Your job contains 1 sequence.
>psy15676
MDSNNNHAKCYIWSVVLYGSETWTMRKKEEKYLESFEMWLWRRMEKIKWSDKIRNEEVLR
RGFSFLEDFEIVSGISKVCNKTHRYKLAVKCVQSNIIVFKRKNDIRITHAVILEDPYEDL
PELVYPPSPEPTRELLANGLIGADEDIDETAGLSAQEIEELRAEREAKARATILEIVGDL
PEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDN
PKSCEDAYLKMDNVLIDDRRIHARGEEWNMWKRREEEEEKEEIDEKKEEEEKEDRAMIGD
RMEDGLREM
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15676
(309 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0027617 - symbol:CG5808 species:7227 "Drosophila m... 526 1.3e-50 1
UNIPROTKB|F1N6W2 - symbol:PPIL4 "Uncharacterized protein"... 509 8.5e-49 1
UNIPROTKB|Q8WUA2 - symbol:PPIL4 "Peptidyl-prolyl cis-tran... 509 8.5e-49 1
MGI|MGI:1914668 - symbol:Ppil4 "peptidylprolyl isomerase ... 507 1.4e-48 1
RGD|1311051 - symbol:Ppil4 "peptidylprolyl isomerase (cyc... 507 1.4e-48 1
UNIPROTKB|F1P661 - symbol:PPIL4 "Uncharacterized protein"... 506 1.8e-48 1
UNIPROTKB|E1C3R0 - symbol:PPIL4 "Uncharacterized protein"... 501 6.0e-48 1
UNIPROTKB|I3LGX0 - symbol:PPIL4 "Uncharacterized protein"... 496 2.0e-47 1
WB|WBGene00000890 - symbol:sig-7 species:6239 "Caenorhabd... 488 1.4e-46 1
ZFIN|ZDB-GENE-030131-6251 - symbol:ppil4 "peptidylprolyl ... 483 4.8e-46 1
POMBASE|SPBC17G9.05 - symbol:rct1 "RRM-containing cycloph... 459 1.7e-43 1
ASPGD|ASPL0000033941 - symbol:cyp8 species:162425 "Emeric... 458 2.2e-43 1
UNIPROTKB|G4N9S1 - symbol:MGG_10681 "Peptidyl-prolyl cis-... 403 1.5e-37 1
TAIR|locus:2024852 - symbol:CYP59 "cyclophilin 59" specie... 385 1.2e-35 1
DICTYBASE|DDB_G0292710 - symbol:DDB_G0292710 "peptidylpro... 374 1.7e-34 1
ZFIN|ZDB-GENE-050706-77 - symbol:snrnp35 "small nuclear r... 144 1.1e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 132 2.0e-08 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 129 4.4e-08 1
UNIPROTKB|Q1LZH0 - symbol:SNRNP35 "U11/U12 small nuclear ... 139 1.8e-07 1
UNIPROTKB|Q16560 - symbol:SNRNP35 "U11/U12 small nuclear ... 139 1.9e-07 1
UNIPROTKB|I3LN96 - symbol:SNRNP35 "Uncharacterized protei... 138 2.4e-07 1
RGD|1310724 - symbol:Snrnp35 "small nuclear ribonucleopro... 137 3.2e-07 1
UNIPROTKB|Q5U1W5 - symbol:Snrnp35 "U11/U12 small nuclear ... 137 3.2e-07 1
UNIPROTKB|F1P6U2 - symbol:SNRNP35 "Uncharacterized protei... 137 3.3e-07 1
MGI|MGI:1923417 - symbol:Snrnp35 "small nuclear ribonucle... 136 4.2e-07 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 140 8.8e-07 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 9.6e-07 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 9.6e-07 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 9.6e-07 1
POMBASE|SPAC19A8.13 - symbol:usp101 "U1 snRNP-associated ... 132 1.7e-06 1
TAIR|locus:2049339 - symbol:AT2G21690 species:3702 "Arabi... 114 2.1e-06 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 113 2.7e-06 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 112 3.5e-06 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 112 3.5e-06 1
UNIPROTKB|F1NJ85 - symbol:SNRNP35 "Uncharacterized protei... 128 4.0e-06 1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 111 4.5e-06 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 118 4.5e-06 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 133 5.2e-06 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 133 5.9e-06 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 129 6.5e-06 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 129 7.1e-06 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 129 8.4e-06 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 8.7e-06 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 108 9.6e-06 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 129 1.0e-05 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 123 1.2e-05 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 107 1.2e-05 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 117 1.3e-05 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 1.3e-05 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 117 1.3e-05 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 1.3e-05 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 129 1.3e-05 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 1.4e-05 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 129 1.5e-05 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 129 1.6e-05 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 129 1.6e-05 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 129 1.6e-05 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 129 1.7e-05 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 129 1.7e-05 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 129 1.7e-05 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 129 1.7e-05 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 110 1.7e-05 1
UNIPROTKB|F6W1U9 - symbol:RBMS2 "RNA-binding motif, singl... 98 1.8e-05 2
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 117 2.5e-05 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 115 2.6e-05 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 115 2.6e-05 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 115 2.6e-05 1
TAIR|locus:2100840 - symbol:AT3G04500 species:3702 "Arabi... 121 2.7e-05 1
DICTYBASE|DDB_G0278349 - symbol:tra2 "putative transforme... 123 3.3e-05 1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi... 103 3.4e-05 1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi... 103 3.4e-05 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 110 3.5e-05 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 4.1e-05 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 124 4.9e-05 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 117 5.2e-05 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 115 5.3e-05 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 123 5.7e-05 1
UNIPROTKB|H3BR27 - symbol:RBMX "RNA-binding motif protein... 101 5.7e-05 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 101 5.7e-05 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 111 5.8e-05 1
UNIPROTKB|K7GMF5 - symbol:RBMX "Uncharacterized protein" ... 100 7.4e-05 1
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 102 8.9e-05 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 99 9.5e-05 1
UNIPROTKB|K7GQ39 - symbol:RBMX "Uncharacterized protein" ... 99 9.5e-05 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 0.00010 1
UNIPROTKB|H0YCP8 - symbol:PUF60 "Poly(U)-binding-splicing... 117 0.00011 1
DICTYBASE|DDB_G0275027 - symbol:DDB_G0275027 "SRA stem-lo... 98 0.00012 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 98 0.00012 1
ZFIN|ZDB-GENE-030131-579 - symbol:rbmx "RNA binding motif... 119 0.00012 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 0.00013 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 109 0.00014 1
UNIPROTKB|F1NDG5 - symbol:374274 "Uncharacterized protein... 97 0.00016 1
TAIR|locus:2831834 - symbol:AT5G03580 species:3702 "Arabi... 97 0.00016 1
WB|WBGene00004390 - symbol:rnp-7 species:6239 "Caenorhabd... 117 0.00017 1
TAIR|locus:2058141 - symbol:AT2G43370 species:3702 "Arabi... 117 0.00017 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 106 0.00018 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 109 0.00018 1
GENEDB_PFALCIPARUM|MAL13P1.338 - symbol:MAL13P1.338 "u1 s... 118 0.00020 1
UNIPROTKB|Q8ID37 - symbol:MAL13P1.338 "U1 small nuclear r... 118 0.00020 1
UNIPROTKB|B4DN89 - symbol:SRSF2 "Serine/arginine-rich-spl... 112 0.00020 1
WARNING: Descriptions of 59 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0027617 [details] [associations]
symbol:CG5808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0006457 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 EMBL:AF132148
RefSeq:NP_651291.1 UniGene:Dm.3212 HSSP:P14832 SMR:Q9XYZ6
IntAct:Q9XYZ6 MINT:MINT-970905 STRING:Q9XYZ6
EnsemblMetazoa:FBtr0084738 GeneID:42957 KEGG:dme:Dmel_CG5808
UCSC:CG5808-RA FlyBase:FBgn0027617 InParanoid:Q9XYZ6 OMA:SIWGVVE
OrthoDB:EOG49S4P0 GenomeRNAi:42957 NextBio:831514 Uniprot:Q9XYZ6
Length = 653
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 106/165 (64%), Positives = 120/165 (72%)
Query: 99 FKRKNDIRITHAVILEDPYEDLPELVYPP-SPEPTRELLANGLIGADEDIDETAGLSXXX 157
F+ DIRITH V+LEDP+ + L P SP P+ E L NG I ADEDID+T G++
Sbjct: 148 FRPYQDIRITHTVVLEDPFPNPRGLQAPSRSPSPSAERLKNGRIAADEDIDDTDGMTAEE 207
Query: 158 XXXXXXXXXXXXXXTILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVN 217
TILEIVGDLP+AD APPENVLFVCKLNPVT+DDDLEIIFS FG +
Sbjct: 208 MQEMLAEREAKARATILEIVGDLPDADMAPPENVLFVCKLNPVTTDDDLEIIFSSFGVLK 267
Query: 218 CCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
CEVIRD+ TGDSLQYAFVEF++ KSCE AY KMDNVLIDDRRIH
Sbjct: 268 GCEVIRDRKTGDSLQYAFVEFEDQKSCEAAYFKMDNVLIDDRRIH 312
>UNIPROTKB|F1N6W2 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS CTD:85313
EMBL:DAAA02027047 EMBL:DAAA02027048 EMBL:DAAA02027049
EMBL:DAAA02027050 IPI:IPI00716338 RefSeq:NP_001193016.1
UniGene:Bt.9312 ProteinModelPortal:F1N6W2
Ensembl:ENSBTAT00000022582 GeneID:535676 KEGG:bta:535676
NextBio:20876809 ArrayExpress:F1N6W2 Uniprot:F1N6W2
Length = 492
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 103/199 (51%), Positives = 130/199 (65%)
Query: 67 EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIV--FKRKNDIRITHAVILEDPYEDLPELV 124
E+ + + G+ V + +K + + F DIRI H VIL+DP++D P+L+
Sbjct: 114 ENLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVILDDPFDDPPDLL 173
Query: 125 YPP-SPEPTRELLANGLIGADEDIDETAGLSXXXXXXXXXXXXXXXXXTILEIVGDLPEA 183
P SPEPTRE L +G IGADE+ID+ G S +LE+VGDLP+A
Sbjct: 174 IPDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDA 233
Query: 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKS 243
D PPENVLFVCKLNPVT+D+DLEIIFSRFG + CEVIRD TG+SL YAF+EF+ +
Sbjct: 234 DIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEED 293
Query: 244 CEDAYLKMDNVLIDDRRIH 262
CE A+ KMDNVLIDDRRIH
Sbjct: 294 CEKAFFKMDNVLIDDRRIH 312
>UNIPROTKB|Q8WUA2 [details] [associations]
symbol:PPIL4 "Peptidyl-prolyl cis-trans isomerase-like 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 EMBL:CH471051
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 EMBL:AL078581 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS EMBL:AF357880 EMBL:AK315388 EMBL:BX537536
EMBL:AL357619 EMBL:BC020986 IPI:IPI00642862 RefSeq:NP_624311.1
UniGene:Hs.740616 ProteinModelPortal:Q8WUA2 SMR:Q8WUA2
IntAct:Q8WUA2 MINT:MINT-1182736 STRING:Q8WUA2 PhosphoSite:Q8WUA2
DMDM:74760546 PaxDb:Q8WUA2 PeptideAtlas:Q8WUA2 PRIDE:Q8WUA2
DNASU:85313 Ensembl:ENST00000253329 GeneID:85313 KEGG:hsa:85313
UCSC:uc003qmo.2 CTD:85313 GeneCards:GC06M149867 HGNC:HGNC:15702
HPA:HPA031600 MIM:607609 neXtProt:NX_Q8WUA2 PharmGKB:PA33590
HOVERGEN:HBG057731 InParanoid:Q8WUA2 OrthoDB:EOG4QVCC7
PhylomeDB:Q8WUA2 GenomeRNAi:85313 NextBio:75805 ArrayExpress:Q8WUA2
Bgee:Q8WUA2 CleanEx:HS_PPIL4 Genevestigator:Q8WUA2
GermOnline:ENSG00000131013 Uniprot:Q8WUA2
Length = 492
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 103/199 (51%), Positives = 130/199 (65%)
Query: 67 EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIV--FKRKNDIRITHAVILEDPYEDLPELV 124
E+ + + G+ V + +K + + F DIRI H VIL+DP++D P+L+
Sbjct: 114 ENLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVILDDPFDDPPDLL 173
Query: 125 YPP-SPEPTRELLANGLIGADEDIDETAGLSXXXXXXXXXXXXXXXXXTILEIVGDLPEA 183
P SPEPTRE L +G IGADE+ID+ G S +LE+VGDLP+A
Sbjct: 174 IPDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDA 233
Query: 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKS 243
D PPENVLFVCKLNPVT+D+DLEIIFSRFG + CEVIRD TG+SL YAF+EF+ +
Sbjct: 234 DIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEED 293
Query: 244 CEDAYLKMDNVLIDDRRIH 262
CE A+ KMDNVLIDDRRIH
Sbjct: 294 CEKAFFKMDNVLIDDRRIH 312
>MGI|MGI:1914668 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1914668
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00670000097658 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS CTD:85313 HOVERGEN:HBG057731
OrthoDB:EOG4QVCC7 EMBL:AK011443 EMBL:AK014406 EMBL:AK167258
EMBL:BC079912 IPI:IPI00110280 RefSeq:NP_080417.2 UniGene:Mm.38927
ProteinModelPortal:Q9CXG3 SMR:Q9CXG3 PhosphoSite:Q9CXG3
PaxDb:Q9CXG3 PRIDE:Q9CXG3 Ensembl:ENSMUST00000015901 GeneID:67418
KEGG:mmu:67418 UCSC:uc007eip.2 InParanoid:Q9CXG3 NextBio:324510
Bgee:Q9CXG3 CleanEx:MM_PPIL4 Genevestigator:Q9CXG3
GermOnline:ENSMUSG00000015757 Uniprot:Q9CXG3
Length = 492
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 103/199 (51%), Positives = 130/199 (65%)
Query: 67 EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIV--FKRKNDIRITHAVILEDPYEDLPELV 124
E+ + + G+ V + VK + + F DIRI H VIL+DP++D P+L+
Sbjct: 114 ENLDYLDGVHTVFGEVTEGMDIVKKINETFVDKDFVPYQDIRINHTVILDDPFDDPPDLL 173
Query: 125 YPP-SPEPTRELLANGLIGADEDIDETAGLSXXXXXXXXXXXXXXXXXTILEIVGDLPEA 183
P SPEPT+E L +G IGADE+ID+ G S +LE+VGDLP+A
Sbjct: 174 IPDRSPEPTKEQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDA 233
Query: 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKS 243
D PPENVLFVCKLNPVT+D+DLEIIFSRFG + CEVIRD TG+SL YAF+EF+ +
Sbjct: 234 DIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEED 293
Query: 244 CEDAYLKMDNVLIDDRRIH 262
CE A+ KMDNVLIDDRRIH
Sbjct: 294 CEKAFFKMDNVLIDDRRIH 312
>RGD|1311051 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 RGD:1311051 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
OMA:DRTQNRS OrthoDB:EOG4QVCC7 IPI:IPI00365361
Ensembl:ENSRNOT00000021437 UCSC:RGD:1311051 Uniprot:D4AEG3
Length = 492
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 103/199 (51%), Positives = 130/199 (65%)
Query: 67 EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIV--FKRKNDIRITHAVILEDPYEDLPELV 124
E+ + + G+ V + VK + + F DIRI H VIL+DP++D P+L+
Sbjct: 114 ENLDYLDGVHTVFGEVTEGMDIVKKINETFVDKDFVPYQDIRINHTVILDDPFDDPPDLL 173
Query: 125 YPP-SPEPTRELLANGLIGADEDIDETAGLSXXXXXXXXXXXXXXXXXTILEIVGDLPEA 183
P SPEPT+E L +G IGADE+ID+ G S +LE+VGDLP+A
Sbjct: 174 IPDRSPEPTKEQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDA 233
Query: 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKS 243
D PPENVLFVCKLNPVT+D+DLEIIFSRFG + CEVIRD TG+SL YAF+EF+ +
Sbjct: 234 DIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEED 293
Query: 244 CEDAYLKMDNVLIDDRRIH 262
CE A+ KMDNVLIDDRRIH
Sbjct: 294 CEKAFFKMDNVLIDDRRIH 312
>UNIPROTKB|F1P661 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 EMBL:AAEX03000263
Ensembl:ENSCAFT00000000593 OMA:ERDGHYG NextBio:20858300
Uniprot:F1P661
Length = 526
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 102/199 (51%), Positives = 130/199 (65%)
Query: 67 EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIV--FKRKNDIRITHAVILEDPYEDLPELV 124
++ + + G+ V + +K + + F DIRI H VIL+DP++D P+L+
Sbjct: 148 DNLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVILDDPFDDPPDLL 207
Query: 125 YPP-SPEPTRELLANGLIGADEDIDETAGLSXXXXXXXXXXXXXXXXXTILEIVGDLPEA 183
P SPEPTRE L +G IGADE+ID+ G S +LE+VGDLP+A
Sbjct: 208 IPDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDA 267
Query: 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKS 243
D PPENVLFVCKLNPVT+D+DLEIIFSRFG + CEVIRD TG+SL YAF+EF+ +
Sbjct: 268 DIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEED 327
Query: 244 CEDAYLKMDNVLIDDRRIH 262
CE A+ KMDNVLIDDRRIH
Sbjct: 328 CEKAFFKMDNVLIDDRRIH 346
>UNIPROTKB|E1C3R0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
KO:K12735 OMA:DRTQNRS CTD:85313 EMBL:AADN02025352 IPI:IPI00603037
RefSeq:XP_419663.2 UniGene:Gga.34615 ProteinModelPortal:E1C3R0
Ensembl:ENSGALT00000020195 GeneID:421625 KEGG:gga:421625
NextBio:20824363 Uniprot:E1C3R0
Length = 478
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 102/199 (51%), Positives = 128/199 (64%)
Query: 67 EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIV--FKRKNDIRITHAVILEDPYEDLPELV 124
E+ + + G+ V + +K + + F DIRI H VIL+DP++D P L
Sbjct: 114 ENLDYLDGVHTVFGEVTEGMDVLKTINETFVDKDFIPYQDIRINHTVILDDPFDDPPGLP 173
Query: 125 YPP-SPEPTRELLANGLIGADEDIDETAGLSXXXXXXXXXXXXXXXXXTILEIVGDLPEA 183
P SPEPT+E L +G IGADE+ID+ G S +LE+VGDLP+A
Sbjct: 174 IPDRSPEPTKEQLDSGRIGADEEIDDMKGRSADEIEEVQAEKEAKTRAILLEMVGDLPDA 233
Query: 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKS 243
+ PPENVLFVCKLNPVT+D+DLEIIFSRFG + CEVIRD TG+SL YAF+EF+ +
Sbjct: 234 EVKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIKSCEVIRDWKTGESLCYAFIEFEKEED 293
Query: 244 CEDAYLKMDNVLIDDRRIH 262
CE AY KMDNVLIDDRRIH
Sbjct: 294 CEKAYFKMDNVLIDDRRIH 312
>UNIPROTKB|I3LGX0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 OMA:ERDGHYG EMBL:CU459105
EMBL:CU915504 EMBL:AEMK01192340 Ensembl:ENSSSCT00000024741
Uniprot:I3LGX0
Length = 471
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 101/199 (50%), Positives = 128/199 (64%)
Query: 67 EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIV--FKRKNDIRITHAVILEDPYEDLPELV 124
++ + + G+ V + +K + + F DIRI H VIL+DP++D P+L+
Sbjct: 91 DNLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVILDDPFDDPPDLL 150
Query: 125 YPP-SPEPTRELLANGLIGADEDIDETAGLSXXXXXXXXXXXXXXXXXTILEIVGDLPEA 183
P SPEPTRE L +G IGADE+ID+ G S +LE+VGDLP+A
Sbjct: 151 IPDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDA 210
Query: 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKS 243
D PPENVLFVCKLN VT D+DLEIIFSRFG + CEVIRD TG+SL YAF+EF+ +
Sbjct: 211 DIKPPENVLFVCKLNSVTPDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEED 270
Query: 244 CEDAYLKMDNVLIDDRRIH 262
CE A+ KMDNVLIDDRRIH
Sbjct: 271 CEKAFFKMDNVLIDDRRIH 289
>WB|WBGene00000890 [details] [associations]
symbol:sig-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0040007
GO:GO:0006457 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS
EMBL:Z97628 EMBL:Z81080 PIR:T22008 RefSeq:NP_492343.2 HSSP:Q27450
ProteinModelPortal:G5EEW6 SMR:G5EEW6 PRIDE:G5EEW6
EnsemblMetazoa:F39H2.2a GeneID:172664 KEGG:cel:CELE_F39H2.2
CTD:172664 WormBase:F39H2.2a NextBio:876477 Uniprot:G5EEW6
Length = 427
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 98/179 (54%), Positives = 122/179 (68%)
Query: 86 KLAVKCVQSNIIVFKRKNDIRITHAVILEDPYEDLPELVYPP-SPEPTRELLAN-GLIGA 143
KL + +N FK DIRI+H ++L+DP+++ + +PP SP PT E+L I
Sbjct: 138 KLNEQLADTNNRPFK---DIRISHTIVLDDPFDEDARISFPPRSPSPTYEMLVKTDQIAL 194
Query: 144 DEDIDETAGLSXXXXXXXXXXXXXXXXXTILEIVGDLPEADAAPPENVLFVCKLNPVTSD 203
DE DE G + ILE+VGDL +AD PPENVLFVCKLNPVT+D
Sbjct: 195 DEKEDEDEGKTAEEIAEELQQREMAEQAQILEMVGDLKDADEVPPENVLFVCKLNPVTTD 254
Query: 204 DDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
+DLEIIFSRFGK+N CE++RD+ +GDSLQYAF+EFDN KSCE A+ KMDNVLIDDRRIH
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIH 313
>ZFIN|ZDB-GENE-030131-6251 [details] [associations]
symbol:ppil4 "peptidylprolyl isomerase
(cyclophilin)-like 4" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6251 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 HOVERGEN:HBG057731 HSSP:Q27450 EMBL:BC056814
IPI:IPI00505393 UniGene:Dr.80688 ProteinModelPortal:Q6PGV9
PRIDE:Q6PGV9 InParanoid:Q6PGV9 ArrayExpress:Q6PGV9 Bgee:Q6PGV9
Uniprot:Q6PGV9
Length = 454
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 97/172 (56%), Positives = 119/172 (69%)
Query: 92 VQSNIIVFKRKNDIRITHAVILEDPYEDLPELVYPP-SPEPTRELLANGLIGADEDIDET 150
V ++ I F+ DIRI H VIL+DP++D L P SPEPT++ L +G IGADE I++
Sbjct: 144 VDNDFIPFQ---DIRINHTVILDDPFDDPAGLPVPDRSPEPTKQQLDSGRIGADEAINDD 200
Query: 151 AGLSXXXXXXXXXXXXXXXXXTILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIF 210
G +LE+VGDLP+AD PPENVLFVCKLNPVT+D+DLEIIF
Sbjct: 201 EGKDPEELDELIKDKEAKTQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIF 260
Query: 211 SRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
SRFG + CCE+IRD TG+SL YAF+EF+ + CE AY KMDNVLIDDRRIH
Sbjct: 261 SRFGLIKCCEIIRDWKTGESLCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIH 312
>POMBASE|SPBC17G9.05 [details] [associations]
symbol:rct1 "RRM-containing cyclophilin regulating
transcription Rct1" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISM] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0006457 "protein folding"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IMP]
[GO:0044732 "mitotic spindle pole body" evidence=IDA] [GO:1901407
"regulation of phosphorylation of RNA polymerase II C-terminal
domain" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC17G9.05 GO:GO:0006457 GO:GO:0008360 GO:GO:0044732
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000790 GO:GO:0006368
GO:GO:1901407 eggNOG:COG0652 GO:GO:0003755 SUPFAM:SSF50891
HOGENOM:HOG000186284 KO:K12735 OMA:DRTQNRS OrthoDB:EOG4WWVT7
PIR:T39728 RefSeq:NP_595894.1 ProteinModelPortal:Q9UUE4
STRING:Q9UUE4 EnsemblFungi:SPBC17G9.05.1 GeneID:2539942
KEGG:spo:SPBC17G9.05 NextBio:20801085 Uniprot:Q9UUE4
Length = 432
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 96/160 (60%), Positives = 110/160 (68%)
Query: 104 DIRITHAVILEDPYEDLPELVYP-PSPEPTRELLANGLIGADEDIDETAGLSXXXXXXXX 162
DIRI H +IL+DP+ED P+LV P SP PT E LA IG +E I+ S
Sbjct: 160 DIRIKHTIILDDPFEDPPDLVEPLRSPSPTPEQLATVRIGENEQIESET--SEDKLQREK 217
Query: 163 XXXXXXXXXTILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI 222
T LE++GDLP A APPENVLFVCKLNPVT D+DLE+IFSRFGK+ C+VI
Sbjct: 218 EMEAEAEAVT-LEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVI 276
Query: 223 RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
RDK TGDSLQYAF+EFDN +S E AY KM NVLIDD RIH
Sbjct: 277 RDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIH 316
>ASPGD|ASPL0000033941 [details] [associations]
symbol:cyp8 species:162425 "Emericella nidulans"
[GO:0044732 "mitotic spindle pole body" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:1901407 "regulation of phosphorylation
of RNA polymerase II C-terminal domain" evidence=IEA] [GO:0008360
"regulation of cell shape" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003723 eggNOG:COG0724
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 EMBL:AACD01000169
RefSeq:XP_682364.1 ProteinModelPortal:Q5ARI5 STRING:Q5ARI5
EnsemblFungi:CADANIAT00009519 GeneID:2868035 KEGG:ani:AN9095.2
HOGENOM:HOG000186284 KO:K12735 OMA:DRTQNRS OrthoDB:EOG4WWVT7
Uniprot:Q5ARI5
Length = 461
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 93/160 (58%), Positives = 108/160 (67%)
Query: 104 DIRITHAVILEDPYEDLPELVYPP-SPEPTRELLANGLIGADEDIDETAGLSXXXXXXXX 162
DIRI H VIL+DP++D P LV PP SP PT+ LA I DED+ + +
Sbjct: 163 DIRIRHTVILDDPFDDPPGLVEPPESPLPTKAQLATVRIADDEDLGDD--MDEASMEKLR 220
Query: 163 XXXXXXXXXTILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI 222
LE+VGDLP A+ PPENVLFVCKLNPVT D+DLE+IFSRFGK+ CEVI
Sbjct: 221 REREARAQALTLEMVGDLPFAEVKPPENVLFVCKLNPVTQDEDLELIFSRFGKILSCEVI 280
Query: 223 RDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
RDK TGDSLQYAF+EF++ K CE AY KM VLIDD RIH
Sbjct: 281 RDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHRIH 320
>UNIPROTKB|G4N9S1 [details] [associations]
symbol:MGG_10681 "Peptidyl-prolyl cis-trans isomerase-like
4" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581
EMBL:CM001234 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 KO:K12735
RefSeq:XP_003715897.1 EnsemblFungi:MGG_10681T0 GeneID:2682882
KEGG:mgr:MGG_10681 Uniprot:G4N9S1
Length = 505
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 96/206 (46%), Positives = 117/206 (56%)
Query: 67 EDFEIVSGISKVCNKTHRYKLAVKCVQSNIIVFKRKN--DIRITHAVILEDPYEDLPELV 124
ED + + G + + K ++ + II K DIRI H VIL+DPY D L
Sbjct: 125 EDTDFIDGKAAIFGKVVEGFDTLEKINEAIIDEKGHPLVDIRIKHTVILDDPYPDPAGLR 184
Query: 125 YPPS-PEPTRELLANGLIG-------ADEDIDETAGLSXXXXXXXXXXXXXXXXXTILEI 176
P S P PT +A I A+ED + + T LE+
Sbjct: 185 EPSSSPAPTPAQIATVRIAEDEAAKLAEEDAEGDEDRAAAAEKQRREREAKAQALT-LEM 243
Query: 177 VGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFV 236
+GDLP A+ PPENVLFVCKLNPVT D DLE+IFSRFGK+ CEVIRD TGDSLQYAF+
Sbjct: 244 MGDLPFAEVKPPENVLFVCKLNPVTQDADLELIFSRFGKILSCEVIRDSKTGDSLQYAFI 303
Query: 237 EFDNPKSCEDAYLKMDNVLIDDRRIH 262
EF++ +CE AY KM VLIDDRRIH
Sbjct: 304 EFEDKAACETAYFKMQGVLIDDRRIH 329
>TAIR|locus:2024852 [details] [associations]
symbol:CYP59 "cyclophilin 59" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006457 "protein
folding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0005829
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0652
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 KO:K12735 OMA:DRTQNRS
HSSP:Q27450 EMBL:AY568526 IPI:IPI00547571 RefSeq:NP_175776.2
UniGene:At.37348 SMR:Q6Q151 IntAct:Q6Q151 STRING:Q6Q151
EnsemblPlants:AT1G53720.1 GeneID:841810 KEGG:ath:AT1G53720
TAIR:At1g53720 InParanoid:Q6Q151 ProtClustDB:CLSN2690463
Genevestigator:Q6Q151 Uniprot:Q6Q151
Length = 506
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 86/167 (51%), Positives = 105/167 (62%)
Query: 102 KNDIRITHAVILEDPYEDLPEL--VYPP-SPE--PTRELLANGLIGAD-EDIDETAGLSX 155
KN IRI H IL+DP++D P+L + P SPE P E+ + + D +DE G
Sbjct: 152 KN-IRIKHTHILDDPFDDPPQLAEMMPDASPEGKPKEEVKDDVRLEDDWVPMDEELGAQE 210
Query: 156 XXXXXXXXXXXXXXXXTILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGK 215
+LE +GD+PEA+ PP+NVLFVCKLNPVT D+DL IFSRFG
Sbjct: 211 LEEVIREKAAHSSA--VVLESIGDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGT 268
Query: 216 VNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
V +VIRD TGDSL YAF+EF+N +SCE AY KMDN LIDDRRIH
Sbjct: 269 VVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIH 315
>DICTYBASE|DDB_G0292710 [details] [associations]
symbol:DDB_G0292710 "peptidylprolyl isomerase"
species:44689 "Dictyostelium discoideum" [GO:0006457 "protein
folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0292710 GO:GO:0006457
GO:GO:0000166 EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0652 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
KO:K12735 OMA:DRTQNRS RefSeq:XP_629577.1 ProteinModelPortal:Q54CU3
STRING:Q54CU3 EnsemblProtists:DDB0215524 GeneID:8628838
KEGG:ddi:DDB_G0292710 InParanoid:Q54CU3 ProtClustDB:CLSZ2846584
Uniprot:Q54CU3
Length = 489
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 75/163 (46%), Positives = 103/163 (63%)
Query: 104 DIRITHAVILEDPYED---LPELVYPPSPEPTRELLANGLIGADEDID-ETAGLSXXXXX 159
+IRI H +IL+DP+ D L E + SP+ ++ + DED+D E G +
Sbjct: 153 NIRILHTIILDDPFPDPNGLSEHIPNQSPKFIKQSKTDDRFEIDEDLDKENRGKTKEEIN 212
Query: 160 XXXXXXXXXXXXTILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCC 219
+LE++G LP AD PP++VLFVCKLNP+T +DLE++FS+ G V C
Sbjct: 213 EIIDEKDAKSRSELLEMIGVLPSADIRPPDHVLFVCKLNPITEAEDLELVFSQCGTVKSC 272
Query: 220 EVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
EV+RDKVT DSL YAFVE+ + CE AYLK++N+LID+RRIH
Sbjct: 273 EVVRDKVTNDSLCYAFVEYSTKEECEKAYLKLENILIDERRIH 315
>ZFIN|ZDB-GENE-050706-77 [details] [associations]
symbol:snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050706-77 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:Q14103 GeneTree:ENSGT00530000063750 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD
OrthoDB:EOG4MSD0C EMBL:BC098619 IPI:IPI00616423
RefSeq:NP_001025412.1 UniGene:Dr.47462 ProteinModelPortal:Q4KMD3
Ensembl:ENSDART00000065243 GeneID:569999 KEGG:dre:569999
InParanoid:Q4KMD3 NextBio:20889939 Bgee:Q4KMD3 Uniprot:Q4KMD3
Length = 208
Score = 144 (55.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P+ LFV +LNP T+++ L +FS+FG + ++RD VTG S +YAF+E+ +S + A
Sbjct: 48 PDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRA 107
Query: 248 YLKMDNVLID 257
+ + +++D
Sbjct: 108 WRDANKLILD 117
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 132 (51.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LF+ LN T+++ LE +FS++G+++ V++D+ T S + FV F+NP +DA
Sbjct: 4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAM 63
Query: 249 LKMDNVLIDDRRI 261
+ M+ +D R+I
Sbjct: 64 MAMNGKAVDGRQI 76
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 129 (50.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV LN T+++ LE +FS++G+V V++D+ + S + FV F+NP+ +DA
Sbjct: 5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAM 64
Query: 249 LKMDNVLIDDRRI 261
+ M+ +D R+I
Sbjct: 65 MAMNGKSVDGRQI 77
>UNIPROTKB|Q1LZH0 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 GeneTree:ENSGT00530000063750
EMBL:BC116002 IPI:IPI00730647 RefSeq:NP_001069024.1 UniGene:Bt.5294
ProteinModelPortal:Q1LZH0 STRING:Q1LZH0 PRIDE:Q1LZH0
Ensembl:ENSBTAT00000010602 GeneID:512142 KEGG:bta:512142 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 InParanoid:Q1LZH0 KO:K13155
OMA:QHEVFVD OrthoDB:EOG4MSD0C NextBio:20870261 Uniprot:Q1LZH0
Length = 245
Score = 139 (54.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T ++ L+ +FSR+G + ++RD VTG S YAF+E+ + +S A
Sbjct: 49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>UNIPROTKB|Q16560 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0003723 HSSP:Q9V535
eggNOG:COG0724 GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
EMBL:U44798 EMBL:U44799 EMBL:AK290127 EMBL:BC009622 EMBL:BC047678
EMBL:BC054034 EMBL:BC093671 EMBL:BC111955 EMBL:BK005197
IPI:IPI00007576 IPI:IPI00377030 PIR:G02371 RefSeq:NP_073208.1
RefSeq:NP_851030.1 UniGene:Hs.632738 ProteinModelPortal:Q16560
SMR:Q16560 STRING:Q16560 PhosphoSite:Q16560 DMDM:74754517
PRIDE:Q16560 DNASU:11066 Ensembl:ENST00000350887
Ensembl:ENST00000412157 Ensembl:ENST00000526639 GeneID:11066
KEGG:hsa:11066 UCSC:uc001ufb.1 UCSC:uc021rfv.1
GeneCards:GC12P123891 HGNC:HGNC:30852 neXtProt:NX_Q16560
PharmGKB:PA164726115 InParanoid:Q16560 ChiTaRS:SNRNP35
GenomeRNAi:11066 NextBio:42065 Bgee:Q16560 CleanEx:HS_SNRNP35
Genevestigator:Q16560 Uniprot:Q16560
Length = 246
Score = 139 (54.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T +D L+ +FSR+G + ++RD VTG S YAF+E+ ++ A
Sbjct: 49 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>UNIPROTKB|I3LN96 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 KO:K13155 OMA:QHEVFVD EMBL:CU468910
RefSeq:XP_003359137.1 Ensembl:ENSSSCT00000023937 GeneID:100626152
KEGG:ssc:100626152 Uniprot:I3LN96
Length = 246
Score = 138 (53.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T ++ L+ +FSR+G + ++RD VTG S YAF+E+ +S A
Sbjct: 49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERSLLKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>RGD|1310724 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35 (U11/U12)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310724
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724 GO:GO:0005689 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OrthoDB:EOG4MSD0C
EMBL:BC086435 IPI:IPI00189830 RefSeq:NP_001014149.1
UniGene:Rn.79076 ProteinModelPortal:Q5U1W5 STRING:Q5U1W5
GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724 InParanoid:Q5U1W5
NextBio:674154 Genevestigator:Q5U1W5 Uniprot:Q5U1W5
Length = 244
Score = 137 (53.3 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T ++ L+ +FSR+G + ++RD VTG S YAF+E+ ++ A
Sbjct: 49 PLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>UNIPROTKB|Q5U1W5 [details] [associations]
symbol:Snrnp35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310724 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724
GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374 HOVERGEN:HBG104583
KO:K13155 OrthoDB:EOG4MSD0C EMBL:BC086435 IPI:IPI00189830
RefSeq:NP_001014149.1 UniGene:Rn.79076 ProteinModelPortal:Q5U1W5
STRING:Q5U1W5 GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724
InParanoid:Q5U1W5 NextBio:674154 Genevestigator:Q5U1W5
Uniprot:Q5U1W5
Length = 244
Score = 137 (53.3 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T ++ L+ +FSR+G + ++RD VTG S YAF+E+ ++ A
Sbjct: 49 PLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 137 (53.3 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T ++ L+ +FSR+G + ++RD VTG S YAF+E+ +S A
Sbjct: 49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAFIEYKEERSLIKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>MGI|MGI:1923417 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 HSSP:Q14103
GeneTree:ENSGT00530000063750 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
ChiTaRS:SNRNP35 EMBL:AK018232 EMBL:AK039064 EMBL:BC043031
EMBL:BC058361 IPI:IPI00135531 RefSeq:NP_083808.1 UniGene:Mm.156035
ProteinModelPortal:Q9D384 SMR:Q9D384 STRING:Q9D384
PhosphoSite:Q9D384 PRIDE:Q9D384 Ensembl:ENSMUST00000031349
Ensembl:ENSMUST00000111453 GeneID:76167 KEGG:mmu:76167
UCSC:uc008zpy.1 InParanoid:Q9D384 NextBio:344705 Bgee:Q9D384
Genevestigator:Q9D384 Uniprot:Q9D384
Length = 244
Score = 136 (52.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T ++ L+ +FSR+G + ++RD VTG S YAF+E+ ++ A
Sbjct: 49 PLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKA 108
Query: 248 YLKMDNVLIDDRRI 261
Y D ++ID I
Sbjct: 109 YRDADGLVIDQHEI 122
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 140 (54.3 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++P SDDD++ +F FG++ C + RD TG Y F+E+D +
Sbjct: 183 AEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQ 242
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 243 SAQDAVSSMN 252
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 117 (46.2 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 117 (46.2 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 117 (46.2 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>POMBASE|SPAC19A8.13 [details] [associations]
symbol:usp101 "U1 snRNP-associated protein Usp101
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
GO:GO:0030619 Uniprot:O13829
Length = 261
Score = 132 (51.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P +F+ +L+ T + D+E F+R+G + V+R+KVTG S+ YAFV F+ + + A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 248 YLKMDNVLIDDRRI 261
Y ++++ RRI
Sbjct: 158 YKASAGLMLNGRRI 171
>TAIR|locus:2049339 [details] [associations]
symbol:AT2G21690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC007019 HOGENOM:HOG000276232 EMBL:AC007119
HSSP:Q14103 IPI:IPI00516548 PIR:B84604 RefSeq:NP_179762.1
UniGene:At.52858 ProteinModelPortal:Q9SJ28 SMR:Q9SJ28
EnsemblPlants:AT2G21690.1 GeneID:816707 KEGG:ath:AT2G21690
TAIR:At2g21690 eggNOG:NOG254172 InParanoid:Q9SJ28 OMA:RSKCVNV
PhylomeDB:Q9SJ28 ProtClustDB:CLSN2913216 ArrayExpress:Q9SJ28
Genevestigator:Q9SJ28 Uniprot:Q9SJ28
Length = 117
Score = 114 (45.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E FV L+ T + DL IFS+FG V ++I D+ TG S ++ FV F+ KS DA
Sbjct: 6 EYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
Query: 249 LKMD 252
+ MD
Sbjct: 66 MIMD 69
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 113 (44.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 120 GGQWLGGRQI 129
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 112 (44.5 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 112 (44.5 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>UNIPROTKB|F1NJ85 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 OMA:QHEVFVD EMBL:AADN02034882
IPI:IPI00586472 ProteinModelPortal:F1NJ85
Ensembl:ENSGALT00000005257 Uniprot:F1NJ85
Length = 245
Score = 128 (50.1 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +LN T+++ L+ +FSR+G + ++RD VTG S YAF+E+ ++ A
Sbjct: 54 PHLTLFVARLNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKA 113
Query: 248 YLKMDNVLIDDRRI 261
+ + ++ID +
Sbjct: 114 HRDANRLVIDQHEV 127
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 111 (44.1 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E +LF+ LN T++ LE FS FG ++ V++D+ T S + F+ F NP+ DA
Sbjct: 5 EGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAM 64
Query: 249 LKMDNVLIDDRRI 261
M+ +D R+I
Sbjct: 65 RPMNGKSLDGRQI 77
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 118 (46.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LF+ LN T++D LE F+++G+++ V++D+ T S + FV F+N +DA
Sbjct: 4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAM 63
Query: 249 LKMDNVLIDDRRI 261
+ M+ +D R+I
Sbjct: 64 MAMNGKSVDGRQI 76
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 133 (51.9 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++P SDDD++ +F FGK+ C + R+ TG + F+E++ P+
Sbjct: 176 AEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQ 235
Query: 243 SCEDAYLKMD 252
S DA M+
Sbjct: 236 SSLDAVSSMN 245
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 133 (51.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 181 PEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDN 240
P+ + +F+ LN T+D L+ FS+FG+V C V+RD TG S + F+ F +
Sbjct: 101 PQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKD 160
Query: 241 PKSCEDAYLK---MDNVLIDDRRIHARGEE 267
PK+ +K +D +ID +R R E+
Sbjct: 161 PKTVNTVMVKEHYLDGKIIDPKRAIPRDEQ 190
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 129 (50.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 201 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 260
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 261 SSQDAVSSMN 270
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 129 (50.5 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 217 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 276
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 277 SSQDAVSSMN 286
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 129 (50.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 176 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 235
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 236 SSQDAVSSMN 245
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 117 (46.2 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 108 (43.1 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LFV +L+ T+D L +FS FG++ +IRD T + F+ FD+ A +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 252 DNVLIDDRRI 261
D ++D R I
Sbjct: 69 DGKIVDGRLI 78
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 111 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 170
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 171 SSQDAVSSMN 180
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LF+ L+ T++ LE FS++G + +VIRD+ T S + FV F+NP+ +DA
Sbjct: 22 EGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAM 81
Query: 249 LKMDNVLIDDRRI 261
M+ +D R I
Sbjct: 82 AAMNGKQVDGRMI 94
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 107 (42.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ LN T++ LE +F ++G++ +++D+ T S +AFV F++P +DA M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 252 DNVLIDDRRI 261
+ +D + I
Sbjct: 70 NGKSLDGKAI 79
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK- 250
+F+ LN T+DD L F +FG+V C V+RD TG S + F+ F NPK + K
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 251 --MDNVLIDDRRIHARGEE 267
+D +ID +R R E+
Sbjct: 225 HHLDGKIIDPKRAIPREEQ 243
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 117 (46.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 182 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 241
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 242 SSQDAVSSMN 251
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 190 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 249
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 250 SSQDAVSSMN 259
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 190 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 249
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 250 SSQDAVSSMN 259
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 203 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 262
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 263 SSQDAVSSMN 272
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 219 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 278
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 279 SSQDAVSSMN 288
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 220 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 279
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 280 SSQDAVSSMN 289
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 224 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 283
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 284 SSQDAVSSMN 293
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A N ++V ++ SDDD++ +F FGK+ C + RD TG Y F+E++ +
Sbjct: 224 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 283
Query: 243 SCEDAYLKMD 252
S +DA M+
Sbjct: 284 SSQDAVSSMN 293
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 110 (43.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV LN T + LE FS FG ++ V++D+ T S + F+ F NP+ DA
Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAM 64
Query: 249 LKMDNVLIDDRRI 261
M+ +D R+I
Sbjct: 65 RAMNGESLDGRQI 77
>UNIPROTKB|F6W1U9 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090681 HGNC:HGNC:9909
EMBL:AC097104 IPI:IPI01022449 ProteinModelPortal:F6W1U9 SMR:F6W1U9
Ensembl:ENST00000545007 ArrayExpress:F6W1U9 Bgee:F6W1U9
Uniprot:F6W1U9
Length = 147
Score = 98 (39.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
L++ L P T+D DL + +GK+ + I DK T Y FV+FD+P + + A
Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA 113
Score = 46 (21.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 116 PYEDLPELVYPPSPEPTRELLANGLIGADE 145
PY L + + PPSP + ++G G D+
Sbjct: 23 PYVSLAQQMAPPSPSNSTPNSSSGSNGNDQ 52
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 117 (46.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 115 (45.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 115 (45.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 115 (45.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>TAIR|locus:2100840 [details] [associations]
symbol:AT3G04500 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC022287 eggNOG:NOG306795
HSSP:O08583 HOGENOM:HOG000239273 EMBL:BT005571 EMBL:AK118315
IPI:IPI00527216 RefSeq:NP_187100.1 UniGene:At.40828
ProteinModelPortal:Q9M837 SMR:Q9M837 PaxDb:Q9M837 PRIDE:Q9M837
EnsemblPlants:AT3G04500.1 GeneID:819606 KEGG:ath:AT3G04500
TAIR:At3g04500 InParanoid:Q9M837 OMA:SNWRERT PhylomeDB:Q9M837
ProtClustDB:CLSN2684283 ArrayExpress:Q9M837 Genevestigator:Q9M837
Uniprot:Q9M837
Length = 245
Score = 121 (47.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/83 (38%), Positives = 40/83 (48%)
Query: 188 PENV--LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
PEN LF L +DD L F+RF N +VIRDK TG + Y FV F NP
Sbjct: 133 PENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLA 192
Query: 246 DAYLKMDNVLIDDRRIHARGEEW 268
A +M+ + +R I R W
Sbjct: 193 AALKEMNGKYVGNRPIKLRKSSW 215
>DICTYBASE|DDB_G0278349 [details] [associations]
symbol:tra2 "putative transformer-2 protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0278349 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 HSSP:P62995 KO:K12897 eggNOG:NOG297815
RefSeq:XP_642304.1 ProteinModelPortal:Q54Y98 PRIDE:Q54Y98
EnsemblProtists:DDB0233352 GeneID:8621510 KEGG:ddi:DDB_G0278349
OMA:GIHPRLT Uniprot:Q54Y98
Length = 326
Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+ A P NVL V L P T + DL+ FSRFGK++ ++I D+ TG S + FV F+N
Sbjct: 106 ANTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENK- 164
Query: 243 SCEDAYLKMDNVLIDDRRIHAR 264
EDA + D ++H +
Sbjct: 165 --EDAVRAKEEC--QDLQLHGK 182
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 103 (41.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMD 252
DA + M+
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 103 (41.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMD 252
DA + M+
Sbjct: 62 DAMMAMN 68
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 110 (43.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV LN T + LE FS FG ++ V++D+ T S + F+ F NP+ DA
Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAM 64
Query: 249 LKMDNVLIDDRRI 261
M+ +D R+I
Sbjct: 65 RAMNGESLDGRQI 77
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 117 (46.2 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 124 (48.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP----KSCEDA 247
+FV ++P+ ++++ + FS+FGK+ C+++ DK TG S + FV +D+P K C +
Sbjct: 248 IFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNK 307
Query: 248 YLKMDNVLIDDRRIHARGE 266
YL + ++ +R RG+
Sbjct: 308 YLTLKGKAMEVKRAAPRGQ 326
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 117 (46.2 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 115 (45.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+ ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A ++ + + + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 123 (48.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P+ L V L S D++ +F FG+V C++IRDKVTG SL Y FV + + E A
Sbjct: 108 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 167
Query: 248 YLKMDNVLIDDRRI 261
++ + + ++ I
Sbjct: 168 INALNGLRLQNKTI 181
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 101 (40.6 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ LN T++ LE +F ++G++ +++D+ T S +AFV F++P +DA M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 252 DNVLIDD 258
+ + D
Sbjct: 70 NGKMTVD 76
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 101 (40.6 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
++V L+P T+DD L FS +G V V+RD+ T S + FV + + E A M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 252 DNVLIDDRRIHAR 264
D ++ RR+ +
Sbjct: 65 DGKELNGRRVSVK 77
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 111 (44.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV L+ T + LE +FS++G++ V++D+ T S + FV F+N + +DA
Sbjct: 5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAM 64
Query: 249 LKMDNVLIDDRRI 261
M+ +D R+I
Sbjct: 65 AGMNGKTVDGRQI 77
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 100 (40.3 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ LN T++ LE +F ++G++ +++D+ T S +AFV F++P +DA M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 252 DNVLI 256
+ ++
Sbjct: 72 NGKMM 76
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 102 (41.0 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P + +F+ L+ TS D L FS+FG++ C V+RD T S + FV F +P S D
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV-DK 73
Query: 248 YLKMDNVLIDDRRI 261
L + +D + I
Sbjct: 74 VLGQPHHELDSKTI 87
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 99 (39.9 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+F+ L+ + L FS FG + C+V+ D+ S YAFV F+ ++ + A KM
Sbjct: 45 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 102
Query: 252 DNVLIDDRRI 261
+ +L++DR++
Sbjct: 103 NGMLLNDRKV 112
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 99 (39.9 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ LN T++ LE +F ++G++ +++D+ T S +AFV F++P +DA M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 252 D 252
+
Sbjct: 72 N 72
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD 252
SDDD++ +F FGK+ C + RD TG Y F+E++ +S +DA M+
Sbjct: 108 SDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 158
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 98 (39.6 bits), Expect = 0.00012, P = 0.00012
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
N +FV +L + L+ FS+FG + C V+ D+VT S + FV+F++ +S ++A +
Sbjct: 4 NKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNA-I 62
Query: 250 KMDNVLIDDRRI 261
DN I+ R++
Sbjct: 63 NSDNE-INGRKL 73
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 98 (39.6 bits), Expect = 0.00012, P = 0.00012
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L+V LN D DLE F+ +G V +V+ D+ TG S + FVE + + + A +
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 252 DNVLIDDRRI 261
+ +D R +
Sbjct: 65 NGKEMDGRNL 74
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
A+A P LF+ LN TS+ LE FS+FG+++ +++D+ T S +AFV ++NP
Sbjct: 2 AEADRPGK-LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPG 60
Query: 243 SCEDAYLKMDNVLIDDRRI 261
+DA +M+ +D + I
Sbjct: 61 DAKDAAREMNGKPLDGKPI 79
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 246 DAYLKMDNVLIDDRRI 261
DA + M+ +D R+I
Sbjct: 62 DAMMAMNGKSVDGRQI 77
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 109 (43.4 bits), Expect = 0.00014, P = 0.00014
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E L V L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +DA
Sbjct: 5 EGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 249 LKMDNVLIDDRRI 261
+ M+ +D R+I
Sbjct: 65 MAMNGKSVDGRQI 77
>UNIPROTKB|F1NDG5 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:AADN02030982 IPI:IPI00680068
Ensembl:ENSGALT00000033037 ArrayExpress:F1NDG5 Uniprot:F1NDG5
Length = 56
Score = 97 (39.2 bits), Expect = 0.00016, P = 0.00016
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDN 240
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N
Sbjct: 6 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 54
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 97 (39.2 bits), Expect = 0.00016, P = 0.00016
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L++ L+ S++ L ++FS FGKV + +D G+S +AF+EF++ S A L M
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAMLHM 77
Query: 252 DNVLIDDR 259
D LI +
Sbjct: 78 DGRLIGQK 85
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 181 PEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDN 240
P A + P LFV ++N TS+ L F +GK+ ++ D+ G YAF+E+ +
Sbjct: 96 PRA-SEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEA-GKPRGYAFIEYSD 153
Query: 241 PKSCEDAYLKMDNVLIDDRRI---HARGEEWNMW 271
AY K D + +D +R+ + RG W
Sbjct: 154 KAEMHTAYKKADGIKVDGKRLVVDYERGRTQKTW 187
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P LFV +L+ T++D L + S++G++ ++R VTG S Y FVE++ K A
Sbjct: 62 PYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRA 121
Query: 248 YLKMDNVLIDDRRI 261
Y + LID R I
Sbjct: 122 YEDAHHSLIDGREI 135
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 106 (42.4 bits), Expect = 0.00018, P = 0.00018
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV LN T + LE FS FG ++ V++D+ T S + F+ F NP+ D
Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVM 64
Query: 249 LKMDNVLIDDRRI 261
M+ +D R+I
Sbjct: 65 RAMNGESLDGRQI 77
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 109 (43.4 bits), Expect = 0.00018, P = 0.00018
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E L V L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +DA
Sbjct: 5 EGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 249 LKMDNVLIDDRRI 261
+ M+ +D R+I
Sbjct: 65 MAMNGKSVDGRQI 77
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P+ LF+ +L+ S+ L+ F +GK+ ++I DK YAF+EF++ KS DA
Sbjct: 96 PKKTLFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPR-GYAFIEFEHTKSMNDA 154
Query: 248 YLKMDNVLIDDRRI 261
Y D I++RRI
Sbjct: 155 YKLADGKKIENRRI 168
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P+ LF+ +L+ S+ L+ F +GK+ ++I DK YAF+EF++ KS DA
Sbjct: 96 PKKTLFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPR-GYAFIEFEHTKSMNDA 154
Query: 248 YLKMDNVLIDDRRI 261
Y D I++RRI
Sbjct: 155 YKLADGKKIENRRI 168
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 112 (44.5 bits), Expect = 0.00020, P = 0.00020
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + DD+ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 177 GGQWLGGRQI 186
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P S DD+ F+ FGK++ V++D TG S Y F+ F N E A +M
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 252 DNVLIDDRRI 261
+ + R+I
Sbjct: 159 NGQWLGGRQI 168
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS D L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQ 88
>UNIPROTKB|E7EPF2 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
Uniprot:E7EPF2
Length = 128
Score = 95 (38.5 bits), Expect = 0.00026, P = 0.00026
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
L++ L P T+D DL + +GK+ + I DK T Y FV+FD+P + + A
Sbjct: 31 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKA 86
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 95 (38.5 bits), Expect = 0.00026, P = 0.00026
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
+N ++V L+ + D+L+ F ++G++ ++I D+ TG S +AF+ + + ++A
Sbjct: 17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 249 LKMDNVLIDDRRI 261
K + + + R+I
Sbjct: 77 SKANGIDLQGRKI 89
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 95 (38.5 bits), Expect = 0.00026, P = 0.00026
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
+N ++V L+ + D+L+ F ++G++ ++I D+ TG S +AF+ + + ++A
Sbjct: 17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 249 LKMDNVLIDDRRI 261
K + + + R+I
Sbjct: 77 SKANGIDLQGRKI 89
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 105 (42.0 bits), Expect = 0.00027, P = 0.00027
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV LN T + LE FS FG ++ V++D+ T S + F+ F NP+ +A
Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAM 64
Query: 249 LKMDNVLIDDRRI 261
M+ +D R+I
Sbjct: 65 RAMNGESLDGRQI 77
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L V L + ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A +
Sbjct: 69 LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 128
Query: 252 DNVLIDDRRI 261
+ + + + I
Sbjct: 129 NGLRLQTKTI 138
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 179 DLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEF 238
++P N L V L + ++L+ +F G++ C+++RDK+TG SL Y FV +
Sbjct: 58 EMPNGSEDSKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 116
Query: 239 DNPKSCEDAYLKMDNVLIDDRRI 261
PK E A ++ + + + I
Sbjct: 117 MEPKDAEKAINTLNGLRLQTKTI 139
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+ ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A ++ + + + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
>DICTYBASE|DDB_G0292698 [details] [associations]
symbol:DDB_G0292698 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
Length = 306
Score = 114 (45.2 bits), Expect = 0.00031, P = 0.00031
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
N L V LNP T + DL F+ GKV C ++ D T +S + FV + + +DA
Sbjct: 71 NTLHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQDAIQ 130
Query: 250 KMDNVLIDDRRI 261
++D+ ID I
Sbjct: 131 RLDSTKIDGNTI 142
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 109 (43.4 bits), Expect = 0.00031, P = 0.00031
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E L V L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +DA
Sbjct: 5 EGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 249 LKMDNVLIDDRRI 261
+ M+ +D R+I
Sbjct: 65 MAMNGKSVDGRQI 77
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ L T +DDL+ +F ++G+V+ +V+ DK TG +A VEF P++ AY +
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
Query: 252 DNVLIDDRRIHAR-GEE 267
D + R +H G+E
Sbjct: 341 DGYVFKGRMMHILPGDE 357
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+ ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A ++ + + + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+ ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A ++ + + + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+ ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A ++ + + + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+ ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A ++ + + + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 111 (44.1 bits), Expect = 0.00033, P = 0.00033
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS + L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD L+D R + +
Sbjct: 66 RDAEDAMDAMDGALLDGRELRVQ 88
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 94 (38.1 bits), Expect = 0.00034, P = 0.00034
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 191 VLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK 250
++ + ++ DD ++ +F RFG++ + D+ TG YAF+E++N + A +
Sbjct: 24 IIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDE 83
Query: 251 MDNVLIDDRRIH 262
MD ++ ++ IH
Sbjct: 84 MDGTMLLNQEIH 95
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 94 (38.1 bits), Expect = 0.00034, P = 0.00034
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
+F+ L+ TS D L FS+FG++ C V+RD T S + FV F +P S +
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 94 (38.1 bits), Expect = 0.00034, P = 0.00034
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 191 VLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK 250
++ + ++ DD ++ +F RFG++ + D+ TG YAF+E++N + A +
Sbjct: 24 IIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDE 83
Query: 251 MDNVLIDDRRIH 262
MD ++ ++ IH
Sbjct: 84 MDGTMLLNQEIH 95
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 98 (39.6 bits), Expect = 0.00037, P = 0.00037
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LFV L+ T D L+ F+ FG+V VI D+ TG S + FV F S +A +M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 252 DNVLIDDRRI 261
D ++ R+I
Sbjct: 97 DGKELNGRQI 106
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+ ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A ++ + + + I
Sbjct: 79 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 138
>DICTYBASE|DDB_G0268004 [details] [associations]
symbol:snrp70 "U1 small nuclear ribonucleoprotein 70
kDa protein" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0268004 GenomeReviews:CM000150_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724
HSSP:Q14103 GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
RefSeq:XP_647483.1 ProteinModelPortal:Q55FQ0 STRING:Q55FQ0
EnsemblProtists:DDB0233134 GeneID:8616290 KEGG:ddi:DDB_G0268004
OMA:YLMEPAP Uniprot:Q55FQ0
Length = 459
Score = 116 (45.9 bits), Expect = 0.00037, P = 0.00037
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDS-LQYAFVEFDNPKSCED 246
P +FV +++ T+ LE F +FG + +++D + YAF+EF+ + +
Sbjct: 97 PYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAFIEFERERDMKA 156
Query: 247 AYLKMDNVLIDDRRI 261
AY + D + IDDRRI
Sbjct: 157 AYKQADGMKIDDRRI 171
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+ ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A ++ + + + I
Sbjct: 80 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 139
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+ ++L+ +F G++ C+++RDK+TG SL Y FV + +PK E A ++ + + + I
Sbjct: 80 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 139
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 106 (42.4 bits), Expect = 0.00040, P = 0.00040
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 193 FVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD 252
FV L T+D+DL+ FS+FG V ++I D+ +G S + FV F + K+ DA +M+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 253 NVLIDDRRI 261
+D R I
Sbjct: 69 GKELDGRVI 77
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 107 (42.7 bits), Expect = 0.00048, P = 0.00048
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LF+ L+ T++ LE FS++G + V R++ T S + FV F+NP +DA
Sbjct: 4 EGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDAL 63
Query: 249 LKMDNVLIDDRRI 261
M+ +D R I
Sbjct: 64 EGMNGKSVDGRTI 76
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 109 (43.4 bits), Expect = 0.00049, P = 0.00049
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FG+++ V++D TG S Y FV F N E+A +M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 168 GGQWLGGRQI 177
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 113 (44.8 bits), Expect = 0.00050, P = 0.00050
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 202 SDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
S D+L +FS G+V ++IRDKV G SL Y FV + NP E A ++ + + + I
Sbjct: 46 SQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTI 105
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 109 (43.4 bits), Expect = 0.00054, P = 0.00054
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 187 PPENV-----LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
PP +V L V L TS + L +F ++G+V + RD+ T +S +AFV F +
Sbjct: 6 PPPDVDGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 242 KSCEDAYLKMDNVLIDDRRIHAR 264
+ EDA MD ++D R + +
Sbjct: 66 RDAEDAMDAMDGAILDGRELRVQ 88
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 176 GGQWLGGRQI 185
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 113 (44.8 bits), Expect = 0.00058, P = 0.00058
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 176 GGQWLGGRQI 185
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 113 (44.8 bits), Expect = 0.00059, P = 0.00059
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 159 GGQWLGGRQI 168
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 113 (44.8 bits), Expect = 0.00060, P = 0.00060
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 159 GGQWLGGRQI 168
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 175 GGQWLGGRQI 184
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 176 GGQWLGGRQI 185
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 176 GGQWLGGRQI 185
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 176 GGQWLGGRQI 185
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 176 GGQWLGGRQI 185
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FGK++ V++D TG S Y FV F N E+A + M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 176 GGQWLGGRQI 185
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 103 (41.3 bits), Expect = 0.00069, P = 0.00069
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV LN T + LE FS FG ++ V++D+ T S + F+ F NP+ +A
Sbjct: 5 EGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAM 64
Query: 249 LKMDNVLIDDRRI 261
M+ +D R+I
Sbjct: 65 RAMNGESLDGRQI 77
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 91 (37.1 bits), Expect = 0.00072, P = 0.00072
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+F+ +LNP + D+E F +G++ ++ R + FVEF++P+ +DA ++
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG--------FGFVEFEDPRDADDAVYEL 57
Query: 252 DNVLIDDRRI---HAR 264
D + R+ HAR
Sbjct: 58 DGKELCSERVTIEHAR 73
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 91 (37.1 bits), Expect = 0.00072, P = 0.00072
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+F+ +LNP + D+E F +G++ ++ R + FVEF++P+ +DA ++
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG--------FGFVEFEDPRDADDAVYEL 57
Query: 252 DNVLIDDRRI---HAR 264
D + R+ HAR
Sbjct: 58 DGKELCSERVTIEHAR 73
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 91 (37.1 bits), Expect = 0.00072, P = 0.00072
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ LN T++ L+ +F + G ++ +I+D+ T S +AF+ F+NP ++A M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 252 DNVLIDDRRIHAR 264
+ ++ D + +R
Sbjct: 69 NGKMMVDTLLISR 81
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 91 (37.1 bits), Expect = 0.00072, P = 0.00072
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+F+ +LNP + D+E F +G++ ++ R + FVEF++P+ +DA ++
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG--------FGFVEFEDPRDADDAVYEL 57
Query: 252 DNVLIDDRRI---HAR 264
D + R+ HAR
Sbjct: 58 DGKELCSERVTIEHAR 73
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 105 (42.0 bits), Expect = 0.00076, P = 0.00076
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P L V L+ T++ DL +FSR+G ++ V+ D+ TG S +AFV F+ ++A
Sbjct: 16 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75
Query: 248 YLKMDNVLIDDRRI 261
+ + + +D RRI
Sbjct: 76 MERANGMELDGRRI 89
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 105 (42.0 bits), Expect = 0.00079, P = 0.00078
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P L V L+ T++ DL +FSR+G ++ V+ D+ TG S +AFV F+ ++A
Sbjct: 16 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75
Query: 248 YLKMDNVLIDDRRI 261
+ + + +D RRI
Sbjct: 76 MERANGMELDGRRI 89
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 112 (44.5 bits), Expect = 0.00081, P = 0.00081
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + DD+ F+ FG+++ V++D TG S Y FV F N E+A +M
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 158 GGQWLGGRQI 167
>UNIPROTKB|Q47X92 [details] [associations]
symbol:CPS_3920 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000276232 RefSeq:YP_270578.1 ProteinModelPortal:Q47X92
STRING:Q47X92 GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731
eggNOG:NOG258387 OMA:HELEGRQ ProtClustDB:CLSK913470
BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
Length = 78
Score = 90 (36.7 bits), Expect = 0.00094, P = 0.00094
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L V L+ T++ +L I+FS G V C ++ D+ T S +AFVE N + A +
Sbjct: 3 LLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSSL 62
Query: 252 DNVLIDDRRIHAR 264
+ +I +
Sbjct: 63 HETRVAKNKIRVK 75
>TIGR_CMR|CPS_3920 [details] [associations]
symbol:CPS_3920 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR HOGENOM:HOG000276232
RefSeq:YP_270578.1 ProteinModelPortal:Q47X92 STRING:Q47X92
GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731 eggNOG:NOG258387
OMA:HELEGRQ ProtClustDB:CLSK913470
BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
Length = 78
Score = 90 (36.7 bits), Expect = 0.00094, P = 0.00094
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L V L+ T++ +L I+FS G V C ++ D+ T S +AFVE N + A +
Sbjct: 3 LLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSSL 62
Query: 252 DNVLIDDRRIHAR 264
+ +I +
Sbjct: 63 HETRVAKNKIRVK 75
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 109 (43.4 bits), Expect = 0.00099, P = 0.00099
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P + +D++ F+ FG+++ V++D TG S Y FV F N E+A +M
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 252 DNVLIDDRRI 261
+ R+I
Sbjct: 153 GGQWLGGRQI 162
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 309 268 0.00096 114 3 11 22 0.48 33
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 159
No. of states in DFA: 618 (66 KB)
Total size of DFA: 235 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.32u 0.15s 24.47t Elapsed: 00:00:01
Total cpu time: 24.33u 0.15s 24.48t Elapsed: 00:00:01
Start: Thu Aug 15 13:30:47 2013 End: Thu Aug 15 13:30:48 2013
WARNINGS ISSUED: 1