548|consensus
Probab=98.65 E-value=1.1e-07 Score=87.82 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=72.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCcee--------EEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCee
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVN--------CCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR 260 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~--------~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~ 260 (309)
+..|||+|||.++|.+++..+|++||.|. .|++.++.. |..+|=|.+.|...+++..|+..|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 35699999999999999999999999884 367777764 999999999999999999999999999999999
Q ss_pred EEEEeecC
Q psy15676 261 IHARGEEW 268 (309)
Q Consensus 261 I~V~~a~~ 268 (309)
|+|+.|+-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999974
No 77
>KOG1457|consensus
Probab=98.59 E-value=2.1e-07 Score=81.55 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=70.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeee-CCCCCcccEEEEEecCHHHHHHHHHHcCCceeC---CeeEEEE
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRD-KVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID---DRRIHAR 264 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d-~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~---gr~I~V~ 264 (309)
-+||||++||.++...+|..+|..|-..+.+.+-.. +.....+-+||++|.+..+|..|...|||..+| +..|+++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 479999999999999999999999876666655332 211223479999999999999999999999998 7899999
Q ss_pred eecCchhhccc
Q psy15676 265 GEEWNMWKRRE 275 (309)
Q Consensus 265 ~a~~~~~~~r~ 275 (309)
+|+++....++
T Consensus 114 lAKSNtK~kr~ 124 (284)
T KOG1457|consen 114 LAKSNTKRKRR 124 (284)
T ss_pred ehhcCcccccC
Confidence 99986544443
No 78
>KOG4209|consensus
Probab=98.57 E-value=8.8e-08 Score=86.06 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=75.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.....+||+|+.+.+|.+++...|+.||.|..+.+..|+.+|.++|||||+|.+.+.++.||. |+|..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345789999999999999999999999999999999999999999999999999999999998 9999999999999887
Q ss_pred cC
Q psy15676 267 EW 268 (309)
Q Consensus 267 ~~ 268 (309)
+.
T Consensus 178 r~ 179 (231)
T KOG4209|consen 178 RT 179 (231)
T ss_pred ee
Confidence 64
No 79
>KOG0151|consensus
Probab=98.54 E-value=2.6e-07 Score=92.10 Aligned_cols=81 Identities=21% Similarity=0.385 Sum_probs=72.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCC---CCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKV---TGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~---tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
|..+.+||+||++.++++.|...|++||+|.+++|++.+. ..+.+-+|||.|.+..+++.|++.|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 3456899999999999999999999999999999987652 2345678999999999999999999999999999999
Q ss_pred Eeec
Q psy15676 264 RGEE 267 (309)
Q Consensus 264 ~~a~ 267 (309)
.|++
T Consensus 252 gWgk 255 (877)
T KOG0151|consen 252 GWGK 255 (877)
T ss_pred cccc
Confidence 9885
No 80
>KOG4212|consensus
Probab=98.54 E-value=1.5e-07 Score=89.35 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=68.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+..++|||.|||+++|...|+.-|..||.|.++.|+. .|+++| .|.|.+.++|+.|+..|+|..++|+.|.|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4468999999999999999999999999999998843 578887 89999999999999999999999999999874
No 81
>KOG0116|consensus
Probab=98.51 E-value=2.6e-07 Score=89.27 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=67.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
.+|||.|||++++..+|.++|.+||.|....|..-...+++.+||||+|.+.++++.|+.+ +-..++|+++.|.--++
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 5799999999999999999999999999887765433355559999999999999999986 67899999999986543
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.29 E-value=6.1e-06 Score=64.19 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=69.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHhc--CCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC----CeeEEE
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSR--FGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID----DRRIHA 263 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~--fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~----gr~I~V 263 (309)
+||-|.|+|...|.+.|.+++.. .|....+.++.|..++-+.|||||.|.+.+.|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999988843 367778889999999999999999999999999999999997775 566788
Q ss_pred EeecC
Q psy15676 264 RGEEW 268 (309)
Q Consensus 264 ~~a~~ 268 (309)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 83
>KOG4454|consensus
Probab=98.25 E-value=4.8e-07 Score=79.05 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=72.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+...||||+|+...++++-|.++|-+-|+|..+.|..++. +..+ ||||.|.++.++.-|+..|||..+.+..+.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3458999999999999999999999999999999988775 5566 9999999999999999999999999999999876
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
...
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 543
No 84
>KOG4660|consensus
Probab=98.21 E-value=9e-07 Score=86.40 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=64.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEE
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~ 262 (309)
+..+|+|-|||.++++++|..+|+.||+|..++. |-..+|..||+|.+..+|+.|++.|++..|.|++|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 5679999999999999999999999999988665 445679999999999999999999999999999988
No 85
>KOG0106|consensus
Probab=98.16 E-value=1.8e-06 Score=76.30 Aligned_cols=71 Identities=21% Similarity=0.426 Sum_probs=65.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
..+|||+||+.+.+.+|..+|..||.+..+.+. .||+||.|.+..+|..|+..+||..+.|-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 368999999999999999999999999988773 37999999999999999999999999998899999884
No 86
>KOG0120|consensus
Probab=98.15 E-value=2e-06 Score=84.38 Aligned_cols=80 Identities=21% Similarity=0.471 Sum_probs=76.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
....+||++||...++.++.++...||.+....++.|..+|.++||||.+|.+......|+..+||..++++.++|+.|-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999875
No 87
>KOG1190|consensus
Probab=97.98 E-value=2.5e-05 Score=73.95 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=68.6
Q ss_pred CcEEEecCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 189 ENVLFVCKLNPV-TSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 189 ~~~lfV~nL~~~-~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+..|.|.||+.. +|.+.|..+|+-||.|.+++|..+++ --|.|+|.+...|+.|+..|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 578999999865 99999999999999999999998764 479999999999999999999999999999999997
No 88
>KOG0147|consensus
Probab=97.86 E-value=6.8e-06 Score=80.24 Aligned_cols=79 Identities=25% Similarity=0.276 Sum_probs=73.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
..|+|+..|+-.++..+|..+|+.+|.|..|.++.|+.++.++|.|||+|.+.+++..|+ .|.|..+.|-+|.|+.+..
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 368888888888999999999999999999999999999999999999999999999999 6899999999999997753
No 89
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.85 E-value=7.4e-05 Score=56.10 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=47.5
Q ss_pred cEEEecCCCCCCCHHH----HHHHHhcCC-ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 190 NVLFVCKLNPVTSDDD----LEIIFSRFG-KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~----L~~~F~~fG-~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..|||.|||-+..... |+.++..+| .|.++ +.|.|++.|.+.+.|..|.+.|+|-.+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999888665 566776776 44443 23689999999999999999999999999999999
Q ss_pred eec
Q psy15676 265 GEE 267 (309)
Q Consensus 265 ~a~ 267 (309)
|+.
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 984
No 90
>KOG1995|consensus
Probab=97.78 E-value=2.7e-05 Score=72.70 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=74.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCcee--------EEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCe
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVN--------CCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDR 259 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~--------~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr 259 (309)
...++||.+||..++++++..+|.++|.|. .+.+-+++.|+.++|-|.|+|.+...|+.|+.-+++..+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 457899999999999999999999999884 356778889999999999999999999999999999999999
Q ss_pred eEEEEeecC
Q psy15676 260 RIHARGEEW 268 (309)
Q Consensus 260 ~I~V~~a~~ 268 (309)
.|+|.+|..
T Consensus 145 ~ikvs~a~~ 153 (351)
T KOG1995|consen 145 TIKVSLAER 153 (351)
T ss_pred Cchhhhhhh
Confidence 999998864
No 91
>KOG4211|consensus
Probab=97.69 E-value=0.00013 Score=70.72 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=62.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+....|-+.+||+++|+++|..+|+.++ |.++.+ .+.+|+..|-|||+|.+.+++++|++. +-..+..+-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 3456778899999999999999999875 566544 445799999999999999999999975 777777888887555
No 92
>KOG4210|consensus
Probab=97.68 E-value=2.2e-05 Score=72.78 Aligned_cols=80 Identities=25% Similarity=0.359 Sum_probs=72.8
Q ss_pred CcEEE-ecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 189 ENVLF-VCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 189 ~~~lf-V~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
..++| |+||++.++.++|...|..+|.|..+++..+..+|..+||||+.|.+...+..++.. +...++++++.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 999999999999999999999999999999999999999999999999999999876 7899999999999886
Q ss_pred Cc
Q psy15676 268 WN 269 (309)
Q Consensus 268 ~~ 269 (309)
..
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 53
No 93
>KOG1457|consensus
Probab=97.66 E-value=4.9e-05 Score=66.87 Aligned_cols=66 Identities=21% Similarity=0.469 Sum_probs=54.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID 257 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~ 257 (309)
...||||.||.+++++++|+.+|+.|......+|- .+ ..-+.||+.|++.+.|..|+..|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~---~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-AR---GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cC---CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 34699999999999999999999999776655552 22 23468999999999999999999997653
No 94
>KOG4206|consensus
Probab=97.62 E-value=0.00023 Score=62.79 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=68.9
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC-CeeEEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID-DRRIHA 263 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~-gr~I~V 263 (309)
..+|..++|+.|||..++.+.|..+|.+|+....++++... .+.|||+|.+...+..|...++|..|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 36788999999999999999999999999999999987654 479999999999999999999998887 788888
Q ss_pred Eeec
Q psy15676 264 RGEE 267 (309)
Q Consensus 264 ~~a~ 267 (309)
.+|.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 8764
No 95
>KOG2314|consensus
Probab=97.58 E-value=0.0004 Score=68.37 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=64.1
Q ss_pred CCcEEEecCCCCCCCH------HHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC-Cee
Q psy15676 188 PENVLFVCKLNPVTSD------DDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID-DRR 260 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te------~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~-gr~ 260 (309)
-...|+|.|.|-.-.. .-|..+|+++|.+.+..++.+..+| .+||.|++|.+..+|+.|++.+||+.++ ++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3478999999865432 2367889999999999999888755 9999999999999999999999999887 566
Q ss_pred EEEEe
Q psy15676 261 IHARG 265 (309)
Q Consensus 261 I~V~~ 265 (309)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66653
No 96
>KOG4211|consensus
Probab=97.51 E-value=0.00024 Score=68.92 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=65.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeE-EEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNC-CEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~-v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+..+|-+.+||+.||++||.++|+..-.+.. +.++.++ .+++.|-|||.|.+.+.|++|+.. +...|+-+-|.|-.|
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4568889999999999999999988765554 5566666 478999999999999999999976 777888888888766
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 97
>KOG3152|consensus
Probab=97.50 E-value=0.00011 Score=65.82 Aligned_cols=73 Identities=18% Similarity=0.339 Sum_probs=61.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCC--------CCcccE----EEEEecCHHHHHHHHHHcCCce
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVT--------GDSLQY----AFVEFDNPKSCEDAYLKMDNVL 255 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~t--------g~skG~----aFV~F~~~~~a~~Al~~l~g~~ 255 (309)
....||++++|+.....-|+.+|++||.|-.|.+.....+ |.+.++ |.|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999988665544 333332 5799999999999999999999
Q ss_pred eCCee
Q psy15676 256 IDDRR 260 (309)
Q Consensus 256 i~gr~ 260 (309)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.47 E-value=0.00059 Score=63.42 Aligned_cols=77 Identities=21% Similarity=0.441 Sum_probs=61.0
Q ss_pred CcEEEecCCCCCCCHHH----H--HHHHhcCCceeEEEEeeeCCCC---Cccc-E-EEEEecCHHHHHHHHHHcCCceeC
Q psy15676 189 ENVLFVCKLNPVTSDDD----L--EIIFSRFGKVNCCEVIRDKVTG---DSLQ-Y-AFVEFDNPKSCEDAYLKMDNVLID 257 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~----L--~~~F~~fG~I~~v~i~~d~~tg---~skG-~-aFV~F~~~~~a~~Al~~l~g~~i~ 257 (309)
.+-+||-+||+.+..++ | .++|++||.|..+.+ ++.|. ...+ + .||+|.+.++|..|+...+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv--Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV--NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEe--cccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 46789999999877666 2 578999999988766 33331 1112 3 299999999999999999999999
Q ss_pred CeeEEEEeec
Q psy15676 258 DRRIHARGEE 267 (309)
Q Consensus 258 gr~I~V~~a~ 267 (309)
|+-|+..|-.
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999998854
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.44 E-value=0.00023 Score=56.31 Aligned_cols=71 Identities=24% Similarity=0.391 Sum_probs=43.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC-----ceeCCeeEEEE
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN-----VLIDDRRIHAR 264 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g-----~~i~gr~I~V~ 264 (309)
+.|++.+++..++-++|+..|++||.|..|.+... -..|||-|.+.++|+.|+..+.. ..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57889999999999999999999999998877542 23789999999999998876543 45666666555
Q ss_pred ee
Q psy15676 265 GE 266 (309)
Q Consensus 265 ~a 266 (309)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 43
No 100
>KOG4849|consensus
Probab=97.43 E-value=0.00018 Score=67.03 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=67.4
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFG--KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG--~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
...+|||||-+.+|++||.+.....| .+..+++..++.+|.|+|||+|...+..++++.++.|.-..|.|..-.|--.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35899999999999999999887766 5567778888889999999999999999999999999999999977666543
No 101
>KOG1190|consensus
Probab=97.24 E-value=0.00069 Score=64.44 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=66.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCe-eEEEEe
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDR-RIHARG 265 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr-~I~V~~ 265 (309)
||..++..+|+|+++++++|...|..-|...+..... ++.+.+|++.+.+.+.|-.|+..++++.+++. -++|+|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 6778999999999999999999998877665544322 44556999999999999999999999998865 889999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
+++.
T Consensus 488 Sks~ 491 (492)
T KOG1190|consen 488 SKST 491 (492)
T ss_pred eccc
Confidence 9863
No 102
>KOG0129|consensus
Probab=97.18 E-value=0.00092 Score=65.29 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=60.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHh-cCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHH
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFS-RFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK 250 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~-~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~ 250 (309)
-+|.+|||||+||.-++.++|..+|. -||.|..+.|-.|++-+.++|-|=|+|.+..+-.+|+.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 36778999999999999999999997 899999999999988899999999999999999999974
No 103
>KOG0106|consensus
Probab=97.17 E-value=0.00026 Score=62.63 Aligned_cols=72 Identities=28% Similarity=0.368 Sum_probs=62.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
..+.++|.|++-.+...+|..+|.++|.+....+ ..+++||.|.+..++..|+..++|..+.|+.|.+.++.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 3578889999999999999999999999844333 45799999999999999999999999999999995443
No 104
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.15 E-value=0.0015 Score=54.25 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=53.4
Q ss_pred CCCCCcEEEecCCCC------CCCH---HHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCce
Q psy15676 185 AAPPENVLFVCKLNP------VTSD---DDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVL 255 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~------~~te---~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~ 255 (309)
.+||..||.|.=+.+ ...+ .+|...|..||.+.-++++.+ .-+|+|.+-.+|.+|+. ++|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 368889998876662 2222 267788999999988887643 46999999999999996 79999
Q ss_pred eCCeeEEEEeecCc
Q psy15676 256 IDDRRIHARGEEWN 269 (309)
Q Consensus 256 i~gr~I~V~~a~~~ 269 (309)
++|+.|+|..-.++
T Consensus 94 v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 94 VNGRTLKIRLKTPD 107 (146)
T ss_dssp ETTEEEEEEE----
T ss_pred ECCEEEEEEeCCcc
Confidence 99999999976654
No 105
>KOG1548|consensus
Probab=96.97 E-value=0.0091 Score=55.88 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=62.8
Q ss_pred CCCCcEEEecCCCC----CCC-------HHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc
Q psy15676 186 APPENVLFVCKLNP----VTS-------DDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV 254 (309)
Q Consensus 186 ~~~~~~lfV~nL~~----~~t-------e~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~ 254 (309)
....++|.+.|+=- ..+ .++|.+-.++||.|.++.+. + ..+.|.+-|.|.+.+.|..|++.|+|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 34467888998721 233 34566778899999998764 3 246799999999999999999999999
Q ss_pred eeCCeeEEEEeecC
Q psy15676 255 LIDDRRIHARGEEW 268 (309)
Q Consensus 255 ~i~gr~I~V~~a~~ 268 (309)
.++||.|+.+....
T Consensus 338 ~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 338 WFDGRQLTASIWDG 351 (382)
T ss_pred eecceEEEEEEeCC
Confidence 99999999987754
No 106
>KOG0120|consensus
Probab=96.88 E-value=0.0028 Score=62.64 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=57.1
Q ss_pred HHHHHHhcCCceeEEEEeeeCC---CCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCchhhcc
Q psy15676 205 DLEIIFSRFGKVNCCEVIRDKV---TGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWNMWKRR 274 (309)
Q Consensus 205 ~L~~~F~~fG~I~~v~i~~d~~---tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~~~~~r 274 (309)
+++.-+++||.|.+|.+.++.. ..-+.|-.||+|.+.++++.|.+.|+|..++|+.+...|.....|..+
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~~r 497 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYHAR 497 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhhcc
Confidence 3455677899999999988722 233457789999999999999999999999999999999876666544
No 107
>KOG1456|consensus
Probab=96.79 E-value=0.0079 Score=56.81 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=69.9
Q ss_pred CCCCCCcEEEecCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEE
Q psy15676 184 DAAPPENVLFVCKLNPV-TSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262 (309)
Q Consensus 184 ~~~~~~~~lfV~nL~~~-~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~ 262 (309)
....+++.+.|.+|.-. .+-+-|..+|..||.|..+++++.+ .|-|.|++.+..+++.|+..||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34567899999999876 5667799999999999999998765 37899999999999999999999999999999
Q ss_pred EEeec
Q psy15676 263 ARGEE 267 (309)
Q Consensus 263 V~~a~ 267 (309)
|.+++
T Consensus 357 v~~Sk 361 (494)
T KOG1456|consen 357 VCVSK 361 (494)
T ss_pred Eeecc
Confidence 99886
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.65 E-value=0.0049 Score=42.45 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=41.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHH
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al 248 (309)
+.|-|.+.+++..+. +..+|..||.|..+.+. ...-+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 467788888876655 55588899999998774 23358999999999999985
No 109
>KOG2193|consensus
Probab=96.62 E-value=0.002 Score=61.58 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=60.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC-ceeCCeeEEEEeecC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN-VLIDDRRIHARGEEW 268 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g-~~i~gr~I~V~~a~~ 268 (309)
+.+|++||++.++..+|..+|+..-.-.+-.++. ..|||||.+.+...|.+|++.++| ..+.|+++.|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999996541111111111 238999999999999999999999 588899999998876
Q ss_pred chhhcc
Q psy15676 269 NMWKRR 274 (309)
Q Consensus 269 ~~~~~r 274 (309)
+..+.+
T Consensus 76 kkqrsr 81 (584)
T KOG2193|consen 76 KKQRSR 81 (584)
T ss_pred HHHHhh
Confidence 554443
No 110
>KOG4307|consensus
Probab=96.59 E-value=0.0065 Score=61.42 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=64.2
Q ss_pred EEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 191 VLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 191 ~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.|-+.|+|++++-+|+..+|.-|-.+-.-.+++-.+.|...|-|.|.|++.+.|..|...+++..|.++.+.+.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 778899999999999999999997664333333345699999999999999999999999999999999988764
No 111
>KOG0128|consensus
Probab=96.55 E-value=0.00044 Score=70.96 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=70.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
..+||+|.|+..|.+.|+.+|+.+|.+.+..++..+ .|+++|-|||.|.+..++..+...+++..+.-+.+.|+.+.+
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 589999999999999999999999999999887776 599999999999999999999988888888888888887765
No 112
>KOG1855|consensus
Probab=96.45 E-value=0.0031 Score=60.40 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=56.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeee---CCC--CCc--------ccEEEEEecCHHHHHHHHHHcCC
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRD---KVT--GDS--------LQYAFVEFDNPKSCEDAYLKMDN 253 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d---~~t--g~s--------kG~aFV~F~~~~~a~~Al~~l~g 253 (309)
-+.++|.+.|||.+-.-+.|..+|+.+|.|..|+|+.. +.. |.+ +-+|||+|...+.|.+|-+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999888999999999999999999876 322 222 35799999999999999987754
No 113
>KOG1456|consensus
Probab=96.24 E-value=0.024 Score=53.69 Aligned_cols=81 Identities=25% Similarity=0.247 Sum_probs=65.4
Q ss_pred CCCCCCCcEEEecCCC--CCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC--
Q psy15676 183 ADAAPPENVLFVCKLN--PVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD-- 258 (309)
Q Consensus 183 ~~~~~~~~~lfV~nL~--~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g-- 258 (309)
.++..++..|.+.=|+ +.+|.+-|..+....|.|.++.|.+- +|. .|.|+|++.+.|++|...|||..|..
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccc
Confidence 3445566777766555 46899999999999999999988653 443 79999999999999999999987753
Q ss_pred eeEEEEeecC
Q psy15676 259 RRIHARGEEW 268 (309)
Q Consensus 259 r~I~V~~a~~ 268 (309)
..|+|+||++
T Consensus 189 CTLKIeyAkP 198 (494)
T KOG1456|consen 189 CTLKIEYAKP 198 (494)
T ss_pred eeEEEEecCc
Confidence 6789999986
No 114
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.23 E-value=0.023 Score=44.43 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=50.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEE-EeeeC------CCCCcccEEEEEecCHHHHHHHHHHcCCceeCCe-e
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCE-VIRDK------VTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDR-R 260 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~-i~~d~------~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr-~ 260 (309)
...|.|-+.|+. ....+...|++||.|.+.. +..+. .......+-.|.|.+..+|.+||.. ||..++|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456777799888 5566788899999997664 11110 0012335889999999999999975 99999885 4
Q ss_pred EEEEeec
Q psy15676 261 IHARGEE 267 (309)
Q Consensus 261 I~V~~a~ 267 (309)
+-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577764
No 115
>KOG0112|consensus
Probab=96.16 E-value=0.0062 Score=63.12 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=66.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC--eeEEEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD--RRIHAR 264 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g--r~I~V~ 264 (309)
.+.+.+|+++|.+++....|...|..||.|..|.+- +..-||+|.|++...++.|+..|-|..++| +++.|+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 456789999999999999999999999999887652 234699999999999999999999999985 779999
Q ss_pred eecC
Q psy15676 265 GEEW 268 (309)
Q Consensus 265 ~a~~ 268 (309)
|+..
T Consensus 527 la~~ 530 (975)
T KOG0112|consen 527 LASP 530 (975)
T ss_pred cccC
Confidence 9874
No 116
>KOG0105|consensus
Probab=96.15 E-value=0.017 Score=49.70 Aligned_cols=63 Identities=27% Similarity=0.274 Sum_probs=56.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID 257 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~ 257 (309)
+...+.|++||++.+.++|+.++..-|.|....+.+| |++.|+|...++++-|+..|+...+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 4568999999999999999999999999999888765 58999999999999999998876554
No 117
>KOG0129|consensus
Probab=96.10 E-value=0.011 Score=57.88 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=45.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCC---CCCccc---EEEEEecCHHHHHHHHHH
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKV---TGDSLQ---YAFVEFDNPKSCEDAYLK 250 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~---tg~skG---~aFV~F~~~~~a~~Al~~ 250 (309)
.+.||||+||++++|+.|...|..||.+. +....... ---++| |+|+.|+++.++..-+.+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 57999999999999999999999999873 33332110 012355 999999998887765544
No 118
>KOG1365|consensus
Probab=96.05 E-value=0.0078 Score=57.02 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=64.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCc-eeE--EEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGK-VNC--CEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~-I~~--v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
...|-+.+||+..+.++|..+|+.|.. |.. +.++.+. .|+..|-|||+|.+.++|..|....+.....++-|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457889999999999999999988863 333 6777765 599999999999999999999988888777788888765
Q ss_pred ec
Q psy15676 266 EE 267 (309)
Q Consensus 266 a~ 267 (309)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 53
No 119
>KOG2416|consensus
Probab=95.89 E-value=0.0086 Score=59.60 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=62.4
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhc-CCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee---CCee
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSR-FGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI---DDRR 260 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~-fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i---~gr~ 260 (309)
-..+.+.|||.||-.-+|..+|+.++++ .|.|... ..|+ -+..|||.|.+.+.|.....+|+|..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4566789999999999999999999984 5555554 2233 456899999999999999999999765 5688
Q ss_pred EEEEeec
Q psy15676 261 IHARGEE 267 (309)
Q Consensus 261 I~V~~a~ 267 (309)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888875
No 120
>KOG4307|consensus
Probab=95.85 E-value=0.013 Score=59.39 Aligned_cols=81 Identities=21% Similarity=0.081 Sum_probs=65.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeE-EEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNC-CEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~-v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
.+.+..|||-.||..+++.++..+|...-.|++ |.+.+.+ +++-++-|||.|...+++..|+..-..+.++.+.|.|+
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 344679999999999999999999987766665 6666655 68889999999999887777776556677888889998
Q ss_pred eec
Q psy15676 265 GEE 267 (309)
Q Consensus 265 ~a~ 267 (309)
-..
T Consensus 510 si~ 512 (944)
T KOG4307|consen 510 SIA 512 (944)
T ss_pred chh
Confidence 543
No 121
>KOG2202|consensus
Probab=95.77 E-value=0.0049 Score=55.49 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=51.4
Q ss_pred HHHHHHHh-cCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 204 DDLEIIFS-RFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 204 ~~L~~~F~-~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+++...|+ +||.|.++.+..+. .-...|-+||.|...++|++|+..|||-.+.|++|+..++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34445555 89999988766543 24567889999999999999999999999999999998875
No 122
>KOG1996|consensus
Probab=95.32 E-value=0.052 Score=49.91 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCceeEEEEeeeCCCCCcc-cEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCchh
Q psy15676 204 DDLEIIFSRFGKVNCCEVIRDKVTGDSL-QYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWNMW 271 (309)
Q Consensus 204 ~~L~~~F~~fG~I~~v~i~~d~~tg~sk-G~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~~~ 271 (309)
++.....++||.|.+|.|...+..-... ---||+|...++|.+|+-.|||..|+|+.+...|..-..+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekf 369 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKF 369 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhh
Confidence 4567778999999999877665322222 2469999999999999999999999999999888754444
No 123
>KOG0115|consensus
Probab=95.24 E-value=0.021 Score=51.49 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=60.5
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcC--C--ceeCCeeEEEEe
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD--N--VLIDDRRIHARG 265 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~--g--~~i~gr~I~V~~ 265 (309)
..|||.||+..++.+.|...|+.||+|....++.|- -+++.+-++|.|...-.+.+|+..+. | ....+++.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 789999999999999999999999999887666664 47888899999999999999887763 2 334455555543
No 124
>KOG0128|consensus
Probab=95.12 E-value=0.0015 Score=67.14 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=55.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN 253 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g 253 (309)
.++||+||++.+.+.+|...|+.+|.+..+.+.....+++.+|+||+.|...+++.+|+....+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~ 731 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS 731 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh
Confidence 5899999999999999999999999998887765556789999999999999999998864433
No 125
>KOG4676|consensus
Probab=94.92 E-value=0.052 Score=51.72 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=58.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCC---CCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKV---TGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~---tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
...|-|.||.+++|.+++..+|+..|.|..+.+..+.. .....-.|||.|.+...+..|-. |.++.+-|+-|.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 34899999999999999999999999999988765432 12345689999999998888764 67766666666554
No 126
>KOG1365|consensus
Probab=94.61 E-value=0.1 Score=49.70 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=47.9
Q ss_pred EEEecCCCCCCCHHHHHHHHhcC----CceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHH
Q psy15676 191 VLFVCKLNPVTSDDDLEIIFSRF----GKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK 250 (309)
Q Consensus 191 ~lfV~nL~~~~te~~L~~~F~~f----G~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~ 250 (309)
.|-..+||+++++.++..+|.+- |....+.++..+ .|+..|-|||.|..+++|+.||..
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH
Confidence 55677999999999999999743 234556666554 588999999999999999999975
No 127
>KOG0112|consensus
Probab=94.47 E-value=0.01 Score=61.54 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCCCCCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCe
Q psy15676 180 LPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDR 259 (309)
Q Consensus 180 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr 259 (309)
+...+....+.|||+|||+..+++.+|+..|..+|.+..+.|-..+ -+...-||||.|.+...+-.|+..+.+..|...
T Consensus 363 v~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 363 VLKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred cccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccC
Confidence 3344445567899999999999999999999999999999875543 234456999999999999999999999887755
Q ss_pred eEEEEee
Q psy15676 260 RIHARGE 266 (309)
Q Consensus 260 ~I~V~~a 266 (309)
.+.+.+.
T Consensus 442 ~~r~glG 448 (975)
T KOG0112|consen 442 THRIGLG 448 (975)
T ss_pred ccccccc
Confidence 5555554
No 128
>KOG2068|consensus
Probab=94.13 E-value=0.042 Score=51.39 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=61.0
Q ss_pred cEEEecCCCCCCCHHHH---HHHHhcCCceeEEEEeeeCC--CCC-cccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 190 NVLFVCKLNPVTSDDDL---EIIFSRFGKVNCCEVIRDKV--TGD-SLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L---~~~F~~fG~I~~v~i~~d~~--tg~-skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
+-+||-+|++....+.+ .+.|++||.|..+.+-.+.- .+. .-.-++|+|...++|..||...+|...+|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 57889999988765554 35799999999988876552 111 1234799999999999999999999999999777
Q ss_pred EeecC
Q psy15676 264 RGEEW 268 (309)
Q Consensus 264 ~~a~~ 268 (309)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 76654
No 129
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.62 E-value=0.32 Score=40.41 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=54.3
Q ss_pred CCCCcEEEecCCCCCCC-HHHHH---HHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeE
Q psy15676 186 APPENVLFVCKLNPVTS-DDDLE---IIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~t-e~~L~---~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I 261 (309)
.||=.||.|.=|..+.. .+||+ ..++.||+|.++... | +..|.|.|.+..+|-.|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 46667888886665543 34444 446899999998763 3 35799999999999999988765 5667777
Q ss_pred EEEeec
Q psy15676 262 HARGEE 267 (309)
Q Consensus 262 ~V~~a~ 267 (309)
.+.+-+
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 777654
No 130
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.49 E-value=0.26 Score=37.17 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=40.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD 252 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~ 252 (309)
....||+ .|......||..+|+.||.|. |..+.| ..|||...+.+.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3455665 999999999999999999983 555544 379999999999998888765
No 131
>KOG2253|consensus
Probab=92.53 E-value=0.083 Score=53.43 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=64.1
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeE
Q psy15676 182 EADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261 (309)
Q Consensus 182 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I 261 (309)
.....++..++||+|+...+..+-+..+...+|.|.++.... |||..|........|+..++...++|..+
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 334467788999999999999999999999999987765432 99999999999999999999999999888
Q ss_pred EEEe
Q psy15676 262 HARG 265 (309)
Q Consensus 262 ~V~~ 265 (309)
.+..
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 7765
No 132
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.46 E-value=0.72 Score=32.81 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=43.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcC---CceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRF---GKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~f---G~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l 251 (309)
..|+|.|+. +.+.+++..+|..| .....+.++-|. .|-|.|.+...|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 578999985 46778899999888 234578888774 4789999999999999754
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.33 E-value=0.26 Score=42.51 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=49.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhc-CCce---eEEEEeeeCCCCC--cccEEEEEecCHHHHHHHHHHcCCceeCC---
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSR-FGKV---NCCEVIRDKVTGD--SLQYAFVEFDNPKSCEDAYLKMDNVLIDD--- 258 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~-fG~I---~~v~i~~d~~tg~--skG~aFV~F~~~~~a~~Al~~l~g~~i~g--- 258 (309)
....|.|++||++.|++++...++. ++.- ..+.-.....+.. ...-|||.|.+.+++..-...++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999998886665 5544 2332122221111 23458999999999999999999976642
Q ss_pred --eeEEEEeecC
Q psy15676 259 --RRIHARGEEW 268 (309)
Q Consensus 259 --r~I~V~~a~~ 268 (309)
.+..|.+|-.
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3446677754
No 134
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=91.26 E-value=0.12 Score=44.04 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.4
Q ss_pred cccccCCccccceEeecCCCCCC
Q psy15676 98 VFKRKNDIRITHAVILEDPYEDL 120 (309)
Q Consensus 98 ~~rp~~~iri~h~~il~dPf~~p 120 (309)
.++|+.+|+|.++.|++|||+||
T Consensus 144 ~~~P~~~i~I~~~~i~~~pf~~~ 166 (166)
T cd01921 144 DGRPLKDIRIKHTHILDDPFPDP 166 (166)
T ss_pred CCCCCCCeEEEEEEEECCCCCCC
Confidence 37999999999999999999986
No 135
>KOG2135|consensus
Probab=91.14 E-value=0.16 Score=49.55 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=56.8
Q ss_pred cEEEecCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 190 NVLFVCKLNPV-TSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 190 ~~lfV~nL~~~-~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
+.|-+...++. -+-++|...|.+||.|..|.+-.. --.|.|+|.+...|-.|+. ..+..|+|+.|+|-|-..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34444444554 346789999999999999987443 3468999999999988885 699999999999998775
No 136
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.84 E-value=2.3 Score=33.88 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=51.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcC-CceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC---eeEEEEe
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRF-GKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD---RRIHARG 265 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~f-G~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g---r~I~V~~ 265 (309)
..+.+...|..++.++|..+.+.+ ..|..++|++|. ..++-.+.+.|.+..+|..-+..+||..++. -.++|-|
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVF 91 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEE
Confidence 344454555556666676555555 456778888864 2355678999999999999999999987764 3345444
Q ss_pred e
Q psy15676 266 E 266 (309)
Q Consensus 266 a 266 (309)
-
T Consensus 92 V 92 (110)
T PF07576_consen 92 V 92 (110)
T ss_pred E
Confidence 3
No 137
>KOG4210|consensus
Probab=90.49 E-value=0.11 Score=48.30 Aligned_cols=80 Identities=13% Similarity=0.009 Sum_probs=66.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
..+++|++++...+.+.+...+|..+|....+.+........++|++++.|...+.+..|+........+++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46799999999999999889999999988888777777788999999999999999999997544356667666665554
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.55 E-value=1.2 Score=38.82 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=44.5
Q ss_pred CHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcC--CceeCCeeEEEEeecC
Q psy15676 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD--NVLIDDRRIHARGEEW 268 (309)
Q Consensus 202 te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~--g~~i~gr~I~V~~a~~ 268 (309)
....|+.+|..|+.+.....+.. -+-..|.|.+.++|..|...++ +..+.|..+++.|++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34679999999998877766542 3457899999999999999999 9999999999999863
No 139
>KOG2318|consensus
Probab=89.15 E-value=3.3 Score=41.70 Aligned_cols=80 Identities=21% Similarity=0.362 Sum_probs=59.9
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHHhcC----CceeEEEEeeeC----------CCCC---------------------
Q psy15676 186 APPENVLFVCKLNPV-TSDDDLEIIFSRF----GKVNCCEVIRDK----------VTGD--------------------- 229 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~-~te~~L~~~F~~f----G~I~~v~i~~d~----------~tg~--------------------- 229 (309)
+.+.++|-|+||.++ +...+|..+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999997 8889999999766 688888874432 1121
Q ss_pred ---------------c-ccEEEEEecCHHHHHHHHHHcCCceeCC--eeEEEEe
Q psy15676 230 ---------------S-LQYAFVEFDNPKSCEDAYLKMDNVLIDD--RRIHARG 265 (309)
Q Consensus 230 ---------------s-kG~aFV~F~~~~~a~~Al~~l~g~~i~g--r~I~V~~ 265 (309)
- .=||.|+|.+...|.+.+..++|..+.. ..+-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 1278999999999999999999988864 4444443
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.52 E-value=2.6 Score=30.75 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=38.0
Q ss_pred EEEec-CCCCCCCHHHHHHHHhcCCce-----eEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 191 VLFVC-KLNPVTSDDDLEIIFSRFGKV-----NCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 191 ~lfV~-nL~~~~te~~L~~~F~~fG~I-----~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
++||. +=-..++..+|..++...+.+ -.+.+.. .|+||+-.. +.+..++..|++..+.|+++.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 223457788888888766544 4555532 388998875 57888999999999999999998
Q ss_pred ee
Q psy15676 265 GE 266 (309)
Q Consensus 265 ~a 266 (309)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 141
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.57 E-value=2.5 Score=30.45 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 200 VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 200 ~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
.++-++++..+..|+-. .|..|+ || | ||.|.+..+|++|+...+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-tG----f-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-TG----F-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-CE----E-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999642 333343 33 3 89999999999999999999888877654
No 142
>KOG4660|consensus
Probab=87.51 E-value=0.84 Score=45.51 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=56.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHH-hcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee---C-CeeEEE
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIF-SRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI---D-DRRIHA 263 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F-~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i---~-gr~I~V 263 (309)
.+++-|.|++...|..-|...- ...|.-..+.++.|-.+.-+.|||||.|.+.+++..+++++||... + .+.+.+
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 3556666666555544433332 3456667778888887778899999999999999999999999544 3 345577
Q ss_pred EeecC
Q psy15676 264 RGEEW 268 (309)
Q Consensus 264 ~~a~~ 268 (309)
.||+.
T Consensus 468 tYArI 472 (549)
T KOG4660|consen 468 TYARI 472 (549)
T ss_pred ehhhh
Confidence 77754
No 143
>KOG2591|consensus
Probab=86.31 E-value=1.1 Score=44.92 Aligned_cols=69 Identities=17% Similarity=0.358 Sum_probs=54.4
Q ss_pred CcEEEecCCCCCCCHHHHHHHHh--cCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC--ceeCCeeEEEE
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFS--RFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN--VLIDDRRIHAR 264 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~--~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g--~~i~gr~I~V~ 264 (309)
-+.+.+.-+|.++-.++++.+|. .+-.+.+|.+-.+. -=||+|++..+|+.|++.|.. ..|.|++|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 36788999999999999999995 46778888876542 138999999999999987765 56667766443
No 144
>KOG4574|consensus
Probab=85.44 E-value=0.67 Score=48.38 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee--CCeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI--DDRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i--~gr~I~V 263 (309)
-|-..+.++.|.+-..+...|..+|+.||.+.++...++- -.|.|.|.+.++|-.|+.+++|..+ -|-+.+|
T Consensus 295 ~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V 368 (1007)
T KOG4574|consen 295 FPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRV 368 (1007)
T ss_pred ccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeE
Confidence 3444566677777788889999999999999998887764 3799999999999999999999644 5888999
Q ss_pred EeecC
Q psy15676 264 RGEEW 268 (309)
Q Consensus 264 ~~a~~ 268 (309)
.+|+.
T Consensus 369 ~~ak~ 373 (1007)
T KOG4574|consen 369 SFAKT 373 (1007)
T ss_pred Eeccc
Confidence 99974
No 145
>KOG0804|consensus
Probab=85.01 E-value=3.5 Score=40.31 Aligned_cols=69 Identities=12% Similarity=0.292 Sum_probs=57.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcC-CceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRF-GKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD 258 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~f-G~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g 258 (309)
++..|+|=.+|-..|..||..|...| -.|..+++++|.. .++=.+.+.|.+.++|..-+..+||..++.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37899999999999999999998765 4778999999642 223346899999999999999999987764
No 146
>KOG2891|consensus
Probab=84.30 E-value=1.6 Score=40.07 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=48.6
Q ss_pred CCcEEEecCCCC------------CCCHHHHHHHHhcCCceeEEEEeee-----CCCCCcc-----cEEE---------E
Q psy15676 188 PENVLFVCKLNP------------VTSDDDLEIIFSRFGKVNCCEVIRD-----KVTGDSL-----QYAF---------V 236 (309)
Q Consensus 188 ~~~~lfV~nL~~------------~~te~~L~~~F~~fG~I~~v~i~~d-----~~tg~sk-----G~aF---------V 236 (309)
.+.|||+.+||- -.+++-|+..|..||.|..+.|+.. ..||+.. ||+| |
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 345778877764 2457789999999999998877533 2345543 3333 3
Q ss_pred EecCHHHHHHHHHHcCCc----eeCCe----eEEEEeecCc
Q psy15676 237 EFDNPKSCEDAYLKMDNV----LIDDR----RIHARGEEWN 269 (309)
Q Consensus 237 ~F~~~~~a~~Al~~l~g~----~i~gr----~I~V~~a~~~ 269 (309)
.|........|+..+.|. .++|. .++|+|.++.
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 333333334455555553 33333 4677777664
No 147
>KOG4285|consensus
Probab=83.80 E-value=2.4 Score=39.40 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=47.7
Q ss_pred ecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCee-EEEEeec
Q psy15676 194 VCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR-IHARGEE 267 (309)
Q Consensus 194 V~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~-I~V~~a~ 267 (309)
|-+.++.-. .-+...|++||.|.+.... ..-.+-+|.|.+..+|.+||.. ||..|+|.. |-|.-+.
T Consensus 202 VfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 202 VFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred EeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 347776644 4467789999999775432 2224889999999999999975 999998754 3454443
No 148
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=79.44 E-value=8.7 Score=37.28 Aligned_cols=48 Identities=33% Similarity=0.480 Sum_probs=34.3
Q ss_pred hHHhHhcCCCCCCCCCCCcEEEecCCCCC-CCHHHHHHHHhcC----CceeEEEE
Q psy15676 172 TILEIVGDLPEADAAPPENVLFVCKLNPV-TSDDDLEIIFSRF----GKVNCCEV 221 (309)
Q Consensus 172 ~~~e~~~~~~~~~~~~~~~~lfV~nL~~~-~te~~L~~~F~~f----G~I~~v~i 221 (309)
.+.+..|..|.. +.+...|-|-||.++ +...+|..+|+.| |.+..+.|
T Consensus 131 EisE~ag~~pe~--G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i 183 (622)
T COG5638 131 EISEKAGAVPEE--GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI 183 (622)
T ss_pred hhhhhccCccCC--CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe
Confidence 344444555543 567788999999986 7888999999865 56666665
No 149
>KOG4483|consensus
Probab=78.97 E-value=15 Score=35.54 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=44.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCce-eEEEEeeeCCCCCcccEEEEEecCHHHHHHHHH
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKV-NCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I-~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~ 249 (309)
...|=|.+.|.....+||...|+.||.- -.|.++-|. .||..|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 3588899999999999999999999754 456666553 79999999999999995
No 150
>KOG4008|consensus
Probab=71.72 E-value=11 Score=34.06 Aligned_cols=117 Identities=22% Similarity=0.249 Sum_probs=62.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeee----------------CCCCCcccEEEEEe--cCHHHHHHHHH
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRD----------------KVTGDSLQYAFVEF--DNPKSCEDAYL 249 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d----------------~~tg~skG~aFV~F--~~~~~a~~Al~ 249 (309)
...++|+-|+|..+|++.|..+.++.|.+..+....- +.+-.+.-||.+.+ .+...|..|+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl~es~~~ar~sl~~p~~v~~~~~a~k~~~~ps~~~c~~alk 118 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGLHESDLSARTSLLMPSTVNEKRYAPKFVDAPSINNCWNALK 118 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheecccchhhhhCCchhhhhhccCCcccceeeccceeecchHHHHHhccC
Confidence 4568999999999999999999999886654332100 01112334554443 34455555554
Q ss_pred HcCCceeCCeeEEEEeec----CchhhccchHHHHH-------hhHHHHHhHHHHHhhhhccchhhh
Q psy15676 250 KMDNVLIDDRRIHARGEE----WNMWKRREEEEEKE-------EIDEKKEEEEKEDRAMIGDRMEDG 305 (309)
Q Consensus 250 ~l~g~~i~gr~I~V~~a~----~~~~~~r~~~~~~e-------~~~ekk~~e~k~d~~~~~~~~~~~ 305 (309)
..+...+....+..-.-. -+.+.+. .+.-++ ..+++.-+++++....-|.++||+
T Consensus 119 ~~~~v~~el~e~~s~i~~~tt~Y~~~fpd-pe~L~e~vDTyme~ydqk~aee~~~ak~~~~~pDEdG 184 (261)
T KOG4008|consen 119 KYSNVHAELFEWTSTIPSFTTFYNFYFPD-PEYLKEDVDTYMERYDQKEAEEEAKAKVEESVPDEDG 184 (261)
T ss_pred ccceeeeeccchhhcchhHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcCc
Confidence 433322222221111110 1222222 222222 344566666666677788888886
No 151
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=68.80 E-value=2.9 Score=35.26 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=19.3
Q ss_pred ccccCCccccceEeecCCCC
Q psy15676 99 FKRKNDIRITHAVILEDPYE 118 (309)
Q Consensus 99 ~rp~~~iri~h~~il~dPf~ 118 (309)
++|+.+|+|.+..|+.|||+
T Consensus 139 ~~P~~~i~I~~~~i~~dpf~ 158 (159)
T cd01923 139 DRPKEEIKIEDTSVFVDPFE 158 (159)
T ss_pred CCCCCCeEEEEeEEEeCCCC
Confidence 79999999999999999997
No 152
>KOG4410|consensus
Probab=57.02 E-value=34 Score=31.77 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=34.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCce-eEEEEeeeCCCCCcccEEEEEecCH
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKV-NCCEVIRDKVTGDSLQYAFVEFDNP 241 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I-~~v~i~~d~~tg~skG~aFV~F~~~ 241 (309)
.-||++||+.++.-.||+..+..-|.+ .++.+ ....|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 579999999999999999999877644 33333 12457799999654
No 153
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=54.62 E-value=6.7 Score=33.51 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.5
Q ss_pred ccccCCccccceEeecCCCCCC
Q psy15676 99 FKRKNDIRITHAVILEDPYEDL 120 (309)
Q Consensus 99 ~rp~~~iri~h~~il~dPf~~p 120 (309)
++|+.+|+|.+..|+.|||+|.
T Consensus 146 ~~P~~~i~I~~~~i~~~pf~~~ 167 (171)
T cd01925 146 ERPVYPPKITSVEVLENPFDDI 167 (171)
T ss_pred CCcCCCeEEEEEEEEcCCchhh
Confidence 6899999999999999999985
No 154
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=54.12 E-value=33 Score=32.00 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=61.8
Q ss_pred CCCCCCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCC-------CCCcccEEEEEecCHHHHHHHHH---
Q psy15676 180 LPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKV-------TGDSLQYAFVEFDNPKSCEDAYL--- 249 (309)
Q Consensus 180 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~-------tg~skG~aFV~F~~~~~a~~Al~--- 249 (309)
+|.++..--.+.|...|+..+++-..+...|-+||+|+++.++.+.. .........+.|-+.+.|..-+.
T Consensus 6 LPkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvL 85 (309)
T PF10567_consen 6 LPKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVL 85 (309)
T ss_pred cCCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHH
Confidence 45555444456788899999998888888899999999999987751 12234567888888877655442
Q ss_pred -HcCC--ceeCCeeEEEEeec
Q psy15676 250 -KMDN--VLIDDRRIHARGEE 267 (309)
Q Consensus 250 -~l~g--~~i~gr~I~V~~a~ 267 (309)
.+.. ..+....|.+.|..
T Consensus 86 QrLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 86 QRLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHHHHhcCCcceeEEEEE
Confidence 2222 45667778887764
No 155
>KOG4676|consensus
Probab=48.39 E-value=4.4 Score=39.01 Aligned_cols=63 Identities=14% Similarity=0.022 Sum_probs=51.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID 257 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~ 257 (309)
.+++|++|+..+-..++...|..+|.|....+. .|...-||.+.|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 578999999999999999999999999877663 34455678899998888888886 4665554
No 156
>KOG4454|consensus
Probab=47.28 E-value=4.5 Score=36.11 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=53.1
Q ss_pred cEEEecC----CCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc
Q psy15676 190 NVLFVCK----LNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV 254 (309)
Q Consensus 190 ~~lfV~n----L~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~ 254 (309)
.+++.|+ |...++++.+...|+.-|.+..+++..+.+ |+++-++|+.+....+.-.++....+.
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhccc
Confidence 5677787 888899999999999999999999988875 888999999998777777777665553
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=46.49 E-value=24 Score=30.51 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=43.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHH
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al 248 (309)
......+++++++..++...+...|..+|.+....+...........+.++.+.....+..+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 445678999999999999999999999999977766554433333444444444434443333
No 158
>KOG2193|consensus
Probab=43.34 E-value=1.9 Score=41.79 Aligned_cols=74 Identities=14% Similarity=0.287 Sum_probs=60.4
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEe-eeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI-RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~-~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.+.+-+.|+|+....+-|..+..+||.+.+|..+ .+.. ....-|+|.+.+.+..|+..++|..+.+..+.|.|-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 3568899999999999999999999999988653 2222 223347888999999999999999999988888774
No 159
>KOG4019|consensus
Probab=37.34 E-value=34 Score=29.70 Aligned_cols=74 Identities=15% Similarity=0.322 Sum_probs=51.3
Q ss_pred CcEEEecCCCCCCCHH-----HHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCe-eEE
Q psy15676 189 ENVLFVCKLNPVTSDD-----DLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDR-RIH 262 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~-----~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr-~I~ 262 (309)
..++++++++..+-.+ ....+|.+|.......+++ +.++.-|.|.+.+.|..|...+++..+.|. .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4578888888764322 2345566665443333332 345667899999999999999999999988 777
Q ss_pred EEeecC
Q psy15676 263 ARGEEW 268 (309)
Q Consensus 263 V~~a~~ 268 (309)
.-+++.
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 777774
No 160
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=33.36 E-value=53 Score=26.24 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecC-HHHHHHHH
Q psy15676 201 TSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDN-PKSCEDAY 248 (309)
Q Consensus 201 ~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~-~~~a~~Al 248 (309)
.+.+.|...|+.|..+. +..+.+.. ...|++.|.|.+ -.....|+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 35578999999998874 55666653 568999999975 34444444
No 161
>KOG3598|consensus
Probab=29.08 E-value=14 Score=41.32 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCcccchhhHHh--hhhhh------------hcc--cccccchhhHHHHH
Q psy15676 1 MDSNNNHAKCYI--WSVVL------------YGS--ETWTMRKKEEKYLE 34 (309)
Q Consensus 1 ~~~~~~~~~~~v--~p~~~------------Yg~--etw~~~~~~~~~l~ 34 (309)
|-+++-||.||+ +.||+ ||+ |-|.-+-+..+||+
T Consensus 1608 m~~nnelftTvlDML~vlingTLa~d~S~~s~Gs~eenkraYmnL~KKl~ 1657 (2220)
T KOG3598|consen 1608 MVRNNELFTTVLDMLHVLINGTLADDDSMDSYGSIEENKRAYMNLMKKLR 1657 (2220)
T ss_pred ccccchHHHHHHHHHHHHhhceecccccccCCCchhhhHHHHHHHHHHHH
Confidence 567888888875 34444 554 67777777777764
No 162
>KOG2295|consensus
Probab=29.06 E-value=9.4 Score=38.43 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=51.6
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCee
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR 260 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~ 260 (309)
.+++|+.|++++++-++|......+.-+..+.+..+..-....-+++|+|.--.....|+-+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 478999999999999999999988766555544332222233457789998777777788788886654433
No 163
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.11 E-value=1.4e+02 Score=21.64 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=39.3
Q ss_pred HHHHHHHhcCC-ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 204 DDLEIIFSRFG-KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 204 ~~L~~~F~~fG-~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.++.+-|...| .+.++.-+..+.++.+.-.-||+......... .++=..++|+++.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 35667777777 66777777777666666667787765433222 34446778888888754
No 164
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.06 E-value=1.5e+02 Score=21.06 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCceeEEEE
Q psy15676 204 DDLEIIFSRFGKVNCCEV 221 (309)
Q Consensus 204 ~~L~~~F~~fG~I~~v~i 221 (309)
.+|+.+|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999965544
No 165
>KOG3088|consensus
Probab=22.37 E-value=2.4e+02 Score=26.44 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=9.5
Q ss_pred eecCCCCCCCCCC
Q psy15676 112 ILEDPYEDLPELV 124 (309)
Q Consensus 112 il~dPf~~p~~l~ 124 (309)
-+.+||.||...+
T Consensus 13 ~~~NPF~dp~~~q 25 (313)
T KOG3088|consen 13 ELVNPFADPAVVQ 25 (313)
T ss_pred ccCCCCCCccccC
Confidence 4678888877665
No 166
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=21.91 E-value=85 Score=34.97 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=25.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRD 224 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d 224 (309)
..+++|-.+-..+..+.|+.+.+.++...++..-.|
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~D 107 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVD 107 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhhhhhhh
Confidence 356777777777888889988888887765544333
No 167
>PHA00432 internal virion protein A
Probab=20.38 E-value=28 Score=28.76 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=32.6
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHhCCccccccchHHHHHhhcCCcccccchhhhhhhhcccccccccee
Q psy15676 19 GSETWTMRKKEEKYLESFEMWLWRRMEKIKWSDKIRNEEVLRRGFSFLEDFEIVSGISKVCNKTHRYKLAVK 90 (309)
Q Consensus 19 g~etw~~~~~~~~~l~~~~~~~lR~i~~~~~~~~~~n~~i~~~~~~~~~~~~~~~~~~~~~~~r~~w~ghv~ 90 (309)
||.+|-++...+.||-.-+++=.|+-+. .|.|..... +.. ..+.-+.-.....+-|+|.|-+-
T Consensus 56 G~~vW~v~T~~v~~~~~~~~reF~k~~~-~~ld~ml~~--yp~------LwNyV~~~N~~hir~Lk~lGf~f 118 (137)
T PHA00432 56 GDQVWFVTSDQVWRLTKKEKREFRKLIM-EYRDMMLDQ--YPS------LWNYVWVGNKSHIRFLKSIGAVF 118 (137)
T ss_pred CCceEEEecHHhhhCChhhhHHHHHHHH-HHHHHHHHh--hhh------hheeeecCCHHHHHHHHHcCeee
Confidence 7888999999999974433333333221 111111110 000 02333333345567789999874
No 168
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=20.36 E-value=2.6e+02 Score=21.69 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCCHHHHHHHH-hcCCceeEEEEeeeC----CCCCcccEEEEEecCHHHHHH
Q psy15676 200 VTSDDDLEIIF-SRFGKVNCCEVIRDK----VTGDSLQYAFVEFDNPKSCED 246 (309)
Q Consensus 200 ~~te~~L~~~F-~~fG~I~~v~i~~d~----~tg~skG~aFV~F~~~~~a~~ 246 (309)
+.+..+|+.-+ ..|+.=.+.-++..- ..|.+.|||.| |.+.+.+.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 55667776655 345533333333332 33566777765 566565443
Done!