RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15677
(96 letters)
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 64.4 bits (156), Expect = 3e-15
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ Q GDPTG G GG+S++G + +E E P + + G+++M + G GSQ
Sbjct: 59 DFMIQGGDPTGTGRGGASIYG-------KQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FF+TL P +H +FG + +G ++ ++
Sbjct: 112 FFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMV 145
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 57.1 bits (137), Expect = 2e-12
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ QTGDPTG G GG+S++G + +E E + H+ G+VSM + G GSQ
Sbjct: 48 GFMVQTGDPTGTGRGGNSIWG-------KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQ 100
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT G ++ VFG++ +G + L +L
Sbjct: 101 FFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 54.5 bits (130), Expect = 3e-11
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGDP-TGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD G G+GG S++G ++ D + H +PGL+SM + G S
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDEN--------FNMKHDQPGLLSMANAGPNTNSS 116
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFITL P +H VFG++ EG +++ ++
Sbjct: 117 QFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKE 151
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 52.8 bits (126), Expect = 1e-10
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
NF+ Q GDPTG GTGG S +G + ++ E +P + H+ G++SM + G SQ
Sbjct: 48 NFVIQGGDPTGTGTGGESYWG-------KPFKDEFRPNLSHTGRGILSMANSGPNSNRSQ 100
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT +H +FG + GFD+L + N
Sbjct: 101 FFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV 134
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 50.1 bits (119), Expect = 9e-10
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD T G GTGG S++G A+ ++ H+KPGL+SM + G GS
Sbjct: 57 DFMLQGGDFTAGNGTGGKSIYG--------AKFADENFQLKHNKPGLLSMANAGPNTNGS 108
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
QFFIT +H VFGE+ +G +++ +
Sbjct: 109 QFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEA 142
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 49.8 bits (118), Expect = 1e-09
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 27 DHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNEHCVFGEIAEGF 86
+ Y+E E ++ H+ G++SM + G SQFFITL P +H +F +++
Sbjct: 82 IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 141
Query: 87 DILLKLNNA 95
+ + +
Sbjct: 142 TCIENIASV 150
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 48.7 bits (115), Expect = 4e-09
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD T GTGG S++G + K+ H G VSM + G GS
Sbjct: 63 DFMIQGGDFTARDGTGGMSIYG--------ETFPDENFKLKHYGIGWVSMANAGPDTNGS 114
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFITL +H VFG++ +G ++ +
Sbjct: 115 QFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQ 149
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 47.9 bits (113), Expect = 7e-09
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD T GTGG S++G + + G VSM + G GS
Sbjct: 61 NFMIQGGDFTNFDGTGGKSIYG---------TRFDDENLKIKHFVGAVSMANAGPNSNGS 111
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFF+T P H VFG++ EG D++ K+ N
Sbjct: 112 QFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENT 146
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 47.9 bits (113), Expect = 8e-09
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD T G GTGG S++G + D + H +P +VSM + G GS
Sbjct: 67 NFMIQGGDFTKGDGTGGESIYGGMFDDEE--------FVMKHDEPFVVSMANKGPNTNGS 118
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFIT P N H VFG++ G +++ K+
Sbjct: 119 QFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYL 153
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 47.6 bits (112), Expect = 9e-09
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
+F+ QTGDP+G GTGG S++G + D + HSKP +VSM +CG GSQ
Sbjct: 49 HFMVQTGDPSGDGTGGESIWGNEFEDEF-------FDHLNHSKPFMVSMANCGPNTNGSQ 101
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT P +H VFG++ +G I+L +
Sbjct: 102 FFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKV 135
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 47.5 bits (112), Expect = 1e-08
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ Q GDPTG G GG + E P++ KP L++M + G G GSQ
Sbjct: 66 GFMIQGGDPTGTGRGG----------PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQ 115
Query: 62 FFITLGPDLKSLNEHCVFGEI--AEGFDILLKLNNA 95
FFIT+G H +FGE+ AE ++ ++
Sbjct: 116 FFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT 151
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 47.5 bits (112), Expect = 1e-08
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGDPT-GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD T G GTGG S++G A+ K+ H G +SM + G GS
Sbjct: 62 DFMIQGGDFTRGDGTGGRSIYG--------EKFADENFKLKHYGAGWLSMANAGADTNGS 113
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFIT H VFG+I EG D++ K+
Sbjct: 114 QFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQT 148
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 47.1 bits (111), Expect = 1e-08
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 2 NFIAQTGDP-TGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD G GTGG S++G + D K H+ PG++SM + G GS
Sbjct: 66 NFMIQGGDFTRGNGTGGESIYGEKFPD--------ENFKEKHTGPGVLSMANAGPNTNGS 117
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
QFF+ +H VFG + EG D++ + +
Sbjct: 118 QFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVES 151
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 46.0 bits (108), Expect = 4e-08
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGD-PTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
F+ Q GD GTGG S++G + D H K GL+SM + G GS
Sbjct: 78 KFMIQGGDFSNQNGTGGESIYGEKFEDEN--------FHYKHDKEGLLSMANAGSNTNGS 129
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFIT P +H VFG++ +G + L N
Sbjct: 130 QFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENV 164
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 44.6 bits (104), Expect = 1e-07
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
F+ QTGDPTG G GG +E E + H +P +SM + G GSQ
Sbjct: 57 GFMIQTGDPTGTGMGG-------ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQ 109
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FFIT+ P N+H VFG + +G +++ +++N
Sbjct: 110 FFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV 143
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 42.5 bits (99), Expect = 8e-07
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 2 NFIAQTGDP-TGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
NF+ Q GD G GTGG S++G A+ H K G++SM + G GS
Sbjct: 62 NFMIQGGDFTRGNGTGGRSIYG--------DKFADENFSRKHDKKGILSMANAGPNTNGS 113
Query: 61 QFFITLGPDLKSLNEHCVFGEIAE--GFDILLKLNNA 95
QFFIT +H VFGE+A+ + ++ ++
Sbjct: 114 QFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEAL 150
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 41.0 bits (95), Expect = 3e-06
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 3 FIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQF 62
I G G G R A+ K+ HS PGL+SM + G G QF
Sbjct: 64 VIKDFMIQGGDFVNG---DGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQF 120
Query: 63 FITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
FIT +H VFG+I +G ++ K+ N
Sbjct: 121 FITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV 153
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 39.4 bits (91), Expect = 1e-05
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 2 NFIAQTGD-PTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGS 60
+F+ Q GD GTGG S++G + + H PG++SM + G GS
Sbjct: 58 SFMCQAGDFTNHNGTGGKSIYG--------SRFPDENFTLKHVGPGVLSMANAGPNTNGS 109
Query: 61 QFFITLGPDLKSLNEHCVFGEIAEGFDILLKLNNA 95
QFFI +H VFG + EG D++ K+ +
Sbjct: 110 QFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESF 144
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 36.8 bits (84), Expect = 9e-05
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 14 GTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSL 73
G + G + I H K GL+SM + G G QFFIT
Sbjct: 82 GGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLD 141
Query: 74 NEHCVFGEIAEG--FDILLKLNNA 95
++ VFG I + +L K+ N
Sbjct: 142 GKNVVFGRIIDNDSLLLLKKIENV 165
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 35.3 bits (80), Expect = 3e-04
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 25 YGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLKSLNE-----HCVF 79
+ E + +++ + + SQFFI + + + + VF
Sbjct: 66 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 80 GEIAEGFDILLKLNNA 95
G++ +G D+ K++
Sbjct: 126 GKVVKGMDVADKISQV 141
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 29.9 bits (66), Expect = 0.026
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 2 NFIAQTGDPTGVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQ 61
GTGG S++G + D + H+ PGL+SM + G GSQ
Sbjct: 58 FMCQGGDFTNHNGTGGKSIYGKKFDDE--------NFILKHTGPGLLSMANSGPNTNGSQ 109
Query: 62 FFITLGPDLKSLNEHCVFGEIAEGFDILLKLNN 94
FF+T +H VFGE+ EG D+L ++
Sbjct: 110 FFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEA 142
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 28.8 bits (64), Expect = 0.086
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 12 GVGTGGSSVFGLAYGDHARYYEAETQPKIPHSKPGLVSMVHCGEGLLGSQFFITLGPDLK 71
GV TGGS+V + R E P++ S L S G + + +G L
Sbjct: 149 GVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA-LASKA-TGFPIAKVAAKLAVGYTLD 206
Query: 72 SLNEHCVFGEIAEGFD 87
L G F+
Sbjct: 207 ELMNDITGGRTPASFE 222
>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga
maritima [TaxId: 2336]}
Length = 285
Score = 23.1 bits (49), Expect = 6.8
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 39 KIPHSKPGLVSMVHCGEGLLGSQFFI 64
S G V H G G +G +
Sbjct: 259 DEIISPMGKVITTHVGPGTVGFGIEV 284
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.141 0.428
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 354,050
Number of extensions: 13294
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 24
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)