RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15676
(309 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 62.6 bits (152), Expect = 2e-13
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L+V L+P ++ L FS G + V RD +T SL YA+V F P E A M
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 252 DNVLIDDRRIH 262
+ +I + +
Sbjct: 63 NFDVIKGKPVR 73
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 61.0 bits (148), Expect = 1e-12
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 178 GDLPEADAAPPENVLFVCKLNP-VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFV 236
G + D + +F+ LN V D+E IFS++GK+ C V + +AFV
Sbjct: 4 GSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKG--------FAFV 55
Query: 237 EFDNPKSCEDAYLKMDNVLIDDRRIH 262
++ N ++ A D +I + +
Sbjct: 56 QYVNERNARAAVAGEDGRMIAGQVLD 81
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 60.5 bits (146), Expect = 1e-12
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
P L V L+ T++ DL +FS++G + ++ D+ + S +AFV F+N ++
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66
Query: 247 AYLKMDNVLIDDRRIH 262
A + + + +D RRI
Sbjct: 67 AKERANGMELDGRRIR 82
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 60.4 bits (146), Expect = 1e-12
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L+V L +DD L+ IF ++G + ++RDK+TG AFV ++ + ++A +
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 68
Query: 252 DNVLID--DRRIHAR 264
+NV+ + + + R
Sbjct: 69 NNVIPEGGSQPLSVR 83
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 59.2 bits (143), Expect = 2e-12
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+F+ L+ T+ + L F +FG+V C V+RD +T S + FV F + + L
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV-LAQ 61
Query: 252 DNVLIDDRRIHAR 264
+D + I +
Sbjct: 62 SRHELDSKTIDPK 74
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 60.4 bits (146), Expect = 3e-12
Identities = 17/106 (16%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 187 PPE--NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSC 244
PPE +L++ L + +++ IF ++G + R T ++ A+V +++
Sbjct: 3 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQI---RVGNTPETRGTAYVVYEDIFDA 59
Query: 245 EDAYLKMDNVLIDDRRIH-ARGEEWNMWKRREEEEEKEEIDEKKEE 289
++A + + +R + +++ + ++++E++ KE+
Sbjct: 60 KNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEK 105
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 59.2 bits (143), Expect = 5e-12
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRD-KVTGDSLQYAFVEFDNPKSCE 245
+ + V + + ++ +FS FG++ + + TG + FV+F + +
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 246 DAYLKMDN-VLIDDRRIH 262
A+ + + + RR+
Sbjct: 66 KAFNALCHSTHLYGRRLV 83
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 58.5 bits (141), Expect = 7e-12
Identities = 12/80 (15%), Positives = 30/80 (37%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
+ P ++ V + S D++ F + + ++ G A V F++
Sbjct: 3 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 62
Query: 243 SCEDAYLKMDNVLIDDRRIH 262
A + +++ I R++
Sbjct: 63 EATAAVIDLNDRPIGSRKVK 82
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 56.5 bits (136), Expect = 3e-11
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L V L +D +L +F G +N C ++RD TG S YAFV+F + + A +
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 252 DNVLIDDRRIH 262
+ + + ++R+
Sbjct: 65 NGITVRNKRLK 75
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 56.1 bits (135), Expect = 3e-11
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+P T ++ + F FG+V E+ D T + F+ F + + ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI-MEK 60
Query: 252 DNVLIDDRRIHAR 264
+ + +
Sbjct: 61 KYHNVGLSKCEIK 73
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 56.9 bits (137), Expect = 3e-11
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L+V L+ T+++ + +FS+ G + + DK+ + + FVE+ + E+A +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 252 DNVLIDDRRIH 262
+ +DDR I
Sbjct: 70 NGTRLDDRIIR 80
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 55.3 bits (133), Expect = 7e-11
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L V L+ SD D++ +F+ FG + V D+ +G SL A V F+ A +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQY 61
Query: 252 DNVLIDDRRIH 262
+ V +D R ++
Sbjct: 62 NGVPLDGRPMN 72
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 55.4 bits (133), Expect = 1e-10
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
+ ++V L+ S+ L +F + G V + +D+VTG Y FVEF + + +
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 66
Query: 247 AYLKMDNVLIDDRRI---HARGEEWNM 270
A MD + + + I A N+
Sbjct: 67 AIKIMDMIKLYGKPIRVNKASAHNKNL 93
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 54.6 bits (131), Expect = 1e-10
Identities = 17/71 (23%), Positives = 37/71 (52%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ L +DD ++ + + FG + +++D TG S YAF E+ + + A +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 252 DNVLIDDRRIH 262
+ + + D+++
Sbjct: 64 NGMQLGDKKLL 74
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 55.2 bits (132), Expect = 2e-10
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 187 PPENVLFVCKLNP-----VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
+ L C N + E +F + K + + + + F NP
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNP 56
Query: 242 KSCEDAYLKMDNVLIDDRRIHA 263
S DA L++ + +
Sbjct: 57 LSAADARLRLHKTEFLGKEMKL 78
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 54.2 bits (130), Expect = 2e-10
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+F+ L+ T+ DL+ FS+FG+V C + D +TG S + FV F +S + +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV-MDQ 60
Query: 252 DNVLIDDRRIHAR 264
++ + I +
Sbjct: 61 KEHKLNGKVIDPK 73
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 54.7 bits (131), Expect = 2e-10
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A + VL+V L D L F FG + ++ D T +AFVEF+ +
Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61
Query: 246 DAYLKMDNVLIDDRRIH 262
A M+ + R I
Sbjct: 62 AAIDNMNESELFGRTIR 78
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 53.9 bits (129), Expect = 2e-10
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDK---VTGDSLQYAFVEFDNPKSCEDAY 248
LF+ LN T+++ L+ +FS+ G + C + + K S+ + FVE+ P+ + A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 249 LKMDNVLIDDRRIH 262
++ +D ++
Sbjct: 61 KQLQGHTVDGHKLE 74
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 53.6 bits (128), Expect = 3e-10
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L V L + ++ +F G++ C+++RDK+TG SL Y FV + +PK E A +
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 252 DNVLIDDRRIH 262
+ + + + I
Sbjct: 65 NGLRLQTKTIK 75
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 53.6 bits (128), Expect = 5e-10
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
+ LFV L+ +S++DLE +FS +G ++ D +T +AFV F P+
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64
Query: 246 DAYLKMDNVLIDDRRIH 262
AY ++D + R +H
Sbjct: 65 KAYAEVDGQVFQGRMLH 81
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 52.3 bits (125), Expect = 1e-09
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 188 PENV--LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
PE + LF+ L+ T+D+ L F ++G + C V+RD T S + FV + + +
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 246 DAYLKMDNVLIDDRRI 261
A + +D R +
Sbjct: 63 AA-MNARPHKVDGRVV 77
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.4 bits (125), Expect = 1e-09
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A + V L+ T + DL+ +F FG ++ + +DK TG S +AF+ F +
Sbjct: 5 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 64
Query: 246 DAYLKMDNVLIDDRRIH 262
A + D ++
Sbjct: 65 RAIAGVSGFGYDHLILN 81
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 51.6 bits (123), Expect = 3e-09
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
P LF+ L D DL +F FG V +V DK T S + FV +DNP S +
Sbjct: 16 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 75
Query: 247 AYLKMDNVLIDDRRIHARGEEWNMWKRREEE 277
A M+ I +R+ + KR + +
Sbjct: 76 AIQSMNGFQIGMKRLKVQ------LKRSKND 100
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 50.8 bits (121), Expect = 4e-09
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L+V L + +LE +FS++G++ ++ D+VTG S F+ FD E+A +
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 252 DNVLIDDR 259
+
Sbjct: 69 NGQKPSGA 76
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 51.2 bits (122), Expect = 4e-09
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 178 GDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVE 237
G + A + ++V L P D+E +F ++G + ++ + +AFVE
Sbjct: 3 GGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP---PFAFVE 59
Query: 238 FDNPKSCEDAYLKMDNVLIDDRRIH 262
F++P+ EDA D D R+
Sbjct: 60 FEDPRDAEDAVYGRDGYDYDGYRLR 84
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 50.5 bits (120), Expect = 4e-09
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
+LFV ++ +D+++ F +G++ + D+ TG S YA VE++ K A
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 250 KMDNVLIDDRRIH 262
++ I + I
Sbjct: 68 ALNGAEIMGQTIQ 80
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 50.7 bits (121), Expect = 5e-09
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKS 243
++P ++ + +D + FS FG++ V +K Y+FV F +S
Sbjct: 13 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHES 66
Query: 244 CEDAYLKMDNVLIDDRRIH 262
A + ++ I+ +
Sbjct: 67 AAHAIVSVNGTTIEGHVVK 85
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 49.7 bits (118), Expect = 6e-09
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L+ T+ +D++ F +FGKV+ ++ DK T + FV F++ E ++
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEI 60
Query: 252 DNVLIDDRRIHAR 264
I+++ + +
Sbjct: 61 HFHEINNKMVECK 73
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 49.7 bits (118), Expect = 7e-09
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV + T + L F ++GK+ E++ D+ +G +AFV FD+ S + +
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI-VIQ 63
Query: 252 DNVLIDDRRIHAR 264
++ R
Sbjct: 64 KYHTVNGHNCEVR 76
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.0 bits (119), Expect = 8e-09
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSC 244
A + L V L T++ DL+ FS FG+V +V +D TG S + FV F ++
Sbjct: 4 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQ 63
Query: 245 EDAYLKMDNVLIDDRRIHAR 264
+ +ID R +
Sbjct: 64 VKVMSQRH--MIDGRWCDCK 81
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 50.0 bits (119), Expect = 8e-09
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 188 PENVLFVCKLNPVTSDDDL-EIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
P + +++ LN D+L + + + F + I + AFV F S +
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 247 AYLKMDNVLIDDRRIH 262
A M D+ +
Sbjct: 62 ALRSMQGFPFYDKPMR 77
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 49.7 bits (118), Expect = 9e-09
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI-RDKVTGDSLQYAFVEFDNPKSCEDAYLK 250
+F+ L+P + L FS FG + I RD TG+S YAF+ F + + + A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 251 MDNVLIDDRRIH 262
M+ + +R I
Sbjct: 61 MNGQYLCNRPIT 72
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 50.1 bits (119), Expect = 9e-09
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
LF+ L+ T+++ L + ++GK+ C V+RD + S + FV F + + A +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA-MAA 81
Query: 252 DNVLIDDRRIHAR 264
ID R + +
Sbjct: 82 RPHSIDGRVVEPK 94
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 48.8 bits (116), Expect = 2e-08
Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
+ LFV L P +++++ +F ++GK + +DK + F+ + E A
Sbjct: 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAK 61
Query: 249 LKMDNVLIDDRRIHAR 264
+++DN+ + +++ R
Sbjct: 62 VELDNMPLRGKQLRVR 77
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 49.3 bits (117), Expect = 2e-08
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 181 PEADAAPPE---NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVE 237
P + +P E +F +L DLE FS GKV +I D+ + S A+VE
Sbjct: 7 PVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVE 66
Query: 238 FDNPKSCEDAYLKMDNVLIDDRRIH 262
F +S + + + I
Sbjct: 67 FCEIQSVP-LAIGLTGQRLLGVPII 90
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 48.9 bits (116), Expect = 2e-08
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 183 ADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
+++ L V + D DL +F +FGK+ E+I ++ S + FV F+N
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSA 62
Query: 243 SCEDAYLKMDNVLIDDRRIH 262
+ A K+ +++ R+I
Sbjct: 63 DADRAREKLHGTVVEGRKIE 82
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 48.2 bits (114), Expect = 4e-08
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 188 PENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDA 247
P F+ L +++ ++ F + + EF++ S A
Sbjct: 14 PPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 73
Query: 248 YLKMDNVLIDDRRIH 262
L ++ + ++RI
Sbjct: 74 -LSLNEESLGNKRIR 87
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 47.9 bits (113), Expect = 4e-08
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 190 NVLFVCKLNPVTSDDDLEIIF---SRFGKVNCCEVIRDKVTGDSLQ---YAFVEFDNPKS 243
N++FV L+ +D ++ +FGK++ + S A+V + +
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED 68
Query: 244 CEDAYLKMDNVLIDDRRIHA 263
A ++NV++D R + A
Sbjct: 69 ALRAIQCVNNVVVDGRTLKA 88
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 47.7 bits (113), Expect = 5e-08
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 182 EADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
+ D +L+V L TS++ +E F+ V + + YAFV F N
Sbjct: 1 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR------DYAFVHFSNR 54
Query: 242 KSCEDAYLKMDNVLIDDRRIH 262
+ +A ++ ++D I
Sbjct: 55 EDAVEAMKALNGKVLDGSPIE 75
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 47.9 bits (113), Expect = 5e-08
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 182 EADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVI--------RDKVTGDSLQY 233
+ D + ++V LN + DDL F + G V + DK TG
Sbjct: 1 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 60
Query: 234 AFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
A V +++P + + A D ++
Sbjct: 61 ATVSYEDPPTAKAAVEWFDGKDFQGSKLK 89
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 47.3 bits (112), Expect = 7e-08
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+F+ L+ + L FS FG + C+V+ D+ S Y FV F+ ++ E A KM
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 68
Query: 252 DNVLIDDRRIH 262
+ +L++DR++
Sbjct: 69 NGMLLNDRKVF 79
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.7 bits (113), Expect = 7e-08
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 203 DDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
++ + ++G+V V + + +V+F + E A + ++N + + IH
Sbjct: 41 EEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99
Query: 263 A 263
A
Sbjct: 100 A 100
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 46.3 bits (109), Expect = 1e-07
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEV-----IRDKVTGDSLQYAFVEFDNPKSCED 246
L+V + +++ + F+ ++ + +AF+EF +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 247 AYLKMDNVLIDDRRIHAR 264
A + D ++ + + R
Sbjct: 64 A-MAFDGIIFQGQSLKIR 80
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 46.6 bits (110), Expect = 1e-07
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 179 DLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEF 238
D + L L+ ++D+L+ +F + E+ G S A++EF
Sbjct: 6 DPCTSKKVRAARTLLAKNLSFNITEDELKEVFE-----DALEIRLVSQDGKSKGIAYIEF 60
Query: 239 DNPKSCEDAYLKMDNVLIDDRRIH 262
+ E + ID R +
Sbjct: 61 KSEADAEKNLEEKQGAEIDGRSVS 84
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 46.2 bits (109), Expect = 2e-07
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
L+V L+ ++ + +FS+ G C++I + + Y FVEF +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAA 63
Query: 247 AYLKMDNVLIDDRRIH 262
A M+ I + +
Sbjct: 64 ALAAMNGRKILGKEVK 79
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 45.9 bits (108), Expect = 3e-07
Identities = 17/79 (21%), Positives = 35/79 (44%)
Query: 184 DAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKS 243
+ P VL++ L+P ++ DL +F+RF + + +TG AF+ F N +
Sbjct: 13 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEI 72
Query: 244 CEDAYLKMDNVLIDDRRIH 262
A ++ + + +
Sbjct: 73 AWQALHLVNGYKLYGKILV 91
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 46.4 bits (109), Expect = 4e-07
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 165 REAKARATILEIVGDLPEADAAPPENV---LFVCKLNPVTSDDDLEIIFSRFGKVNCCEV 221
+ A+ + + +P P +V L V + + L +F R+G + ++
Sbjct: 15 QTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKI 74
Query: 222 IRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIH 262
+ D+ T S Y FV+F + S + A ++ I ++R+
Sbjct: 75 VCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 45.5 bits (107), Expect = 4e-07
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV L T+D L F FG + VI D+ TG S Y FV + + E A K
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA-CKD 71
Query: 252 DNVLIDDRRIH 262
N +ID R+ +
Sbjct: 72 PNPIIDGRKAN 82
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 46.9 bits (110), Expect = 5e-07
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
+FV + T + L F ++GK+ E++ D+ +G +AFV FD+ S +
Sbjct: 95 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 154
Query: 247 AYLKMDNVLIDDRRIHAR 264
+ ++ R
Sbjct: 155 I-VIQKYHTVNGHNCEVR 171
Score = 43.1 bits (100), Expect = 1e-05
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 188 PENV--LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
PE + LF+ L+ T+D+ L F ++G + C V+RD T S + FV + + +
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 246 DAYLKMDNVLIDDRRIHARGEEWNMWKRREEEEEKEEI 283
A + + R +R ++I
Sbjct: 63 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI 100
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 44.4 bits (104), Expect = 7e-07
Identities = 8/76 (10%), Positives = 28/76 (36%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E L++ P + ++ + V + S ++A+++ + +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 249 LKMDNVLIDDRRIHAR 264
K++ + I+ + +
Sbjct: 61 EKLNGLKIEGYTLVTK 76
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 44.8 bits (105), Expect = 8e-07
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 190 NVLFVCKLNP-VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
+VL V LNP + L I+F +G V +++ +K + A V+ + + A
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK-----ENALVQMADGNQAQLAM 57
Query: 249 LKMDNVLIDDRRIH---ARGEEWNMWKRREEEE 278
++ + + I ++ + + + +E++
Sbjct: 58 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ 90
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.0 bits (103), Expect = 1e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
E LFV L+ T++ LE +FS++G+++ V++D+ T S + FV F+N +DA
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 249 LKMDNVLIDDRRIH 262
+ M+ +D R+I
Sbjct: 65 MAMNGKSVDGRQIR 78
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 43.4 bits (102), Expect = 2e-06
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 204 DDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHA 263
+DL + S+FG++ + G A V F +P+ + +D R+I A
Sbjct: 34 EDLRVECSKFGQIRKLLLFDRHPDG----VASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
Query: 264 R 264
+
Sbjct: 90 Q 90
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 43.5 bits (102), Expect = 2e-06
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
A P L+V L P TS L F RFG + + ++ +A++++++ + +
Sbjct: 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD------SFAYIQYESLDAAQ 67
Query: 246 DAYLKMDNVLID--DRRIH 262
A KM + DRR+
Sbjct: 68 AACAKMRGFPLGGPDRRLR 86
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 42.8 bits (100), Expect = 3e-06
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 185 AAPPENVLFVCK--LNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPK 242
+ L V L S + L + + G V+ + +K Y+F + +
Sbjct: 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK------PYSFARYRTTE 67
Query: 243 SCEDAYLKMDNVLIDDRR 260
+ AY+ ++ + D
Sbjct: 68 ESKRAYVTLNGKEVVDDL 85
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.3 bits (99), Expect = 4e-06
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV + ++D+L FS++G V + +AFV F + + +
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFVTFADDQIAQSL--CG 60
Query: 252 DNVLIDDRRIH 262
++++I +H
Sbjct: 61 EDLIIKGISVH 71
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 42.5 bits (99), Expect = 5e-06
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
Query: 182 EADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNP 241
E D + + + + D+ + G L A V+F N
Sbjct: 1 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNE 60
Query: 242 KSCEDAYLKMDNVLIDDRRIH 262
+ ++ ++ R
Sbjct: 61 DDARKS-ERLHRKKLNGREAF 80
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 42.7 bits (100), Expect = 5e-06
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 185 AAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSC 244
P + V L + D L IFS+FG V A +++ +P S
Sbjct: 3 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQF----QALLQYADPVSA 58
Query: 245 EDAYLKMDNVLIDDRRIHARGEEWNMWKRREEEEEKE 281
+ A L +D I + R + K +
Sbjct: 59 QHAKLSLDGQNIYNACCTLR---IDFSKLTSLNVKYN 92
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 41.6 bits (97), Expect = 5e-06
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 190 NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
N L++ L+P + DDL +F +V+ YAFV++ + A
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS------GYAFVDYPDQNWAIRAIE 55
Query: 250 KMD-NVLIDDRRIH 262
+ V + + +
Sbjct: 56 TLSGKVELHGKIME 69
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 41.5 bits (97), Expect = 6e-06
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 186 APPE-NVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSC 244
AP + N L+V + + L FS FG + + + AFV ++ +S
Sbjct: 1 APRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESA 52
Query: 245 EDAYLKMDNVLIDDRRIH 262
+ A +++ ++ ++
Sbjct: 53 DQAVAELNGTQVESVQLK 70
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 41.6 bits (97), Expect = 7e-06
Identities = 12/96 (12%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKV--NCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYL 249
LF+ + + +++ ++ + + + +AFVE+++ ++ A
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 250 KMDN--VLIDDRRIHARGEEWNMWKRREEEEEKEEI 283
K+ + + +I +W + +E+ E +
Sbjct: 64 KLMPGRIQLWGHQIAV---DWAEPEIDVDEDVMETV 96
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 40.5 bits (94), Expect = 1e-05
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L++ L P T+D DL + +GK+ + I DK T Y FV+FD+P + + A +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 252 DNVLIDDRRI 261
+ +
Sbjct: 61 KASGVQAQMA 70
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.7 bits (92), Expect = 3e-05
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
PP L + + P S++DL+++FS G V V K + A ++ + +
Sbjct: 8 PPSATLHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSVEEAVQ 63
Query: 247 AYLKMDNVLIDDRR 260
A + + N + +
Sbjct: 64 ALIDLHNHDLGENH 77
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 40.1 bits (93), Expect = 3e-05
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 183 ADAAPP----ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEF 238
+ PP + + V L P S DL+ G V +V +D VE+
Sbjct: 5 SSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD-------GMGMVEY 57
Query: 239 DNPKSCEDAYLKMDNVLIDDRRIHAR 264
+ E A K+D+
Sbjct: 58 LRKEDMEYALRKLDDTKFRSHEGETS 83
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 40.2 bits (93), Expect = 4e-05
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
V+ V L + DL +FG + ++ K + A VEF+N S ++
Sbjct: 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK------RQALVEFENIDSAKE 66
Query: 247 A--YLKMDNVLIDDRRIH 262
+ V I ++
Sbjct: 67 CVTFAADVPVYIAGQQAF 84
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.7 bits (92), Expect = 4e-05
Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+ V L ++ ++ + + C + + AFV N + ++A
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYDLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMF 60
Query: 252 DNVLIDDRRIH 262
+ +
Sbjct: 61 HQYSFRGKDLI 71
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.0 bits (90), Expect = 8e-05
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+FV + +++ L+ IFS G V ++ D+ TG Y F E+ + ++ A +
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 252 DNVLIDDRRIH 262
+ R +
Sbjct: 71 NGREFSGRALR 81
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 38.0 bits (87), Expect = 1e-04
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 180 LPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFD 239
+ E + LF+ LNP S +L++ S N V+ + TG + ++ +V+F+
Sbjct: 4 MVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFE 62
Query: 240 NPKSCEDAYLKMDNVLIDDRRIH 262
+ + E A L++ + + I
Sbjct: 63 SAEDLEKA-LELTGLKVFGNEIK 84
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 37.8 bits (87), Expect = 2e-04
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 188 PENVLFVCKLNP-VTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
V+ + L + FG ++ ++ AF+E + +
Sbjct: 7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQA 60
Query: 247 A--YLKMDNVLIDDRRIH 262
A Y L+ + +
Sbjct: 61 AVDYYTTTPALVFGKPVR 78
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 37.5 bits (86), Expect = 2e-04
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
+F+ L+ + ++ L + +FG + V+ T S AF +F ++ +
Sbjct: 5 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQ 64
Query: 246 DA------YLKMDNVLIDDRRIH 262
+ + +D R++
Sbjct: 65 KCLAAASLEAEGGGLKLDGRQLK 87
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.1 bits (83), Expect = 8e-04
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 204 DDLEIIFSRFGKVNCCEVIRDKVTGDSLQ--YAFVEFDNPKSCEDAYLKMDNVLIDDRRI 261
+D+ S++G V E+ R + FVEF + C+ A + +R +
Sbjct: 29 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 88
Query: 262 HA 263
Sbjct: 89 VT 90
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 35.2 bits (80), Expect = 0.001
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 187 PPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCED 246
PP +LF+ L T++ L ++F++F ++ ++ AFVEF
Sbjct: 6 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVEFTTELQSNA 60
Query: 247 AYLKMDNVLIDDRR 260
A + I
Sbjct: 61 AKEALQGFKITPTH 74
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 34.3 bits (78), Expect = 0.002
Identities = 8/74 (10%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 189 ENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAY 248
+++ + DD++ +R + FV FD+ +S +
Sbjct: 6 NRSVYIKGFPTDATLDDIKEWLEDK-GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF- 63
Query: 249 LKMDNVLIDDRRIH 262
++ + +
Sbjct: 64 VETPGQKYKETDLL 77
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 34.1 bits (78), Expect = 0.003
Identities = 7/69 (10%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 193 FVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKMD 252
V ++ L F+++G + + + + + + A L D
Sbjct: 8 TVFGFPQASASYILLQ-FAQYGNILKHVMSNTG------NWMHIRYQSKLQARKA-LSKD 59
Query: 253 NVLIDDRRI 261
+ + +
Sbjct: 60 GRIFGESIM 68
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 33.7 bits (76), Expect = 0.003
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
+ + L ++ ++ + S + C AFV N + E A
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCF-------VDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 252 DNVLIDDRRIH 262
+ +R +
Sbjct: 54 HQSRLRERELS 64
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.1 bits (77), Expect = 0.004
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 186 APPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCE 245
P VL + KL ++ ++ + FGKV +++ K AF+E ++
Sbjct: 5 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK------NQAFLELATEEAAI 58
Query: 246 DA--YLKMDNVLIDDRRIH 262
Y + ++ I+
Sbjct: 59 TMVNYYSAVTPHLRNQPIY 77
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 34.0 bits (77), Expect = 0.004
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 192 LFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLKM 251
L++ L + +LE + F I +G S F ++ + CE
Sbjct: 21 LYISNLPLSMDEQELENMLKPF-GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 252 DNVLIDDRRIHAR 264
+ I +
Sbjct: 80 NGKFIKTPPGVSA 92
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 32.9 bits (74), Expect = 0.012
Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 191 VLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVTGDSLQYAFVEFDNPKSCEDAYLK 250
+ F L+ T +DL I+FS G++ + +R + + F ++A K
Sbjct: 13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEK--AKEALGK 64
Query: 251 MDNVLIDDRRIHARGEEWNMWKRREEEEEKEEIDEKKEEEEKEDR 295
+ + ++ + W + + E+E ++I E ++E + +
Sbjct: 65 AKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWK 109
>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli
[TaxId: 562]}
Length = 87
Score = 30.7 bits (69), Expect = 0.041
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 230 SLQYAFVEFDNPKSCEDAYLKMDNVLIDDRRIHARGEEWNMWKRREEEEEKEEIDEKKEE 289
SL+ AFV++ + +L + + ++ R ++ E E +
Sbjct: 14 SLEAAFVDYGAERHG---FLPLKEI-----AREYFPANYSAHGRPNIKDVLREGQEVIVQ 65
Query: 290 EEKEDRAMIGDRM 302
+KE+R G +
Sbjct: 66 IDKEERGNKGAAL 78
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.9 bits (64), Expect = 0.46
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 88 AVKCVQSNIIVFKRKNDIRITHAVILEDPYEDLPELV 124
A++ V+S+ + K +IRI + DPYE+ +
Sbjct: 130 AMENVESDPKTDRPKEEIRIDATTVFVDPYEEADAQI 166
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 27.9 bits (62), Expect = 1.1
Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 8/96 (8%)
Query: 168 KARATILEIVGDLPEADAAPPENVLFVCKLNPVTSDDDLEIIFSRFGKVNCCEVIRDKVT 227
A ++ D + P + ++ D + + T
Sbjct: 20 YVYAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPD----VQTVIPINIETMAFVVPTT 75
Query: 228 GDSLQYAFVEFDNPKSCEDAYLKMDN----VLIDDR 259
+ VE P + +D +N +L +
Sbjct: 76 LMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKE 111
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 266
Score = 27.4 bits (60), Expect = 1.8
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 137 ANGLIGADEDIDETAGLSAQEIEELRAEREAKARATILEIVGDLPEADAAPP 188
+ + D D+ ++A+E+ ++ AE AK + + E++ LPE
Sbjct: 202 SVIGMVTDYDVFADIPVTAEEVTKVMAENTAKVKKLLYEVIRRLPEKPDERK 253
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 27.1 bits (59), Expect = 2.1
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 88 AVKCVQSNIIVFKRKNDIRITHAVILEDPY 117
++ + N ++ ND+ I I +P+
Sbjct: 130 ELEKLPVNEKTYRPLNDVHIKDITIHANPF 159
>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP {Geotrichum
candidum [TaxId: 27317]}
Length = 439
Score = 27.4 bits (60), Expect = 2.2
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 259 RRIHARGEEWNMWKRREEEEEKEEIDEKKEEEEKEDRAMIGDRMEDG 305
R + E+N + + ++E + A + R + G
Sbjct: 218 RHFQQKVPEFNAYTLANAIPANSAGNLTQQEGAEFLGARMFGRWKSG 264
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine
CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Length = 402
Score = 27.4 bits (59), Expect = 2.7
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 112 ILEDPYEDLPELVYPPSP-----EPTRELLANGLIGAD-EDIDETAGLSAQEIEELRAE 164
I + D P P + G D I + G S +I+EL ++
Sbjct: 337 ITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSK 395
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 25.5 bits (56), Expect = 2.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 245 EDAYLKMDNVLIDDRRIHARGEEWNMWKRREEEEEKEEIDEKKEEEEK 292
ED L+ D ++I + E W + + EKEE + +++E EK
Sbjct: 18 EDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEK 65
>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 50
Score = 24.6 bits (53), Expect = 3.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 165 REAKARATILEIVGDLPEADA 185
+EA+ARA +L+++ P+A A
Sbjct: 18 KEAQARAVVLDLLAQNPKARA 38
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
formigenes [TaxId: 847]}
Length = 427
Score = 25.7 bits (55), Expect = 8.4
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 140 LIGAD-EDIDETAGLSAQEIEELRAE 164
L+G +++ + GL +I+EL A+
Sbjct: 399 LLGEHTDEVLKELGLDDAKIKELHAK 424
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
[TaxId: 562]}
Length = 417
Score = 25.3 bits (54), Expect = 10.0
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 140 LIGAD-EDIDETAGLSAQEIEELRAE 164
L+G + + G S EI ++
Sbjct: 388 LLGEHTAAVLQELGYSDDEIAAMKQN 413
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.400
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,293,197
Number of extensions: 67686
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 121
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.9 bits)