RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15677
(96 letters)
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 100 bits (251), Expect = 1e-28
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
FI Q GDPTG G+GG S++G ++ E ++ ++ GLV+M + G GSQ
Sbjct: 72 GFIVQGGDPTGTGSGGESIYG-------APFKDEFHSRLRFNRRGLVAMANAGSHDNGSQ 124
Query: 62 FFITLGPDLKSLN-EHCVFGEIA-EGFDILLKLNNA 95
FF TLG LN +H +FG++ + +L+L+
Sbjct: 125 FFFTLGR-ADELNNKHTIFGKVTGDTVYNMLRLSEV 159
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 98.6 bits (246), Expect = 1e-27
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 2 NFIAQTG-----DPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEG 56
NF+ Q G P+ S ++ +E E ++ H G++SM + G+
Sbjct: 54 NFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKH 113
Query: 57 LLGSQFFITLGPDLKSLN-EHCVFGEIAEGFDILLKLNNA 95
S+FFIT + LN +H +FG + G D+L +
Sbjct: 114 SNLSEFFITFKS-CEHLNNKHTIFGRVVGGLDVLRQWEKL 152
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 97.3 bits (243), Expect = 1e-27
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ QTGDPTG G GG+S++G + +E E + H+ G+VSM + G GSQ
Sbjct: 48 GFMVQTGDPTGTGRGGNSIWG-------KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQ 100
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT G ++ VFG++ +G + L +L
Sbjct: 101 FFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 95.5 bits (238), Expect = 2e-26
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
NF+ Q GDPTG GTGG S +G + ++ E +P + H+ G++SM + G SQ
Sbjct: 67 NFVIQGGDPTGTGTGGESYWG-------KPFKDEFRPNLSHTGRGILSMANSGPNSNRSQ 119
Query: 62 FFITLGPDLKSLN-EHCVFGEIAEGFDILLKLNNA 95
FFIT L+ +H +FG + GFD+L + N
Sbjct: 120 FFITFRS-CAYLDKKHTIFGRVVGGFDVLTAMENV 153
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 94.7 bits (236), Expect = 2e-26
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 13/99 (13%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLL--- 58
FI Q GDPTG G GG S++G RY++ E P++ + + G++SM G
Sbjct: 64 GFIIQGGDPTGTGKGGESIYG-------RYFDDEIYPELKYDRRGILSMASKGASKKPNT 116
Query: 59 -GSQFFITLGPDLKSLN-EHCVFGEIAEGFDILLKLNNA 95
GSQFFIT L LN E+ +FG++ +GF+ L L N
Sbjct: 117 NGSQFFITYSS-LPQLNGEYVIFGKLIDGFETLNTLENC 154
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 96.0 bits (239), Expect = 2e-26
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 22/110 (20%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLL--- 58
+FI Q GDPTG G GG+ + ++ ET P++ GLV + + G
Sbjct: 69 DFIVQGGDPTGTGRGGAD-----TTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAE 123
Query: 59 -----------GSQFFITLGPDLKSLN-EHCVFGEIA-EGFDILLKLNNA 95
G+QFFITL LN + +FG++ L+K N+
Sbjct: 124 NDERGRSLGTNGNQFFITLAR-ADVLNNAYTLFGKVTGHTLYNLMKFNDL 172
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 92.0 bits (229), Expect = 4e-25
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
NF+ Q GDPTG G GG S++G + D E ++ H+ G++SM + G SQ
Sbjct: 86 NFVIQGGDPTGTGKGGKSIYGEYFED-------EINKELKHTGAGILSMSNNGPNTNSSQ 138
Query: 62 FFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFITL P D K H +F +++ + + +
Sbjct: 139 FFITLAPLPHLDGK----HTIFARVSKNMTCIENIASV 172
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 89.6 bits (223), Expect = 1e-24
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 15/98 (15%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ QTGDP+G GTGG S++G + D E + HSKP +VSM +CG GSQ
Sbjct: 53 HFMVQTGDPSGDGTGGESIWGNEFED-------EFFDHLNHSKPFMVSMANCGPNTNGSQ 105
Query: 62 FFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT P D K H VFG++ +G I+L +
Sbjct: 106 FFITTVPCPWLDFK----HTVFGKVTQGSKIVLDIEKV 139
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 89.2 bits (222), Expect = 2e-24
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ Q GDPTG G GG+S++G + D E P + + G+++M + G GSQ
Sbjct: 59 DFMIQGGDPTGTGRGGASIYGKQFED-------ELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 62 FFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNNA 95
FF+TL P D K H +FG + +G ++ ++
Sbjct: 112 FFVTLAPTQWLDGK----HTIFGRVCQGIGMVNRVGMV 145
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 89.3 bits (222), Expect = 3e-24
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ QTGDPTG G GG S++G + D E + H +P +SM + G GSQ
Sbjct: 69 GFMIQTGDPTGTGMGGESIWGGEFED-------EFHSTLRHDRPYTLSMANAGSNTNGSQ 121
Query: 62 FFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT+ P D K H VFG + +G +++ +++N
Sbjct: 122 FFITVVPTPWLDNK----HTVFGRVTKGMEVVQRISNV 155
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 89.3 bits (222), Expect = 5e-24
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ Q GDPTG G GG+S++G + D E P + + G+++M + G GSQ
Sbjct: 59 DFMIQGGDPTGTGRGGASIYGKQFED-------ELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 62 FFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNNA 95
FF+TL P D K H +FG + +G ++ ++
Sbjct: 112 FFVTLAPTQWLDGK----HTIFGRVCQGIGMVNRVGMV 145
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 71.7 bits (176), Expect = 2e-17
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 1 ANFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GDPTG G GG G + D E P++ KP L++M + G G GS
Sbjct: 85 QGFMIQGGDPTGTGRGGP---GYKFAD-------EFHPELQFDKPYLLAMANAGPGTNGS 134
Query: 61 QFFITLGPDLKSLNEHCVFGEI--AEGFDILLKLNNA 95
QFFIT+G H +FGE+ AE ++ ++
Sbjct: 135 QFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 71.7 bits (176), Expect = 2e-16
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD + GTGG S++G + D H K GL+SM + G GS
Sbjct: 79 KFMIQGGDFSNQNGTGGESIYGEKFEDEN--------FHYKHDKEGLLSMANAGSNTNGS 130
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT P D +H VFG++ +G + L N
Sbjct: 131 QFFITTVPTPHLD----GKHVVFGQVIKGMGVAKILEN 164
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 68.3 bits (168), Expect = 4e-16
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD + G G GG S++G + D + H+K L+SM + G+ GS
Sbjct: 73 DFMVQGGDFSEGNGRGGESIYGGFFEDE--------SFAVKHNKEFLLSMANRGKDTNGS 124
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT P D H VFG++ G +++ ++ N
Sbjct: 125 QFFITTKPTPHLD----GHHVVFGQVISGQEVVREIEN 158
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 67.9 bits (167), Expect = 6e-16
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 17/98 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD T G GTGG S++G + D + + H +P +VSM + G GS
Sbjct: 70 NFMIQGGDFTKGDGTGGESIYGGMFDDE--------EFVMKHDEPFVVSMANKGPNTNGS 121
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT P + N H VFG++ G +++ K+
Sbjct: 122 QFFITTTPAPHLN----NIHVVFGKVVSGQEVVTKIEY 155
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 67.6 bits (166), Expect = 7e-16
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD + G G GG S++G + D + H + L+SM + G+ GS
Sbjct: 83 NFMIQGGDFSEGNGKGGESIYGGYFKDE--------NFILKHDRAFLLSMANRGKHTNGS 134
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT P D H VFG + GF+++ ++ N
Sbjct: 135 QFFITTKPAPHLD----GVHVVFGLVISGFEVIEQIEN 168
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 68.2 bits (167), Expect = 8e-16
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHC----GEG 56
N +GD G+ +V+ PH GL+S+V G
Sbjct: 87 NNYIVSGDIYNSNGSSAGTVYCDEPIP-----PVFGDYFYPHESKGLLSLVPYTDESGNR 141
Query: 57 LLGSQFFITLGPDLKSL------NEHCVFGEIAEGFDILLKLNN 94
S F ITL S + V G++ G D+L K+N+
Sbjct: 142 YYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINS 185
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 64.9 bits (159), Expect = 9e-15
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD G GTG +S++ + D K+ HS PGL+SM + G G
Sbjct: 71 DFMIQGGDFVNGDGTGVASIYRGPFADENF--------KLRHSAPGLLSMANSGPSTNGC 122
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT D +H VFG+I +G ++ K+ N
Sbjct: 123 QFFITCSKCDWLD----GKHVVFGKIIDGLLVMRKIEN 156
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 63.3 bits (155), Expect = 3e-14
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 17/98 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD T G G+GG S++G ++ D + H +PGL+SM + G S
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSMANAGPNTNSS 116
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFITL P D K H VFG++ EG +++ ++
Sbjct: 117 QFFITLVPCPWLDGK----HVVFGKVIEGMNVVREMEK 150
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 62.9 bits (154), Expect = 4e-14
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 17/96 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD T G GTGG S++G + D K H+ PG++SM + G GS
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPDEN--------FKEKHTGPGVLSMANAGPNTNGS 117
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKL 92
QFF+ D +H VFG + EG D++ +
Sbjct: 118 QFFLCTVKTEWLD----GKHVVFGRVVEGLDVVKAV 149
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 62.2 bits (152), Expect = 7e-14
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD G GTGG S++G + D ++ H G++SM + G GS
Sbjct: 66 QFMCQGGDFVKGDGTGGKSIYGRKFDDEN--------FQLRHEGFGVLSMANSGPNTNGS 117
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKL 92
QFFI D K H VFG + +G +++ K+
Sbjct: 118 QFFICTTKCDWLDGK----HVVFGRVVDGQNVVKKM 149
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 62.2 bits (152), Expect = 9e-14
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD T GTGG S++G + D + H+ PG++SM + G GS
Sbjct: 78 GFMCQGGDFTRHNGTGGKSIYGEKFEDEN--------FILKHTGPGILSMANAGPNTNGS 129
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKL 92
QFFI D K H VFG++ EG +I+ +
Sbjct: 130 QFFICTAKTEWLDGK----HVVFGKVKEGMNIVEAM 161
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 62.3 bits (152), Expect = 9e-14
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 17/96 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD T GTGG S++G + D ++ H+K G++SM +CG GS
Sbjct: 83 GFMVQGGDYTAHNGTGGRSIYGEKFPDE--------NFELKHTKEGILSMANCGAHTNGS 134
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKL 92
QFFITLG D K H VFGE+ EG D++ K+
Sbjct: 135 QFFITLGKTQWLDEK----HVVFGEVVEGMDVVHKI 166
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 61.8 bits (151), Expect = 1e-13
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD T G GTGG S++G + D H P L+SM + G GS
Sbjct: 82 QFMIQGGDFTRGDGTGGESIYGSKFRDEN--------FVYTHDAPFLLSMANAGPNTNGS 133
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKL 92
QFFIT P D K H VFG++ EG +++ +
Sbjct: 134 QFFITTVPCPWLDGK----HVVFGKVLEGMEVVKSI 165
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 61.4 bits (150), Expect = 1e-13
Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 17/96 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD T GTGG S++G + D ++ H+KPGL+SM + G GS
Sbjct: 58 QFMLQGGDFTRHNGTGGKSIYGEKFADE--------NFQVKHTKPGLLSMANAGANTNGS 109
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKL 92
QFFIT P D K H VFGE+ EG DI+ K+
Sbjct: 110 QFFITTVPTSWLDGK----HVVFGEVIEGLDIVRKV 141
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 61.4 bits (150), Expect = 1e-13
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD T GTGG S++G + D + H PG++SM + G GS
Sbjct: 59 SFMCQAGDFTNHNGTGGKSIYGSRFPDE--------NFTLKHVGPGVLSMANAGPNTNGS 110
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKL 92
QFFI D K H VFG + EG D++ K+
Sbjct: 111 QFFICTIKTDWLDGK----HVVFGHVIEGMDVVKKI 142
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 61.4 bits (150), Expect = 1e-13
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 17/96 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD T GTGG S++G + D + H+ PGL+SM + G GS
Sbjct: 67 QFMCQGGDFTNHNGTGGKSIYGKKFDDEN--------FILKHTGPGLLSMANSGPNTNGS 118
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKL 92
QFF+T D K H VFGE+ EG D+L ++
Sbjct: 119 QFFLTCDKTDWLDGK----HVVFGEVTEGLDVLRQI 150
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 61.8 bits (151), Expect = 2e-13
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 17/96 (17%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD T G GTGG S++G + D K+ H PG VSM + G+ GS
Sbjct: 71 DFMIQGGDFTRGDGTGGKSIYGERFPDE--------NFKLKHYGPGWVSMANAGKDTNGS 122
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKL 92
QFFIT D K H VFG++ EG +++ K+
Sbjct: 123 QFFITTVKTAWLDGK----HVVFGKVLEGMEVVRKV 154
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 58.3 bits (142), Expect = 2e-12
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD T GTGG S++G + D + H G +SM + G GS
Sbjct: 67 NFMIQGGDFTNFDGTGGKSIYGEKFADE--------NLNVKHF-VGALSMANAGPNTNGS 117
Query: 61 QFFITLGP----DLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT P D + H VFG++ +G D++L++
Sbjct: 118 QFFITTAPTPWLDGR----HVVFGKVLDGMDVVLRIEK 151
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 58.5 bits (142), Expect = 4e-12
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD G+G S++G + D I H K GL+SM + G G
Sbjct: 120 EFMIQGGDFINHNGSGSLSIYGEKFDDENF--------DIKHDKEGLLSMANSGPNTNGC 171
Query: 61 QFFITLGP----DLKSLNEHCVFGEI--AEGFDILLKLNN 94
QFFIT D K + VFG I + +L K+ N
Sbjct: 172 QFFITTKKCEWLDGK----NVVFGRIIDNDSLLLLKKIEN 207
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 56.1 bits (136), Expect = 1e-11
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 19/98 (19%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD T G GTGG S++G + D H K G++SM + G GS
Sbjct: 63 NFMIQGGDFTRGNGTGGRSIYGDKFADE--------NFSRKHDKKGILSMANAGPNTNGS 114
Query: 61 QFFITLGP----DLKSLNEHCVFGEI--AEGFDILLKL 92
QFFIT D K H VFGE+ + + ++ ++
Sbjct: 115 QFFITTAVTSWLDGK----HVVFGEVADEKSYSVVKEI 148
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 57.4 bits (138), Expect = 2e-11
Identities = 24/119 (20%), Positives = 35/119 (29%), Gaps = 27/119 (22%)
Query: 2 NFIAQTGDPTGVGTGGSSV-----------FGLAYGDHARY-------YEAETQPKIPHS 43
F+ QTGDP G G + Y + Q IP +
Sbjct: 225 GFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFN 284
Query: 44 KPGLVSMVHCGEGLL--GSQFFITLGPDLKSLN-------EHCVFGEIAEGFDILLKLN 93
G ++M SQ F L + + + VFG + + D L L
Sbjct: 285 AFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 42.2 bits (100), Expect = 3e-06
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 26/99 (26%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSM-----VHCGEG 56
F+ Q G T + + E + + G ++M
Sbjct: 52 GFMIQGGGFTEQMQQKKPNPPI---------KNEADNGLRN-TRGTIAMARTADKDSA-- 99
Query: 57 LLGSQFFITLGPDLKSLNE------HCVFGEIAEGFDIL 89
SQFFI + D L+ + VFG++ +G D+
Sbjct: 100 --TSQFFINVA-DNAFLDHGQRDFGYAVFGKVVKGMDVA 135
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 42.1 bits (100), Expect = 3e-06
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 27/101 (26%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSM-----VHCGEG 56
F+ Q G + + E + + ++M H
Sbjct: 51 GFMIQGGGFEPGLKQKPT--DAPIAN-------EANNGLKNDT-YTIAMARTNDPHSA-- 98
Query: 57 LLGSQFFITL--------GPDLKSLNEHCVFGEIAEGFDIL 89
+QFFI + + VFG++ EG DI+
Sbjct: 99 --TAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIV 137
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 39.8 bits (94), Expect = 2e-05
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 29/102 (28%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSM-----VHCGEG 56
F+ Q G ++ + + E + +++ G ++M H
Sbjct: 47 GFMIQGGGFEPGMKQKATKEPI---------KNEANNGLKNTR-GTLAMARTQAPHSA-- 94
Query: 57 LLGSQFFITLGPDLKSLNE---------HCVFGEIAEGFDIL 89
+QFFI + D LN +CVF E+ +G D +
Sbjct: 95 --TAQFFINVV-DNDFLNFSGESLQGWGYCVFAEVVDGMDEV 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.047
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 15/49 (30%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAET---QPKIPHS--KP 45
N + +G P S++GL R +A + Q +IP S K
Sbjct: 376 NLVV-SGPP-------QSLYGLNL--TLRKAKAPSGLDQSRIPFSERKL 414
Score = 28.5 bits (63), Expect = 0.37
Identities = 18/97 (18%), Positives = 22/97 (22%), Gaps = 32/97 (32%)
Query: 31 YYEAETQPKIPHSKPG---LVSMVHCGEG----LLGSQ---------------------- 61
Y A K P K L V G + G Q
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 62 -FFITLGPDLKSLNEHCVFGE--IAEGFDILLKLNNA 95
L L + E +G +IL L N
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase,
primase, NHEJ, transferase; 1.65A {Mycobacterium
tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Length = 303
Score = 27.8 bits (62), Expect = 0.44
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 26 GDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFF 63
D YY + + H + G+ FF
Sbjct: 30 SDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFF 67
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ,
hydrolase/transferase complex; 1.50A {Pseudomonas
aeruginosa} PDB: 2faq_A* 2far_A*
Length = 309
Score = 26.3 bits (58), Expect = 1.4
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 26 GDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFF 63
+ A ++ + + VS+V +G+ G FF
Sbjct: 36 LELAEFHARYADLLLRDLRERPVSLVRGPDGIGGELFF 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 2.1
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 33 EAETQPKIPHSKPGL 47
+A + S P L
Sbjct: 26 QASLKLYADDSAPAL 40
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM
superfamily, biosynthetic protein; HET: MP5; 2.10A
{Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Length = 612
Score = 25.1 bits (55), Expect = 5.1
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 21 FGLAY-GDHARYYEAETQPKIPHSKPGLVSMVHCG 54
F L + AR + ET PK H SM CG
Sbjct: 533 FNLGLDPETARKFHDETLPKEAHKTAHFCSM--CG 565
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing
complex, transferase; HET: DCM; 1.60A {Enterobacteria
phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Length = 246
Score = 24.6 bits (54), Expect = 5.7
Identities = 6/18 (33%), Positives = 7/18 (38%), Gaps = 2/18 (11%)
Query: 5 AQTGDPTGVGTGGSSVFG 22
D TGV T + G
Sbjct: 23 DFVVDKTGVKT--IEIIG 38
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 24.4 bits (54), Expect = 6.8
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 20 VFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQF 62
++ +A G + ++ PG+ M + G G QF
Sbjct: 330 IYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQF 372
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 24.4 bits (53), Expect = 7.8
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 1 ANFIAQTGD--PTGVGTGGSSVFGLAYGDHARYYEA 34
N I++T D GV GG G + DH Y+
Sbjct: 671 NNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQD 706
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.141 0.428
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,467,105
Number of extensions: 73311
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 54
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)