BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15677
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 34 AETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
A+ ++ H+KPGL+SM + G GSQFFIT P +H VFGE+ EG DI+ K+
Sbjct: 83 ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 141
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 34 AETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
A+ ++ H+KPGL+SM + G GSQFFIT P +H VFGE+ EG DI+ K+
Sbjct: 84 ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 142
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
++ H+K G++SM +CG GSQFFITLG +H VFGE+ EG D++ K+
Sbjct: 113 ELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI 166
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 3 FIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQF 62
F+ QTGDP +G + D E + H +P +SM + G GSQF
Sbjct: 70 FMIQTGDPTGTGMGGESIWGGEFED-------EFHSTLRHDRPYTLSMANAGSNTNGSQF 122
Query: 63 FITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FIT+ P N+H VFG + +G +++ +++N
Sbjct: 123 FITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV 155
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 3 FIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQF 62
F+ QTGDP +G +E E + HSKP +VSM +CG GSQF
Sbjct: 54 FMVQTGDPSGDGTGGESIWG-------NEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQF 106
Query: 63 FITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
FIT P +H VFG++ +G I+L +
Sbjct: 107 FITTVPCPWLDFKHTVFGKVTQGSKIVLDI 136
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 42 HSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
H +PGL+SM + G GSQFFIT P +H VFGE+ +G+DI+ K+ +
Sbjct: 90 HDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVES 142
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 2 NFIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ Q GDP +G + +E E P + + G+++M + G GSQ
Sbjct: 59 DFMIQGGDPTGTGRGGASIYG-------KQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
FF+TL P +H +FG + +G ++ ++
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 3 FIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEG----LL 58
FI Q GDP +G RY++ E P++ + + G++SM G
Sbjct: 65 FIIQGGDPTGTGKGGESIYG-------RYFDDEIYPELKYDRRGILSMASKGASKKPNTN 117
Query: 59 GSQFFITLGPDLKSLN-EHCVFGEIAEGFDILLKLNN 94
GSQFFIT L LN E+ +FG++ +GF+ L L N
Sbjct: 118 GSQFFITYS-SLPQLNGEYVIFGKLIDGFETLNTLEN 153
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 2 NFIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ Q GDP +G + +E E P + + G+++M + G GSQ
Sbjct: 59 DFMIQGGDPTGTGRGGASIYG-------KQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
FF+TL P +H +FG + +G ++ ++
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H+ PGL+SM + G GSQFF+T +H VFGE+ EG D+L ++
Sbjct: 98 LKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 150
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H+ PGL+SM + G GSQFF+T +H VFGE+ EG D+L ++
Sbjct: 90 LKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 142
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 3 FIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQF 62
F+ QTGDP +G + +E E + H+ G+VSM + G GSQF
Sbjct: 55 FMVQTGDPTGTGRGGNSIWG-------KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQF 107
Query: 63 FITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
FIT G ++ VFG++ +G + L +L
Sbjct: 108 FITYGKQPHLDMKYTVFGKVIDGLETLDEL 137
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 2 NFIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ Q GDP +G + +E E P + + G+++M + G GSQ
Sbjct: 59 DFMIQGGDPTGTGRGGASIYG-------KQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
FF+TL P +H +FG + +G ++ ++
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 3 FIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQF 62
F+ QTGDP +G + +E E + H+ G+VSM + G GSQF
Sbjct: 49 FMVQTGDPTGTGRGGNSIWG-------KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQF 101
Query: 63 FITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
FIT G ++ VFG++ +G + L +L
Sbjct: 102 FITYGKQPHLDMKYTVFGKVIDGLETLDEL 131
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
K+ H PG VSM + G+ GSQFFIT +H VFG++ EG +++ K+
Sbjct: 98 KLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETT 154
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
K+ H PG VSM + G+ GSQFFIT +H VFG++ EG +++ K+ +
Sbjct: 91 KLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVEST 147
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
K+ H PG VSM + G+ GSQFFIT +H VFG++ EG +++ K+
Sbjct: 98 KLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETT 154
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
K+ H PG VSM + G+ GSQFFIT +H VFG++ EG +++ K+ +
Sbjct: 101 KLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVEST 157
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 34 AETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
A+ ++ H+KPGL+SM + G GSQFFIT +H VFGE+ +G +++
Sbjct: 82 ADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVV 137
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 32 YEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLK 91
++ E +P + H+ G++SM + G SQFFIT +H +FG + GFD+L
Sbjct: 90 FKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTA 149
Query: 92 LNNA 95
+ N
Sbjct: 150 MENV 153
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 46 GLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
G VSM + G GSQFF+T P H VFG++ EG D++ K+ N
Sbjct: 97 GAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENT 146
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 2 NFIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
NF+ Q GDP +G Y+E E ++ H+ G++SM + G SQ
Sbjct: 86 NFVIQGGDPTGTGKGGKSIYG-------EYFEDEINKELKHTGAGILSMSNNGPNTNSSQ 138
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGF 86
FFITL P +H +F +++
Sbjct: 139 FFITLAPLPHLDGKHTIFARVSKNM 163
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H +PGL+SM + G SQFFITL P +H VFG++ EG +++ ++
Sbjct: 96 MKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREM 148
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 34 AETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLN 93
A+ K+ HS PGL+SM + G G QFFIT +H VFG+I +G ++ K+
Sbjct: 96 ADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIE 155
Query: 94 NA 95
N
Sbjct: 156 NV 157
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H+ PGL+S + G GSQFF+T +H VFGE+ EG D+L ++
Sbjct: 99 LKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 151
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 3 FIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQF 62
FI Q GDP +G + D E ++ ++ GLV+M + G GSQF
Sbjct: 73 FIVQGGDPTGTGSGGESIYGAPFKD-------EFHSRLRFNRRGLVAMANAGSHDNGSQF 125
Query: 63 FITLGPDLKSLNEHCVFGEIA 83
F TLG + N+H +FG++
Sbjct: 126 FFTLGRADELNNKHTIFGKVT 146
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 1 ANFIAQTGDPXXXXXXXXXXFGLAYGDHARYYE--AETQPKIPHSKPGLVSMVHCGEGLL 58
A+F+ Q GD G G + Y E A+ K+ H G +SM + G
Sbjct: 61 ADFMIQGGD---------FTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTN 111
Query: 59 GSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
GSQFFIT H VFG+I EG D++ K+
Sbjct: 112 GSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQT 148
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 42 HSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
H K GL+SM + G GSQFFIT P +H VFG++ +G + L N
Sbjct: 112 HDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILEN 164
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 32 YEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAE 84
+ E P++ KP L++M + G G GSQFFIT+G H +FGE+ +
Sbjct: 106 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVID 158
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H +PGL+SM + G SQF ITL P +H VFG++ EG +++ ++
Sbjct: 96 MKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMNVVREM 148
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 46 GLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
G +SM + G GSQFFIT P H VFG++ +G D++L++
Sbjct: 103 GALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRI 149
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H +P +VSM + G GSQFFIT P N H VFG++ G +++ K+
Sbjct: 101 MKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKI 153
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 46 GLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
G +SM + G GSQFFIT P H VFG++ +G D++L++
Sbjct: 103 GALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRI 149
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 109 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 158
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 90 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 139
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 90 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 139
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 90 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 139
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 90 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 139
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 89 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 138
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 89 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 138
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 90 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 139
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 90 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 139
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG++ EG +I+
Sbjct: 98 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 147
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
+ H+K L+SM + G+ GSQFFIT P H VFG++ G +++ ++ N
Sbjct: 104 VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIEN 158
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI +H VFG + EG +I+
Sbjct: 89 LKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIV 138
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFI-TLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H PG++SM + G GSQFFI T+ D +H VFG + EG D++ K+
Sbjct: 89 LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLD-GKHVVFGHVIEGMDVVKKI 141
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFI-TLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H PG++SM + G GSQFFI T+ D +H VFG + EG D++ K+
Sbjct: 90 LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLD-GKHVVFGHVIEGMDVVKKI 142
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFI-TLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H PG++SM + G GSQFFI T+ D +H VFG + EG D++ K+
Sbjct: 90 LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLD-GKHVVFGHVIEGMDVVKKI 142
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFI-TLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H PG++SM + G GSQFFI T+ D +H VFG + EG D++ K+
Sbjct: 91 LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLD-GKHVVFGHVIEGMDVVKKI 143
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI H VFG++ EG +I+
Sbjct: 90 LKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIV 139
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
+ H+K L+SM + G+ GSQFFIT P H VFG++ G +++ ++ N
Sbjct: 104 VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIEN 158
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI H VFG++ EG +I+
Sbjct: 94 LKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIV 143
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++SM + G GSQFFI H VFG++ EG +I+
Sbjct: 90 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIV 139
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG+++M + G GSQFFI +H VFG++ EG +I+
Sbjct: 90 LKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 139
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 42 HSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
H P L+SM + G GSQFFIT P +H VFG++ EG +++ +
Sbjct: 115 HDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSI 165
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 42 HSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAE 84
H K G++SM + G GSQFFIT +H VFGE+A+
Sbjct: 96 HDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVAD 138
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
K H+ PG++SM + G GSQFF+ +H VFG + EG D++
Sbjct: 96 KEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVV 146
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
K+ H G VSM + G GSQFFITL +H VFG++ +G ++
Sbjct: 101 KLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVV 151
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
K+ H G VSM + G GSQFFITL +H VFG++ +G ++
Sbjct: 93 KLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVV 143
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
+ H+ PGL+SM + G+ SQF ITL +H VFG + +G D + K+
Sbjct: 93 VKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKI 145
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
+ H + L+SM + G+ GSQFFIT P H VFG + GF+++ ++ N
Sbjct: 114 LKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIEN 168
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
+ H+ L+SM + G+ GSQFFIT P H VFG++ G +++ ++ N
Sbjct: 121 VKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIEN 175
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+ H+ PG++S + G GSQFFI +H VFG++ EG +I+
Sbjct: 89 LKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIV 138
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 42 HSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKL 92
H+ G +SM + G GSQFFI +H VFG + +G D++ K+
Sbjct: 106 HTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVIDGLDVVKKV 156
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 32 YEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDIL 89
+E E ++ H G++SM + G+ S+FFIT N+H +FG + G D+L
Sbjct: 89 FEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVL 146
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILL 90
I H K GL+SM + G G QFFIT ++ VFG I + +LL
Sbjct: 151 IKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLL 201
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 28 HARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFD 87
+ R ++ E ++ H G++SM + G GSQFFI +H VFG + +G +
Sbjct: 86 YGRKFDDEN-FQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQN 144
Query: 88 ILLKLNNA 95
++ K+ +
Sbjct: 145 VVKKMESV 152
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 41 PHSKPGLVSMV----HCGEGLLGSQFFITLGPDLKSLN-------EHCVFGEIAEGFDIL 89
PH GL+S+V G S F ITL D++ N + V G++ G D+L
Sbjct: 122 PHESKGLLSLVPYTDESGNRYYDSTFMITLD-DIRPSNVLDELDRDQVVIGQVYGGLDVL 180
Query: 90 LKLNNAI 96
K+N+ I
Sbjct: 181 DKINSMI 187
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 2 NFIAQTGDPXXXXXXXXXXFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGE------ 55
+FI Q GDP G + ++ ET P++ GLV + + G
Sbjct: 69 DFIVQGGDPTGTGRG-----GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAE 123
Query: 56 --------GLLGSQFFITLGPDLKSLNEHCVFGEIA 83
G G+QFFITL N + +FG++
Sbjct: 124 NDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT 159
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 28 HARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFG 80
+A+Y+E E + +K G MV + G I LGP + L C+ G
Sbjct: 505 NAKYHEKEAEIV---AKAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIG 554
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 28 HARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFG 80
+A+Y+E E + +K G MV + G I LGP + L C+ G
Sbjct: 505 NAKYHEKEAEIV---AKAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIG 554
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 40 IPHSKPGLVSMVHCGEGLLGSQFFITLGPDL 70
+PH++ G + + E L Q++I L PD+
Sbjct: 91 VPHARVGHIGLYRDPESLNPVQYYIKLPPDI 121
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 37 QPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
+P + KP H G+ + + + TL ++NEH V IAE D L+K +N
Sbjct: 260 EPAVHRMKP------HQGQLEVATTIWETLADSSLAVNEHEVEKLIAEEMDGLVKASN 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,822,753
Number of Sequences: 62578
Number of extensions: 98774
Number of successful extensions: 213
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 73
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)