Query psy15677
Match_columns 96
No_of_seqs 173 out of 1089
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:43:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0880|consensus 100.0 1.5E-38 3.3E-43 217.4 8.2 86 1-95 95-182 (217)
2 KOG0546|consensus 100.0 1.5E-38 3.2E-43 232.9 7.0 86 1-95 71-158 (372)
3 KOG0881|consensus 100.0 9.6E-38 2.1E-42 201.7 3.8 86 1-94 56-142 (164)
4 KOG0882|consensus 100.0 2.7E-35 6E-40 220.7 8.3 87 1-95 451-538 (558)
5 KOG0883|consensus 100.0 3.1E-35 6.7E-40 217.5 8.2 86 2-95 325-411 (518)
6 KOG0884|consensus 100.0 4.1E-35 8.8E-40 188.7 5.9 87 1-95 47-134 (161)
7 COG0652 PpiB Peptidyl-prolyl c 100.0 7.6E-34 1.7E-38 190.2 9.1 83 1-95 46-133 (158)
8 KOG0879|consensus 100.0 2.1E-34 4.7E-39 188.0 5.8 86 1-95 70-157 (177)
9 cd01927 cyclophilin_WD40 cyclo 100.0 7E-33 1.5E-37 183.9 10.7 87 1-95 44-131 (148)
10 cd01922 cyclophilin_SpCYP2_lik 100.0 1.3E-32 2.9E-37 182.3 10.6 87 1-95 44-131 (146)
11 cd01921 cyclophilin_RRM cyclop 100.0 2.3E-32 4.9E-37 184.4 11.3 95 1-95 44-139 (166)
12 KOG0111|consensus 100.0 2.7E-33 5.9E-38 195.3 6.8 85 1-94 191-277 (298)
13 cd01928 Cyclophilin_PPIL3_like 100.0 3E-32 6.5E-37 181.8 10.6 87 1-95 47-134 (153)
14 cd01923 cyclophilin_RING cyclo 100.0 6.5E-32 1.4E-36 181.1 10.7 87 1-95 46-133 (159)
15 KOG0415|consensus 100.0 3.9E-31 8.5E-36 194.1 7.6 96 1-96 47-143 (479)
16 cd01926 cyclophilin_ABH_like c 100.0 2.3E-30 5.1E-35 174.2 10.4 86 1-95 60-147 (164)
17 PLN03149 peptidyl-prolyl isome 100.0 3.8E-30 8.2E-35 176.5 10.3 86 1-95 78-166 (186)
18 PTZ00060 cyclophilin; Provisio 100.0 9.5E-30 2.1E-34 174.1 10.3 86 1-95 76-163 (183)
19 PTZ00221 cyclophilin; Provisio 100.0 3.1E-29 6.8E-34 178.2 10.0 82 2-95 117-199 (249)
20 cd01925 cyclophilin_CeCYP16-li 100.0 1E-28 2.3E-33 167.3 10.1 87 1-95 52-140 (171)
21 KOG0865|consensus 100.0 1.9E-29 4.1E-34 170.2 5.2 85 1-94 61-147 (167)
22 cd01924 cyclophilin_TLP40_like 100.0 9.6E-28 2.1E-32 163.4 9.9 91 1-94 44-164 (176)
23 cd01920 cyclophilin_EcCYP_like 99.9 7E-27 1.5E-31 156.2 9.4 84 1-95 44-134 (155)
24 PRK10791 peptidyl-prolyl cis-t 99.9 1.3E-26 2.9E-31 156.2 9.5 83 1-95 46-139 (164)
25 PRK10903 peptidyl-prolyl cis-t 99.9 2E-26 4.3E-31 158.6 9.8 84 1-95 75-165 (190)
26 cd00317 cyclophilin cyclophili 99.9 8.9E-26 1.9E-30 148.4 10.7 86 1-95 44-130 (146)
27 KOG0885|consensus 99.9 1.8E-26 3.9E-31 170.0 5.7 76 1-84 59-135 (439)
28 PF00160 Pro_isomerase: Cyclop 99.9 4.7E-23 1E-27 136.5 9.0 86 1-95 47-138 (155)
29 TIGR03268 methan_mark_3 putati 94.6 0.062 1.3E-06 42.1 4.5 53 32-90 247-299 (503)
30 PRK00969 hypothetical protein; 94.3 0.088 1.9E-06 41.3 4.6 53 32-90 250-302 (508)
31 COG4070 Predicted peptidyl-pro 88.3 0.4 8.7E-06 37.0 2.3 53 32-90 249-301 (512)
32 KOG0882|consensus 82.7 4.3 9.3E-05 32.1 5.6 58 36-95 184-242 (558)
33 TIGR03268 methan_mark_3 putati 80.7 3.7 8.1E-05 32.5 4.7 52 43-94 110-164 (503)
34 PRK00969 hypothetical protein; 80.4 3.4 7.4E-05 32.7 4.4 52 43-94 114-167 (508)
35 PF05913 DUF871: Bacterial pro 54.4 9.8 0.00021 28.8 2.0 49 43-93 298-348 (357)
36 PF12903 DUF3830: Protein of u 38.9 43 0.00094 22.4 3.0 19 76-94 112-130 (147)
37 PF04126 Cyclophil_like: Cyclo 30.8 43 0.00093 21.2 1.9 45 44-94 61-113 (120)
38 PRK11148 cyclic 3',5'-adenosin 24.8 59 0.0013 23.0 2.0 15 1-15 56-70 (275)
39 COG1409 Icc Predicted phosphoh 24.5 60 0.0013 22.4 1.9 14 1-14 34-47 (301)
40 PF00149 Metallophos: Calcineu 24.5 73 0.0016 18.9 2.2 13 1-13 32-44 (200)
41 PF12396 DUF3659: Protein of u 21.9 72 0.0016 18.2 1.6 14 72-85 15-29 (64)
42 KOG2239|consensus 20.6 97 0.0021 21.9 2.3 22 61-82 95-119 (209)
43 cd07400 MPP_YydB Bacillus subt 20.2 88 0.0019 19.4 1.9 14 1-14 36-49 (144)
No 1
>KOG0880|consensus
Probab=100.00 E-value=1.5e-38 Score=217.41 Aligned_cols=86 Identities=44% Similarity=0.759 Sum_probs=82.0
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|||||||||++ ++|+|+.|+|| ..|+|||+ .|+|++||.|||||.|||+||||||||+.. .+||| +|+|
T Consensus 95 ~nfmIQGGd~t~g~gtGg~SIyG-------~~F~DENf-~LkH~rpG~lSMAn~GpDtNGsQFfItT~~-t~wLDGkhVV 165 (217)
T KOG0880|consen 95 PNFMIQGGDFTKGDGTGGKSIYG-------EKFPDENF-KLKHDRPGRLSMANAGPDTNGSQFFITTVK-TPWLDGKHVV 165 (217)
T ss_pred cCceeecCccccCCCCCCeEeec-------CCCCCccc-eeecCCCceEeeeccCCCCCCceEEEEecC-CccccCceeE
Confidence 79999999999 88999999999 67999996 999999999999999999999999999986 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||+|++|||+|.+|+.+
T Consensus 166 FGqVl~Gmdvv~~Ie~~ 182 (217)
T KOG0880|consen 166 FGQVLEGMDVVRKIENV 182 (217)
T ss_pred EeeehhhHHHHHHHHhc
Confidence 99999999999999864
No 2
>KOG0546|consensus
Probab=100.00 E-value=1.5e-38 Score=232.93 Aligned_cols=86 Identities=40% Similarity=0.726 Sum_probs=82.5
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
++|||||||++ |+|+||.|||| .+|+||++ .|+|+++++|||||.||||||||||||+.+ +|||| +|+|
T Consensus 71 K~FMiQgGDfs~gnGtGGeSIYG-------~~FdDEnF-~lKHdrpflLSMAN~GpNTNgSQFFITT~p-~PHLdGkHVV 141 (372)
T KOG0546|consen 71 KNFMIQGGDFSEGNGTGGESIYG-------EKFDDENF-ELKHDRPFLLSMANRGPNTNGSQFFITTVP-TPHLDGKHVV 141 (372)
T ss_pred ecceeeccccccCCCCCcccccc-------cccccccc-eeccCcchhhhhhcCCCCCCCcceEEeCCC-CCCcCCceeE
Confidence 58999999999 99999999999 68999986 999999999999999999999999999997 99999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||+||.|++||+.|+.+
T Consensus 142 FGqVI~G~~VVr~IEn~ 158 (372)
T KOG0546|consen 142 FGQVIKGKEVVREIENL 158 (372)
T ss_pred EeeEeechhHHHHHhcc
Confidence 99999999999999974
No 3
>KOG0881|consensus
Probab=100.00 E-value=9.6e-38 Score=201.71 Aligned_cols=86 Identities=38% Similarity=0.824 Sum_probs=82.2
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
++||||||||+|+|.||.|||| ..|+||..+.|+|..+|+|||||.+||+|+|||||||.+ .+||| +||+|
T Consensus 56 ~DFmiQGGDPTGTGRGGaSIYG-------~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAP-t~~LDGKHTIF 127 (164)
T KOG0881|consen 56 KDFMIQGGDPTGTGRGGASIYG-------DKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAP-TQWLDGKHTIF 127 (164)
T ss_pred hhheeecCCCCCCCCCcccccc-------chhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecC-ccccCCcceee
Confidence 6899999999999999999999 569999999999999999999999999999999999997 89999 99999
Q ss_pred EEEEcCHHHHHHHHh
Q psy15677 80 GEIAEGFDILLKLNN 94 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~ 94 (96)
|||..||+|+++|-.
T Consensus 128 GRV~~Gm~vikr~G~ 142 (164)
T KOG0881|consen 128 GRVCSGMEVIKRMGM 142 (164)
T ss_pred hhhhhhHHHHHhhcc
Confidence 999999999998854
No 4
>KOG0882|consensus
Probab=100.00 E-value=2.7e-35 Score=220.69 Aligned_cols=87 Identities=43% Similarity=0.788 Sum_probs=84.0
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
++||||+|||.|+|+||.|||| +-|+||+++.|+|++|-+|||||+|||+||||||||..+ .|||| +||||
T Consensus 451 k~fmiqtgdp~g~gtggesiwg-------~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~-tpwld~khtvf 522 (558)
T KOG0882|consen 451 KGFMIQTGDPLGDGTGGESIWG-------KDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVP-TPWLDGKHTVF 522 (558)
T ss_pred hhheeecCCCCCCCCCCccccc-------ccchhhcCcccccCCCceEEecccCCCCCCceEEEEecC-ccccCCcceeE
Confidence 5899999999999999999999 569999999999999999999999999999999999997 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||..|||||++|+++
T Consensus 523 grv~~gm~vvqri~~v 538 (558)
T KOG0882|consen 523 GRVTAGMDVVQRIEQV 538 (558)
T ss_pred EEEecchhHHhHhhhc
Confidence 9999999999999985
No 5
>KOG0883|consensus
Probab=100.00 E-value=3.1e-35 Score=217.53 Aligned_cols=86 Identities=41% Similarity=0.772 Sum_probs=83.4
Q ss_pred CeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEEE
Q psy15677 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVFG 80 (96)
Q Consensus 2 ~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vFG 80 (96)
+||||||||+|+|.||.|||| ++|.||+.+.|+|+.||+|||||+|||+|||||||++++ +.+|| +|||||
T Consensus 325 nFmiQGGDPTGTG~GGeSiWg-------KpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrs-ckhLd~KHTIFG 396 (518)
T KOG0883|consen 325 NFMIQGGDPTGTGRGGESIWG-------KPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRS-CKHLDNKHTIFG 396 (518)
T ss_pred HHeeeCCCCCCCCCCCccccC-------CccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecc-hhhccccceeee
Confidence 799999999999999999999 689999999999999999999999999999999999996 89999 999999
Q ss_pred EEEcCHHHHHHHHhh
Q psy15677 81 EIAEGFDILLKLNNA 95 (96)
Q Consensus 81 ~Vi~G~dvl~~I~~~ 95 (96)
||+.|+|+|.+|+++
T Consensus 397 rvVGGldtL~amEnv 411 (518)
T KOG0883|consen 397 RVVGGLDTLTAMENV 411 (518)
T ss_pred eeeccHHHHHHHhcC
Confidence 999999999999976
No 6
>KOG0884|consensus
Probab=100.00 E-value=4.1e-35 Score=188.65 Aligned_cols=87 Identities=40% Similarity=0.711 Sum_probs=83.4
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
||||+|+|||+..|.||.|||| ..|+||....|+|+.||+|||||++|++|+||||||.+. .|+|| +|+||
T Consensus 47 ~~f~v~~~~~~~tgrgg~siwg-------~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~k-q~hldmkytvf 118 (161)
T KOG0884|consen 47 KGFMVQTGDPTHTGRGGNSIWG-------KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK-QPHLDMKYTVF 118 (161)
T ss_pred CCcEEEeCCCCCCCCCCccccC-------CcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecC-CCccceeEeee
Confidence 7999999999999999999999 679999998999999999999999999999999999995 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|+||+|+|.|++|+++
T Consensus 119 gkvidg~etldele~l 134 (161)
T KOG0884|consen 119 GKVIDGLETLDELEKL 134 (161)
T ss_pred eeeccchhhHHHHhhc
Confidence 9999999999999874
No 7
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-34 Score=190.18 Aligned_cols=83 Identities=39% Similarity=0.641 Sum_probs=73.8
Q ss_pred CCeEEEeCCCCCC-CCCCCccccCccCCCCCcCCCCcCCCCCCCC--CceEEEeecC-CCCccceEEEEeCCCCCCCC-C
Q psy15677 1 ANFIAQTGDPTGV-GTGGSSVFGLAYGDHARYYEAETQPKIPHSK--PGLVSMVHCG-EGLLGSQFFITLGPDLKSLN-E 75 (96)
Q Consensus 1 ~~f~iQgGD~~~~-g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~--~G~lsma~~~-~~~~~sqFfI~~~~~~~~ld-~ 75 (96)
|+||||||||+++ |.++.+ +.|++|+. ...|.+ +|+|||||++ |++|+|||||++.+ .|||| +
T Consensus 46 ~~FmiQgGd~~~~~g~gg~~----------~~f~~E~~-~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~-~~~Ld~~ 113 (158)
T COG0652 46 PGFMIQGGDPTGGDGTGGPG----------PPFKDENF-ALNGDRHKRGTLSMARAGDPNSNGSQFFITVVD-NPFLDGK 113 (158)
T ss_pred cCceeecCCCCCCCCCCCCC----------CCCccccc-ccccccCCcceEeEcccCCcCCccCeEEEEecC-CcccCCC
Confidence 7999999999966 888877 45899975 444555 8999999999 99999999999996 89999 9
Q ss_pred ceEEEEEEcCHHHHHHHHhh
Q psy15677 76 HCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 76 ~~vFG~Vi~G~dvl~~I~~~ 95 (96)
|+|||+|++|||||++|++.
T Consensus 114 ytVFG~Vv~GmdvvdkI~~~ 133 (158)
T COG0652 114 YTVFGQVVEGMDVVDKIKNG 133 (158)
T ss_pred CcEEEEEehhHHHHHHHHcC
Confidence 99999999999999999873
No 8
>KOG0879|consensus
Probab=100.00 E-value=2.1e-34 Score=188.03 Aligned_cols=86 Identities=38% Similarity=0.685 Sum_probs=81.4
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
++|||||||+. ++|+|-.|||+ ..|+||++ .|+|+.||+|||||+++++||+|||||..+ +.||| +|+|
T Consensus 70 kdFMiQgGDFv~gDGtG~~sIy~-------~~F~DENF-tlkH~~PGlLSMANsG~~tNGCQFFITcak-cdfLD~KHVV 140 (177)
T KOG0879|consen 70 KDFMIQGGDFVNGDGTGVASIYG-------STFPDENF-TLKHDGPGLLSMANSGKDTNGCQFFITCAK-CDFLDGKHVV 140 (177)
T ss_pred hhheeccCceecCCCceEEEEcC-------CCCCCcce-eeecCCCceeeccccCCCCCCceEEEEecc-cccccCceEE
Confidence 58999999987 99999999999 57999986 999999999999999999999999999985 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|+.++++||.+
T Consensus 141 FGrvldGlli~rkIEnv 157 (177)
T KOG0879|consen 141 FGRVLDGLLIMRKIENV 157 (177)
T ss_pred EeeeehhhhhhhhhhcC
Confidence 99999999999999975
No 9
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=7e-33 Score=183.95 Aligned_cols=87 Identities=43% Similarity=0.783 Sum_probs=81.3
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+||||+||+.++|.++.++|+ ..|++|..+.++|.++|+||||++++++++|||||++.+ .|+|| +|+||
T Consensus 44 ~~f~iq~Gd~~~~g~g~~~~~~-------~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~-~p~Ldg~~tvF 115 (148)
T cd01927 44 KGFMIQTGDPTGDGTGGESIWG-------KEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVA-TPWLDNKHTVF 115 (148)
T ss_pred CCcEEEecccCCCCCCCCcccC-------CccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCC-CcccCCCceEE
Confidence 7899999999999999999998 568899877899999999999999999999999999986 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 116 G~V~~G~dvl~~I~~~ 131 (148)
T cd01927 116 GRVVKGMDVVQRIENV 131 (148)
T ss_pred EEEEcCHHHHHHHHcC
Confidence 9999999999999875
No 10
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.3e-32 Score=182.33 Aligned_cols=87 Identities=39% Similarity=0.838 Sum_probs=80.8
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|||||||++++|.++.++|+ ..|++|..+.++|.++|+||||+++|++++|||||++.+ .|+|| +|+||
T Consensus 44 ~~f~iq~Gd~~~~g~~~~~~~~-------~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~-~p~Ld~~~tvF 115 (146)
T cd01922 44 KDFMIQGGDPTGTGRGGASIYG-------KKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAP-TPWLDGKHTIF 115 (146)
T ss_pred CCcEEEecccCCCCCCcccccC-------CCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCC-CcccCCCCCEE
Confidence 6899999999998999999998 568888767899999999999999999999999999996 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 116 G~V~~G~dvl~~I~~~ 131 (146)
T cd01922 116 GRVSKGMKVIENMVEV 131 (146)
T ss_pred EEEEcCHHHHHHHHhC
Confidence 9999999999999975
No 11
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.3e-32 Score=184.38 Aligned_cols=95 Identities=56% Similarity=0.998 Sum_probs=84.4
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|||||||+.++++++.++|+.......+.+++|..+.++|+++|+||||++++++++|||||++.+..|+|| +|+||
T Consensus 44 ~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvF 123 (166)
T cd01921 44 KDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVF 123 (166)
T ss_pred CCceEEECCcCCCCCCCcccccccccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEE
Confidence 68999999999999999888875544444568888877899999999999999999999999999975579999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 124 G~Vi~G~dvv~~I~~~ 139 (166)
T cd01921 124 GQVVEGFDVLEKINDA 139 (166)
T ss_pred EEEEcCHHHHHHHHcC
Confidence 9999999999999875
No 12
>KOG0111|consensus
Probab=100.00 E-value=2.7e-33 Score=195.30 Aligned_cols=85 Identities=38% Similarity=0.736 Sum_probs=80.9
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|.|||||||++ ++|+||.|||| ..|.||++ .|+|+.+|+|||||+++|+|||||||++.. ..||| +|+|
T Consensus 191 p~fmcqggdftn~ngtggksiyg-------kkfddenf-~lkht~pgtlsmansgantngsqffict~k-tdwldgkhvv 261 (298)
T KOG0111|consen 191 PKFMCQGGDFTNGNGTGGKSIYG-------KKFDDENF-TLKHTMPGTLSMANSGANTNGSQFFICTEK-TDWLDGKHVV 261 (298)
T ss_pred hhhhccCCccccCCCCCCccccc-------ccccccce-eeecCCCceeeccccCCCCCCceEEEEecc-cccccCceeE
Confidence 67999999999 89999999999 67999986 999999999999999999999999999984 89999 9999
Q ss_pred EEEEEcCHHHHHHHHh
Q psy15677 79 FGEIAEGFDILLKLNN 94 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~ 94 (96)
||.|++||+||++|++
T Consensus 262 fghv~eg~~vvrq~e~ 277 (298)
T KOG0111|consen 262 FGHVVEGMNVVRQVEQ 277 (298)
T ss_pred EeeecchHHHHHHHHh
Confidence 9999999999999986
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.98 E-value=3e-32 Score=181.80 Aligned_cols=87 Identities=41% Similarity=0.749 Sum_probs=80.9
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+||||+||+.++|+++.++|+ ..|++|..+.++|+++|+||||++++++++|||||++.+ .|+|| +|+||
T Consensus 47 ~~f~iq~Gd~~~~g~g~~~~~~-------~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~-~~~Ld~~~tvF 118 (153)
T cd01928 47 KGFMVQTGDPTGTGKGGESIWG-------KKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAK-QPHLDGKYTVF 118 (153)
T ss_pred CCCEEEccccCCCCCCCCccCC-------CccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCC-CcccCCCceEE
Confidence 6899999999999999999888 568899877889988999999999999999999999986 79999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||||++|+++
T Consensus 119 G~V~~G~dvl~~I~~~ 134 (153)
T cd01928 119 GKVIDGFETLDTLEKL 134 (153)
T ss_pred EEEEeCHHHHHHHHcC
Confidence 9999999999999975
No 14
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.98 E-value=6.5e-32 Score=181.11 Aligned_cols=87 Identities=41% Similarity=0.791 Sum_probs=81.1
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+||||+||++++|+++.++|+ ..+++|..+.++|+++|+||||++++++++|||||++.+ .|+|| +|+||
T Consensus 46 ~~~~iq~Gd~~~~g~~~~~~~g-------~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~-~~~Ld~~~~vF 117 (159)
T cd01923 46 RNFMIQGGDPTGTGRGGESIWG-------KPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRS-CKHLDGKHTVF 117 (159)
T ss_pred CCcEEEecccCCCCCCCccccC-------CccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCccEE
Confidence 6899999999999999999998 568888777889999999999999999999999999996 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++|||+|++|+++
T Consensus 118 G~V~~G~~vl~~I~~~ 133 (159)
T cd01923 118 GRVVGGLETLEAMENV 133 (159)
T ss_pred EEEEcCHHHHHHHHcC
Confidence 9999999999999975
No 15
>KOG0415|consensus
Probab=99.97 E-value=3.9e-31 Score=194.09 Aligned_cols=96 Identities=61% Similarity=1.041 Sum_probs=92.8
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
.+|++|+|||+|+|.||.|||+..+++..++|++|+.|.++|.+.|+|||++.+.|.+||||||||++++.+|| +|+||
T Consensus 47 ~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvf 126 (479)
T KOG0415|consen 47 RDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVF 126 (479)
T ss_pred ccceeecCCCCCCCCCcceeeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEcccccccccccccee
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEEcCHHHHHHHHhhC
Q psy15677 80 GEIAEGFDILLKLNNAI 96 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~~ 96 (96)
|+|.||+|+|.+|+.+|
T Consensus 127 GqV~EG~dtl~kiNea~ 143 (479)
T KOG0415|consen 127 GQVAEGFDTLTKINEAI 143 (479)
T ss_pred eehhhhHHHHHHHHHHh
Confidence 99999999999999875
No 16
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.97 E-value=2.3e-30 Score=174.20 Aligned_cols=86 Identities=44% Similarity=0.773 Sum_probs=78.2
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+||||+||+. ++|+++.++|+ ..+++|+. .++|+++|+||||+.++++++|||||++.+ .|+|| +|+|
T Consensus 60 ~~~~iq~Gd~~~~~g~~~~~~~g-------~~~~~e~~-~~~h~~~G~lsma~~~~~~~~sqFfIt~~~-~~~Ld~~~tv 130 (164)
T cd01926 60 PDFMIQGGDFTRGNGTGGKSIYG-------EKFPDENF-KLKHTGPGLLSMANAGPNTNGSQFFITTVK-TPWLDGKHVV 130 (164)
T ss_pred CCcEEEcCCccCCCCCCCCcccC-------CccCCCCc-cccCCCccEEEeeECCCCCcccEEEEEeCC-CCccCCcccE
Confidence 68999999986 78888889998 45788864 789988999999999999999999999996 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 131 FG~V~~G~dvl~~i~~~ 147 (164)
T cd01926 131 FGKVVEGMDVVKKIENV 147 (164)
T ss_pred EEEEEEcHHHHHHHHcC
Confidence 99999999999999875
No 17
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.97 E-value=3.8e-30 Score=176.49 Aligned_cols=86 Identities=38% Similarity=0.658 Sum_probs=78.0
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|||||||+. ++|+|+.++|+ ..|++|+. .++|+++|+||||++++++++||||||+.+ .|+|| +|+|
T Consensus 78 ~~f~iqgGd~~~~~g~g~~~~~g-------~~f~~e~~-~~~h~~~G~lsma~~g~~s~~sqFfIt~~~-~p~Ldg~~tV 148 (186)
T PLN03149 78 KDFMIQGGDFLKGDGTGCVSIYG-------SKFEDENF-IAKHTGPGLLSMANSGPNTNGCQFFITCAK-CDWLDNKHVV 148 (186)
T ss_pred CCcEEEcCCcccCCCCCcccccC-------CccCCccc-ccccCCCCEEEEeeCCCCCcccEEEEECCC-CCccCCCceE
Confidence 68999999985 88999999998 45777864 678999999999999999999999999986 89999 9999
Q ss_pred EEEEE-cCHHHHHHHHhh
Q psy15677 79 FGEIA-EGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi-~G~dvl~~I~~~ 95 (96)
||||+ +|||||++|+++
T Consensus 149 FG~Vi~eG~dvl~~I~~~ 166 (186)
T PLN03149 149 FGRVLGDGLLVVRKIENV 166 (186)
T ss_pred EEEEEECcHHHHHHHHcC
Confidence 99999 799999999975
No 18
>PTZ00060 cyclophilin; Provisional
Probab=99.96 E-value=9.5e-30 Score=174.07 Aligned_cols=86 Identities=42% Similarity=0.764 Sum_probs=78.0
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
|+|+||+||+. ++|+++.++|+ ..+++|.. .++|.++|+||||++++++++|||||++.+ .|+|| +|+|
T Consensus 76 ~~~~iqgGd~~~~~g~~g~~~~g-------~~~~~e~~-~~~h~~~G~lsma~~g~~~~~sqFfIt~~~-~~~Ldg~~tv 146 (183)
T PTZ00060 76 PQFMCQGGDITNHNGTGGESIYG-------RKFTDENF-KLKHDQPGLLSMANAGPNTNGSQFFITTVP-CPWLDGKHVV 146 (183)
T ss_pred CCCeEEeCCccCCCCCCCCcccc-------cccCCccc-cccCCCCCEEEeccCCCCCCcceEEEEeCC-CcccCCCccE
Confidence 78999999987 67888989998 45777854 788998999999999999999999999986 89999 9999
Q ss_pred EEEEEcCHHHHHHHHhh
Q psy15677 79 FGEIAEGFDILLKLNNA 95 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~~ 95 (96)
||||++|||||++|+++
T Consensus 147 FG~Vi~G~dvl~~I~~~ 163 (183)
T PTZ00060 147 FGKVIEGMEVVRAMEKE 163 (183)
T ss_pred EEEEEccHHHHHHHHcc
Confidence 99999999999999874
No 19
>PTZ00221 cyclophilin; Provisional
Probab=99.96 E-value=3.1e-29 Score=178.18 Aligned_cols=82 Identities=33% Similarity=0.462 Sum_probs=73.1
Q ss_pred CeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEEE
Q psy15677 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVFG 80 (96)
Q Consensus 2 ~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vFG 80 (96)
+||||+||+++. +.++|| ..|++|+. .++|+++|+||||+++|++++||||||+.+ .|+|| +|+|||
T Consensus 117 ~f~iqgGD~~~~---g~s~~G-------~~f~dE~~-~~~h~~~G~LsMan~GpntngSQFfITl~~-~p~LDgk~vVFG 184 (249)
T PTZ00221 117 NNIIVLGELDSF---NVSSTG-------TPIADEGY-RHRHTERGLLTMISEGPHTSGSVFGITLGP-SPSLDFKQVVFG 184 (249)
T ss_pred CCEEEeCCCCCC---CccCCC-------CcccCccc-cccCCCCCEEEeCcCCCCCccceEEEECCC-CCccCCCceEEE
Confidence 489999998743 346677 56899975 789999999999999999999999999996 89999 999999
Q ss_pred EEEcCHHHHHHHHhh
Q psy15677 81 EIAEGFDILLKLNNA 95 (96)
Q Consensus 81 ~Vi~G~dvl~~I~~~ 95 (96)
||++|||||++|+++
T Consensus 185 rVveGmdVv~kIe~v 199 (249)
T PTZ00221 185 KAVDDLSLLEKLESL 199 (249)
T ss_pred EEEeCHHHHHHHHcC
Confidence 999999999999975
No 20
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.96 E-value=1e-28 Score=167.31 Aligned_cols=87 Identities=41% Similarity=0.745 Sum_probs=79.2
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|||||||+.++|+++.++|+ ..|++|..+.++|+++|+||||++++++++|||||++.+ .|+|| +|+||
T Consensus 52 ~~f~iQgGd~~~~g~g~~s~~g-------~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~-~~~ldg~~tvF 123 (171)
T cd01925 52 PGFIIQGGDPTGTGTGGESIYG-------EPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDK-ADELNNKHTLF 123 (171)
T ss_pred CCcEEEccccCCCCccCcccCC-------CccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCC-CcccCCCceEE
Confidence 7899999999999999999998 568888777888999999999999999999999999986 89999 99999
Q ss_pred EEEEc-CHHHHHHHHhh
Q psy15677 80 GEIAE-GFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~-G~dvl~~I~~~ 95 (96)
|||++ ++++|++|+++
T Consensus 124 G~V~g~~~~~v~~i~~~ 140 (171)
T cd01925 124 GKVTGDTIYNLLKLAEV 140 (171)
T ss_pred EEEEECcHHHHHHHhcC
Confidence 99994 68889999875
No 21
>KOG0865|consensus
Probab=99.96 E-value=1.9e-29 Score=170.22 Aligned_cols=85 Identities=39% Similarity=0.717 Sum_probs=79.9
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceE
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCV 78 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~v 78 (96)
++||+||||++ ++|+|+.|+|+ +.|+||+. .|+|..+|+|||||.+||+|+|||||++.. ..||| +|+|
T Consensus 61 ~~fm~qggDft~hngtggkSiy~-------ekF~DenF-ilkhtgpGiLSmaNagpntngsqffictak-tewLdgkhVV 131 (167)
T KOG0865|consen 61 PGFMCQGGDFTCHNGTGGKSIYG-------EKFDDENF-ILKHTGPGILSMANAGPNTNGSQFFICTAK-TEWLDGKHVV 131 (167)
T ss_pred cceeeccCcccccCCccceEecc-------cccCCcCc-EEecCCCCeeehhhcCCCccccEEEEEccc-cccccCceeE
Confidence 47999999999 89999999998 46899986 999999999999999999999999999995 79999 9999
Q ss_pred EEEEEcCHHHHHHHHh
Q psy15677 79 FGEIAEGFDILLKLNN 94 (96)
Q Consensus 79 FG~Vi~G~dvl~~I~~ 94 (96)
||+|.+||+++++|+.
T Consensus 132 fGkv~eGm~iv~a~e~ 147 (167)
T KOG0865|consen 132 FGKVKEGMDIVEAMER 147 (167)
T ss_pred cCceEcccchhhhhhc
Confidence 9999999999999985
No 22
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.95 E-value=9.6e-28 Score=163.38 Aligned_cols=91 Identities=32% Similarity=0.518 Sum_probs=68.1
Q ss_pred CCeEEEeCCCCCCCCCC---------------------CccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecC--CCC
Q psy15677 1 ANFIAQTGDPTGVGTGG---------------------SSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCG--EGL 57 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg---------------------~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~--~~~ 57 (96)
|+|||||||+++++.+. .++|+..... ....+++ +.+.|+.+|+||||+++ |++
T Consensus 44 ~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~G~laMa~~~~~~ns 120 (176)
T cd01924 44 GGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQPVYGKTLEE--AGRYDEQ-PVLPFNAFGAIAMARTEFDPNS 120 (176)
T ss_pred CCcEEEecCCCCCCCCcccccccccccccceecccCCCCCccCccccc--ccccccc-cccccCCCCeEEEccCCCCCCC
Confidence 68999999998654332 2344421000 0012333 35566679999999988 699
Q ss_pred ccceEEEEeCC------CCCCCC-CceEEEEEEcCHHHHHHHHh
Q psy15677 58 LGSQFFITLGP------DLKSLN-EHCVFGEIAEGFDILLKLNN 94 (96)
Q Consensus 58 ~~sqFfI~~~~------~~~~ld-~~~vFG~Vi~G~dvl~~I~~ 94 (96)
++|||||++.+ ..|+|| +|+|||||++|||||++|++
T Consensus 121 ~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~ 164 (176)
T cd01924 121 ASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164 (176)
T ss_pred ccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcC
Confidence 99999999983 489999 99999999999999999975
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.94 E-value=7e-27 Score=156.16 Aligned_cols=84 Identities=27% Similarity=0.355 Sum_probs=67.4
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecC-CCCccceEEEEeCCCCCCCC-----
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCG-EGLLGSQFFITLGPDLKSLN----- 74 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~-~~~~~sqFfI~~~~~~~~ld----- 74 (96)
|+||||+||+...+.+ ..++ ..+++|....++ +++|+||||+++ |++++|||||++.+ .++||
T Consensus 44 ~~f~iQ~Gd~~~~~~~--~~~~-------~~~~~e~~~~~~-~~~G~v~ma~~~~~~s~~SqFfI~~~~-~~~ld~~~~~ 112 (155)
T cd01920 44 SGFVIQGGGFTPDLAQ--KETL-------KPIKNEAGNGLS-NTRGTIAMARTNAPDSATSQFFINLKD-NASLDYQNEQ 112 (155)
T ss_pred CCcEEEeCCCCCCCCc--cccC-------CcccCccccccc-CCceEEEECCCCCCCCccceEEEECCC-chhcCCcccC
Confidence 7899999999854333 2223 346777554444 569999999976 99999999999996 78998
Q ss_pred -CceEEEEEEcCHHHHHHHHhh
Q psy15677 75 -EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 75 -~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
+|+|||+|++|||||++|+++
T Consensus 113 ~~ytvFG~V~eG~dvl~~I~~~ 134 (155)
T cd01920 113 WGYTVFGEVTEGMDVVDKIAGV 134 (155)
T ss_pred CCccEEEEEecCHHHHHHHHcC
Confidence 389999999999999999976
No 24
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.94 E-value=1.3e-26 Score=156.20 Aligned_cols=83 Identities=25% Similarity=0.399 Sum_probs=65.9
Q ss_pred CCeEEEeCCCC-CCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecC-CCCccceEEEEeCCCCCCCC----
Q psy15677 1 ANFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCG-EGLLGSQFFITLGPDLKSLN---- 74 (96)
Q Consensus 1 ~~f~iQgGD~~-~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~-~~~~~sqFfI~~~~~~~~ld---- 74 (96)
|+|||||||+. +.+. ..++ ..+++|....++| ++|+||||+.+ |++++|||||++.+ .++||
T Consensus 46 ~~f~iQgGd~~~~~~~---~~~~-------~~~~~e~~~~~~~-~~G~lsma~~~~p~s~~SQFfI~~~~-~~~ld~~~~ 113 (164)
T PRK10791 46 NGFMIQGGGFEPGMKQ---KATK-------EPIKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVD-NDFLNFSGE 113 (164)
T ss_pred cCcEEEeCCcCCCCCc---CCCC-------CCcCCcccccccC-CCcEEEECCCCCcCCccceEEEEecC-chhhccccc
Confidence 68999999975 2221 1233 3577776556666 58999999986 99999999999986 56664
Q ss_pred -----CceEEEEEEcCHHHHHHHHhh
Q psy15677 75 -----EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 75 -----~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
+|+|||||++|||||++|+++
T Consensus 114 ~~d~~~~tvFG~V~eG~dvl~~I~~~ 139 (164)
T PRK10791 114 SLQGWGYCVFAEVVEGMDVVDKIKGV 139 (164)
T ss_pred ccCCCCccEEEEEecCHHHHHHHHcC
Confidence 599999999999999999875
No 25
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.94 E-value=2e-26 Score=158.57 Aligned_cols=84 Identities=23% Similarity=0.324 Sum_probs=67.3
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecC-CCCccceEEEEeCCCCCCCC-----
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCG-EGLLGSQFFITLGPDLKSLN----- 74 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~-~~~~~sqFfI~~~~~~~~ld----- 74 (96)
|+|||||||+.+...+ ..++ ..+++|....++| ++|+||||+++ +++++|||||++.+ .++||
T Consensus 75 ~~f~iQgG~~~~~~~~--~~~~-------~~~~~e~~~~l~~-~~G~lama~~~~~~sn~SQFfIt~~~-~~~ld~~~~d 143 (190)
T PRK10903 75 PGFMIQGGGFTEQMQQ--KKPN-------PPIKNEADNGLRN-TRGTIAMARTADKDSATSQFFINVAD-NAFLDHGQRD 143 (190)
T ss_pred CCceEEeCCcCCCCCC--CCCC-------CcccCcccccCcC-CCcEEEeCCCCCCCCcccEEEEECcC-cccccCCccC
Confidence 7999999998754322 2233 3577776555545 59999999976 99999999999996 67776
Q ss_pred -CceEEEEEEcCHHHHHHHHhh
Q psy15677 75 -EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 75 -~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
+|+|||+|++|||||++|+++
T Consensus 144 g~ytvFG~V~eG~dvl~~I~~~ 165 (190)
T PRK10903 144 FGYAVFGKVVKGMDVADKISQV 165 (190)
T ss_pred CCccEEEEEecCHHHHHHHHcC
Confidence 699999999999999999975
No 26
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.93 E-value=8.9e-26 Score=148.42 Aligned_cols=86 Identities=42% Similarity=0.709 Sum_probs=73.8
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|+||+||+...+.++ +.++ +.+++|..+...|.++|+|+|+++++++++|||||++.+ .++|| +|+||
T Consensus 44 ~~~~iq~Gd~~~~~~~~-~~~~-------~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~-~~~ld~~~~vf 114 (146)
T cd00317 44 PGFMIQGGDPTGTGGGG-SGPG-------YKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAP-TPHLDGKHTVF 114 (146)
T ss_pred CCCeEEECCCCCCCCCC-CcCC-------CccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCceEE
Confidence 68999999998554432 3344 568889887766888999999999999999999999986 89999 99999
Q ss_pred EEEEcCHHHHHHHHhh
Q psy15677 80 GEIAEGFDILLKLNNA 95 (96)
Q Consensus 80 G~Vi~G~dvl~~I~~~ 95 (96)
|||++||++|++|+++
T Consensus 115 G~V~~G~~vl~~I~~~ 130 (146)
T cd00317 115 GKVVEGMDVVDKIERG 130 (146)
T ss_pred EEEeCCHHHHHHHHcC
Confidence 9999999999999875
No 27
>KOG0885|consensus
Probab=99.93 E-value=1.8e-26 Score=170.00 Aligned_cols=76 Identities=45% Similarity=0.864 Sum_probs=73.4
Q ss_pred CCeEEEeCCCCCCCCCCCccccCccCCCCCcCCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEE
Q psy15677 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVF 79 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~~~~~~~~~~~~~~~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vF 79 (96)
|+|++|||||+++|+||.|||| ++|.+|++++|++.++|+|+|||.+.+.||||||+||++ +|+|+ +|++|
T Consensus 59 p~f~~Qggdp~~~gtGgesiyg-------~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~-~~el~nk~tiF 130 (439)
T KOG0885|consen 59 PGFLVQGGDPTGTGTGGESIYG-------RPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGD-TPELNNKHTIF 130 (439)
T ss_pred cchhcccCCCCCCCCCcccccc-------ccchhhcCcceeeeccceeeecccCCCCCCceEEEEecC-ChHhcccCcee
Confidence 7999999999999999999999 689999999999999999999999999999999999997 89999 99999
Q ss_pred EEEEc
Q psy15677 80 GEIAE 84 (96)
Q Consensus 80 G~Vi~ 84 (96)
|+|+.
T Consensus 131 GKVtG 135 (439)
T KOG0885|consen 131 GKVTG 135 (439)
T ss_pred eeecc
Confidence 99985
No 28
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.89 E-value=4.7e-23 Score=136.48 Aligned_cols=86 Identities=43% Similarity=0.644 Sum_probs=69.5
Q ss_pred CCeEEEeCCCCCCCCCCC--ccccCccCCCCCcCCCCcC-CCCCCCCCceEEEeecC--CCCccceEEEEeCCCCCCCC-
Q psy15677 1 ANFIAQTGDPTGVGTGGS--SVFGLAYGDHARYYEAETQ-PKIPHSKPGLVSMVHCG--EGLLGSQFFITLGPDLKSLN- 74 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~gg~--~~~~~~~~~~~~~~~~e~~-~~l~h~~~G~lsma~~~--~~~~~sqFfI~~~~~~~~ld- 74 (96)
|+++||+||+.+.+..+. ...+ ..+++|.. ..+.| ++|+|+|++.+ +++++|||||+|.+ .++||
T Consensus 47 ~~~~i~~G~~~~~~~~~~~~~~~~-------~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~-~~~ld~ 117 (155)
T PF00160_consen 47 PNFVIQGGDPTGNGGYGREDSTGG-------EPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSD-APHLDG 117 (155)
T ss_dssp TTTEEEESSTTTSSSSTSEEBTTB-------SCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSC-GGGGTT
T ss_pred ccceeeeeeccCCCCcccccccCc-------cccccccccccccc-cceeeeecccccCCCCCCceEEeeccC-CCcccc
Confidence 689999999986544111 1122 35888874 35667 69999999986 89999999999996 79999
Q ss_pred CceEEEEEEcCHHHHHHHHhh
Q psy15677 75 EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 75 ~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
+|+|||+|++||+||++|+++
T Consensus 118 ~~~vfG~V~~G~~vl~~i~~~ 138 (155)
T PF00160_consen 118 KYTVFGRVIEGMDVLDKIEAG 138 (155)
T ss_dssp TSEEEEEEEEHHHHHHHHHTS
T ss_pred ceeeeeEEehhHHHHHHHHCC
Confidence 999999999999999999874
No 29
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.65 E-value=0.062 Score=42.09 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=38.5
Q ss_pred CCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCCCceEEEEEEcCHHHHH
Q psy15677 32 YEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILL 90 (96)
Q Consensus 32 ~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld~~~vFG~Vi~G~dvl~ 90 (96)
.+.|+. .-.++|+|++-+.|.+.. ..||--.+..+.+ .|+|+|+|+.|||+++
T Consensus 247 ~p~En~---~~R~rGtVTVRn~G~G~G--~VYIYredr~ss~-sHtvVG~V~~GiELid 299 (503)
T TIGR03268 247 KPEENI---EKRRRGAVTVRNSGVGEG--RVYIYREDRPSSL-SHNVVGHVTRGIELID 299 (503)
T ss_pred CCcccc---CcccceeEEEEeeccCce--eEEEEcCCCCCCc-ccceeEEEecceeeee
Confidence 455543 234589999999886654 7888776522222 6999999999999875
No 30
>PRK00969 hypothetical protein; Provisional
Probab=94.28 E-value=0.088 Score=41.33 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=38.4
Q ss_pred CCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCCCceEEEEEEcCHHHHH
Q psy15677 32 YEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILL 90 (96)
Q Consensus 32 ~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld~~~vFG~Vi~G~dvl~ 90 (96)
.+.|+. .-.++|+|++-+.|.+.. ..||--.+ .+.--.|+|+|+|+.|||+++
T Consensus 250 ~p~En~---~~R~~GtVTVRt~G~g~G--~vYIyred-r~ss~sHtvVG~V~~GiELi~ 302 (508)
T PRK00969 250 IPEENF---EPRRRGTVTVRTAGVGVG--KVYIYRED-RPSSLSHTVVGRVTHGIELID 302 (508)
T ss_pred CCcccc---CccccceEEEEeeccCce--eEEEECCC-CCCCccceeEEEEecceeeee
Confidence 455543 234589999999886654 78997765 222226999999999999875
No 31
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=88.26 E-value=0.4 Score=37.02 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=37.0
Q ss_pred CCCCcCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCCCceEEEEEEcCHHHHH
Q psy15677 32 YEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGFDILL 90 (96)
Q Consensus 32 ~~~e~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld~~~vFG~Vi~G~dvl~ 90 (96)
.+.|+. .+ ..+|.+++-|.|-++. .-||.-.+..+.| .|.|.|||++||++++
T Consensus 249 ~~~en~-d~--RerG~iTvRn~GvgeG--rvYIyRedR~ss~-sHnvVGrV~eGiELid 301 (512)
T COG4070 249 VPEENF-DL--RERGAITVRNVGVGEG--RVYIYREDRPSSL-SHNVVGRVIEGIELID 301 (512)
T ss_pred CChhhh-hh--hhcceEEEEeeecccc--eEEEEecCCCCcc-ccceeeeeecceEEEE
Confidence 455543 32 3489999999886544 6788776532323 6999999999999875
No 32
>KOG0882|consensus
Probab=82.70 E-value=4.3 Score=32.07 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=44.1
Q ss_pred cCCCCCCCCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEEEEEEcCHHHHHHHHhh
Q psy15677 36 TQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVFGEIAEGFDILLKLNNA 95 (96)
Q Consensus 36 ~~~~l~h~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vFG~Vi~G~dvl~~I~~~ 95 (96)
....++|+ .-++........-.+-+|++.-.. .+-+. +..|||+|..+-++++.|+++
T Consensus 184 l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 184 LNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cccccccc-chhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhcc
Confidence 34578887 567777666655556688887764 66777 999999999999999998764
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=80.70 E-value=3.7 Score=32.46 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=38.8
Q ss_pred CCCceEEEeecCCCCccceEEEEeCCCCCCC--C-CceEEEEEEcCHHHHHHHHh
Q psy15677 43 SKPGLVSMVHCGEGLLGSQFFITLGPDLKSL--N-EHCVFGEIAEGFDILLKLNN 94 (96)
Q Consensus 43 ~~~G~lsma~~~~~~~~sqFfI~~~~~~~~l--d-~~~vFG~Vi~G~dvl~~I~~ 94 (96)
..++.|.+.-+|-+...+.+-|.-.+..... . ..-+||+|+.|..+|+++..
T Consensus 110 y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~ 164 (503)
T TIGR03268 110 YERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSD 164 (503)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccC
Confidence 3478899999997777777777666533222 3 56899999999999998753
No 34
>PRK00969 hypothetical protein; Provisional
Probab=80.39 E-value=3.4 Score=32.72 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=37.5
Q ss_pred CCCceEEEeecCCCCccceEEEEeCCCCCCCC--CceEEEEEEcCHHHHHHHHh
Q psy15677 43 SKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN--EHCVFGEIAEGFDILLKLNN 94 (96)
Q Consensus 43 ~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld--~~~vFG~Vi~G~dvl~~I~~ 94 (96)
..++.|.+..+|-+...+.+-|.-.+...... .--+||+|+.|..+|+++.+
T Consensus 114 y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 114 YERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence 34788999999977666666666654322222 23899999999999998764
No 35
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=54.42 E-value=9.8 Score=28.80 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=33.0
Q ss_pred CCCceEEEeecCCCCccceEEEEeCCCCCCCC-CceEEEEEEc-CHHHHHHHH
Q psy15677 43 SKPGLVSMVHCGEGLLGSQFFITLGPDLKSLN-EHCVFGEIAE-GFDILLKLN 93 (96)
Q Consensus 43 ~~~G~lsma~~~~~~~~sqFfI~~~~~~~~ld-~~~vFG~Vi~-G~dvl~~I~ 93 (96)
..+|.|.+.|........+.-|++.+ .|. | +.-|.|+|.+ -+.+|+-|.
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~d-lp~-d~rvNViG~V~~~d~~LLd~I~ 348 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKD-LPA-DERVNVIGRVDEEDLPLLDYIK 348 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS--B----TTEEEEEEE-GGGGGGGGG--
T ss_pred ccCceEEEeCCCccccccEEEEEccc-CCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 34899999999888888899999986 665 6 8999999996 566666554
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=38.87 E-value=43 Score=22.35 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=15.8
Q ss_pred ceEEEEEEcCHHHHHHHHh
Q psy15677 76 HCVFGEIAEGFDILLKLNN 94 (96)
Q Consensus 76 ~~vFG~Vi~G~dvl~~I~~ 94 (96)
-.+|++|++|+|-|.++-+
T Consensus 112 GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 112 GNHFATITEGLEELAEACR 130 (147)
T ss_dssp EEEEEEEEESHHHHHHHHH
T ss_pred eeEEEEEcCCHHHHHHHHH
Confidence 5799999999998877643
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=30.85 E-value=43 Score=21.21 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=25.9
Q ss_pred CCceEEEeecCCCCccceEEEEeCCCCC-------CCC-CceEEEEEEcCHHHHHHHHh
Q psy15677 44 KPGLVSMVHCGEGLLGSQFFITLGPDLK-------SLN-EHCVFGEIAEGFDILLKLNN 94 (96)
Q Consensus 44 ~~G~lsma~~~~~~~~sqFfI~~~~~~~-------~ld-~~~vFG~Vi~G~dvl~~I~~ 94 (96)
..|.|+.-..+. .|-|-+++ .| .+- ...++|||.++.+.++++..
T Consensus 61 ~~GDi~Yw~pg~-----~l~ifyg~-~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 61 EAGDIAYWPPGG-----ALAIFYGD-TPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp -TTEEEEECCCT-----EEEEESS---TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cCceEEEeCCCC-----EEEEEecC-cccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 468887664332 25555553 32 344 78999999999998887753
No 38
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=24.77 E-value=59 Score=23.03 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=12.2
Q ss_pred CCeEEEeCCCCCCCC
Q psy15677 1 ANFIAQTGDPTGVGT 15 (96)
Q Consensus 1 ~~f~iQgGD~~~~g~ 15 (96)
|+|+|.+||++.+++
T Consensus 56 ~D~vvitGDl~~~~~ 70 (275)
T PRK11148 56 FDLIVATGDLAQDHS 70 (275)
T ss_pred CCEEEECCCCCCCCC
Confidence 589999999986543
No 39
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=24.52 E-value=60 Score=22.35 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.8
Q ss_pred CCeEEEeCCCCCCC
Q psy15677 1 ANFIAQTGDPTGVG 14 (96)
Q Consensus 1 ~~f~iQgGD~~~~g 14 (96)
|+.+|.+||++..|
T Consensus 34 ~D~~v~tGDl~~~~ 47 (301)
T COG1409 34 PDLLVVTGDLTNDG 47 (301)
T ss_pred CCEEEEccCcCCCC
Confidence 68999999999663
No 40
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=24.45 E-value=73 Score=18.93 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=10.5
Q ss_pred CCeEEEeCCCCCC
Q psy15677 1 ANFIAQTGDPTGV 13 (96)
Q Consensus 1 ~~f~iQgGD~~~~ 13 (96)
++++|.+||+...
T Consensus 32 ~d~ii~~GD~~~~ 44 (200)
T PF00149_consen 32 PDFIIFLGDLVDG 44 (200)
T ss_dssp TSEEEEESTSSSS
T ss_pred CCEEEeecccccc
Confidence 5789999998743
No 41
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=21.89 E-value=72 Score=18.18 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=11.2
Q ss_pred CCC-CceEEEEEEcC
Q psy15677 72 SLN-EHCVFGEIAEG 85 (96)
Q Consensus 72 ~ld-~~~vFG~Vi~G 85 (96)
-+| .-.++|||++|
T Consensus 15 V~d~~G~~vG~vveG 29 (64)
T PF12396_consen 15 VVDDDGNVVGRVVEG 29 (64)
T ss_pred EECCCCCEEEEEecC
Confidence 345 67799999998
No 42
>KOG2239|consensus
Probab=20.61 E-value=97 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=15.0
Q ss_pred eEEEEeCC---CCCCCCCceEEEEE
Q psy15677 61 QFFITLGP---DLKSLNEHCVFGEI 82 (96)
Q Consensus 61 qFfI~~~~---~~~~ld~~~vFG~V 82 (96)
.+|+...| ..|..|.|+|||..
T Consensus 95 ilfvI~kPdVyKsp~sdtYiiFGea 119 (209)
T KOG2239|consen 95 ILFVITKPDVYKSPASDTYIIFGEA 119 (209)
T ss_pred EEEEecCCceeccCCCceEEEeccc
Confidence 44544444 34677799999997
No 43
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=20.20 E-value=88 Score=19.40 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.4
Q ss_pred CCeEEEeCCCCCCC
Q psy15677 1 ANFIAQTGDPTGVG 14 (96)
Q Consensus 1 ~~f~iQgGD~~~~g 14 (96)
+++++.+||+...+
T Consensus 36 ~d~vi~~GDl~~~~ 49 (144)
T cd07400 36 PDLVVITGDLTQRG 49 (144)
T ss_pred CCEEEECCCCCCCC
Confidence 58999999998543
Done!