Query psy15676
Match_columns 309
No_of_seqs 401 out of 2098
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:42:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 9.9E-21 3.4E-25 147.1 11.6 83 186-268 16-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.8 6.6E-20 2.2E-24 145.3 12.1 84 186-269 3-86 (110)
3 2lkz_A RNA-binding protein 5; 99.8 6.3E-20 2.1E-24 141.7 7.5 80 189-268 9-94 (95)
4 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.9E-19 1.3E-23 133.7 11.3 83 187-269 4-86 (87)
5 2lxi_A RNA-binding protein 10; 99.8 6.1E-20 2.1E-24 140.3 6.5 81 189-269 1-83 (91)
6 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.1E-19 1.7E-23 132.5 10.9 82 186-267 4-85 (85)
7 2x1f_A MRNA 3'-END-processing 99.8 7.9E-19 2.7E-23 134.8 11.5 83 188-270 1-83 (96)
8 3md1_A Nuclear and cytoplasmic 99.8 9.7E-19 3.3E-23 130.3 11.5 80 190-269 2-81 (83)
9 2la6_A RNA-binding protein FUS 99.8 9.2E-19 3.1E-23 135.3 11.4 85 183-267 7-99 (99)
10 2cqc_A Arginine/serine-rich sp 99.8 1.1E-18 3.9E-23 133.2 11.7 84 185-268 11-94 (95)
11 1x5t_A Splicing factor 3B subu 99.8 7E-19 2.4E-23 134.8 9.6 85 187-271 3-88 (96)
12 1whw_A Hypothetical protein ri 99.8 1.5E-18 5.1E-23 133.8 11.5 86 186-271 5-90 (99)
13 2dgs_A DAZ-associated protein 99.8 1.5E-18 5.1E-23 133.9 11.4 85 186-271 7-91 (99)
14 2cq0_A Eukaryotic translation 99.8 1.5E-18 5.1E-23 134.9 11.3 86 186-271 12-97 (103)
15 2e5h_A Zinc finger CCHC-type a 99.8 1.7E-18 5.7E-23 132.2 11.3 82 186-267 13-94 (94)
16 1p27_B RNA-binding protein 8A; 99.8 1.1E-18 3.6E-23 136.3 10.4 85 186-270 20-104 (106)
17 2dnz_A Probable RNA-binding pr 99.8 1.4E-18 4.8E-23 132.9 10.9 84 187-270 3-86 (95)
18 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1E-18 3.5E-23 135.5 10.1 87 185-271 8-94 (102)
19 1oo0_B CG8781-PA, drosophila Y 99.8 1.3E-18 4.6E-23 136.8 10.5 85 186-270 23-107 (110)
20 1x4h_A RNA-binding protein 28; 99.8 2E-18 6.9E-23 135.7 11.5 87 185-271 11-103 (111)
21 3p5t_L Cleavage and polyadenyl 99.8 2.9E-19 9.8E-24 135.9 6.3 81 190-270 2-84 (90)
22 2dgo_A Cytotoxic granule-assoc 99.8 3.2E-18 1.1E-22 135.6 12.7 86 186-271 12-97 (115)
23 2do4_A Squamous cell carcinoma 99.8 3.1E-18 1.1E-22 132.4 12.0 84 186-270 14-97 (100)
24 1x5u_A Splicing factor 3B subu 99.8 2.3E-18 7.7E-23 134.2 11.1 85 186-270 12-96 (105)
25 1x5s_A Cold-inducible RNA-bind 99.8 1.9E-18 6.6E-23 133.9 10.4 86 185-270 8-93 (102)
26 2jrs_A RNA-binding protein 39; 99.8 2.3E-18 7.9E-23 135.7 10.9 84 186-269 23-106 (108)
27 2div_A TRNA selenocysteine ass 99.8 2.2E-18 7.7E-23 132.8 10.4 85 186-270 6-95 (99)
28 2dnm_A SRP46 splicing factor; 99.8 1.9E-18 6.4E-23 134.4 10.0 85 186-270 10-94 (103)
29 3s7r_A Heterogeneous nuclear r 99.8 4.8E-18 1.6E-22 127.9 11.8 80 186-266 8-87 (87)
30 3n9u_C Cleavage and polyadenyl 99.8 2.5E-18 8.7E-23 144.4 11.4 83 188-270 54-138 (156)
31 2cpz_A CUG triplet repeat RNA- 99.8 2.8E-18 9.7E-23 136.1 11.1 85 186-270 22-106 (115)
32 3ns6_A Eukaryotic translation 99.8 5E-19 1.7E-23 137.5 6.5 81 188-268 5-92 (100)
33 2cpf_A RNA binding motif prote 99.8 2.4E-18 8.3E-23 132.4 10.2 84 187-270 3-89 (98)
34 4f25_A Polyadenylate-binding p 99.8 2.9E-18 1E-22 136.4 10.9 80 189-270 5-84 (115)
35 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.2E-18 1.1E-22 144.6 11.6 86 186-271 69-154 (165)
36 3ulh_A THO complex subunit 4; 99.8 5.2E-18 1.8E-22 132.6 12.0 82 186-268 26-107 (107)
37 4a8x_A RNA-binding protein wit 99.8 3.3E-18 1.1E-22 128.7 10.2 82 188-269 3-85 (88)
38 2dng_A Eukaryotic translation 99.8 5.7E-18 2E-22 131.7 11.9 83 186-270 12-94 (103)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 5E-18 1.7E-22 132.2 11.5 85 186-271 12-99 (105)
40 1wi8_A EIF-4B, eukaryotic tran 99.8 4.1E-18 1.4E-22 132.8 10.9 85 186-272 12-97 (104)
41 3ex7_B RNA-binding protein 8A; 99.8 2.6E-18 8.8E-23 138.4 9.9 91 181-271 14-104 (126)
42 2cph_A RNA binding motif prote 99.8 4.3E-18 1.5E-22 133.0 10.9 85 186-270 12-98 (107)
43 3pgw_S U1-70K; protein-RNA com 99.8 1E-17 3.4E-22 162.6 15.8 83 186-268 99-181 (437)
44 2khc_A Testis-specific RNP-typ 99.7 4.6E-18 1.6E-22 135.4 10.5 81 187-267 38-118 (118)
45 3ucg_A Polyadenylate-binding p 99.7 5.6E-18 1.9E-22 127.8 10.4 80 189-269 6-85 (89)
46 2dgp_A Bruno-like 4, RNA bindi 99.7 3.6E-18 1.2E-22 133.3 9.5 85 186-270 10-97 (106)
47 2rs2_A Musashi-1, RNA-binding 99.7 4.9E-18 1.7E-22 133.9 10.1 85 185-270 21-105 (109)
48 2fy1_A RNA-binding motif prote 99.7 5.5E-18 1.9E-22 135.2 10.4 83 187-270 5-87 (116)
49 2d9p_A Polyadenylate-binding p 99.7 7.2E-18 2.4E-22 131.0 10.8 83 186-270 12-94 (103)
50 2cpe_A RNA-binding protein EWS 99.7 7.2E-18 2.5E-22 133.2 10.9 85 186-270 12-104 (113)
51 1p1t_A Cleavage stimulation fa 99.7 1.8E-18 6E-23 134.5 7.2 83 188-270 7-89 (104)
52 2ywk_A Putative RNA-binding pr 99.7 7.7E-18 2.6E-22 128.7 10.6 82 186-268 13-94 (95)
53 2dhg_A TRNA selenocysteine ass 99.7 4.4E-18 1.5E-22 132.3 9.3 85 186-271 6-92 (104)
54 2ek1_A RNA-binding protein 12; 99.7 3E-18 1E-22 131.0 8.1 83 186-268 12-94 (95)
55 2cqp_A RNA-binding protein 12; 99.7 6.1E-18 2.1E-22 130.1 9.6 84 186-269 12-95 (98)
56 1x4e_A RNA binding motif, sing 99.7 1.1E-18 3.7E-23 130.9 5.2 82 187-268 3-84 (85)
57 3egn_A RNA-binding protein 40; 99.7 1.6E-18 5.6E-23 142.8 6.4 89 182-270 38-131 (143)
58 2kxn_B Transformer-2 protein h 99.7 5.4E-18 1.9E-22 137.9 9.4 86 184-269 41-126 (129)
59 2cq3_A RNA-binding protein 9; 99.7 2.7E-17 9.3E-22 127.7 12.9 86 184-271 10-95 (103)
60 1u6f_A Tcubp1, RNA-binding pro 99.7 1.2E-17 4.2E-22 136.6 11.4 85 187-271 40-124 (139)
61 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.3E-17 7.8E-22 128.1 12.4 83 186-270 12-94 (103)
62 2dh8_A DAZ-associated protein 99.7 9.9E-18 3.4E-22 130.7 10.2 84 186-270 13-96 (105)
63 1s79_A Lupus LA protein; RRM, 99.7 5.4E-18 1.8E-22 132.7 8.7 79 187-267 9-87 (103)
64 2do0_A HnRNP M, heterogeneous 99.7 2.6E-17 9E-22 130.0 12.5 84 185-269 11-94 (114)
65 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-17 5.2E-22 127.9 10.7 82 186-270 6-91 (96)
66 2cqd_A RNA-binding region cont 99.7 1.8E-17 6.2E-22 131.6 11.5 83 186-269 14-96 (116)
67 2mss_A Protein (musashi1); RNA 99.7 3.7E-18 1.3E-22 124.9 6.6 75 191-266 1-75 (75)
68 2kn4_A Immunoglobulin G-bindin 99.7 1.2E-17 4.2E-22 139.4 10.7 85 186-270 67-151 (158)
69 2dgw_A Probable RNA-binding pr 99.7 3.3E-17 1.1E-21 124.4 12.1 81 186-269 7-87 (91)
70 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-17 5.9E-22 126.0 10.4 83 186-270 5-87 (92)
71 2cq4_A RNA binding motif prote 99.7 1E-17 3.5E-22 132.6 9.4 79 190-269 26-104 (114)
72 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.1E-17 1.1E-21 137.0 12.7 84 187-270 37-120 (156)
73 2kt5_A RNA and export factor-b 99.7 2.5E-17 8.7E-22 132.4 11.7 84 186-270 32-115 (124)
74 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.9E-18 1.3E-22 132.2 6.4 82 186-269 16-98 (100)
75 3r27_A HnRNP L, heterogeneous 99.7 2E-17 6.8E-22 128.7 10.2 81 183-269 15-97 (100)
76 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-17 8.8E-22 134.4 11.3 81 186-266 60-140 (140)
77 3lqv_A PRE-mRNA branch site pr 99.7 4.5E-17 1.5E-21 129.0 11.8 83 186-271 5-87 (115)
78 2cqg_A TDP-43, TAR DNA-binding 99.7 6.3E-17 2.1E-21 125.7 12.3 83 186-270 12-94 (103)
79 1sjq_A Polypyrimidine tract-bi 99.7 1.6E-17 5.4E-22 130.4 8.8 81 185-271 12-94 (105)
80 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.9E-18 2.3E-22 123.9 6.3 76 190-266 1-76 (77)
81 2ki2_A SS-DNA binding protein 99.7 2.9E-18 9.8E-23 129.9 4.3 81 190-271 2-82 (90)
82 2m2b_A RNA-binding protein 10; 99.7 4.8E-18 1.6E-22 138.2 5.9 82 187-269 21-108 (131)
83 2cpy_A RNA-binding protein 12; 99.7 1.9E-17 6.6E-22 131.4 8.9 82 186-269 12-94 (114)
84 2dis_A Unnamed protein product 99.7 1.8E-17 6.2E-22 129.9 8.6 84 187-270 6-93 (109)
85 2nlw_A Eukaryotic translation 99.7 2.4E-17 8.1E-22 129.0 9.2 80 187-268 13-99 (105)
86 2a3j_A U1 small nuclear ribonu 99.7 2.7E-17 9.1E-22 133.6 9.8 82 186-270 26-111 (127)
87 2jwn_A Embryonic polyadenylate 99.7 3.3E-17 1.1E-21 131.5 10.2 79 190-269 37-115 (124)
88 2err_A Ataxin-2-binding protei 99.7 3.9E-17 1.3E-21 128.6 10.3 82 186-269 26-107 (109)
89 1x4b_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 129.9 9.8 81 189-270 27-107 (116)
90 1x4a_A Splicing factor, argini 99.7 9.9E-17 3.4E-21 125.9 12.0 82 186-270 19-100 (109)
91 2cpi_A CCR4-NOT transcription 99.7 2E-17 6.8E-22 130.7 7.9 84 187-270 13-102 (111)
92 1wg5_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 126.8 10.1 83 186-270 12-95 (104)
93 1wel_A RNA-binding protein 12; 99.7 1.8E-17 6.2E-22 133.4 7.2 82 187-269 23-104 (124)
94 2fc9_A NCL protein; structure 99.7 9.4E-17 3.2E-21 124.2 10.9 81 186-270 12-92 (101)
95 2cpx_A Hypothetical protein FL 99.7 1.5E-17 5.1E-22 131.6 6.2 87 185-271 21-107 (115)
96 1x5o_A RNA binding motif, sing 99.7 8.8E-17 3E-21 127.1 10.5 82 187-269 23-112 (114)
97 2krb_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 123.3 6.0 74 189-264 1-81 (81)
98 2wbr_A GW182, gawky, LD47780P; 99.7 9.2E-17 3.1E-21 121.5 9.8 75 187-267 5-79 (89)
99 4f02_A Polyadenylate-binding p 99.7 1E-16 3.5E-21 140.5 11.6 85 185-269 11-95 (213)
100 1fj7_A Nucleolin RBD1, protein 99.7 7.8E-18 2.7E-22 130.4 3.9 83 186-270 14-96 (101)
101 1iqt_A AUF1, heterogeneous nuc 99.7 1.4E-17 4.9E-22 121.6 5.1 75 191-266 1-75 (75)
102 2cq1_A PTB-like protein L; RRM 99.7 1.6E-16 5.3E-21 124.0 11.2 79 186-270 12-92 (101)
103 1nu4_A U1A RNA binding domain; 99.7 4E-17 1.4E-21 125.2 7.6 82 186-270 5-90 (97)
104 2db1_A Heterogeneous nuclear r 99.7 7.9E-17 2.7E-21 128.8 9.5 80 187-268 15-97 (118)
105 2ad9_A Polypyrimidine tract-bi 99.7 8.3E-17 2.9E-21 129.1 9.6 81 186-272 28-110 (119)
106 2ytc_A PRE-mRNA-splicing facto 99.7 1.8E-16 6.3E-21 118.5 10.7 76 186-267 9-85 (85)
107 2jvr_A Nucleolar protein 3; RN 99.7 7.6E-17 2.6E-21 127.9 9.0 81 186-270 25-106 (111)
108 1wez_A HnRNP H', FTP-3, hetero 99.7 8.2E-17 2.8E-21 125.5 8.9 81 186-269 12-92 (102)
109 2fc8_A NCL protein; structure 99.7 1.6E-16 5.5E-21 123.0 10.5 83 186-271 12-94 (102)
110 2lea_A Serine/arginine-rich sp 99.7 2.1E-17 7.3E-22 135.3 5.7 84 187-270 45-128 (135)
111 2j8a_A Histone-lysine N-methyl 99.7 2.5E-16 8.5E-21 127.0 11.7 81 190-270 3-97 (136)
112 3q2s_C Cleavage and polyadenyl 99.7 5.4E-17 1.9E-21 144.5 8.7 82 188-269 67-150 (229)
113 2jvo_A Nucleolar protein 3; nu 99.7 1.7E-16 5.9E-21 124.9 10.2 77 186-270 28-104 (108)
114 2xnq_A Nuclear polyadenylated 99.7 2.6E-16 9E-21 121.3 11.0 76 186-269 19-95 (97)
115 1why_A Hypothetical protein ri 99.7 1.9E-16 6.4E-21 121.7 10.0 79 186-270 14-94 (97)
116 1wex_A Hypothetical protein (r 99.7 1.4E-16 4.8E-21 124.8 9.4 80 185-270 11-92 (104)
117 2hgl_A HNRPF protein, heteroge 99.7 8.8E-17 3E-21 132.0 8.5 80 187-268 42-124 (136)
118 2dnq_A RNA-binding protein 4B; 99.7 2.4E-16 8.2E-21 119.4 10.3 77 186-270 5-81 (90)
119 2dnn_A RNA-binding protein 12; 99.7 9.8E-17 3.4E-21 126.8 8.3 80 189-271 16-95 (109)
120 2lcw_A RNA-binding protein FUS 99.5 3.9E-18 1.3E-22 135.6 0.0 85 187-271 5-97 (116)
121 2e5j_A Methenyltetrahydrofolat 99.7 2.2E-16 7.4E-21 121.4 9.8 79 186-269 16-94 (97)
122 2la4_A Nuclear and cytoplasmic 99.7 1.8E-16 6E-21 122.7 9.2 76 187-268 25-100 (101)
123 1x4c_A Splicing factor, argini 99.7 3.6E-16 1.2E-20 122.7 11.0 77 187-270 13-94 (108)
124 2xs2_A Deleted in azoospermia- 99.7 9.2E-17 3.1E-21 124.5 7.5 80 187-269 7-86 (102)
125 1x4d_A Matrin 3; structural ge 99.7 1.3E-16 4.4E-21 124.7 8.2 78 186-269 12-92 (102)
126 2f3j_A RNA and export factor b 99.7 2.7E-16 9.3E-21 134.6 11.0 84 186-270 85-168 (177)
127 3md3_A Nuclear and cytoplasmic 99.7 5.4E-16 1.9E-20 128.8 12.4 82 186-267 84-165 (166)
128 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-16 4.2E-21 122.3 7.8 80 186-270 13-92 (96)
129 2lmi_A GRSF-1, G-rich sequence 99.7 5.5E-17 1.9E-21 127.3 5.9 81 186-268 8-91 (107)
130 2cpj_A Non-POU domain-containi 99.7 2.7E-16 9.2E-21 121.3 9.6 79 185-269 11-89 (99)
131 1whx_A Hypothetical protein ri 99.7 1.3E-16 4.6E-21 126.1 8.1 81 188-274 9-89 (111)
132 1x4g_A Nucleolysin TIAR; struc 99.7 3.1E-16 1.1E-20 123.1 9.9 78 187-270 23-100 (109)
133 1fxl_A Paraneoplastic encephal 99.7 5.8E-16 2E-20 128.7 11.8 82 188-269 1-82 (167)
134 2cpd_A Apobec-1 stimulating pr 99.7 9.2E-16 3.1E-20 118.2 12.0 80 183-270 9-90 (99)
135 1b7f_A Protein (SXL-lethal pro 99.7 4.8E-16 1.6E-20 129.7 10.8 82 188-269 2-83 (168)
136 2kvi_A Nuclear polyadenylated 99.7 2.5E-16 8.6E-21 120.9 8.2 77 186-270 7-84 (96)
137 2dgt_A RNA-binding protein 30; 99.6 9.9E-16 3.4E-20 116.5 11.2 77 186-270 7-83 (92)
138 2dgu_A Heterogeneous nuclear r 99.6 8.3E-16 2.8E-20 119.4 10.7 77 186-270 8-84 (103)
139 2hvz_A Splicing factor, argini 99.6 1.8E-16 6E-21 122.7 6.7 76 190-270 1-76 (101)
140 2cqh_A IGF-II mRNA-binding pro 99.6 3.3E-16 1.1E-20 119.3 8.2 79 186-271 5-85 (93)
141 2dnp_A RNA-binding protein 14; 99.6 7.3E-16 2.5E-20 116.7 9.8 77 186-270 6-82 (90)
142 1wf1_A RNA-binding protein RAL 99.6 7.9E-16 2.7E-20 121.0 10.1 75 186-268 24-99 (110)
143 2g4b_A Splicing factor U2AF 65 99.6 1.2E-15 4E-20 128.0 11.5 81 187-267 92-172 (172)
144 2i2y_A Fusion protein consists 99.6 4.6E-16 1.6E-20 129.0 8.7 79 186-269 70-148 (150)
145 1x5p_A Negative elongation fac 99.6 2.2E-15 7.6E-20 115.7 11.7 80 184-271 10-89 (97)
146 1x4f_A Matrin 3; structural ge 99.6 4.3E-16 1.5E-20 123.7 7.8 78 186-269 22-102 (112)
147 2dha_A FLJ20171 protein; RRM d 99.6 3E-16 1E-20 126.7 6.9 80 187-268 21-104 (123)
148 2e44_A Insulin-like growth fac 99.6 9.1E-16 3.1E-20 117.4 8.5 79 187-269 13-92 (96)
149 2yh0_A Splicing factor U2AF 65 99.6 2.3E-15 7.8E-20 129.0 11.9 85 186-270 111-195 (198)
150 2qfj_A FBP-interacting repress 99.6 1.6E-15 5.6E-20 131.7 11.0 83 188-270 124-206 (216)
151 3d2w_A TAR DNA-binding protein 99.6 1.3E-15 4.4E-20 115.7 8.9 76 185-269 7-84 (89)
152 2e5g_A U6 snRNA-specific termi 99.6 1.7E-15 5.8E-20 115.7 9.5 77 188-270 7-83 (94)
153 2cq2_A Hypothetical protein LO 99.6 7.3E-16 2.5E-20 122.6 7.7 82 186-273 22-110 (114)
154 2hgm_A HNRPF protein, heteroge 99.6 8.4E-16 2.9E-20 124.5 7.9 80 186-268 39-120 (126)
155 1l3k_A Heterogeneous nuclear r 99.6 2.3E-15 8E-20 128.7 11.1 83 188-271 103-185 (196)
156 1l3k_A Heterogeneous nuclear r 99.6 2.3E-15 8E-20 128.7 10.8 83 186-269 10-92 (196)
157 2cjk_A Nuclear polyadenylated 99.6 6.3E-16 2.1E-20 129.0 6.9 80 189-269 87-166 (167)
158 1wg1_A KIAA1579 protein, homol 99.6 2.2E-15 7.5E-20 113.8 8.9 75 188-269 4-78 (88)
159 2pe8_A Splicing factor 45; RRM 99.6 4E-15 1.4E-19 116.7 10.4 89 186-274 5-99 (105)
160 2hgn_A Heterogeneous nuclear r 99.6 3.4E-16 1.2E-20 129.0 4.4 80 187-269 44-123 (139)
161 2diu_A KIAA0430 protein; struc 99.6 2.6E-15 8.9E-20 114.7 8.7 73 187-269 6-84 (96)
162 4f02_A Polyadenylate-binding p 99.6 4.2E-15 1.4E-19 130.2 10.7 79 189-269 103-181 (213)
163 1b7f_A Protein (SXL-lethal pro 99.6 5.5E-15 1.9E-19 123.2 10.6 80 187-266 87-168 (168)
164 2dnl_A Cytoplasmic polyadenyla 99.6 2.8E-15 9.6E-20 118.8 7.7 78 187-267 6-86 (114)
165 3md3_A Nuclear and cytoplasmic 99.6 6.6E-15 2.3E-19 122.1 9.5 79 190-269 1-79 (166)
166 1fxl_A Paraneoplastic encephal 99.6 8.7E-15 3E-19 121.5 10.2 79 188-266 87-167 (167)
167 3tyt_A Heterogeneous nuclear r 99.6 7.9E-15 2.7E-19 128.3 10.3 78 187-269 2-80 (205)
168 2bz2_A Negative elongation fac 99.6 7.3E-15 2.5E-19 118.0 9.1 78 186-271 36-113 (121)
169 2qfj_A FBP-interacting repress 99.6 7.7E-15 2.6E-19 127.4 9.9 82 189-270 28-109 (216)
170 3zzy_A Polypyrimidine tract-bi 99.6 1.6E-14 5.4E-19 117.5 10.8 75 190-269 29-106 (130)
171 3beg_B Splicing factor, argini 99.6 3.9E-15 1.3E-19 118.3 6.8 74 188-268 15-93 (115)
172 2cjk_A Nuclear polyadenylated 99.6 8E-15 2.7E-19 122.2 8.5 79 188-268 2-80 (167)
173 3nmr_A Cugbp ELAV-like family 99.6 1.5E-14 5.1E-19 121.2 10.2 81 188-268 2-87 (175)
174 2hzc_A Splicing factor U2AF 65 99.6 1.1E-14 3.7E-19 109.1 8.3 72 187-265 4-86 (87)
175 1sjr_A Polypyrimidine tract-bi 99.5 1.6E-14 5.6E-19 121.7 9.8 76 190-269 47-124 (164)
176 3nmr_A Cugbp ELAV-like family 99.5 1.6E-14 5.4E-19 121.0 9.6 78 188-266 94-174 (175)
177 2e5i_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 114.5 11.3 78 186-269 20-102 (124)
178 1wf0_A TDP-43, TAR DNA-binding 99.5 6.3E-15 2.2E-19 111.1 5.9 77 187-270 3-79 (88)
179 1fje_B Nucleolin RBD12, protei 99.5 2.3E-14 7.7E-19 120.6 9.6 78 187-269 97-174 (175)
180 2voo_A Lupus LA protein; RNA-b 99.5 3.8E-14 1.3E-18 122.8 10.5 77 190-268 110-186 (193)
181 3pgw_A U1-A; protein-RNA compl 99.5 5.2E-14 1.8E-18 127.7 11.5 81 186-269 6-90 (282)
182 2ghp_A U4/U6 snRNA-associated 99.5 2.9E-14 9.8E-19 130.1 9.5 83 186-269 207-291 (292)
183 3smz_A Protein raver-1, ribonu 99.5 6.8E-14 2.3E-18 127.0 11.9 84 186-269 92-175 (284)
184 3sde_A Paraspeckle component 1 99.5 1.4E-13 4.7E-18 124.2 12.6 82 186-268 93-178 (261)
185 3smz_A Protein raver-1, ribonu 99.5 8.3E-14 2.8E-18 126.5 11.2 84 187-271 182-266 (284)
186 3v4m_A Splicing factor U2AF 65 99.5 9.7E-14 3.3E-18 108.7 8.7 88 186-273 2-101 (105)
187 2adc_A Polypyrimidine tract-bi 99.5 6.8E-14 2.3E-18 123.8 8.5 79 186-269 31-110 (229)
188 1fje_B Nucleolin RBD12, protei 99.5 2.1E-14 7.1E-19 120.9 4.9 82 186-269 10-91 (175)
189 3u1l_A PRE-mRNA-splicing facto 99.5 8.3E-14 2.8E-18 124.5 8.1 77 187-269 132-229 (240)
190 3pgw_A U1-A; protein-RNA compl 99.5 2.6E-13 9E-18 123.0 11.5 77 186-267 204-281 (282)
191 2dit_A HIV TAT specific factor 99.4 5.5E-13 1.9E-17 105.2 11.1 80 186-269 12-102 (112)
192 3tyt_A Heterogeneous nuclear r 99.4 1.7E-13 5.9E-18 119.7 8.2 79 186-266 120-204 (205)
193 3sde_A Paraspeckle component 1 99.4 3.1E-13 1.1E-17 121.9 9.7 77 186-268 19-95 (261)
194 1qm9_A Polypyrimidine tract-bi 99.4 1.5E-13 5.2E-18 118.1 7.2 76 189-269 3-79 (198)
195 1qm9_A Polypyrimidine tract-bi 99.4 3.9E-13 1.3E-17 115.5 9.7 79 186-269 117-197 (198)
196 3ue2_A Poly(U)-binding-splicin 99.4 3.9E-13 1.3E-17 107.6 8.6 87 187-273 18-113 (118)
197 2adc_A Polypyrimidine tract-bi 99.4 7.9E-13 2.7E-17 116.8 10.5 79 186-269 148-228 (229)
198 1jmt_A Splicing factor U2AF 35 99.4 1.2E-13 4.1E-18 108.0 4.4 72 194-266 20-103 (104)
199 2ghp_A U4/U6 snRNA-associated 99.4 5.8E-13 2E-17 121.4 9.5 82 188-270 116-198 (292)
200 2yh0_A Splicing factor U2AF 65 99.4 1.2E-12 4.1E-17 111.9 8.9 75 188-269 3-88 (198)
201 2g4b_A Splicing factor U2AF 65 99.4 1.2E-12 4.1E-17 109.4 8.5 74 188-268 3-87 (172)
202 3tht_A Alkylated DNA repair pr 99.3 8.7E-12 3E-16 117.0 9.6 76 186-267 15-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.3 3.3E-11 1.1E-15 93.5 10.6 65 199-270 27-91 (100)
204 3s6e_A RNA-binding protein 39; 99.2 3.5E-11 1.2E-15 95.6 9.3 85 187-275 5-99 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 8.3E-11 2.8E-15 88.9 8.5 78 184-270 2-87 (91)
206 1owx_A Lupus LA protein, SS-B, 99.0 8.3E-10 2.8E-14 88.3 7.7 77 186-268 15-95 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 1.7E-09 5.8E-14 82.2 6.9 75 184-267 10-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.8 5.3E-09 1.8E-13 91.7 7.7 74 201-274 141-218 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.2 1.3E-05 4.6E-10 62.1 9.5 74 187-266 19-97 (117)
210 1wey_A Calcipressin 1; structu 97.3 0.00049 1.7E-08 52.9 6.8 74 189-268 5-83 (104)
211 2dhx_A Poly (ADP-ribose) polym 96.7 0.012 3.9E-07 45.1 9.1 71 187-266 6-81 (104)
212 1whv_A Poly(A)-specific ribonu 96.7 0.0054 1.9E-07 46.5 7.1 61 182-251 8-69 (100)
213 1uw4_A UPF3X; nonsense mediate 96.6 0.009 3.1E-07 44.8 7.8 68 190-257 2-71 (91)
214 3ctr_A Poly(A)-specific ribonu 96.0 0.012 4.1E-07 44.7 5.7 54 190-252 7-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 95.9 0.026 9E-07 44.4 7.3 72 188-267 23-95 (119)
216 2l08_A Regulator of nonsense t 94.6 0.063 2.1E-06 40.6 5.7 78 189-266 9-93 (97)
217 3pq1_A Poly(A) RNA polymerase; 94.3 0.023 7.9E-07 54.9 3.5 55 190-250 54-108 (464)
218 2kn4_A Immunoglobulin G-bindin 94.3 0.039 1.3E-06 44.7 4.2 34 218-253 2-35 (158)
219 3p3d_A Nucleoporin 53; structu 93.7 0.09 3.1E-06 41.9 5.1 77 189-267 7-97 (132)
220 2i2y_A Fusion protein consists 93.1 0.028 9.5E-07 45.3 1.3 41 227-268 9-50 (150)
221 3bkp_A Cyclophilin; malaria, i 82.5 0.78 2.7E-05 40.1 3.1 29 98-126 177-205 (232)
222 2poe_A Cyclophilin-like protei 79.1 0.75 2.6E-05 38.8 1.8 25 99-123 160-184 (185)
223 3d45_A Poly(A)-specific ribonu 77.5 5 0.00017 39.0 7.3 56 189-253 440-495 (507)
224 2ok3_A Peptidyl-prolyl CIS-tra 76.3 1.2 4E-05 36.6 2.1 21 99-119 141-161 (161)
225 3bo7_A Peptidyl-prolyl CIS-tra 74.7 1.2 4.2E-05 37.9 1.9 23 99-121 158-180 (201)
226 2hq6_A Serologically defined c 69.4 2 6.7E-05 36.2 1.9 22 98-119 164-185 (185)
227 2g0c_A ATP-dependent RNA helic 56.6 26 0.00088 24.2 5.7 68 191-267 2-75 (76)
228 1zkc_A Peptidyl-prolyl CIS-tra 53.5 2.8 9.6E-05 35.6 0.1 22 99-120 160-181 (197)
229 3ich_A Peptidyl-prolyl CIS-tra 46.9 4.5 0.00015 34.0 0.3 23 99-121 163-187 (188)
230 1btq_A BAND 3 anion transport 34.9 12 0.0004 21.1 0.6 14 7-20 9-22 (26)
231 1bnx_A Protein (BAND 3); human 33.7 15 0.00052 21.9 1.1 15 7-21 16-30 (34)
232 2ose_A Probable peptidyl-proly 26.5 11 0.00037 32.8 -0.7 28 99-126 192-219 (234)
233 3mhp_C TIC62_peptide, ferredox 22.3 53 0.0018 18.2 1.8 18 115-132 7-24 (26)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=9.9e-21 Score=147.12 Aligned_cols=83 Identities=29% Similarity=0.427 Sum_probs=79.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
...+++|||+|||+++|+++|+.+|++||.|.++.+++|+.||.++|||||+|.+.++|.+|+..|||..++|++|.|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=145.26 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=80.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.+|.++|||+|||+.+++++|+.+|++||.|.++.|+.|+.||+++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9643
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-20 Score=141.72 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=75.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCc--eeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc----eeCCeeEE
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGK--VNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV----LIDDRRIH 262 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~--I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~----~i~gr~I~ 262 (309)
=+||||+|||+++|+++|+.+|++||. +.+|++++|+.||.++|||||+|.+.++|.+|++.|||. .|+|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 379999999999999999999999995 678999999999999999999999999999999999995 69999999
Q ss_pred EEeecC
Q psy15676 263 ARGEEW 268 (309)
Q Consensus 263 V~~a~~ 268 (309)
|++|++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=133.69 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=77.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++.++|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=6.1e-20 Score=140.33 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=75.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcC-CceeCCeeEEEEee
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFG-KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD-NVLIDDRRIHARGE 266 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG-~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~-g~~i~gr~I~V~~a 266 (309)
+++|||+|||+++|+++|+.+|++|| .|.++++++|+.||.++|||||+|.+.++|.+|++.++ +..++|++|.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999998875 57899999999999
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
.++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 6
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=5.1e-19 Score=132.46 Aligned_cols=82 Identities=26% Similarity=0.319 Sum_probs=78.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+++++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q psy15676 266 EE 267 (309)
Q Consensus 266 a~ 267 (309)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 7
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=7.9e-19 Score=134.85 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=79.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
|.++|||+|||+.+++++|..+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cch
Q psy15676 268 WNM 270 (309)
Q Consensus 268 ~~~ 270 (309)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 8
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=9.7e-19 Score=130.33 Aligned_cols=80 Identities=26% Similarity=0.307 Sum_probs=77.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
.+|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|++|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999764
No 9
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=9.2e-19 Score=135.25 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=80.1
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeE--------EEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc
Q psy15676 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNC--------CEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV 254 (309)
Q Consensus 183 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~--------v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~ 254 (309)
....++.++|||+|||+++++++|+.+|++||.|.. +.++.++.||.++|||||+|.+.++|.+|+..|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeCCeeEEEEeec
Q psy15676 255 LIDDRRIHARGEE 267 (309)
Q Consensus 255 ~i~gr~I~V~~a~ 267 (309)
.++|+.|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999984
No 10
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=133.23 Aligned_cols=84 Identities=27% Similarity=0.447 Sum_probs=79.9
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q psy15676 265 GEEW 268 (309)
Q Consensus 265 ~a~~ 268 (309)
+|++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 11
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7e-19 Score=134.81 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=80.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEE-EEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCC-EVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v-~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
++.++|||+|||+.+++++|..+|++||.|..+ .++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
|.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987543
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=133.84 Aligned_cols=86 Identities=27% Similarity=0.391 Sum_probs=81.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
++++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987543
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=133.95 Aligned_cols=85 Identities=20% Similarity=0.288 Sum_probs=80.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. |+|..++|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987543
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=134.91 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=81.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|..+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
++++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=132.18 Aligned_cols=82 Identities=29% Similarity=0.391 Sum_probs=78.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q psy15676 266 EE 267 (309)
Q Consensus 266 a~ 267 (309)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 16
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=136.33 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=80.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|..+|++||.|.++.++.++.||.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97643
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=132.88 Aligned_cols=84 Identities=23% Similarity=0.375 Sum_probs=80.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCch
Q psy15676 267 EWNM 270 (309)
Q Consensus 267 ~~~~ 270 (309)
..+.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8643
No 18
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=135.52 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=81.9
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..++.++|||+|||+.+++++|..+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCchh
Q psy15676 265 GEEWNMW 271 (309)
Q Consensus 265 ~a~~~~~ 271 (309)
++++...
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987543
No 19
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.3e-18 Score=136.79 Aligned_cols=85 Identities=21% Similarity=0.272 Sum_probs=80.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|..+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98654
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=135.75 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=81.7
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcC------CceeCC
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD------NVLIDD 258 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~------g~~i~g 258 (309)
...+.++|||+|||+++++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|| |..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eeEEEEeecCchh
Q psy15676 259 RRIHARGEEWNMW 271 (309)
Q Consensus 259 r~I~V~~a~~~~~ 271 (309)
+.|.|.++.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987543
No 21
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=2.9e-19 Score=135.92 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=73.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFG--KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG--~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
.+|||+|||+++|+++|+.+|++|| .|.++.++.++.||.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred Cch
Q psy15676 268 WNM 270 (309)
Q Consensus 268 ~~~ 270 (309)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 22
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=3.2e-18 Score=135.62 Aligned_cols=86 Identities=27% Similarity=0.421 Sum_probs=81.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
+.++..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987543
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=132.36 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=79.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|+++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98654
No 24
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=134.24 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=80.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|.++.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98643
No 25
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=133.94 Aligned_cols=86 Identities=30% Similarity=0.478 Sum_probs=81.3
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..++.++|||+|||+++++++|+.+|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCch
Q psy15676 265 GEEWNM 270 (309)
Q Consensus 265 ~a~~~~ 270 (309)
+|+++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998654
No 26
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=135.66 Aligned_cols=84 Identities=21% Similarity=0.365 Sum_probs=80.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|+++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9754
No 27
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=132.84 Aligned_cols=85 Identities=19% Similarity=0.356 Sum_probs=80.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCcee-EEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCee----
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVN-CCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR---- 260 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~-~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~---- 260 (309)
..+.++|||+|||+++++++|+.+|++||.|. ++.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45679999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEeecCch
Q psy15676 261 IHARGEEWNM 270 (309)
Q Consensus 261 I~V~~a~~~~ 270 (309)
|+|++|++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997643
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=134.36 Aligned_cols=85 Identities=26% Similarity=0.369 Sum_probs=80.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|..+|++||.|..+.++.++.||.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|+...
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98643
No 29
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.8e-18 Score=127.87 Aligned_cols=80 Identities=29% Similarity=0.409 Sum_probs=75.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|+.+|++||.|.++.++.++.||.++|||||+|.+.++|.+|+. ++|..++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999996 588999999999987
Q ss_pred e
Q psy15676 266 E 266 (309)
Q Consensus 266 a 266 (309)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 30
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=144.42 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=78.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFG--KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG--~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..++|||+|||+++|+++|+.+|++|| .|.++.++.|+.||.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97643
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=2.8e-18 Score=136.06 Aligned_cols=85 Identities=31% Similarity=0.426 Sum_probs=80.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+++++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
++++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 98654
No 32
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=5e-19 Score=137.46 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=77.9
Q ss_pred CCcEEEecCCCC------CCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC-ee
Q psy15676 188 PENVLFVCKLNP------VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD-RR 260 (309)
Q Consensus 188 ~~~~lfV~nL~~------~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g-r~ 260 (309)
.+++|||+|||+ ++++++|+.+|++||.|.++.++.++.||.++|||||+|.+.++|.+|+..|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 458999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEeecC
Q psy15676 261 IHARGEEW 268 (309)
Q Consensus 261 I~V~~a~~ 268 (309)
|.|.+|.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999964
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=132.40 Aligned_cols=84 Identities=24% Similarity=0.461 Sum_probs=79.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCC---CCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKV---TGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~---tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
++.++|||+|||+++++++|+.+|++||.|..+.++.++. |+.++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6799999999999999999999999999999999999
Q ss_pred EeecCch
Q psy15676 264 RGEEWNM 270 (309)
Q Consensus 264 ~~a~~~~ 270 (309)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998644
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=2.9e-18 Score=136.45 Aligned_cols=80 Identities=28% Similarity=0.500 Sum_probs=74.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
..+|||+|||+++++++|+.+|++||.|.+|.|+.+. +.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999986 45899999999999999999999999999999999999876
Q ss_pred ch
Q psy15676 269 NM 270 (309)
Q Consensus 269 ~~ 270 (309)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 35
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=3.2e-18 Score=144.64 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=80.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|..+|++||.|..|.++.++.||.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
|.++..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987543
No 36
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=5.2e-18 Score=132.63 Aligned_cols=82 Identities=26% Similarity=0.342 Sum_probs=78.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|..+|++||.|.++.++.++ +|.++|||||+|.+.++|.+|+..|||..++|+.|.|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
|.+
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 863
No 37
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=128.72 Aligned_cols=82 Identities=28% Similarity=0.432 Sum_probs=77.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCC-cccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGD-SLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~-skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
..++|||+|||+++++++|..+|++||.|.++.++.+..++. ++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458999999999999999999999999999999999988766 9999999999999999999999999999999999999
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 38
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=5.7e-18 Score=131.68 Aligned_cols=83 Identities=27% Similarity=0.420 Sum_probs=78.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|+.+|++|| |..+.++.++.||.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45678999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98644
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=5e-18 Score=132.25 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=79.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC---eeEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD---RRIH 262 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g---r~I~ 262 (309)
.++.++|||+|||+.+++++|..+|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4567999999999999999999999999999999999998 79999999999999999999999999999998 9999
Q ss_pred EEeecCchh
Q psy15676 263 ARGEEWNMW 271 (309)
Q Consensus 263 V~~a~~~~~ 271 (309)
|.+|+++..
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999987543
No 40
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=132.77 Aligned_cols=85 Identities=14% Similarity=0.271 Sum_probs=79.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCC-CCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVT-GDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~t-g~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
.++.++|||+|||+++++++|+.+|++|| |..+.++.++.| |.++|||||+|.+.++|.+|+ .|||..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45678999999999999999999999999 999999999988 999999999999999999999 999999999999999
Q ss_pred eecCchhh
Q psy15676 265 GEEWNMWK 272 (309)
Q Consensus 265 ~a~~~~~~ 272 (309)
+|.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99875443
No 41
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.6e-18 Score=138.40 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=83.3
Q ss_pred CCCCCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCee
Q psy15676 181 PEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR 260 (309)
Q Consensus 181 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~ 260 (309)
+......+.++|||+|||+.+|+++|..+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34444566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCchh
Q psy15676 261 IHARGEEWNMW 271 (309)
Q Consensus 261 I~V~~a~~~~~ 271 (309)
|.|.+|.+...
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999986443
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=132.97 Aligned_cols=85 Identities=15% Similarity=0.318 Sum_probs=80.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeee-CCCCCcccEEEEEecCHHHHHHHHHHc-CCceeCCeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRD-KVTGDSLQYAFVEFDNPKSCEDAYLKM-DNVLIDDRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d-~~tg~skG~aFV~F~~~~~a~~Al~~l-~g~~i~gr~I~V 263 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++.+ +.+|.++|||||+|.+.++|.+|+..| ||..++|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456789999999999999999999999999999999999 789999999999999999999999999 999999999999
Q ss_pred EeecCch
Q psy15676 264 RGEEWNM 270 (309)
Q Consensus 264 ~~a~~~~ 270 (309)
.+|.++.
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998754
No 43
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=1e-17 Score=162.64 Aligned_cols=83 Identities=27% Similarity=0.442 Sum_probs=79.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.||.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
|.+
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 975
No 44
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=4.6e-18 Score=135.37 Aligned_cols=81 Identities=32% Similarity=0.466 Sum_probs=77.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++.++|||+|||+++++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 45
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=5.6e-18 Score=127.82 Aligned_cols=80 Identities=24% Similarity=0.446 Sum_probs=76.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
.++|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+ .|||..++|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999989999999999999999999999 8999999999999999976
Q ss_pred c
Q psy15676 269 N 269 (309)
Q Consensus 269 ~ 269 (309)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 46
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=3.6e-18 Score=133.29 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=80.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee---CCeeEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI---DDRRIH 262 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i---~gr~I~ 262 (309)
.++.++|||+|||+++++++|+.+|++||.|..+.++.++.||.++|||||+|.+.++|.+|+..|||..+ +|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999887 899999
Q ss_pred EEeecCch
Q psy15676 263 ARGEEWNM 270 (309)
Q Consensus 263 V~~a~~~~ 270 (309)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998654
No 47
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4.9e-18 Score=133.94 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=76.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
...+.++|||+|||+++++++|+.+|++||.|.++.++.++.||.++|||||+|.+.++|.+|+..+ |..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999875 699999999999
Q ss_pred eecCch
Q psy15676 265 GEEWNM 270 (309)
Q Consensus 265 ~a~~~~ 270 (309)
++.+..
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998654
No 48
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=135.17 Aligned_cols=83 Identities=24% Similarity=0.424 Sum_probs=78.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.+.++|||+|||+++++++|..+|++||.|.++.++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCch
Q psy15676 267 EWNM 270 (309)
Q Consensus 267 ~~~~ 270 (309)
++..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8643
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.2e-18 Score=131.03 Aligned_cols=83 Identities=22% Similarity=0.359 Sum_probs=78.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|..+.++.+ +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456789999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|.++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98754
No 50
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=133.19 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=80.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCcee--------EEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVN--------CCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID 257 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~--------~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~ 257 (309)
..+.++|||+|||+.+++++|+.+|++||.|. .+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999998 6999999899999999999999999999999999999999
Q ss_pred CeeEEEEeecCch
Q psy15676 258 DRRIHARGEEWNM 270 (309)
Q Consensus 258 gr~I~V~~a~~~~ 270 (309)
|+.|+|.+++++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998754
No 51
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-18 Score=134.52 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=79.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred Cch
Q psy15676 268 WNM 270 (309)
Q Consensus 268 ~~~ 270 (309)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 644
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=128.71 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=77.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|+.+|++||.|.++.++.++. |.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34668999999999999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
|++
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 53
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=132.33 Aligned_cols=85 Identities=24% Similarity=0.319 Sum_probs=79.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhc-CCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCce-eCCeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSR-FGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVL-IDDRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~-fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~-i~gr~I~V 263 (309)
.++.++|||+|||+++++++|+.+|++ ||.|.++.++.++ +|.++|||||+|.+.++|.+|+..|+|.. ++|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 356789999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EeecCchh
Q psy15676 264 RGEEWNMW 271 (309)
Q Consensus 264 ~~a~~~~~ 271 (309)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99976543
No 54
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=3e-18 Score=131.01 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=76.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 55
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=130.12 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=78.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45568999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 56
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-18 Score=130.85 Aligned_cols=82 Identities=26% Similarity=0.430 Sum_probs=77.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++.++|||+|||+++++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cC
Q psy15676 267 EW 268 (309)
Q Consensus 267 ~~ 268 (309)
.+
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 57
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=142.80 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=76.2
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEE--E---eeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee
Q psy15676 182 EADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCE--V---IRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI 256 (309)
Q Consensus 182 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~--i---~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i 256 (309)
......+.++|||+|||+.+|+++|..+|++||.|..+. + +....+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 38 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 38 SYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp TCCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 334466789999999999999999999999999987641 1 11124789999999999999999999999999999
Q ss_pred CCeeEEEEeecCch
Q psy15676 257 DDRRIHARGEEWNM 270 (309)
Q Consensus 257 ~gr~I~V~~a~~~~ 270 (309)
+|+.|.|.+|++..
T Consensus 118 ~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 118 FGKPMVVQFARSAR 131 (143)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999998654
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=5.4e-18 Score=137.88 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=81.1
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 184 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
...++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCc
Q psy15676 264 RGEEWN 269 (309)
Q Consensus 264 ~~a~~~ 269 (309)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 999764
No 59
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=127.71 Aligned_cols=86 Identities=23% Similarity=0.402 Sum_probs=78.5
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 184 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
....+.++|||+|||+.+++++|+.+|++||.|..+.++.+.. .++|||||+|.+.++|.+|+..|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3356679999999999999999999999999999999998864 38999999999999999999999999999999999
Q ss_pred EeecCchh
Q psy15676 264 RGEEWNMW 271 (309)
Q Consensus 264 ~~a~~~~~ 271 (309)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99987543
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=136.63 Aligned_cols=85 Identities=20% Similarity=0.320 Sum_probs=80.5
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.+.++|||+|||+++++++|+.+|+.||.|.++.++.++.||.++|||||+|.+.++|.+|+..|||..++|+.|.|.+|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchh
Q psy15676 267 EWNMW 271 (309)
Q Consensus 267 ~~~~~ 271 (309)
.+...
T Consensus 120 ~~~~~ 124 (139)
T 1u6f_A 120 ASGHQ 124 (139)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=128.14 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=77.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|..|.++.++. .++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 45678999999999999999999999999999999999864 3689999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+++..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98754
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.9e-18 Score=130.68 Aligned_cols=84 Identities=27% Similarity=0.416 Sum_probs=79.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98654
No 63
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=132.66 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=74.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.+.++|||+|||+++|+++|..+|++||.|.+|.++.++. |.++|||||+|.+.++|.+|+. ++|..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999999987 9999999999999999999998 8999999999999977
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 5
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=130.02 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=78.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..++.++|||+|||+.+++++|+.+|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 35667899999999999999999999999999999999997 69999999999999999999999999999999999999
Q ss_pred eecCc
Q psy15676 265 GEEWN 269 (309)
Q Consensus 265 ~a~~~ 269 (309)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 99753
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=127.91 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=76.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHH----HHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLE----IIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~----~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I 261 (309)
..+.++|||+|||+.+++++|+ .+|++||.|.++.++.++.+ +|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999998765 8999999999999999999999999999999
Q ss_pred EEEeecCch
Q psy15676 262 HARGEEWNM 270 (309)
Q Consensus 262 ~V~~a~~~~ 270 (309)
+|++|++..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997643
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=131.58 Aligned_cols=83 Identities=28% Similarity=0.372 Sum_probs=78.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|..+.++.++.|+.++|||||+|.+.++|.+|+..+++ .++|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9753
No 67
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=3.7e-18 Score=124.94 Aligned_cols=75 Identities=24% Similarity=0.393 Sum_probs=72.1
Q ss_pred EEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 191 VLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 191 ~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.+.++|++|+. ++|..++|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999999899999999999999999999997 9999999999999875
No 68
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.2e-17 Score=139.45 Aligned_cols=85 Identities=29% Similarity=0.444 Sum_probs=80.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+..+|||+|||+++++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|++..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98753
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=124.36 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=76.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
....++|||+|||+++++++|+.+|++| .|..+.++.+ .+|.++|||||+|.+.++|.+|+. |||..++|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999 789999999999999999999999 999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|++.
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9765
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.7e-17 Score=126.01 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=77.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+++++++|+.+|++||.|..+.++.+ +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999874 789999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+++..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98643
No 71
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=132.60 Aligned_cols=79 Identities=25% Similarity=0.274 Sum_probs=76.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
++|||+|||+.+++++|+.+|++||.|..+.++.++.||.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++...
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 79999999999999999999999999999999999999999999999999999999999 99999999999999999753
No 72
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=3.1e-17 Score=137.00 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=80.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++.++|||+|||+.+|+++|..+|++||.|..|.|+.++.|+.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCch
Q psy15676 267 EWNM 270 (309)
Q Consensus 267 ~~~~ 270 (309)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 73
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=2.5e-17 Score=132.36 Aligned_cols=84 Identities=25% Similarity=0.327 Sum_probs=79.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|.++.++.++ +|.++|||||+|.+.++|.+|+..|||..++|+.|.|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98643
No 74
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-18 Score=132.22 Aligned_cols=82 Identities=15% Similarity=0.295 Sum_probs=75.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeC-CCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDK-VTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~-~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
.++.++|||+|||+++++++|+.+|++|| |.++.++.++ .+|.++|||||+|.+.++|.+|+ .|+|..++|+.|.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45678999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred eecCc
Q psy15676 265 GEEWN 269 (309)
Q Consensus 265 ~a~~~ 269 (309)
+|++.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99764
No 75
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=128.66 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc--eeCCee
Q psy15676 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV--LIDDRR 260 (309)
Q Consensus 183 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~--~i~gr~ 260 (309)
....+|+++|||+|||+.+|+++|..+|++||.|.++.+++ ++|||||+|.+.++|.+|+..|+|. .++|++
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 34467889999999999999999999999999999999874 4689999999999999999999986 489999
Q ss_pred EEEEeecCc
Q psy15676 261 IHARGEEWN 269 (309)
Q Consensus 261 I~V~~a~~~ 269 (309)
|.|+||+++
T Consensus 89 i~V~~S~~k 97 (100)
T 3r27_A 89 AFVNYSTSQ 97 (100)
T ss_dssp EEEEECSCS
T ss_pred EEEEecccc
Confidence 999999764
No 76
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=134.41 Aligned_cols=81 Identities=26% Similarity=0.318 Sum_probs=76.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q psy15676 266 E 266 (309)
Q Consensus 266 a 266 (309)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 77
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=4.5e-17 Score=128.99 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=75.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|..+|++||.|.++.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999865 55699999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
+.+...
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986443
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.3e-17 Score=125.65 Aligned_cols=83 Identities=27% Similarity=0.318 Sum_probs=77.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999998 58899999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98643
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=130.40 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=73.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC--ceeCCeeEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN--VLIDDRRIH 262 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g--~~i~gr~I~ 262 (309)
+.++.++|||+|||+++|+++|+.+|++||.|.++.++.+ +|||||+|.+.++|.+|+..|++ ..++|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567899999999999999999999999999999999864 69999999999999999998864 799999999
Q ss_pred EEeecCchh
Q psy15676 263 ARGEEWNMW 271 (309)
Q Consensus 263 V~~a~~~~~ 271 (309)
|++|+++.-
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999987543
No 80
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-18 Score=123.88 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=73.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..++ ..++|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999988 9999999999987
No 81
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.9e-18 Score=129.94 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=74.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
++|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.+.+ |.+|+..|||..++|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999865
Q ss_pred hh
Q psy15676 270 MW 271 (309)
Q Consensus 270 ~~ 271 (309)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 82
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-18 Score=138.18 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=77.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeE--EEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc----eeCCee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNC--CEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV----LIDDRR 260 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~--v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~----~i~gr~ 260 (309)
.+.++|||+|||+++|+++|+.+|++||.|.. |.|++|+.||.++|||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999976 99999999999999999999999 999999999999 999999
Q ss_pred EEEEeecCc
Q psy15676 261 IHARGEEWN 269 (309)
Q Consensus 261 I~V~~a~~~ 269 (309)
|.|.+|.+.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 83
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=131.39 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=77.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCce-eEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKV-NCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I-~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..+.++|||+|||+++|+++|+.+|+.||.| ..+.|+.++ +|.++|||||+|.+.++|.+|+.. ||..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999999999999999999999 899999998 999999999999999999999986 9999999999999
Q ss_pred eecCc
Q psy15676 265 GEEWN 269 (309)
Q Consensus 265 ~a~~~ 269 (309)
+|..+
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99653
No 84
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=129.94 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=78.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCc-eeEEEEe-eeCCCCCcccEEEEEecCHHHHHHHHHHcC--CceeCCeeEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGK-VNCCEVI-RDKVTGDSLQYAFVEFDNPKSCEDAYLKMD--NVLIDDRRIH 262 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~-I~~v~i~-~d~~tg~skG~aFV~F~~~~~a~~Al~~l~--g~~i~gr~I~ 262 (309)
.+.++|||+|||+.+++++|+.+|++||. |..+.++ .+..+|.++|||||+|.+.++|.+|+..|+ +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 888899999999999999999999999996 5999999999
Q ss_pred EEeecCch
Q psy15676 263 ARGEEWNM 270 (309)
Q Consensus 263 V~~a~~~~ 270 (309)
|.+|.++.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998643
No 85
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=128.96 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=74.3
Q ss_pred CCCcEEEecCCCCCC------CHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCe-
Q psy15676 187 PPENVLFVCKLNPVT------SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDR- 259 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~------te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr- 259 (309)
...++|||+|||+.+ |+++|+.+|++||.|.++.++ +.+|.++|||||+|.+.++|.+|+..|||..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999988 46899999999999999999999999999999998
Q ss_pred eEEEEeecC
Q psy15676 260 RIHARGEEW 268 (309)
Q Consensus 260 ~I~V~~a~~ 268 (309)
.|.|.+|..
T Consensus 91 ~l~V~~a~~ 99 (105)
T 2nlw_A 91 TFRVNLFTD 99 (105)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEcch
Confidence 999999864
No 86
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=133.60 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=74.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHH----HHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLE----IIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~----~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I 261 (309)
.+|.++|||+|||+.+++++|+ .+|++||.|.+|.+.. +|.++|||||+|.+.++|..|+..|||..++|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999999876 6999999999987743 68899999999999999999999999999999999
Q ss_pred EEEeecCch
Q psy15676 262 HARGEEWNM 270 (309)
Q Consensus 262 ~V~~a~~~~ 270 (309)
.|++|+.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998643
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=3.3e-17 Score=131.48 Aligned_cols=79 Identities=28% Similarity=0.463 Sum_probs=76.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
++|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+ .|||..++|+.|.|.++++.
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 79999999999999999999999999999999999999999999999999999999999 79999999999999999864
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=128.64 Aligned_cols=82 Identities=24% Similarity=0.406 Sum_probs=76.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|+.+|++||.|..+.++.+. +.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|+++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 89
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.5e-17 Score=129.89 Aligned_cols=81 Identities=23% Similarity=0.362 Sum_probs=77.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
.++|||+|||+.+++++|+.+|++||.|..+.++.++.||.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 37999999999999999999999999999999999999999999999999999999999987 99999999999999987
Q ss_pred ch
Q psy15676 269 NM 270 (309)
Q Consensus 269 ~~ 270 (309)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.9e-17 Score=125.88 Aligned_cols=82 Identities=23% Similarity=0.391 Sum_probs=75.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|+.+|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999865 456899999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+++..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98754
No 91
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=130.69 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=77.3
Q ss_pred CCCcEEEecCCCCCCCHHHHH---HHHhcCCceeEEEEeeeCCCC---CcccEEEEEecCHHHHHHHHHHcCCceeCCee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLE---IIFSRFGKVNCCEVIRDKVTG---DSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR 260 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~---~~F~~fG~I~~v~i~~d~~tg---~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~ 260 (309)
.+.++|||+|||+++++++|. .+|++||.|..+.++.+..++ .++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 999999999999999888754 45699999999999999999999999999999
Q ss_pred EEEEeecCch
Q psy15676 261 IHARGEEWNM 270 (309)
Q Consensus 261 I~V~~a~~~~ 270 (309)
|.|.+|.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 92
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=126.81 Aligned_cols=83 Identities=22% Similarity=0.187 Sum_probs=76.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeE-EEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNC-CEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~-v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..+.++|||+|||+++|+++|+.+|++||.|.. +.|+.+ .+|+++|||||+|.+.++|.+|+.. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 456789999999999999999999999999987 888888 6899999999999999999999987 9999999999999
Q ss_pred eecCch
Q psy15676 265 GEEWNM 270 (309)
Q Consensus 265 ~a~~~~ 270 (309)
.+....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987543
No 93
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=133.40 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=76.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.+.++|||+|||+++|+++|..+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+. |||..|+|+.|.|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999887777777899999999999999999999999 9999999999999999
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 94
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.4e-17 Score=124.22 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=74.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.| .++.+ .+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567999999999999999999999999987 56666 5899999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
++++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98753
No 95
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-17 Score=131.64 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..++.++|||+|||+.+|+++|..+|++||.|..+.+..+..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34577999999999999999999999999999443332233378999999999999999999999999999999999999
Q ss_pred eecCchh
Q psy15676 265 GEEWNMW 271 (309)
Q Consensus 265 ~a~~~~~ 271 (309)
+|.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9987543
No 96
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.8e-17 Score=127.08 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=76.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee--------CC
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI--------DD 258 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i--------~g 258 (309)
.+.++|||+|||+++++++|+.+|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+ .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred eeEEEEeecCc
Q psy15676 259 RRIHARGEEWN 269 (309)
Q Consensus 259 r~I~V~~a~~~ 269 (309)
++|.|.||.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999753
No 97
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=123.29 Aligned_cols=74 Identities=24% Similarity=0.402 Sum_probs=68.4
Q ss_pred CcEEEecCCCCCC------CHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCe-eE
Q psy15676 189 ENVLFVCKLNPVT------SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDR-RI 261 (309)
Q Consensus 189 ~~~lfV~nL~~~~------te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr-~I 261 (309)
+++|||+|||+.+ ++++|+.+|++||.|.++.++ +.+|.++|||||+|.+.++|.+|+..|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 46899999999999999999999999999999999 88
Q ss_pred EEE
Q psy15676 262 HAR 264 (309)
Q Consensus 262 ~V~ 264 (309)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 98
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=9.2e-17 Score=121.47 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
....-|||+||++.+|+++|+.+|.+||+|.++.+.. ++|||||+|.+.++|.+|++.|||..++|+.|.|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3467899999999999999999999999999999854 6899999999999999999999999999999999999
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1e-16 Score=140.51 Aligned_cols=85 Identities=28% Similarity=0.389 Sum_probs=78.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
+..|.++|||+|||+++|+++|+.+|++||.|.+|.|++|+.||.++|||||+|.+.++|.+|+..++|..+.|+.|.+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCc
Q psy15676 265 GEEWN 269 (309)
Q Consensus 265 ~a~~~ 269 (309)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 98753
No 100
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=7.8e-18 Score=130.36 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=76.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|+.+|++||.|.. .++.+..+|.++|||||+|.+.++|.+|+. |||..++|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999987 677777789999999999999999999998 999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|+++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98643
No 101
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.4e-17 Score=121.63 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=71.7
Q ss_pred EEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 191 VLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 191 ~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+|||+|||+++++++|+.+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+. ++|..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999997 4999999999999875
No 102
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=123.96 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=71.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHc--CCceeCCeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM--DNVLIDDRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l--~g~~i~gr~I~V 263 (309)
.+|.++|||+|||+.+++++|+.+|++||.|.++.++.+ +|||||+|.+.++|.+|+..| ++..++|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 567899999999999999999999999999999988753 699999999999999999976 568899999999
Q ss_pred EeecCch
Q psy15676 264 RGEEWNM 270 (309)
Q Consensus 264 ~~a~~~~ 270 (309)
++|+++.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9998654
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=4e-17 Score=125.18 Aligned_cols=82 Identities=26% Similarity=0.362 Sum_probs=75.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHH----HHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLE----IIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~----~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I 261 (309)
.++.++|||+|||+++++++|+ .+|++||.|..+.+.. +|.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4578999999999999999999 9999999999998863 57889999999999999999999999999999999
Q ss_pred EEEeecCch
Q psy15676 262 HARGEEWNM 270 (309)
Q Consensus 262 ~V~~a~~~~ 270 (309)
.|.+++++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998643
No 104
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=7.9e-17 Score=128.82 Aligned_cols=80 Identities=20% Similarity=0.128 Sum_probs=75.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCc---eeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGK---VNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~---I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
...++|||+|||+++|+++|+.+|+.||. |..+.++.++. |+++|||||+|.+.++|.+|+. +||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45689999999999999999999999999 89999999986 9999999999999999999998 9999999999999
Q ss_pred EeecC
Q psy15676 264 RGEEW 268 (309)
Q Consensus 264 ~~a~~ 268 (309)
.+|..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=129.13 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=73.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC--ceeCCeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN--VLIDDRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g--~~i~gr~I~V 263 (309)
.+|.++|||+|||+++++++|+.+|++||.|.++.++.+ +|||||+|.+.++|.+|+..|++ ..++|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 567899999999999999999999999999999999864 69999999999999999998874 6899999999
Q ss_pred EeecCchhh
Q psy15676 264 RGEEWNMWK 272 (309)
Q Consensus 264 ~~a~~~~~~ 272 (309)
++|+++..+
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999875443
No 106
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=118.47 Aligned_cols=76 Identities=24% Similarity=0.429 Sum_probs=70.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHc-CCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM-DNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l-~g~~i~gr~I~V~ 264 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++. ++|||||+|.+.++|.+|+..| +|..++|++|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 45678999999999999999999999999999999975 4699999999999999999988 9999999999999
Q ss_pred eec
Q psy15676 265 GEE 267 (309)
Q Consensus 265 ~a~ 267 (309)
+|+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 107
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=7.6e-17 Score=127.89 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=72.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFG-KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG-~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
.+...+|||+|||+++++++|+.+|++|| .|..+.+.. +.++|||||+|.+.++|++|+..|||..++|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 899988853 3588999999999999999999999999999999999
Q ss_pred eecCch
Q psy15676 265 GEEWNM 270 (309)
Q Consensus 265 ~a~~~~ 270 (309)
++....
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 997654
No 108
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.2e-17 Score=125.52 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=74.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+..+|||+|||+++|+++|+.+|++||.+ .+.|+.++ +|+++|||||+|.+.++|++|+. +|+..++|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4566899999999999999999999999954 99999998 89999999999999999999994 799999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8754
No 109
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=122.98 Aligned_cols=83 Identities=23% Similarity=0.326 Sum_probs=76.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+++++++|+.+|+.|+ .+.++.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999874 677888888999999999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
|+++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987543
No 110
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=2.1e-17 Score=135.34 Aligned_cols=84 Identities=30% Similarity=0.449 Sum_probs=79.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++.++|||+|||+++|+++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCch
Q psy15676 267 EWNM 270 (309)
Q Consensus 267 ~~~~ 270 (309)
++..
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
No 111
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.5e-16 Score=127.05 Aligned_cols=81 Identities=11% Similarity=0.173 Sum_probs=73.0
Q ss_pred cEEEecCC----CCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecC----HHH----HHHHHH--HcCCce
Q psy15676 190 NVLFVCKL----NPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDN----PKS----CEDAYL--KMDNVL 255 (309)
Q Consensus 190 ~~lfV~nL----~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~----~~~----a~~Al~--~l~g~~ 255 (309)
..|||+|| |+.+++.+|+.+|++||.|.++.++.|+.||.++|||||+|.+ ..+ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 788888 789999
Q ss_pred eCCeeEEEEeecCch
Q psy15676 256 IDDRRIHARGEEWNM 270 (309)
Q Consensus 256 i~gr~I~V~~a~~~~ 270 (309)
|+|+.|+|.+.....
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999886533
No 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=5.4e-17 Score=144.52 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=77.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFG--KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG--~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..++|||+||++++|+++|+.+|++|| .|.+|.|+.|+.||+++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9754
No 113
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.7e-16 Score=124.89 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=72.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|+.+|++||.|..+.++ +|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+++..
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98754
No 114
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.6e-16 Score=121.35 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=71.2
Q ss_pred CCCCcEEEecCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNP-VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~-~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
.++.++|||+|||+ ++++++|+.+|++||.|..+.+. +|||||+|.+.++|.+|+..|||..++|+.|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 56789999999998 99999999999999999999882 6999999999999999999999999999999999
Q ss_pred eecCc
Q psy15676 265 GEEWN 269 (309)
Q Consensus 265 ~a~~~ 269 (309)
+++++
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99764
No 115
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=121.72 Aligned_cols=79 Identities=25% Similarity=0.419 Sum_probs=73.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC--CeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID--DRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~--gr~I~V 263 (309)
.++.++|||+|||+++++++|+.+|++||.|.++.+..+ +|||||+|.+.++|.+|+..|||..++ |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 466789999999999999999999999999999988643 689999999999999999999999999 999999
Q ss_pred EeecCch
Q psy15676 264 RGEEWNM 270 (309)
Q Consensus 264 ~~a~~~~ 270 (309)
++|+++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998753
No 116
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=124.85 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC--ceeCCeeEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN--VLIDDRRIH 262 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g--~~i~gr~I~ 262 (309)
..+|.++|||+|||+.+++++|+.+|++||.|.++.++.+ +|||||+|.+.++|.+|+..|++ ..++|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567899999999999999999999999999999988753 69999999999999999998865 469999999
Q ss_pred EEeecCch
Q psy15676 263 ARGEEWNM 270 (309)
Q Consensus 263 V~~a~~~~ 270 (309)
|++|+.+.
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99998644
No 117
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=8.8e-17 Score=132.02 Aligned_cols=80 Identities=19% Similarity=0.104 Sum_probs=75.5
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCc---eeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGK---VNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~---I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
...++|||+|||+++|+++|+.+|++||. |..+.++.++. |+++|||||+|.+.++|.+|+. +||..++|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45689999999999999999999999999 89999999987 9999999999999999999998 9999999999999
Q ss_pred EeecC
Q psy15676 264 RGEEW 268 (309)
Q Consensus 264 ~~a~~ 268 (309)
.+|..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99853
No 118
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=119.44 Aligned_cols=77 Identities=21% Similarity=0.441 Sum_probs=72.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+++++++|+.+|++||.|..+.++ +|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999986 58999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
++++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98654
No 119
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=9.8e-17 Score=126.81 Aligned_cols=80 Identities=19% Similarity=0.347 Sum_probs=74.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
..+|||+|||+++|+++|+.+|+.| .|..+.|+.++. |+++|||||+|.+.++|.+|+ .+||..++|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999975 999999999999999999999 6899999999999998875
Q ss_pred chh
Q psy15676 269 NMW 271 (309)
Q Consensus 269 ~~~ 271 (309)
..|
T Consensus 93 ~~~ 95 (109)
T 2dnn_A 93 RQW 95 (109)
T ss_dssp HHH
T ss_pred cch
Confidence 544
No 120
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=3.9e-18 Score=135.57 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=80.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeE--------EEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNC--------CEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD 258 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~--------v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g 258 (309)
++.++|||+|||+.+++++|+.+|++||.|.. +.++.++.+|.++|||||+|.+.++|.+|+..|||..++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred eeEEEEeecCchh
Q psy15676 259 RRIHARGEEWNMW 271 (309)
Q Consensus 259 r~I~V~~a~~~~~ 271 (309)
+.|.|.+|+++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987543
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=121.45 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=71.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.+..++|||+|||+.+++++|+.+|++||.|. +.++. +.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999996 66664 46789999999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|+++
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-16 Score=122.67 Aligned_cols=76 Identities=13% Similarity=0.258 Sum_probs=71.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+..++|||+|||+++++++|+.+|++||.|.++.+. .++|||||+|.+.++|.+|+..|||..++|+.|+|.+|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 356899999999999999999999999999999986 46799999999999999999999999999999999998
Q ss_pred cC
Q psy15676 267 EW 268 (309)
Q Consensus 267 ~~ 268 (309)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.6e-16 Score=122.71 Aligned_cols=77 Identities=27% Similarity=0.258 Sum_probs=72.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC-----eeE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD-----RRI 261 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g-----r~I 261 (309)
.+.++|||+|||+++++++|+.+|++||.|..+.++.+ |||||+|.+.++|.+|+..|||..++| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999865 899999999999999999999999999 999
Q ss_pred EEEeecCch
Q psy15676 262 HARGEEWNM 270 (309)
Q Consensus 262 ~V~~a~~~~ 270 (309)
.|.+|++..
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998743
No 124
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=9.2e-17 Score=124.49 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=75.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.+.++|||+|||+++++++|+.+|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+. +|..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999998 99999999999999999999997 999999999999998
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
.++
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 753
No 125
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=124.67 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=71.1
Q ss_pred CCCCcEEEecCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC--ceeCCeeEE
Q psy15676 186 APPENVLFVCKLNP-VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN--VLIDDRRIH 262 (309)
Q Consensus 186 ~~~~~~lfV~nL~~-~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g--~~i~gr~I~ 262 (309)
.+|.++|||+|||+ .+|+++|+.+|++||.|.++.++.+ +|||||+|.+.++|..|+..|++ ..++|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45788999999999 9999999999999999999999764 48999999999999999998886 569999999
Q ss_pred EEeecCc
Q psy15676 263 ARGEEWN 269 (309)
Q Consensus 263 V~~a~~~ 269 (309)
|++|+..
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999853
No 126
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=2.7e-16 Score=134.63 Aligned_cols=84 Identities=25% Similarity=0.327 Sum_probs=79.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|..+|++||.|..|.++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 98644
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.4e-16 Score=128.75 Aligned_cols=82 Identities=26% Similarity=0.324 Sum_probs=78.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++..+|||+|||+.+++++|..+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|++
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q psy15676 266 EE 267 (309)
Q Consensus 266 a~ 267 (309)
|+
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=122.28 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467899999999999999999999999988766 34789999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97643
No 129
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-17 Score=127.30 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=76.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCc---eeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGK---VNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~---I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~ 262 (309)
....++|||+|||+++|+++|+.+|+.||. |..+.++.++. |+++|||||+|.+.++|.+|+. ++|..++|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred EEeecC
Q psy15676 263 ARGEEW 268 (309)
Q Consensus 263 V~~a~~ 268 (309)
|.+|..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999864
No 130
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=121.28 Aligned_cols=79 Identities=18% Similarity=0.382 Sum_probs=73.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
..++.++|||+|||+.+++++|+.+|++||.|..+.+.. ++|||||+|.+.++|.+|+..|+|..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 356678999999999999999999999999999999874 36899999999999999999999999999999999
Q ss_pred eecCc
Q psy15676 265 GEEWN 269 (309)
Q Consensus 265 ~a~~~ 269 (309)
+++++
T Consensus 85 ~a~~~ 89 (99)
T 2cpj_A 85 FACHS 89 (99)
T ss_dssp ESSCC
T ss_pred EcCCC
Confidence 99864
No 131
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=126.09 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=73.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+.++|||+|||+.+++++|+.+|++||.|..+.++. ++|||||+|.+.++|.+|+..|||..++|+.|.|++|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998863 56899999999999999999999999999999999998
Q ss_pred Cchhhcc
Q psy15676 268 WNMWKRR 274 (309)
Q Consensus 268 ~~~~~~r 274 (309)
...+...
T Consensus 83 ~~~~~~~ 89 (111)
T 1whx_A 83 IGVFGAA 89 (111)
T ss_dssp TTTTCCC
T ss_pred CCccCCC
Confidence 7665543
No 132
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=123.14 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=72.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++.++|||+|||+.+++++|+.+|++||.|..+.++.+ +|||||+|.+.++|.+|+..|+|..++|+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45689999999999999999999999999999999865 689999999999999999999999999999999999
Q ss_pred cCch
Q psy15676 267 EWNM 270 (309)
Q Consensus 267 ~~~~ 270 (309)
+++.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=5.8e-16 Score=128.69 Aligned_cols=82 Identities=26% Similarity=0.530 Sum_probs=78.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+.++|||+|||+++++++|..+|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35899999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred Cc
Q psy15676 268 WN 269 (309)
Q Consensus 268 ~~ 269 (309)
+.
T Consensus 81 ~~ 82 (167)
T 1fxl_A 81 PS 82 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 134
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.2e-16 Score=118.25 Aligned_cols=80 Identities=25% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhcC--CceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCee
Q psy15676 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRF--GKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR 260 (309)
Q Consensus 183 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~f--G~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~ 260 (309)
.+..++.++|||+|||+.+++++|+.+|++| |.|..+.+. +|||||+|.+.++|.+|+..|||..++|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445677899999999999999999999999 899888763 579999999999999999999999999999
Q ss_pred EEEEeecCch
Q psy15676 261 IHARGEEWNM 270 (309)
Q Consensus 261 I~V~~a~~~~ 270 (309)
|.|.+|+++.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=4.8e-16 Score=129.66 Aligned_cols=82 Identities=26% Similarity=0.446 Sum_probs=78.7
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+.++|||+|||+++++++|..+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Cc
Q psy15676 268 WN 269 (309)
Q Consensus 268 ~~ 269 (309)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 136
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.5e-16 Score=120.94 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=70.6
Q ss_pred CCCCcEEEecCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNP-VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~-~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
.++.++|||+|||+ .+++++|+.+|++||.|..+.+. +|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 46789999999999 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred eecCch
Q psy15676 265 GEEWNM 270 (309)
Q Consensus 265 ~a~~~~ 270 (309)
+++++.
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 998643
No 137
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.9e-16 Score=116.48 Aligned_cols=77 Identities=22% Similarity=0.482 Sum_probs=71.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|+.+|++||.|..+.++ ++||||+|.+.++|.+|+..|||..++|+.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999986 34999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
++++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98653
No 138
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=8.3e-16 Score=119.44 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=71.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++|+++|+.+|++||.|..+.++ +|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3567899999999999999999999999999999885 46999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+.+..
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 98644
No 139
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=122.67 Aligned_cols=76 Identities=26% Similarity=0.409 Sum_probs=71.6
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
++|||+|||+++|+++|+.+|++||.|.++.++.+ ++|||||+|.+.++|.+|+..|+|..++|+.|.|.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 7899999999999999999999999999999999999864
Q ss_pred h
Q psy15676 270 M 270 (309)
Q Consensus 270 ~ 270 (309)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=119.26 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=70.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCc-eeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC-ceeCCeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGK-VNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN-VLIDDRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~-I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g-~~i~gr~I~V 263 (309)
.++.++|||+|||+++++++|+.+|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..++|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6555552 579999999999999999999999 9999999999
Q ss_pred EeecCchh
Q psy15676 264 RGEEWNMW 271 (309)
Q Consensus 264 ~~a~~~~~ 271 (309)
.+|+++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987543
No 141
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.3e-16 Score=116.73 Aligned_cols=77 Identities=21% Similarity=0.401 Sum_probs=71.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+.+++++|+.+|++||.|..+.++ ++||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999986 34999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
+++..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98753
No 142
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=7.9e-16 Score=121.00 Aligned_cols=75 Identities=25% Similarity=0.475 Sum_probs=70.3
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNPV-TSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~-~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
.++.++|||+|||+. +++++|+.+|++||.|..+.+ ++|||||+|.+.++|.+|+..|+|..++|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 445689999999999 999999999999999999988 57999999999999999999999999999999999
Q ss_pred eecC
Q psy15676 265 GEEW 268 (309)
Q Consensus 265 ~a~~ 268 (309)
+++.
T Consensus 96 ~a~~ 99 (110)
T 1wf1_A 96 MAGE 99 (110)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9975
No 143
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=1.2e-15 Score=127.96 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=77.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
++..+|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|++|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=4.6e-16 Score=129.03 Aligned_cols=79 Identities=24% Similarity=0.416 Sum_probs=73.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|+.+|++||.|.++.++.+ ++|||||+|.+.++|.+|+..|||..++|++|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|+++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.2e-15 Score=115.73 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=71.9
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 184 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
....+.++|||+|| ++++++|+.+|++||.|..+.+. .++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33456789999996 89999999999999999999883 56799999999999999999999999999999999
Q ss_pred EeecCchh
Q psy15676 264 RGEEWNMW 271 (309)
Q Consensus 264 ~~a~~~~~ 271 (309)
.+|+++..
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99987543
No 146
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-16 Score=123.65 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcC--CceeCCeeEE
Q psy15676 186 APPENVLFVCKLNPV-TSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD--NVLIDDRRIH 262 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~-~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~--g~~i~gr~I~ 262 (309)
.+|.++|||+|||++ +++++|+.+|++||.|.++.+++ ++|||||+|.+.++|..|+..|+ +..++|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999863 47999999999999999999886 4679999999
Q ss_pred EEeecCc
Q psy15676 263 ARGEEWN 269 (309)
Q Consensus 263 V~~a~~~ 269 (309)
|++|+..
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9999764
No 147
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=126.69 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=73.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCce----eEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKV----NCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I----~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~ 262 (309)
.+..+|||+|||+++|+++|+.+|++||.| ..|.|+.+. +|+++|||||+|.+.++|.+|+.. |+..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 356899999999999999999999999875 689999985 899999999999999999999986 99999999999
Q ss_pred EEeecC
Q psy15676 263 ARGEEW 268 (309)
Q Consensus 263 V~~a~~ 268 (309)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 148
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.1e-16 Score=117.41 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=72.1
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEE-EEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCC-EVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v-~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
...++|||+|||+.+++++|+.+|++||.|..+ .++.++.+| .|||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 588776554 399999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9865
No 149
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=2.3e-15 Score=129.00 Aligned_cols=85 Identities=20% Similarity=0.405 Sum_probs=80.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+.+++++|..+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCch
Q psy15676 266 EEWNM 270 (309)
Q Consensus 266 a~~~~ 270 (309)
|.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98653
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=1.6e-15 Score=131.67 Aligned_cols=83 Identities=25% Similarity=0.441 Sum_probs=79.6
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+.++|||+|||+++++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cch
Q psy15676 268 WNM 270 (309)
Q Consensus 268 ~~~ 270 (309)
+..
T Consensus 204 ~~~ 206 (216)
T 2qfj_A 204 TPP 206 (216)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 151
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=115.71 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=62.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc--eeCCeeEE
Q psy15676 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV--LIDDRRIH 262 (309)
Q Consensus 185 ~~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~--~i~gr~I~ 262 (309)
..++.++|||+|||+++|+++|+.+|++||.|.++.++.+ ++|||||+|.+.++|.+ ++|. .+.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3567899999999999999999999999999999999864 78999999999999883 4554 45699999
Q ss_pred EEeecCc
Q psy15676 263 ARGEEWN 269 (309)
Q Consensus 263 V~~a~~~ 269 (309)
|.+|.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9999764
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=115.73 Aligned_cols=77 Identities=22% Similarity=0.278 Sum_probs=70.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
..++|||+|||+++++++|+.+|++||.|.+| +.++.+|. ||||+|.+.++|.+|+. |||..++|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 66766665 99999999999999999 99999999999999887
Q ss_pred Cch
Q psy15676 268 WNM 270 (309)
Q Consensus 268 ~~~ 270 (309)
...
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 153
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.3e-16 Score=122.61 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=73.0
Q ss_pred CCCCcEEEe--cCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee-----CC
Q psy15676 186 APPENVLFV--CKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI-----DD 258 (309)
Q Consensus 186 ~~~~~~lfV--~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i-----~g 258 (309)
.+|..+||| |||++++++++|+.+|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 456789999 77999999999999999999999988753 369999999999999999999999988 78
Q ss_pred eeEEEEeecCchhhc
Q psy15676 259 RRIHARGEEWNMWKR 273 (309)
Q Consensus 259 r~I~V~~a~~~~~~~ 273 (309)
++|.|.|++.-.|..
T Consensus 96 ~~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSG 110 (114)
T ss_dssp EECEEEEESCCCCSS
T ss_pred cEEEEEecccCcccC
Confidence 999999998766543
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=8.4e-16 Score=124.53 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=72.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCcee--EEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVN--CCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~--~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
..+..+|||+|||+++|+++|+.+|++| .|. .|.|+.|+. |+++|||||+|.+.++|.+|+. +++..|+|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3456899999999999999999999999 566 899999986 9999999999999999999997 4889999999999
Q ss_pred EeecC
Q psy15676 264 RGEEW 268 (309)
Q Consensus 264 ~~a~~ 268 (309)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98854
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=2.3e-15 Score=128.72 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=75.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+.++|||+|||+++|+++|+.+|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+.. +|..++|+.|.|.+|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 558999999999999999999999999999999999998999999999999999999999975 8999999999999998
Q ss_pred Cchh
Q psy15676 268 WNMW 271 (309)
Q Consensus 268 ~~~~ 271 (309)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7543
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=2.3e-15 Score=128.74 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=77.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++|+++|..+|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+.. +|..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999975 99999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
+.+.
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8754
No 157
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=6.3e-16 Score=128.99 Aligned_cols=80 Identities=24% Similarity=0.419 Sum_probs=76.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
..+|||+|||+++++++|..+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+. ++|..++|++|.|.+|.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5799999999999999999999999999999999998899999999999999999999997 899999999999999976
Q ss_pred c
Q psy15676 269 N 269 (309)
Q Consensus 269 ~ 269 (309)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=2.2e-15 Score=113.79 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=69.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+.++|||+|||+.+++++|+.+|++| .|.++.+. .++|||||+|.+.++|.+|+..|||..++|++|.|++|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56899999999999999999999999 99999883 578999999999999999999999999999999999997
Q ss_pred Cc
Q psy15676 268 WN 269 (309)
Q Consensus 268 ~~ 269 (309)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 159
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=4e-15 Score=116.74 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=78.0
Q ss_pred CCCCcEEEecCCCC-----CCCHHHHHHHHhcCCceeEEEEeeeCCC-CCcccEEEEEecCHHHHHHHHHHcCCceeCCe
Q psy15676 186 APPENVLFVCKLNP-----VTSDDDLEIIFSRFGKVNCCEVIRDKVT-GDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDR 259 (309)
Q Consensus 186 ~~~~~~lfV~nL~~-----~~te~~L~~~F~~fG~I~~v~i~~d~~t-g~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr 259 (309)
..|.++|+|.||.. +-++++|+..|++||.|.++.|+.++.+ +.++|||||+|.+.++|.+|+..|||..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35778999999963 2378999999999999999999998754 68999999999999999999999999999999
Q ss_pred eEEEEeecCchhhcc
Q psy15676 260 RIHARGEEWNMWKRR 274 (309)
Q Consensus 260 ~I~V~~a~~~~~~~r 274 (309)
.|.|.++....|..+
T Consensus 85 ~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 85 VVKACFYNLDKFRVL 99 (105)
T ss_dssp ECEEEECCHHHHHTT
T ss_pred EEEEEEcCHHHhhhh
Confidence 999999987666554
No 160
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=3.4e-16 Score=128.99 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=74.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
...++|||+|||+++|+++|+.+|++|| |.+|.|+.++. |+++|||||+|.+.++|.+|+ .+|+..++|+.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4568999999999999999999999999 67999999985 999999999999999999999 78999999999999998
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=114.68 Aligned_cols=73 Identities=27% Similarity=0.247 Sum_probs=65.2
Q ss_pred CCCcE-EEecCCCCCCCHHH----HHHHHhcC-CceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCee
Q psy15676 187 PPENV-LFVCKLNPVTSDDD----LEIIFSRF-GKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR 260 (309)
Q Consensus 187 ~~~~~-lfV~nL~~~~te~~----L~~~F~~f-G~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~ 260 (309)
+|..| |||+|||+.+++++ |..+|++| |.|.++ || |+|||.|.+.++|..|++.|+|..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 44555 99999999999988 56899999 599887 44 99999999999999999999999999999
Q ss_pred EEEEeecCc
Q psy15676 261 IHARGEEWN 269 (309)
Q Consensus 261 I~V~~a~~~ 269 (309)
|+|+||+.+
T Consensus 76 i~v~~A~~~ 84 (96)
T 2diu_A 76 IIVSFTPKN 84 (96)
T ss_dssp CEEESSCCS
T ss_pred EEEEecCCC
Confidence 999999853
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.59 E-value=4.2e-15 Score=130.15 Aligned_cols=79 Identities=28% Similarity=0.503 Sum_probs=74.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
..+|||+|||+.+|+++|+.+|++||.|..+.++.+. +.++|||||+|.+.++|.+|+..|||..|+|++|.|.+|++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4689999999999999999999999999999999985 45899999999999999999999999999999999999975
Q ss_pred c
Q psy15676 269 N 269 (309)
Q Consensus 269 ~ 269 (309)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 3
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=5.5e-15 Score=123.17 Aligned_cols=80 Identities=26% Similarity=0.511 Sum_probs=76.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC--eeEEEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD--RRIHAR 264 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g--r~I~V~ 264 (309)
.+.++|||+|||+.+++++|+.+|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..++| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999999899999999999999999999999999999988 999999
Q ss_pred ee
Q psy15676 265 GE 266 (309)
Q Consensus 265 ~a 266 (309)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=118.80 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=68.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCC---CCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVT---GDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~t---g~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
.+.++|||+|||+++++++|+.+|++||.|. +.++.+..+ |.++|||||+|.+.++|.+|+..|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999999999999999999999999 888888777 7999999999999999999999884 366776666
Q ss_pred Eeec
Q psy15676 264 RGEE 267 (309)
Q Consensus 264 ~~a~ 267 (309)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6.6e-15 Score=122.12 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=73.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCc
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWN 269 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~ 269 (309)
++|||+|||+++|+++|..+|++||.|.++.++.++ +|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999987 4789999999999999999999999999999999999998653
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=8.7e-15 Score=121.51 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=74.6
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCee--EEEEe
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR--IHARG 265 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~--I~V~~ 265 (309)
+..+|||+|||+.+++++|..+|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..++|+. |.|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4679999999999999999999999999999999999989999999999999999999999999999999965 88887
Q ss_pred e
Q psy15676 266 E 266 (309)
Q Consensus 266 a 266 (309)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=7.9e-15 Score=128.27 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=72.5
Q ss_pred CCCcEEEecCCC-CCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 187 PPENVLFVCKLN-PVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 187 ~~~~~lfV~nL~-~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
+++++|||+||| +.+++++|..+|++||.|.++.++.+ ++|||||+|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 567899999999 79999999999999999999999764 479999999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
|+.+
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 9743
No 168
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=7.3e-15 Score=118.01 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=70.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|| ++++++|+.+|++||.|.++.+. .++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999996 69999999999999999999884 5779999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
|++...
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987543
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=7.7e-15 Score=127.37 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=75.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
.++|||+|||+++|+++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 47999999999999999999999999999999999998999999999999999999999999999999999999998875
Q ss_pred ch
Q psy15676 269 NM 270 (309)
Q Consensus 269 ~~ 270 (309)
..
T Consensus 108 ~~ 109 (216)
T 2qfj_A 108 IG 109 (216)
T ss_dssp CG
T ss_pred cc
Confidence 43
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=1.6e-14 Score=117.45 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=68.6
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccE-EEEEecCHHHHHHHHHHcCCceeCC--eeEEEEee
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQY-AFVEFDNPKSCEDAYLKMDNVLIDD--RRIHARGE 266 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~-aFV~F~~~~~a~~Al~~l~g~~i~g--r~I~V~~a 266 (309)
-.|||+||++.+|+++|..+|++||.|.++.+... ++|| |||+|.+.++|..|+..|||..|.| +.|+|+||
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 47789999999999999999999999999988753 3577 9999999999999999999999988 99999999
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
+..
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 864
No 171
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=3.9e-15 Score=118.28 Aligned_cols=74 Identities=28% Similarity=0.293 Sum_probs=66.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCee-----EE
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRR-----IH 262 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~-----I~ 262 (309)
..++|||+|||+++++++|..+|++||.|..+.++.+ |||||+|.+.++|++|+..|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999999764 89999999999999999999999999998 67
Q ss_pred EEeecC
Q psy15676 263 ARGEEW 268 (309)
Q Consensus 263 V~~a~~ 268 (309)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 766654
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=8e-15 Score=122.23 Aligned_cols=79 Identities=24% Similarity=0.460 Sum_probs=74.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+.++|||+|||+++|+++|+.+|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 45899999999999999999999999999999999999999999999999999999999998 4689999999999886
Q ss_pred C
Q psy15676 268 W 268 (309)
Q Consensus 268 ~ 268 (309)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 5
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=1.5e-14 Score=121.16 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=74.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCC--CcccEEEEEecCHHHHHHHHHHcCCceeC---CeeEE
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTG--DSLQYAFVEFDNPKSCEDAYLKMDNVLID---DRRIH 262 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg--~skG~aFV~F~~~~~a~~Al~~l~g~~i~---gr~I~ 262 (309)
+.++|||+|||+++|+++|+.+|++||.|.++.++.++.+| .++|||||+|.+.++|.+|+..|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999887 89999999999999999999999998776 67788
Q ss_pred EEeecC
Q psy15676 263 ARGEEW 268 (309)
Q Consensus 263 V~~a~~ 268 (309)
+.++.+
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 887764
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=1.1e-14 Score=109.14 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=66.1
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcC----C-------ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCce
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRF----G-------KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVL 255 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~f----G-------~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~ 255 (309)
.+.++|||+|||+++++++|+.+|++| | .|.++.+..+ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 8999988643 699999999999999999 999999
Q ss_pred eCCeeEEEEe
Q psy15676 256 IDDRRIHARG 265 (309)
Q Consensus 256 i~gr~I~V~~ 265 (309)
++|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 175
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=1.6e-14 Score=121.73 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=69.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC--eeEEEEeec
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD--RRIHARGEE 267 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g--r~I~V~~a~ 267 (309)
.+|||+||++.+|+++|+.+|++||.|.++.+... .++|||||+|.+.++|..|+..|||..|.| +.|+|++|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 47899999999999999999999999999998643 357899999999999999999999999965 999999998
Q ss_pred Cc
Q psy15676 268 WN 269 (309)
Q Consensus 268 ~~ 269 (309)
+.
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=1.6e-14 Score=121.00 Aligned_cols=78 Identities=22% Similarity=0.416 Sum_probs=73.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC---CeeEEEE
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID---DRRIHAR 264 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~---gr~I~V~ 264 (309)
+.++|||+|||+.+|+++|+.+|++||.|.++.++.+. +|.++|||||+|.+.++|.+|+..|||..+. |++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56899999999999999999999999999999999986 5999999999999999999999999998776 4999999
Q ss_pred ee
Q psy15676 265 GE 266 (309)
Q Consensus 265 ~a 266 (309)
||
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 97
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=3.7e-14 Score=114.49 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=68.5
Q ss_pred CCCCcE--EEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccE-EEEEecCHHHHHHHHHHcCCceeCC--ee
Q psy15676 186 APPENV--LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQY-AFVEFDNPKSCEDAYLKMDNVLIDD--RR 260 (309)
Q Consensus 186 ~~~~~~--lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~-aFV~F~~~~~a~~Al~~l~g~~i~g--r~ 260 (309)
.+|..+ |||+||++.+++++|..+|++||.|.++.+.. + .|| |||+|.+.++|..|+..|||..|.| +.
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 345554 67999999999999999999999999999864 2 286 9999999999999999999999987 68
Q ss_pred EEEEeecCc
Q psy15676 261 IHARGEEWN 269 (309)
Q Consensus 261 I~V~~a~~~ 269 (309)
|+|++|++.
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999999864
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.3e-15 Score=111.06 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=66.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.+.++|||+|||+++++++|+.+|++||.|.++.++.+ ++|||||+|.+.++|++|.. .+..++|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999998754 78999999999999976432 235669999999999
Q ss_pred cCch
Q psy15676 267 EWNM 270 (309)
Q Consensus 267 ~~~~ 270 (309)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=2.3e-14 Score=120.64 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=71.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
.+.++|||+|||+.+++++|+.+|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|++|
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356899999999999999999999999988765 457999999999999999999999999999999999999999
Q ss_pred cCc
Q psy15676 267 EWN 269 (309)
Q Consensus 267 ~~~ 269 (309)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.52 E-value=3.8e-14 Score=122.81 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=71.1
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEW 268 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~ 268 (309)
++|||+|||+++|+++|..+|++||.|.++.++++. +|.++|||||+|.+.++|.+|+..+ +..++|+.|.|.+++.
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 799999999999999999999999999999999987 5999999999999999999999754 5699999999997653
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=5.2e-14 Score=127.70 Aligned_cols=81 Identities=25% Similarity=0.359 Sum_probs=75.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHH----HHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLE----IIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~----~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I 261 (309)
.++.++|||+|||+++++++|+ .+|++||.|.+|.++. +|.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4578999999999999999966 8999999999998875 78899999999999999999999999999999999
Q ss_pred EEEeecCc
Q psy15676 262 HARGEEWN 269 (309)
Q Consensus 262 ~V~~a~~~ 269 (309)
.|.++...
T Consensus 83 ~v~~a~~~ 90 (282)
T 3pgw_A 83 RIQYAKTD 90 (282)
T ss_pred EEEEeccC
Confidence 99999754
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.51 E-value=2.9e-14 Score=130.06 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=76.4
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCC-CCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 186 APPENVLFVCKLNPV-TSDDDLEIIFSRFGKVNCCEVIRDKV-TGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~-~te~~L~~~F~~fG~I~~v~i~~d~~-tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
..+..+|||+|||+. +++++|..+|++||.|..+.++.+.. ||.++|||||+|.+.++|.+|+ .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345689999999999 99999999999999999999999876 6999999999999999999999 99999999999999
Q ss_pred EeecCc
Q psy15676 264 RGEEWN 269 (309)
Q Consensus 264 ~~a~~~ 269 (309)
.+|+++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999864
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.51 E-value=6.8e-14 Score=127.05 Aligned_cols=84 Identities=21% Similarity=0.367 Sum_probs=79.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.++.++|||+|||+++++++|..+|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
+.+.
T Consensus 172 a~~~ 175 (284)
T 3smz_A 172 TDAG 175 (284)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 9764
No 184
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=1.4e-13 Score=124.21 Aligned_cols=82 Identities=29% Similarity=0.353 Sum_probs=74.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcC-CceeC---CeeE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD-NVLID---DRRI 261 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~-g~~i~---gr~I 261 (309)
..+..+|||+|||+.+|+++|..+|+.||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..|| |..+. |++|
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 346789999999999999999999999999999999999 589999999999999999999999994 55555 9999
Q ss_pred EEEeecC
Q psy15676 262 HARGEEW 268 (309)
Q Consensus 262 ~V~~a~~ 268 (309)
.|.++.+
T Consensus 172 ~v~~~~~ 178 (261)
T 3sde_A 172 IVEPMEQ 178 (261)
T ss_dssp EEEECCC
T ss_pred EEeeccc
Confidence 9998864
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.50 E-value=8.3e-14 Score=126.48 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=78.5
Q ss_pred CCCcEEEecCCCCCC-CHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 187 PPENVLFVCKLNPVT-SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~-te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
.+.++|||+|||+++ ++++|..+|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 467899999999995 999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred ecCchh
Q psy15676 266 EEWNMW 271 (309)
Q Consensus 266 a~~~~~ 271 (309)
+.++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 987554
No 186
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=9.7e-14 Score=108.74 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCCcEEEecCCC--CCCC--------HHHHHHHHhcCCceeEEEEeeeCCC--CCcccEEEEEecCHHHHHHHHHHcCC
Q psy15676 186 APPENVLFVCKLN--PVTS--------DDDLEIIFSRFGKVNCCEVIRDKVT--GDSLQYAFVEFDNPKSCEDAYLKMDN 253 (309)
Q Consensus 186 ~~~~~~lfV~nL~--~~~t--------e~~L~~~F~~fG~I~~v~i~~d~~t--g~skG~aFV~F~~~~~a~~Al~~l~g 253 (309)
+.|.+.|.+.|+- .... +++|+..|++||.|.++.|+++..+ +.++|||||+|.+.++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 3577899999982 2332 3689999999999999999988764 46899999999999999999999999
Q ss_pred ceeCCeeEEEEeecCchhhc
Q psy15676 254 VLIDDRRIHARGEEWNMWKR 273 (309)
Q Consensus 254 ~~i~gr~I~V~~a~~~~~~~ 273 (309)
..++||.|+|.++....|..
T Consensus 82 ~~f~GR~i~v~~~~~~~f~~ 101 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSYHR 101 (105)
T ss_dssp CEETTEECEEEEECHHHHHT
T ss_pred CEeCCCEEEEEEeCHHHHhh
Confidence 99999999999997665544
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=6.8e-14 Score=123.76 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=73.6
Q ss_pred CCCCcEEEecCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 186 APPENVLFVCKLNP-VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~-~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
.++.++|||+|||+ ++++++|+.+|++||.|.++.++.++ +|||||+|.+.++|.+|+..|+|..++|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 46678999999999 99999999999999999999998764 6899999999999999999999999999999999
Q ss_pred eecCc
Q psy15676 265 GEEWN 269 (309)
Q Consensus 265 ~a~~~ 269 (309)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99753
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.47 E-value=2.1e-14 Score=120.87 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=73.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++++++|+.+|+.||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|||..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 456789999999999999999999999998766 34455567899999999999999999999 5999999999999999
Q ss_pred ecCc
Q psy15676 266 EEWN 269 (309)
Q Consensus 266 a~~~ 269 (309)
+.+.
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8753
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=8.3e-14 Score=124.52 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=70.3
Q ss_pred CCCcEEEecCCCCCC---------CHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee-
Q psy15676 187 PPENVLFVCKLNPVT---------SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI- 256 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~---------te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i- 256 (309)
.+.++|||+||++.+ ++++|+.+|++||.|.+|.++. ++|||||+|.+.++|+.|+..|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 467899999999998 7999999999999999999974 479999999999999999999999999
Q ss_pred -----------CCeeEEEEeecCc
Q psy15676 257 -----------DDRRIHARGEEWN 269 (309)
Q Consensus 257 -----------~gr~I~V~~a~~~ 269 (309)
+|+.|.|.+|..+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccccCCCCEEEEEEccCC
Confidence 8999999999864
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=2.6e-13 Score=123.02 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=71.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC-CeeEEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID-DRRIHAR 264 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~-gr~I~V~ 264 (309)
.++.++|||+|||+.+++++|+.+|++||.|.++.++.++ +|||||+|.+.++|.+|+..|||..++ |+.|+|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4567899999999999999999999999999999998543 589999999999999999999999999 9999999
Q ss_pred eec
Q psy15676 265 GEE 267 (309)
Q Consensus 265 ~a~ 267 (309)
||+
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 985
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.5e-13 Score=105.20 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=69.4
Q ss_pred CCCCcEEEecCCCCCCC-----------HHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc
Q psy15676 186 APPENVLFVCKLNPVTS-----------DDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV 254 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~t-----------e~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~ 254 (309)
..+.++|+|.||..... +++|+.+|++||.|..+.| .++ .++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45678999999954432 5799999999999999965 444 37999999999999999999999999
Q ss_pred eeCCeeEEEEeecCc
Q psy15676 255 LIDDRRIHARGEEWN 269 (309)
Q Consensus 255 ~i~gr~I~V~~a~~~ 269 (309)
.++|+.|.|.++.+.
T Consensus 88 ~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 88 WFGGRQITAQAWDGT 102 (112)
T ss_dssp EETTEECEEEECCSC
T ss_pred EECCcEEEEEEeCCC
Confidence 999999999999763
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.44 E-value=1.7e-13 Score=119.71 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=70.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCce--eEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCe----
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKV--NCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDR---- 259 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I--~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr---- 259 (309)
.+|..+|||+|||+++|+++|+.+|++||.| .++.++.+. |.++|||||+|.+.++|.+|+..|||..|+|.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 4577899999999999999999999999999 899988775 55679999999999999999999999999986
Q ss_pred eEEEEee
Q psy15676 260 RIHARGE 266 (309)
Q Consensus 260 ~I~V~~a 266 (309)
++.|.+|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 5777765
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.43 E-value=3.1e-13 Score=121.88 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=71.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEe
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARG 265 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~ 265 (309)
..+.++|||+|||+++|+++|..+|++||.|..+.+.. ++|||||+|.+.++|.+|+..++|..++|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34567999999999999999999999999999998853 469999999999999999999999999999999999
Q ss_pred ecC
Q psy15676 266 EEW 268 (309)
Q Consensus 266 a~~ 268 (309)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 874
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=118.06 Aligned_cols=76 Identities=21% Similarity=0.366 Sum_probs=71.2
Q ss_pred CcEEEecCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeec
Q psy15676 189 ENVLFVCKLNP-VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEE 267 (309)
Q Consensus 189 ~~~lfV~nL~~-~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~ 267 (309)
+++|||+|||+ .+++++|..+|++||.|.++.++.++ +|||||+|.+.++|.+|+..|+|..++|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998764 6899999999999999999999999999999999987
Q ss_pred Cc
Q psy15676 268 WN 269 (309)
Q Consensus 268 ~~ 269 (309)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=3.9e-13 Score=115.49 Aligned_cols=79 Identities=18% Similarity=0.373 Sum_probs=72.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC-CeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFG-KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID-DRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG-~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~-gr~I~V 263 (309)
.+|.++|||+|||+.+++++|+.+|++|| .|..+.++.+ ++|||||+|.+.++|.+|+..|||..++ |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 46789999999999999999999999999 9999998653 3699999999999999999999999999 999999
Q ss_pred EeecCc
Q psy15676 264 RGEEWN 269 (309)
Q Consensus 264 ~~a~~~ 269 (309)
.|+++.
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999764
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=3.9e-13 Score=107.56 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=75.1
Q ss_pred CCCcEEEecCCCCC-----CCHHHHHHHHhcCCceeEEEEeeeCC----CCCcccEEEEEecCHHHHHHHHHHcCCceeC
Q psy15676 187 PPENVLFVCKLNPV-----TSDDDLEIIFSRFGKVNCCEVIRDKV----TGDSLQYAFVEFDNPKSCEDAYLKMDNVLID 257 (309)
Q Consensus 187 ~~~~~lfV~nL~~~-----~te~~L~~~F~~fG~I~~v~i~~d~~----tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~ 257 (309)
+|+++|++.|+-.. --+++|+..|++||.|.++.|+.+.. ++.++|||||+|.+.++|.+|+..|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 36789999998421 23689999999999999999999864 4678899999999999999999999999999
Q ss_pred CeeEEEEeecCchhhc
Q psy15676 258 DRRIHARGEEWNMWKR 273 (309)
Q Consensus 258 gr~I~V~~a~~~~~~~ 273 (309)
||.|.|.++....|..
T Consensus 98 GR~i~v~~~~~~~f~~ 113 (118)
T 3ue2_A 98 GRKVVAEVYDQERFDN 113 (118)
T ss_dssp TEECEEEEECHHHHHT
T ss_pred CcEEEEEEcChHhccc
Confidence 9999999997655543
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=7.9e-13 Score=116.85 Aligned_cols=79 Identities=18% Similarity=0.373 Sum_probs=72.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC-CeeEEE
Q psy15676 186 APPENVLFVCKLNPVTSDDDLEIIFSRFG-KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID-DRRIHA 263 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~~te~~L~~~F~~fG-~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~-gr~I~V 263 (309)
.++.++|||+|||+.+++++|+.+|++|| .|..+.++.+ ++|||||+|.+.++|.+|+..|||..++ |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 45789999999999999999999999999 9999998642 4689999999999999999999999999 999999
Q ss_pred EeecCc
Q psy15676 264 RGEEWN 269 (309)
Q Consensus 264 ~~a~~~ 269 (309)
.||++.
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999764
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.2e-13 Score=107.98 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=64.2
Q ss_pred ecCCCCCCCHHHHHHHH------------hcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeE
Q psy15676 194 VCKLNPVTSDDDLEIIF------------SRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261 (309)
Q Consensus 194 V~nL~~~~te~~L~~~F------------~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I 261 (309)
+.||++.+++++|...| ++||.|.++.++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 999999999999876 48899999999999999999999999999999999
Q ss_pred EEEee
Q psy15676 262 HARGE 266 (309)
Q Consensus 262 ~V~~a 266 (309)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.40 E-value=5.8e-13 Score=121.37 Aligned_cols=82 Identities=9% Similarity=0.171 Sum_probs=71.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEee
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFG-KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGE 266 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG-~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a 266 (309)
+.++|||+|||+.+++++|..+|++|| .|..+.++.+.. |.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 568999999999999999999999999 999999998875 889999999999999999999999999999999999998
Q ss_pred cCch
Q psy15676 267 EWNM 270 (309)
Q Consensus 267 ~~~~ 270 (309)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 7643
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.37 E-value=1.2e-12 Score=111.89 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=65.7
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCC-----------ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFG-----------KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI 256 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG-----------~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i 256 (309)
..++|||+|||+++|+++|..+|++|| .|.++.+ +.++|||||+|.+.++|.+|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 468999999999999999999999994 4554444 567899999999999999999 8999999
Q ss_pred CCeeEEEEeecCc
Q psy15676 257 DDRRIHARGEEWN 269 (309)
Q Consensus 257 ~gr~I~V~~a~~~ 269 (309)
+|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998753
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.2e-12 Score=109.43 Aligned_cols=74 Identities=16% Similarity=0.321 Sum_probs=66.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcC----C-------ceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRF----G-------KVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI 256 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~f----G-------~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i 256 (309)
+.++|||+|||+++|+++|..+|++| | .|.++.+ +.++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45899999999999999999999999 6 6666655 456899999999999999999 8999999
Q ss_pred CCeeEEEEeecC
Q psy15676 257 DDRRIHARGEEW 268 (309)
Q Consensus 257 ~gr~I~V~~a~~ 268 (309)
+|+.|.|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (172)
T 2g4b_A 76 QGQSLKIRRPHD 87 (172)
T ss_dssp TTEECEEECCSS
T ss_pred cCceeeecCCcc
Confidence 999999998865
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=8.7e-12 Score=116.99 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=65.8
Q ss_pred CCCCcEEEecC--CCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeC---Ce-
Q psy15676 186 APPENVLFVCK--LNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLID---DR- 259 (309)
Q Consensus 186 ~~~~~~lfV~n--L~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~---gr- 259 (309)
..|..+||||| |++.+|+++|+++|++||.|.++.+.. ++|||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56789999999 578999999999999999999887642 5799999999999999999999998773 44
Q ss_pred -eEEEEeec
Q psy15676 260 -RIHARGEE 267 (309)
Q Consensus 260 -~I~V~~a~ 267 (309)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57778875
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.3e-11 Score=93.46 Aligned_cols=65 Identities=22% Similarity=0.109 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCch
Q psy15676 199 PVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWNM 270 (309)
Q Consensus 199 ~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~~ 270 (309)
..+++++|+.+|++||.|..+.|+ +.++|||||+|.+.++|..|+..+++ +.|++|+|++++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 568999999999999999999987 46899999999999999999987554 679999999998654
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=3.5e-11 Score=95.57 Aligned_cols=85 Identities=11% Similarity=0.039 Sum_probs=70.2
Q ss_pred CCCcEEEecCCCCCCC----------HHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCcee
Q psy15676 187 PPENVLFVCKLNPVTS----------DDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLI 256 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~t----------e~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i 256 (309)
.|.+.|.+.|+=..-. +++|+..|++||.|.++.+.++. ++|||||+|.+.++|.+|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567888988743221 35789999999999999886542 589999999999999999999999999
Q ss_pred CCeeEEEEeecCchhhccc
Q psy15676 257 DDRRIHARGEEWNMWKRRE 275 (309)
Q Consensus 257 ~gr~I~V~~a~~~~~~~r~ 275 (309)
+|+.|.|.++....|..+-
T Consensus 81 ~GR~i~v~~~~~~~y~~~f 99 (114)
T 3s6e_A 81 AGKMITAAYVPLPTYHNLF 99 (114)
T ss_dssp TTEECEEEEECHHHHHHHC
T ss_pred CCEEEEEEEEcHHHHHHhC
Confidence 9999999999876665543
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=8.3e-11 Score=88.93 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=66.9
Q ss_pred CCCCCCcEEEecCCCC----CCCH----HHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCce
Q psy15676 184 DAAPPENVLFVCKLNP----VTSD----DDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVL 255 (309)
Q Consensus 184 ~~~~~~~~lfV~nL~~----~~te----~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~ 255 (309)
..+||..||+|.-++. +... .+|...|++||.|..++++.++ +||+|.+.++|.+|+. |||..
T Consensus 2 ~~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~ 72 (91)
T 2dnr_A 2 SSGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKE 72 (91)
T ss_dssp CCCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCE
T ss_pred CCCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeE
Confidence 3578999999988762 3333 5789999999999999998764 8999999999999998 99999
Q ss_pred eCCeeEEEEeecCch
Q psy15676 256 IDDRRIHARGEEWNM 270 (309)
Q Consensus 256 i~gr~I~V~~a~~~~ 270 (309)
++|+.|+|++++++.
T Consensus 73 v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 73 LLNRTITIALKSPSG 87 (91)
T ss_dssp ETTEEEEEEECCCSS
T ss_pred eCCeEEEEEeCCCCc
Confidence 999999999998653
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=8.3e-10 Score=88.30 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=68.8
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecC-HHHHHHHHHHcC--CceeCCeeE
Q psy15676 186 APPENVLFVCKLNPV-TSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDN-PKSCEDAYLKMD--NVLIDDRRI 261 (309)
Q Consensus 186 ~~~~~~lfV~nL~~~-~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~-~~~a~~Al~~l~--g~~i~gr~I 261 (309)
-++++.|||+||++. ++.++|+.+|++||.|.+|.++.+.. .|||.|.+ ..+|..|+..+| |..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 467899999999999 99999999999999999999987654 59999999 899999999995 689999999
Q ss_pred EEEeecC
Q psy15676 262 HARGEEW 268 (309)
Q Consensus 262 ~V~~a~~ 268 (309)
++.....
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9887653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.7e-09 Score=82.17 Aligned_cols=75 Identities=15% Similarity=0.295 Sum_probs=64.4
Q ss_pred CCCCCCcEEEecCCCCC------CCH---HHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCc
Q psy15676 184 DAAPPENVLFVCKLNPV------TSD---DDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNV 254 (309)
Q Consensus 184 ~~~~~~~~lfV~nL~~~------~te---~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~ 254 (309)
..+||..||+|.-++.+ ..+ .+|...|++||.|..++++.++ +||+|.+.++|.+|+. |||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 45789999999988743 221 4688999999999999998764 9999999999999998 9999
Q ss_pred eeCCeeEEEEeec
Q psy15676 255 LIDDRRIHARGEE 267 (309)
Q Consensus 255 ~i~gr~I~V~~a~ 267 (309)
.++|+.|+|++-.
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998753
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.84 E-value=5.3e-09 Score=91.67 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=64.8
Q ss_pred CCHHHHHHHHhcCCceeEEEEeeeCC----CCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEEeecCchhhcc
Q psy15676 201 TSDDDLEIIFSRFGKVNCCEVIRDKV----TGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWNMWKRR 274 (309)
Q Consensus 201 ~te~~L~~~F~~fG~I~~v~i~~d~~----tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~~a~~~~~~~r 274 (309)
-.+++|...|++||.|.++.++.+.. +|.++|++||+|.+.++|.+|+..|||..++||.|.+.|+....|..+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~~~ 218 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS 218 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHHTT
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhhhc
Confidence 34678999999999999999986644 458999999999999999999999999999999999999876555544
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.3e-05 Score=62.14 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=66.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhcC-----CceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSRF-----GKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~f-----G~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I 261 (309)
...++|-+-|||..++...++.+...+ |.+..+.+..|. |-|+|+|.+...|-+|.-.++|..|+|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346888899999999999999999999 999999888775 469999999999999988999999999999
Q ss_pred EEEee
Q psy15676 262 HARGE 266 (309)
Q Consensus 262 ~V~~a 266 (309)
++.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98743
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.00049 Score=52.94 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=61.9
Q ss_pred CcEEEecCCCCCC-CH----HHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEE
Q psy15676 189 ENVLFVCKLNPVT-SD----DDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263 (309)
Q Consensus 189 ~~~lfV~nL~~~~-te----~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V 263 (309)
.++|+|+||+..+ +. +.++.+|..|+++........- .-..|.|.+.++|.+|-..|++..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998854 32 4678999999998876665432 34689999999999999999999999999999
Q ss_pred EeecC
Q psy15676 264 RGEEW 268 (309)
Q Consensus 264 ~~a~~ 268 (309)
-++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99984
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.012 Score=45.15 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=57.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhc-----CCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeE
Q psy15676 187 PPENVLFVCKLNPVTSDDDLEIIFSR-----FGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261 (309)
Q Consensus 187 ~~~~~lfV~nL~~~~te~~L~~~F~~-----fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I 261 (309)
....+|.|.|||+.+.++.|.-+|+. -|.|..+.... +-|+|+|.+...|+..++. ..+.++|.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34689999999999999999999976 25777776532 5789999999999999863 4788999999
Q ss_pred EEEee
Q psy15676 262 HARGE 266 (309)
Q Consensus 262 ~V~~a 266 (309)
.|.-.
T Consensus 77 sV~P~ 81 (104)
T 2dhx_A 77 SLRPA 81 (104)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 88643
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.68 E-value=0.0054 Score=46.48 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=47.8
Q ss_pred CCCCCCCC-cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHc
Q psy15676 182 EADAAPPE-NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251 (309)
Q Consensus 182 ~~~~~~~~-~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l 251 (309)
..+..+.. ..+++ +.|+.....||..+|+.||.| .|..+-|. .|||.|.+.+.|..|+..+
T Consensus 8 g~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 8 GPDLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSCCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 33444443 45555 999999999999999999954 56666653 7999999999999999865
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.57 E-value=0.009 Score=44.84 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=55.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCC--cccEEEEEecCHHHHHHHHHHcCCceeC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGD--SLQYAFVEFDNPKSCEDAYLKMDNVLID 257 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~--skG~aFV~F~~~~~a~~Al~~l~g~~i~ 257 (309)
.+|.|.+||++.|++++.+.++..+.+.....+..+.+.+ .-+-|||.|.+.+++..-...++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4688999999999999999999988877766665544332 2356899999999999999999997664
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.01 E-value=0.012 Score=44.69 Aligned_cols=54 Identities=30% Similarity=0.381 Sum_probs=45.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcC
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD 252 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~ 252 (309)
..++| +.|+.....||..+|+.||.| .|..+-|. .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45566 999999999999999999943 57776653 79999999999999998764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.86 E-value=0.026 Score=44.35 Aligned_cols=72 Identities=10% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCC-eeEEEEee
Q psy15676 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDD-RRIHARGE 266 (309)
Q Consensus 188 ~~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~g-r~I~V~~a 266 (309)
...-|-|-+.|+.. ...+...|++||.|.+.... ....+-.|.|.+..+|++||.. ||..++| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 35677888999885 56677889999999887651 1235889999999999999975 9999985 66676655
Q ss_pred c
Q psy15676 267 E 267 (309)
Q Consensus 267 ~ 267 (309)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.60 E-value=0.063 Score=40.63 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=52.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCC--cccEEEEEecCHHHHHHHHHHcCCceeCC-----eeE
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGD--SLQYAFVEFDNPKSCEDAYLKMDNVLIDD-----RRI 261 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~--skG~aFV~F~~~~~a~~Al~~l~g~~i~g-----r~I 261 (309)
.-+|.|+.||++.|++++.+.++..-.+.....+....+.+ .-.-|||.|.+.+++..-...++|..+-+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 35788999999999999887776654443322222221111 12468999999999999999999976643 234
Q ss_pred EEEee
Q psy15676 262 HARGE 266 (309)
Q Consensus 262 ~V~~a 266 (309)
.|.+|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55555
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.35 E-value=0.023 Score=54.91 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=40.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHH
Q psy15676 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK 250 (309)
Q Consensus 190 ~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~ 250 (309)
++|||. .+..+++.+|..+|++||+|.++.+-.+. | -||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 689997 78999999999999999999998775432 3 6999999999998877643
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.25 E-value=0.039 Score=44.67 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=28.4
Q ss_pred EEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC
Q psy15676 218 CCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN 253 (309)
Q Consensus 218 ~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g 253 (309)
.+.++.+. +.++|||||+|.+.++|++|+..+++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 45667775 36899999999999999999988775
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.67 E-value=0.09 Score=41.95 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=52.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeE-EEEeee--------CCC----C-CcccEEEEEecCHHHHHHHHHHcCCc
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNC-CEVIRD--------KVT----G-DSLQYAFVEFDNPKSCEDAYLKMDNV 254 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~-v~i~~d--------~~t----g-~skG~aFV~F~~~~~a~~Al~~l~g~ 254 (309)
..-|.|-+.|++.+ ..+...|++||.|.. .....+ +.+ + ....+..|+|.+..+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 35566778877655 456678999999865 211110 000 0 1245779999999999999975 999
Q ss_pred eeCCeeEEEEeec
Q psy15676 255 LIDDRRIHARGEE 267 (309)
Q Consensus 255 ~i~gr~I~V~~a~ 267 (309)
.|+|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988877653
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.09 E-value=0.028 Score=45.29 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=37.1
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHc-CCceeCCeeEEEEeecC
Q psy15676 227 TGDSLQYAFVEFDNPKSCEDAYLKM-DNVLIDDRRIHARGEEW 268 (309)
Q Consensus 227 tg~skG~aFV~F~~~~~a~~Al~~l-~g~~i~gr~I~V~~a~~ 268 (309)
....+|+++|+|.+.++|++|+..| ||..++| .+.++++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567899999999999999999999 9999999 999998764
No 221
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=82.54 E-value=0.78 Score=40.12 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=24.3
Q ss_pred cccccCCccccceEeecCCCCCCCCCCCC
Q psy15676 98 VFKRKNDIRITHAVILEDPYEDLPELVYP 126 (309)
Q Consensus 98 ~~rp~~~iri~h~~il~dPf~~p~~l~~p 126 (309)
.++|+.+|+|.+..++.|||+|+.....|
T Consensus 177 ~~~P~~~i~I~~~~vl~dPf~d~~~~~~~ 205 (232)
T 3bkp_A 177 EDRPMTPPFIKSVDVLWNPFEDLVPRRLP 205 (232)
T ss_dssp GGCBSSCCBEEEEEEEECCCTTCCCSSCC
T ss_pred CCCcCCCeEEEEEEEEcCChhhhhhcccc
Confidence 37999999999999999999987744433
No 222
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=79.15 E-value=0.75 Score=38.77 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=17.4
Q ss_pred ccccCCccccceEeecCCCCCCCCC
Q psy15676 99 FKRKNDIRITHAVILEDPYEDLPEL 123 (309)
Q Consensus 99 ~rp~~~iri~h~~il~dPf~~p~~l 123 (309)
++|+.+|+|.+..++.|||+||..+
T Consensus 160 ~~P~~~v~I~~~~i~~dPf~d~~~~ 184 (185)
T 2poe_A 160 HKPIDEIIIKDIVIHSNPIADQEIL 184 (185)
T ss_dssp SCBSSCCEEEEEEEECCC-------
T ss_pred CCcCCCeEEEEEEEECCCCCCcccc
Confidence 6999999999999999999998643
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.49 E-value=5 Score=39.00 Aligned_cols=56 Identities=29% Similarity=0.374 Sum_probs=44.6
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCC
Q psy15676 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDN 253 (309)
Q Consensus 189 ~~~lfV~nL~~~~te~~L~~~F~~fG~I~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g 253 (309)
+..++|+ +|..+...+|...|+.||.+ .+..+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3466665 88888999999999999954 5555443 3699999999999999998753
No 224
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=76.34 E-value=1.2 Score=36.63 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=19.3
Q ss_pred ccccCCccccceEeecCCCCC
Q psy15676 99 FKRKNDIRITHAVILEDPYED 119 (309)
Q Consensus 99 ~rp~~~iri~h~~il~dPf~~ 119 (309)
++|+.+|+|.+..|+.|||+|
T Consensus 141 ~~P~~~v~I~~~~i~~~Pf~d 161 (161)
T 2ok3_A 141 YRPLNDVHIKDITIHANPFAQ 161 (161)
T ss_dssp CCBSSCCBEEEEEEECCSCC-
T ss_pred CCcCCCeEEEEEEEecCCCCC
Confidence 799999999999999999986
No 225
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=74.73 E-value=1.2 Score=37.89 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=18.5
Q ss_pred ccccCCccccceEeecCCCCCCC
Q psy15676 99 FKRKNDIRITHAVILEDPYEDLP 121 (309)
Q Consensus 99 ~rp~~~iri~h~~il~dPf~~p~ 121 (309)
++|+.+|+|.+..++.|||+++.
T Consensus 158 ~~P~~~i~I~~~~v~~dPf~d~~ 180 (201)
T 3bo7_A 158 DKPLKPPKVEEIIVFKNPFEDAR 180 (201)
T ss_dssp SCBSSCCBEEEEEEEECCC----
T ss_pred CCcCCCeEEEEEEEEcCCccCHH
Confidence 79999999999999999999865
No 226
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=69.38 E-value=2 Score=36.16 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred cccccCCccccceEeecCCCCC
Q psy15676 98 VFKRKNDIRITHAVILEDPYED 119 (309)
Q Consensus 98 ~~rp~~~iri~h~~il~dPf~~ 119 (309)
.++|+.+|+|.+..++.|||+|
T Consensus 164 ~~~P~~~v~I~~~~v~~~Pf~d 185 (185)
T 2hq6_A 164 DERPHNPHKIKSCEVLFNPFDD 185 (185)
T ss_dssp TSCBSSCCEEEEEEEEECTTC-
T ss_pred CCCCCCCeEEEEEEEeCCCCCC
Confidence 3699999999999999999986
No 227
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=56.57 E-value=26 Score=24.15 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=40.5
Q ss_pred EEEec-CCCCCCCHHHHHHHHhcCCce-----eEEEEeeeCCCCCcccEEEEEecCHHHHHHHHHHcCCceeCCeeEEEE
Q psy15676 191 VLFVC-KLNPVTSDDDLEIIFSRFGKV-----NCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHAR 264 (309)
Q Consensus 191 ~lfV~-nL~~~~te~~L~~~F~~fG~I-----~~v~i~~d~~tg~skG~aFV~F~~~~~a~~Al~~l~g~~i~gr~I~V~ 264 (309)
++|++ +-...+...+|..++..-+.+ -.+.+. -.|+||+-.. ..+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45553 122345666777777654433 444442 1488998875 55778899999999999999988
Q ss_pred eec
Q psy15676 265 GEE 267 (309)
Q Consensus 265 ~a~ 267 (309)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 228
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=53.53 E-value=2.8 Score=35.58 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=20.4
Q ss_pred ccccCCccccceEeecCCCCCC
Q psy15676 99 FKRKNDIRITHAVILEDPYEDL 120 (309)
Q Consensus 99 ~rp~~~iri~h~~il~dPf~~p 120 (309)
++|+.+|+|.+..++.|||+++
T Consensus 160 ~~P~~~i~I~~~~v~~dPf~d~ 181 (197)
T 1zkc_A 160 DRPKEEIRIDATTVFVDPYEEA 181 (197)
T ss_dssp CCBSSCCEEEEEEEEECTTHHH
T ss_pred CCcCCCeEEEEEEEEcCCcccH
Confidence 7999999999999999999964
No 229
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=46.93 E-value=4.5 Score=34.01 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.5
Q ss_pred ccccCCccccceEee--cCCCCCCC
Q psy15676 99 FKRKNDIRITHAVIL--EDPYEDLP 121 (309)
Q Consensus 99 ~rp~~~iri~h~~il--~dPf~~p~ 121 (309)
++|+.+|+|.+..++ +|||++|.
T Consensus 163 ~~P~~~v~I~~~~~l~~~~Pf~~~~ 187 (188)
T 3ich_A 163 DKPLKDVIIADCGKIEVEKPFAIAK 187 (188)
T ss_dssp SCBSSCEEEEEEEEEEEEEEEECCC
T ss_pred CeECCCEEEEEeEEEecCCCCCCCC
Confidence 599999999998887 99999875
No 230
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=34.89 E-value=12 Score=21.06 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=12.4
Q ss_pred hhhHHhhhhhhhcc
Q psy15676 7 HAKCYIWSVVLYGS 20 (309)
Q Consensus 7 ~~~~~v~p~~~Yg~ 20 (309)
||=+|+.|+++||-
T Consensus 9 lyFa~l~paIaFGg 22 (26)
T 1btq_A 9 IYFAALSPAITFGX 22 (26)
T ss_pred HHHHHHcchhcccc
Confidence 78899999999983
No 231
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=33.71 E-value=15 Score=21.95 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=13.0
Q ss_pred hhhHHhhhhhhhccc
Q psy15676 7 HAKCYIWSVVLYGSE 21 (309)
Q Consensus 7 ~~~~~v~p~~~Yg~e 21 (309)
||=+++.|+++||.-
T Consensus 16 iyFa~l~PaIaFg~l 30 (34)
T 1bnx_A 16 IYFAALSPAITFGGL 30 (34)
T ss_dssp HHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHH
Confidence 688999999999954
No 232
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=26.48 E-value=11 Score=32.81 Aligned_cols=28 Identities=7% Similarity=-0.088 Sum_probs=21.7
Q ss_pred ccccCCccccceEeecCCCCCCCCCCCC
Q psy15676 99 FKRKNDIRITHAVILEDPYEDLPELVYP 126 (309)
Q Consensus 99 ~rp~~~iri~h~~il~dPf~~p~~l~~p 126 (309)
++|+.+|+|.+..++.+||++++..+.+
T Consensus 192 ~~P~~~V~I~~~~~l~~p~~~~~k~~~~ 219 (234)
T 2ose_A 192 GRKYPTFSIGKCGAYLDSSQAQRKRPVN 219 (234)
T ss_dssp TCCCCCEEEEEEEECCCHHHHCC-----
T ss_pred CCccCCEEEEEEEEecCCcccccccccc
Confidence 7999999999999999999987755433
No 233
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=22.26 E-value=53 Score=18.17 Aligned_cols=18 Identities=44% Similarity=0.829 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCc
Q psy15676 115 DPYEDLPELVYPPSPEPT 132 (309)
Q Consensus 115 dPf~~p~~l~~p~~p~p~ 132 (309)
.|+.-.+.|.+|.||.|.
T Consensus 7 Spy~~Y~dlKPPsSPsPs 24 (26)
T 3mhp_C 7 SPYTAYDDLKPPSSPSPT 24 (26)
T ss_dssp STTTTBTTSSCSSCSSCC
T ss_pred CccccccccCCCCCCCCC
Confidence 567777788888777764
Done!