Query psy15682
Match_columns 224
No_of_seqs 159 out of 1201
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 18:50:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0326 HtpG Molecular chapero 100.0 8.2E-49 1.8E-53 377.1 16.4 172 1-189 42-215 (623)
2 KOG0020|consensus 100.0 2.8E-47 6E-52 356.3 10.8 179 1-196 110-294 (785)
3 PTZ00130 heat shock protein 90 100.0 4.9E-46 1.1E-50 367.7 17.7 177 1-193 103-281 (814)
4 PTZ00272 heat shock protein 83 100.0 1.2E-44 2.6E-49 355.8 19.7 178 1-194 40-217 (701)
5 KOG0019|consensus 100.0 2.4E-44 5.2E-49 342.5 11.5 166 1-186 72-238 (656)
6 PRK05218 heat shock protein 90 100.0 3.1E-35 6.8E-40 286.7 16.1 166 1-184 41-210 (613)
7 PRK14083 HSP90 family protein; 100.0 2.9E-35 6.2E-40 286.0 12.1 167 15-185 19-197 (601)
8 PF13589 HATPase_c_3: Histidin 99.4 5.1E-14 1.1E-18 113.1 -0.6 92 25-124 9-103 (137)
9 TIGR00585 mutl DNA mismatch re 99.2 4.4E-11 9.6E-16 108.2 8.2 153 25-186 29-195 (312)
10 COG1389 DNA topoisomerase VI, 99.1 1.7E-10 3.7E-15 108.9 8.0 123 46-178 70-205 (538)
11 PRK04184 DNA topoisomerase VI 98.8 1.5E-08 3.3E-13 98.2 10.3 119 48-176 74-203 (535)
12 TIGR01052 top6b DNA topoisomer 98.7 7E-08 1.5E-12 92.8 10.3 118 49-176 65-194 (488)
13 PRK14868 DNA topoisomerase VI 98.7 7.9E-08 1.7E-12 96.1 9.0 114 49-173 82-206 (795)
14 PRK00095 mutL DNA mismatch rep 98.6 1.5E-07 3.3E-12 92.8 7.6 141 26-175 30-180 (617)
15 PF00183 HSP90: Hsp90 protein; 98.3 5.1E-07 1.1E-11 87.8 4.2 42 158-199 1-42 (531)
16 PRK05559 DNA topoisomerase IV 98.1 4E-06 8.6E-11 83.1 6.8 150 25-186 44-212 (631)
17 PRK14867 DNA topoisomerase VI 98.1 1.1E-05 2.3E-10 80.2 8.5 115 49-173 73-197 (659)
18 smart00433 TOP2c Topoisomerase 97.9 1.7E-05 3.7E-10 78.1 6.1 146 25-184 8-174 (594)
19 TIGR01055 parE_Gneg DNA topois 97.9 2.1E-05 4.5E-10 78.0 6.1 151 25-185 37-204 (625)
20 TIGR01059 gyrB DNA gyrase, B s 97.9 3.7E-05 7.9E-10 76.6 7.6 148 25-186 37-201 (654)
21 PRK05644 gyrB DNA gyrase subun 97.8 7.1E-05 1.5E-09 74.4 8.2 146 25-185 44-207 (638)
22 COG0323 MutL DNA mismatch repa 97.8 2.5E-05 5.4E-10 77.6 4.3 151 26-185 31-195 (638)
23 PF02518 HATPase_c: Histidine 97.7 4.6E-05 9.9E-10 57.6 4.6 63 20-109 25-87 (111)
24 PRK14939 gyrB DNA gyrase subun 97.7 0.00035 7.6E-09 70.7 11.2 148 25-185 44-209 (756)
25 COG0187 GyrB Type IIA topoisom 97.0 0.0057 1.2E-07 60.5 10.4 156 23-188 41-213 (635)
26 TIGR01058 parE_Gpos DNA topois 96.7 0.0088 1.9E-07 59.7 9.7 149 25-185 41-207 (637)
27 PTZ00109 DNA gyrase subunit b; 96.2 0.044 9.6E-07 56.5 10.9 155 23-185 134-357 (903)
28 PHA02569 39 DNA topoisomerase 96.1 0.031 6.8E-07 55.5 9.2 126 49-185 79-223 (602)
29 cd00075 HATPase_c Histidine ki 96.0 0.021 4.5E-07 40.1 5.5 55 49-115 34-92 (103)
30 PRK10755 sensor protein BasS/P 95.9 0.016 3.5E-07 51.9 5.8 49 45-107 276-324 (356)
31 PTZ00108 DNA topoisomerase 2-l 95.8 0.034 7.4E-07 59.8 8.7 129 49-185 94-241 (1388)
32 PRK10604 sensor protein RstB; 95.7 0.021 4.5E-07 53.4 5.9 49 45-103 346-394 (433)
33 PLN03128 DNA topoisomerase 2; 95.6 0.066 1.4E-06 56.8 9.8 129 49-185 86-234 (1135)
34 PRK09470 cpxA two-component se 95.4 0.039 8.4E-07 50.7 6.4 48 46-103 381-428 (461)
35 PRK10549 signal transduction h 95.4 0.034 7.3E-07 51.4 5.9 52 45-106 381-432 (466)
36 smart00387 HATPase_c Histidine 95.4 0.032 7E-07 39.8 4.6 50 49-109 38-87 (111)
37 KOG1979|consensus 95.2 0.042 9E-07 54.2 6.2 129 45-182 53-196 (694)
38 PLN03237 DNA topoisomerase 2; 95.2 0.057 1.2E-06 58.3 7.7 129 49-185 111-259 (1465)
39 PRK15347 two component system 94.6 0.043 9.3E-07 55.4 4.6 56 48-117 544-603 (921)
40 TIGR02916 PEP_his_kin putative 94.5 0.06 1.3E-06 53.4 5.5 47 45-106 608-654 (679)
41 PRK11006 phoR phosphate regulo 94.5 0.084 1.8E-06 48.9 6.1 52 45-106 346-397 (430)
42 PRK11100 sensory histidine kin 94.4 0.092 2E-06 48.2 6.0 23 47-69 399-421 (475)
43 KOG1978|consensus 94.3 0.049 1.1E-06 54.3 4.1 126 45-181 46-189 (672)
44 PRK09303 adaptive-response sen 94.0 0.067 1.5E-06 49.3 4.4 48 48-107 305-352 (380)
45 PRK11466 hybrid sensory histid 93.8 0.12 2.7E-06 52.3 6.0 59 45-117 589-651 (914)
46 TIGR01386 cztS_silS_copS heavy 93.6 0.14 3E-06 46.9 5.5 45 49-103 386-430 (457)
47 TIGR02966 phoR_proteo phosphat 93.4 0.21 4.6E-06 43.1 6.1 49 48-106 261-309 (333)
48 PRK10618 phosphotransfer inter 93.3 0.54 1.2E-05 48.9 9.8 65 48-123 599-667 (894)
49 PRK03660 anti-sigma F factor; 93.1 0.22 4.9E-06 39.2 5.4 14 49-62 75-88 (146)
50 TIGR02938 nifL_nitrog nitrogen 93.1 0.21 4.5E-06 45.7 5.9 26 45-70 420-445 (494)
51 PRK15053 dpiB sensor histidine 92.9 0.18 3.9E-06 47.9 5.4 46 48-106 468-513 (545)
52 PRK09467 envZ osmolarity senso 92.9 0.1 2.2E-06 47.8 3.5 23 48-70 361-383 (435)
53 PRK10364 sensor protein ZraS; 92.7 0.26 5.6E-06 46.0 6.0 25 45-69 377-401 (457)
54 PRK11091 aerobic respiration c 92.5 0.28 6E-06 49.1 6.3 61 48-117 430-494 (779)
55 PRK10815 sensor protein PhoQ; 92.5 0.12 2.6E-06 49.5 3.5 25 45-69 405-429 (485)
56 PRK10841 hybrid sensory kinase 92.4 0.58 1.3E-05 48.6 8.6 61 46-116 591-655 (924)
57 TIGR01925 spIIAB anti-sigma F 92.1 0.32 7E-06 37.9 5.0 13 49-61 75-87 (137)
58 PRK11107 hybrid sensory histid 91.7 0.25 5.4E-06 49.9 4.9 59 49-117 445-507 (919)
59 PRK13837 two-component VirA-li 91.5 0.45 9.8E-06 48.4 6.6 57 45-117 604-664 (828)
60 PRK10490 sensor protein KdpD; 91.5 0.32 6.8E-06 50.4 5.5 49 45-105 807-855 (895)
61 KOG1977|consensus 91.5 0.1 2.2E-06 52.9 1.9 97 49-151 50-149 (1142)
62 PRK11086 sensory histidine kin 91.1 0.48 1E-05 44.5 5.9 26 45-70 464-489 (542)
63 TIGR03785 marine_sort_HK prote 90.9 0.29 6.3E-06 49.2 4.5 51 47-107 628-678 (703)
64 PRK09835 sensor kinase CusS; P 90.6 0.44 9.6E-06 44.1 5.1 23 48-70 407-429 (482)
65 TIGR02956 TMAO_torS TMAO reduc 90.4 0.35 7.6E-06 49.2 4.6 57 49-117 612-672 (968)
66 PRK11360 sensory histidine kin 90.3 0.6 1.3E-05 43.7 5.8 21 49-69 534-554 (607)
67 COG3290 CitA Signal transducti 89.7 0.45 9.8E-06 46.7 4.4 41 48-103 462-502 (537)
68 PRK04069 serine-protein kinase 89.0 0.28 6E-06 40.2 2.2 54 49-114 78-131 (161)
69 TIGR01924 rsbW_low_gc serine-p 88.0 0.51 1.1E-05 38.7 3.1 54 49-114 78-131 (159)
70 COG0642 BaeS Signal transducti 87.5 0.85 1.8E-05 38.4 4.3 22 48-69 259-280 (336)
71 PRK10337 sensor protein QseC; 86.0 0.75 1.6E-05 42.4 3.4 21 50-70 382-402 (449)
72 PRK13557 histidine kinase; Pro 85.9 1.1 2.3E-05 41.9 4.4 56 48-117 324-383 (540)
73 COG4585 Signal transduction hi 84.1 0.81 1.8E-05 41.8 2.7 42 8-65 286-327 (365)
74 COG2205 KdpD Osmosensitive K+ 83.3 2.8 6.1E-05 43.3 6.3 55 21-103 796-850 (890)
75 COG4251 Bacteriophytochrome (l 82.5 2.1 4.6E-05 43.1 5.0 67 45-123 666-736 (750)
76 PRK09959 hybrid sensory histid 81.9 1.6 3.6E-05 45.8 4.2 57 49-117 865-925 (1197)
77 PRK11073 glnL nitrogen regulat 81.1 1.7 3.7E-05 38.5 3.5 21 49-69 281-301 (348)
78 COG3850 NarQ Signal transducti 79.7 1.1 2.5E-05 44.0 2.0 17 47-63 511-527 (574)
79 PRK10547 chemotaxis protein Ch 78.6 7 0.00015 39.6 7.3 19 49-67 430-448 (670)
80 COG4191 Signal transduction hi 75.6 3.5 7.5E-05 41.1 4.0 46 24-69 503-552 (603)
81 KOG1845|consensus 75.4 2.4 5.2E-05 43.5 3.0 52 51-117 2-54 (775)
82 PF13581 HATPase_c_2: Histidin 75.3 5.4 0.00012 30.3 4.4 60 20-112 54-113 (125)
83 PRK10600 nitrate/nitrite senso 74.7 1.7 3.7E-05 42.0 1.7 18 46-63 498-515 (569)
84 PRK11644 sensory histidine kin 71.4 1 2.3E-05 43.3 -0.6 18 46-63 439-456 (495)
85 PRK13560 hypothetical protein; 69.8 4 8.7E-05 40.1 3.0 17 47-63 746-762 (807)
86 COG2972 Predicted signal trans 68.8 19 0.00042 34.2 7.4 22 47-68 385-406 (456)
87 COG4564 Signal transduction hi 67.5 3.5 7.5E-05 38.9 1.9 20 48-67 390-409 (459)
88 KOG1845|consensus 66.8 3.8 8.2E-05 42.1 2.2 54 53-116 192-246 (775)
89 COG2172 RsbW Anti-sigma regula 63.4 14 0.00031 30.1 4.6 62 20-116 64-128 (146)
90 COG5002 VicK Signal transducti 63.4 7.9 0.00017 36.8 3.4 75 17-101 329-417 (459)
91 KOG0355|consensus 62.7 14 0.00031 38.2 5.3 124 3-151 55-192 (842)
92 PRK10935 nitrate/nitrite senso 50.9 12 0.00025 35.6 2.4 15 48-62 503-517 (565)
93 KOG0787|consensus 48.4 29 0.00064 33.1 4.6 97 19-157 287-383 (414)
94 PF07492 Trehalase_Ca-bi: Neut 46.4 16 0.00035 22.3 1.7 12 47-58 12-23 (30)
95 COG3920 Signal transduction hi 42.2 34 0.00075 29.6 3.8 15 49-63 160-174 (221)
96 COG3851 UhpB Signal transducti 41.8 27 0.00058 33.5 3.2 15 48-62 441-455 (497)
97 PF12170 DNA_pol3_tau_5: DNA p 39.6 34 0.00073 27.9 3.2 42 144-185 50-91 (142)
98 COG5000 NtrY Signal transducti 38.8 23 0.0005 35.9 2.4 48 22-69 604-660 (712)
99 PHA01746 hypothetical protein 33.1 30 0.00064 27.6 1.8 20 163-182 74-93 (131)
100 PF04355 SmpA_OmlA: SmpA / Oml 26.8 39 0.00085 23.5 1.4 14 58-71 14-27 (71)
101 KOG3938|consensus 24.1 69 0.0015 29.4 2.7 11 49-59 139-149 (334)
102 COG0643 CheA Chemotaxis protei 22.8 80 0.0017 32.4 3.2 24 45-68 473-496 (716)
103 KOG0911|consensus 21.8 70 0.0015 28.3 2.3 26 160-185 177-203 (227)
104 PF09196 DUF1953: Domain of un 21.2 1.6E+02 0.0035 20.7 3.5 32 102-133 12-43 (66)
No 1
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-49 Score=377.10 Aligned_cols=172 Identities=52% Similarity=0.855 Sum_probs=159.9
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|||||||++|++|.++..+++++|+|..|+++ ++|+|+|||||||+++++++|||||+||+++|
T Consensus 42 AidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~----------------kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F 105 (623)
T COG0326 42 AIDKLRFEALSDPELGEGDSDLRIRISFDKDN----------------KTLTISDNGIGMTKDEVIENLGTIAKSGTKEF 105 (623)
T ss_pred HHHHHHHHhccCccccCCCCCceEEEEEcccC----------------CEEEEEeCCCCCCHHHHHHHHHHhhhccHHHH
Confidence 79999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHcC-CCCCccCCccceeeeEeeecCeEEEEeeeCC-CceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCChHh
Q psy15682 81 MEALQAG-ADISMIGQFGVGFYSAYMVADKVTVTSKHND-NEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAE 158 (224)
Q Consensus 81 ~~~~~~~-~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~-~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e 158 (224)
++.+... .+.++||||||||||||||||+|+|+|++++ +.++.|+|+|.|.|+|.+.+.++. +||+|+|||+++..+
T Consensus 106 ~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~~~~~~~-~GT~I~L~Lk~~e~e 184 (623)
T COG0326 106 LESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDIDKEPR-RGTEITLHLKEEEDE 184 (623)
T ss_pred HHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEeeccCCCC-CCcEEEEEECCchHH
Confidence 9998754 4689999999999999999999999999997 567899999999999999754322 699999999999999
Q ss_pred hhcHHHHHHHHHHhccccccceEEeeeeeee
Q psy15682 159 YIEEKKIKEIVKKHSQFIGYPIKLLVEKERE 189 (224)
Q Consensus 159 ~~~~~~vk~likkys~~i~~PI~v~~~~~~~ 189 (224)
|++.++|+++|++||.||++||++.+++..+
T Consensus 185 fl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~ 215 (623)
T COG0326 185 FLEEWRLREIVKKYSDHIAYPIYIEGEKEKD 215 (623)
T ss_pred HhhhhHHHHHHHHHhcccccceEEeeecccc
Confidence 9999999999999999999999998876553
No 2
>KOG0020|consensus
Probab=100.00 E-value=2.8e-47 Score=356.32 Aligned_cols=179 Identities=55% Similarity=0.860 Sum_probs=167.9
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
||||+|+++|||+..|...+++.|+|..|+++ +.|.|.|.|||||+++|+++|||||+||+..|
T Consensus 110 AlDKIRllaLtd~~~L~~~~el~ikIK~Dke~----------------klLhi~DtGiGMT~edLi~NLGTIAkSGTs~F 173 (785)
T KOG0020|consen 110 ALDKIRLLALTDKDVLGETEELEIKIKADKEK----------------KLLHITDTGIGMTREDLIKNLGTIAKSGTSEF 173 (785)
T ss_pred hhhheeeeeccChhHhCcCcceEEEEeechhh----------------CeeeEecccCCccHHHHHHhhhhhhcccHHHH
Confidence 79999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHcCCCC-----CccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCC-CCCCCCCcEEEEEecC
Q psy15682 81 MEALQAGADI-----SMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDN-SQPLGRGTKIVLHMKE 154 (224)
Q Consensus 81 ~~~~~~~~~~-----~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~-~~~~~~GT~I~L~Lk~ 154 (224)
+++|+...+. .+|||||+||||+|+|||+|.|+|+++++.+|.|+|+++ +|+|..+| +++..+||+|+|+|++
T Consensus 174 l~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESdan-~FsvseDprg~tL~RGt~ItL~Lke 252 (785)
T KOG0020|consen 174 LEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESDAN-SFSVSEDPRGNTLGRGTEITLYLKE 252 (785)
T ss_pred HHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeeccCc-ceeeecCCCCCcccCccEEEEEehh
Confidence 9999865443 799999999999999999999999999999999999876 89999987 7789999999999999
Q ss_pred ChHhhhcHHHHHHHHHHhccccccceEEeeeeeeeeecCchH
Q psy15682 155 DQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDE 196 (224)
Q Consensus 155 ~~~e~~~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~~~~ 196 (224)
....|+++..|++||++||+||+|||+++.-+++..|++-+|
T Consensus 253 EA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEE 294 (785)
T KOG0020|consen 253 EAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEE 294 (785)
T ss_pred hhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeeccccc
Confidence 999999999999999999999999999999988877766443
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=4.9e-46 Score=367.67 Aligned_cols=177 Identities=56% Similarity=0.865 Sum_probs=161.7
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
||+|+||+++++++++..+.++.|+|..|+.. ++|+|+|||||||+++|.++|+|||+||++.|
T Consensus 103 AldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~----------------~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F 166 (814)
T PTZ00130 103 ALEKIRFLSLSDESVLGEEKKLEIRISANKEK----------------NILSITDTGIGMTKEDLINNLGTIAKSGTSNF 166 (814)
T ss_pred HHHHHHHHHcCCchhcCCCCCceEEEEECCCC----------------CEEEEEECCCCCCHHHHHHHhhhhcccccHHH
Confidence 79999999999999998888999999999988 99999999999999999999999999999999
Q ss_pred HHHHHc-CCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCC-CCCCCCCcEEEEEecCChHh
Q psy15682 81 MEALQA-GADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDN-SQPLGRGTKIVLHMKEDQAE 158 (224)
Q Consensus 81 ~~~~~~-~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~-~~~~~~GT~I~L~Lk~~~~e 158 (224)
+++++. +.+..+||||||||||||||||+|+|.||++++.+|.|+|++++.|+|...+ ..+..+||+|+|||+++..+
T Consensus 167 ~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~e 246 (814)
T PTZ00130 167 LEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKDPRGSTLKRGTRISLHLKEDATN 246 (814)
T ss_pred HHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEECCCCCCCCCCcEEEEEECCchhh
Confidence 998874 3457899999999999999999999999998888899999999999999965 33568999999999999999
Q ss_pred hhcHHHHHHHHHHhccccccceEEeeeeeeeeecC
Q psy15682 159 YIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELS 193 (224)
Q Consensus 159 ~~~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~ 193 (224)
|++.++|+++|++||.||+|||++++.+.+.++++
T Consensus 247 fl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~ 281 (814)
T PTZ00130 247 LMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVL 281 (814)
T ss_pred hccHHHHHHHHHHhhccCCCCEEEccccccccccc
Confidence 99999999999999999999999987654444443
No 4
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=1.2e-44 Score=355.78 Aligned_cols=178 Identities=66% Similarity=1.049 Sum_probs=162.6
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
||+|+||.+|+++.++...+++.|+|..|... .+|+|.|||+||++++|.++|++||+||++.|
T Consensus 40 A~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~----------------~~L~I~DnGiGMt~edl~~~LgtIa~SGt~~f 103 (701)
T PTZ00272 40 ACDKIRYQSLTDPSVLGESPRLCIRVVPDKEN----------------KTLTVEDNGIGMTKADLVNNLGTIARSGTKAF 103 (701)
T ss_pred HHHHHHHHhcCCchhcCCCCceEEEEEEcCCC----------------CEEEEEECCCCCCHHHHHHHhhhhhhcchHHH
Confidence 79999999999999888888899999999887 99999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCChHhhh
Q psy15682 81 MEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYI 160 (224)
Q Consensus 81 ~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~ 160 (224)
++.+..+.+.++|||||||||||||||++|+|.||+++..+|.|++++++.|++.+.+.....+||+|+|||+++..+|+
T Consensus 104 ~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L~Lk~d~~ef~ 183 (701)
T PTZ00272 104 MEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYL 183 (701)
T ss_pred HHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEEeCCCCCCCCCCEEEEEECCchHHhc
Confidence 98887656678999999999999999999999999887789999999999999998765556899999999999999999
Q ss_pred cHHHHHHHHHHhccccccceEEeeeeeeeeecCc
Q psy15682 161 EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSE 194 (224)
Q Consensus 161 ~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~~ 194 (224)
+.++|+++|++||.||+|||+++.++.+..++++
T Consensus 184 ~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~ 217 (701)
T PTZ00272 184 EPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTD 217 (701)
T ss_pred cHHHHHHHHHHhccccCcceEEeeccccccccCc
Confidence 9999999999999999999999876655544443
No 5
>KOG0019|consensus
Probab=100.00 E-value=2.4e-44 Score=342.53 Aligned_cols=166 Identities=55% Similarity=0.874 Sum_probs=160.2
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|||||||++|++|+.+ +++++|+|++|+++ ++|+|.|+|||||++||.++|||||+||++.|
T Consensus 72 AldKiRy~~lt~~~~~--~~~l~I~i~~nk~~----------------~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~F 133 (656)
T KOG0019|consen 72 ALEKLRYLELKGDEKA--LPELEIRIITNKDK----------------RTITIQDTGIGMTKEDLVNNLGTIAKSGSKAF 133 (656)
T ss_pred hHHHHHHHhhcCcccc--ccceeEEeccCCCc----------------ceEEEEecCCCcCHHHHHhhhhhhhhcccHHH
Confidence 8999999999999998 89999999999999 99999999999999999999999999999999
Q ss_pred HHHHH-cCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCChHhh
Q psy15682 81 MEALQ-AGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEY 159 (224)
Q Consensus 81 ~~~~~-~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~ 159 (224)
+++++ ++.+.++|||||+||||+||||++|+|+|++++++++.|+++++++|++...++ ..+||+|+|||+.++.+|
T Consensus 134 mealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~v~~~~~--~~rGTki~l~lKe~~~ey 211 (656)
T KOG0019|consen 134 LEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYEIAEASG--LRTGTKIVIHLKEGDCEF 211 (656)
T ss_pred HHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCceEEeeccC--ccccceEEeeehhhhhhh
Confidence 99999 688899999999999999999999999999998889999999999999999754 899999999999988899
Q ss_pred hcHHHHHHHHHHhccccccceEEeeee
Q psy15682 160 IEEKKIKEIVKKHSQFIGYPIKLLVEK 186 (224)
Q Consensus 160 ~~~~~vk~likkys~~i~~PI~v~~~~ 186 (224)
+++.|++++|++||.|+.|||++++++
T Consensus 212 ~ee~rikeiVKK~S~Fv~yPI~l~~ek 238 (656)
T KOG0019|consen 212 LEEKRIKEVVKKYSNFVSYPIYLNGER 238 (656)
T ss_pred ccHhHHHHHHhhccccccccchhhhhh
Confidence 999999999999999999999998877
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=3.1e-35 Score=286.74 Aligned_cols=166 Identities=52% Similarity=0.820 Sum_probs=148.7
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
||+|+||.+|+++.+..+..++.|+|..|... ++|+|+|||+|||+++|.++|++||+||++.|
T Consensus 41 A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~----------------~~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f 104 (613)
T PRK05218 41 AIDKLRFEALTDPALYEGDGDLKIRISFDKEA----------------RTLTISDNGIGMTREEVIENLGTIAKSGTKEF 104 (613)
T ss_pred HHHHHHHHhccCccccCCCCCcEEEEEEcCCC----------------CeEEEEECCCCCCHHHHHHHHHhhccccchhH
Confidence 68888999999888877777888888888776 88999999999999999999999999999999
Q ss_pred HHHHHc--CCCCCccCCccceeeeEeeecCeEEEEeeeCC--CceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCCh
Q psy15682 81 MEALQA--GADISMIGQFGVGFYSAYMVADKVTVTSKHND--NEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQ 156 (224)
Q Consensus 81 ~~~~~~--~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~--~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~ 156 (224)
++++.. ..+..++|+|||||||+||+|++|+|.||+.+ ..++.|.+.+++.|++.+.+ ...+||+|+|+|+++.
T Consensus 105 ~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~i~~~~--~~~~GT~I~l~Lk~~~ 182 (613)
T PRK05218 105 LEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYTIEEIE--KEERGTEITLHLKEDE 182 (613)
T ss_pred HHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeEEeECC--CCCCCcEEEEEECcch
Confidence 888753 23578999999999999999999999999865 45799999998899999853 2479999999999999
Q ss_pred HhhhcHHHHHHHHHHhccccccceEEee
Q psy15682 157 AEYIEEKKIKEIVKKHSQFIGYPIKLLV 184 (224)
Q Consensus 157 ~e~~~~~~vk~likkys~~i~~PI~v~~ 184 (224)
.+|++..+|+++|++||.|+++||++++
T Consensus 183 ~e~~e~~~i~~li~kys~~l~~PI~~~~ 210 (613)
T PRK05218 183 DEFLDEWRIRSIIKKYSDFIPVPIKLEK 210 (613)
T ss_pred hhhcCHHHHHHHHHHHHhcCCCCEEEec
Confidence 9999999999999999999999999955
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=286.04 Aligned_cols=167 Identities=26% Similarity=0.479 Sum_probs=143.6
Q ss_pred CcCCCCcceEE-EEecCcccccc--c--------cccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHH
Q psy15682 15 RLESEKNLHIK-IIPNKEEKTLT--I--------IDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEA 83 (224)
Q Consensus 15 ~~~~~~~~~I~-i~~n~~~a~~~--~--------i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~ 83 (224)
-+++++.++|| +++|+.||... . |++.+. +.+..+|+|+|||+|||.+++.++|++||.|+++.+.
T Consensus 19 ~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~-- 95 (601)
T PRK14083 19 HLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDEN-- 95 (601)
T ss_pred hhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhh--
Confidence 35688899997 99999998752 2 333322 6778999999999999999999999999999998753
Q ss_pred HHcCCCCCccCCccceeeeEeeecCeEEEEeeeC-CCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCChHhhhcH
Q psy15682 84 LQAGADISMIGQFGVGFYSAYMVADKVTVTSKHN-DNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEE 162 (224)
Q Consensus 84 ~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~-~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~~~ 162 (224)
+ ...+..+||||||||||+||+|++|+|.|++. +..++.|++.+++.|++...+.+...+||+|+|+++++..+|++.
T Consensus 96 ~-~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l~~d~~~~~~~ 174 (601)
T PRK14083 96 L-GFARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRPRPDAEEWLER 174 (601)
T ss_pred h-cccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEecCchhhhccH
Confidence 1 12346799999999999999999999999997 467899999999999999854456789999999999999999999
Q ss_pred HHHHHHHHHhccccccceEEeee
Q psy15682 163 KKIKEIVKKHSQFIGYPIKLLVE 185 (224)
Q Consensus 163 ~~vk~likkys~~i~~PI~v~~~ 185 (224)
++|++++++||.||+|||+++++
T Consensus 175 ~~i~~li~~ys~~i~~pI~l~~~ 197 (601)
T PRK14083 175 ETVEELAKKYGSLLPVPIRVEGE 197 (601)
T ss_pred HHHHHHHHHHhccCCCCcccCCc
Confidence 99999999999999999999863
No 8
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.38 E-value=5.1e-14 Score=113.07 Aligned_cols=92 Identities=30% Similarity=0.464 Sum_probs=71.1
Q ss_pred EEEecCccccccccccCCcCC-CCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccce-eee
Q psy15682 25 KIIPNKEEKTLTIIDSGFIPN-KEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVG-FYS 102 (224)
Q Consensus 25 ~i~~n~~~a~~~~i~~~~~~d-~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIG-f~S 102 (224)
++++|+-||.+..|++-+..+ .+...|.|.|||.||+.++|.. +++++.|++... + ....+|+||+| .+|
T Consensus 9 ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~~~--~-----~~~~~G~~G~G~k~A 80 (137)
T PF13589_consen 9 ELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKKSE--K-----DRQSIGRFGIGLKLA 80 (137)
T ss_dssp HHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHHHH--H-----HGGGGGGGTSGCGGG
T ss_pred HHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCCch--h-----hhhcCCCcceEHHHH
Confidence 478888888888888877765 4678999999999999999999 668988876521 1 23679999999 788
Q ss_pred EeeecCeEEEEeeeCCCc-eeEE
Q psy15682 103 AYMVADKVTVTSKHNDNE-QYIW 124 (224)
Q Consensus 103 ~Fmvad~V~V~Tk~~~~~-~~~w 124 (224)
+|+++++++|+|++.+.. .+.|
T Consensus 81 ~~~~~~~~~v~S~~~~~~~~~~~ 103 (137)
T PF13589_consen 81 IFSLGDRVEVISKTNGESFTYTI 103 (137)
T ss_dssp GGGTEEEEEEEEESTTSSSEEEE
T ss_pred HHHhcCEEEEEEEECCCCcEEEE
Confidence 899999999999987633 3444
No 9
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=4.4e-11 Score=108.18 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=96.5
Q ss_pred EEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEe
Q psy15682 25 KIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAY 104 (224)
Q Consensus 25 ~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~F 104 (224)
+|+.|+-||-+..|.+-+.. .+...|.|.|||.||+.+++...+.....|-...+ +.+ ......|.+|.|++|..
T Consensus 29 eLi~Na~dA~a~~I~i~~~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~-~~~---~~~~~~G~rG~al~si~ 103 (312)
T TIGR00585 29 ELVENSLDAGATRIDVEIEE-GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSF-EDL---ERIETLGFRGEALASIS 103 (312)
T ss_pred HHHHHHHHCCCCEEEEEEEe-CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCCh-hHh---hcccccCccchHHHHHH
Confidence 36666666555544443322 12246999999999999999986654433322222 111 23467899999999999
Q ss_pred eecCeEEEEeee-CC-CceeEEEeCCCCceEEeeCCCCCCCCCcEEEEE-ec---CChHhhhc-----HHHHHHHHHHhc
Q psy15682 105 MVADKVTVTSKH-ND-NEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLH-MK---EDQAEYIE-----EKKIKEIVKKHS 173 (224)
Q Consensus 105 mvad~V~V~Tk~-~~-~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~-Lk---~~~~e~~~-----~~~vk~likkys 173 (224)
.+| +|+|.|++ .+ ..++.|...+. .+.........+||+|++. |- +....|+. ...++.++++|+
T Consensus 104 ~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~a 179 (312)
T TIGR00585 104 SVS-RLTITTKTSAADGLAWQALLEGG---MIEEIKPAPRPVGTTVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYA 179 (312)
T ss_pred hhC-cEEEEEeecCCCcceEEEEECCC---cCcccccccCCCccEEEEchhhccCchhhhhccCcHHHHHHHHHHHHHHh
Confidence 999 89999997 33 44677774432 1211112334799999997 21 11122322 357889999997
Q ss_pred ---cccccceEEeeee
Q psy15682 174 ---QFIGYPIKLLVEK 186 (224)
Q Consensus 174 ---~~i~~PI~v~~~~ 186 (224)
+.+.|.+..++..
T Consensus 180 l~~p~i~f~l~~~~~~ 195 (312)
T TIGR00585 180 LIHPDVSFSLTHDGKK 195 (312)
T ss_pred hcCCCeEEEEEECCEE
Confidence 6677888776443
No 10
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.11 E-value=1.7e-10 Score=108.90 Aligned_cols=123 Identities=20% Similarity=0.282 Sum_probs=85.4
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec-----CeEEEEeeeCC-C
Q psy15682 46 KEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA-----DKVTVTSKHND-N 119 (224)
Q Consensus 46 ~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva-----d~V~V~Tk~~~-~ 119 (224)
.+..++.|+|||+|++.+.+.+.||++..+++ |+ ...+..||+|||..+|.|.| ..|.|+|+..+ .
T Consensus 70 ~d~y~v~veDNGpGIP~e~IPkvFGk~LygSK--fh------~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~ 141 (538)
T COG1389 70 KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSK--FH------RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSG 141 (538)
T ss_pred CceEEEEEecCCCCCChhHhHHHHHHHhccch--hh------hhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCc
Confidence 34599999999999999999999999998766 53 23578899999998887764 78999999876 3
Q ss_pred ceeEEE--eCCC-Cc-eEEee--CCCCCCCCCcEEEEEecCChHhhhcHHH-HHHHHHHhcccccc
Q psy15682 120 EQYIWE--SSAG-GS-FTIKP--DNSQPLGRGTKIVLHMKEDQAEYIEEKK-IKEIVKKHSQFIGY 178 (224)
Q Consensus 120 ~~~~w~--s~~~-~~-~~v~~--~~~~~~~~GT~I~L~Lk~~~~e~~~~~~-vk~likkys~~i~~ 178 (224)
..+.++ .+-+ ++ -.+.. .+....+|||+|.|+++.++ |-...+ +.+++++-+---|+
T Consensus 142 ~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~~--~~~~~qgi~eYlkrtaiinPh 205 (538)
T COG1389 142 TAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGVW--YRAKRQGIYEYLKRTAIINPH 205 (538)
T ss_pred ceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEecccc--hhhcccCHHHHHHHHhhcCCc
Confidence 444432 2211 22 22222 12234589999999999885 223334 66777765444343
No 11
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.84 E-value=1.5e-08 Score=98.22 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=79.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecC-----eEEEEeeeCCCc-e
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVAD-----KVTVTSKHNDNE-Q 121 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad-----~V~V~Tk~~~~~-~ 121 (224)
...|.|+|||+||+.+++...|.....+++ |. ...+..|++|+|+.++.+++. .+.|.|+..+.. .
T Consensus 74 ~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK--~~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~ 145 (535)
T PRK04184 74 HYRVTVEDNGPGIPPEEIPKVFGKLLYGSK--FH------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKA 145 (535)
T ss_pred EEEEEEEcCCCCCCHHHHHHHhhhhhcccc--cc------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceE
Confidence 478999999999999999998877544332 21 113456999999999987764 599999886544 4
Q ss_pred eEEEeC--C--CCceEEeeCC-CCCCCCCcEEEEEecCChHhhhcHHHHHHHHHHhcccc
Q psy15682 122 YIWESS--A--GGSFTIKPDN-SQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFI 176 (224)
Q Consensus 122 ~~w~s~--~--~~~~~v~~~~-~~~~~~GT~I~L~Lk~~~~e~~~~~~vk~likkys~~i 176 (224)
+.+... . +..-.+.... ....++||+|.+.+..+.. ....++.++|++++-.-
T Consensus 146 ~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~l~~~~~--~~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 146 YYFELKIDTKKNEPIILEREEVDWDRWHGTRVELEIEGDWY--RAKQRIYEYLKRTAIVN 203 (535)
T ss_pred EEEEEEecccccCCeeccccccCCCCCCCEEEEEEECCcCh--hhHHHHHHHHHHHHHhC
Confidence 554432 1 1111111111 1235789999999987642 22678889999886544
No 12
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.72 E-value=7e-08 Score=92.76 Aligned_cols=118 Identities=20% Similarity=0.232 Sum_probs=78.1
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecC-----eEEEEeeeCCCc-ee
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVAD-----KVTVTSKHNDNE-QY 122 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad-----~V~V~Tk~~~~~-~~ 122 (224)
..|+|.|||.||+.+++...|.....+++ |. ...+..|++|+|+.++.+++. .++|.|+..+.. ++
T Consensus 65 ~~I~V~DNG~GIp~edl~~iF~rf~~tsK--~~------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~ 136 (488)
T TIGR01052 65 YKVTVEDNGPGIPEEYIPKVFGKMLAGSK--FH------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVY 136 (488)
T ss_pred EEEEEEECCCCCCHHHHHhhhhhccccCc--cc------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEE
Confidence 57999999999999999998887654433 21 123566999999999988875 499999987533 33
Q ss_pred EEEeC-----CCCce-EEeeCCCCCCCCCcEEEEEecCChHhhhcHHHHHHHHHHhcccc
Q psy15682 123 IWESS-----AGGSF-TIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFI 176 (224)
Q Consensus 123 ~w~s~-----~~~~~-~v~~~~~~~~~~GT~I~L~Lk~~~~e~~~~~~vk~likkys~~i 176 (224)
.++.. ..+.. ...+. ....++||+|.+.+...... ....++.+++++++-.-
T Consensus 137 ~~~~~id~~~n~G~i~~~~~~-~~~~~~GT~V~v~f~~~~~r-~~k~~i~e~l~~~Al~n 194 (488)
T TIGR01052 137 KMKLKIDVQKNEGEIVEKGEW-NKPGWRGTRIELEFKGVSYR-RSKQGVYEYLRRTAVAN 194 (488)
T ss_pred EEEEEecccccCCeecceeec-CCCCCCceEEEEEECCceee-ccHHHHHHHHHHHHhhC
Confidence 44432 12221 11121 12236899999997654311 13468888888886443
No 13
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.66 E-value=7.9e-08 Score=96.09 Aligned_cols=114 Identities=21% Similarity=0.314 Sum_probs=77.6
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec-----CeEEEEeeeCCC-cee
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA-----DKVTVTSKHNDN-EQY 122 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva-----d~V~V~Tk~~~~-~~~ 122 (224)
..|.|.|||+||+.+++...|...+.+++ |. ...+..|+.|+|+.++.+++ ..+.|.|+..+. .++
T Consensus 82 v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~------~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~ 153 (795)
T PRK14868 82 YRLVVEDNGPGITKEQIPKVFGKLLYGSR--FH------AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQ 153 (795)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhhhccccc--cc------ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCcee
Confidence 68999999999999999999987765443 31 11245689999999988776 459999997653 345
Q ss_pred EEE--eCCC-CceEE--eeCCCCCCCCCcEEEEEecCChHhhhcHHHHHHHHHHhc
Q psy15682 123 IWE--SSAG-GSFTI--KPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHS 173 (224)
Q Consensus 123 ~w~--s~~~-~~~~v--~~~~~~~~~~GT~I~L~Lk~~~~e~~~~~~vk~likkys 173 (224)
.|+ .+.+ +.-.+ .....-..++||+|.+.|..+ |....++.++|++++
T Consensus 154 ~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~Lf~N---~pAR~kI~eyl~r~A 206 (795)
T PRK14868 154 YFELIIDTDTNEPEISVEETTTWDRPHGTRIELEMEAN---MRARQQLHDYIKHTA 206 (795)
T ss_pred EEEEEEecCCCccceecceecccCCCCceEEEEEEEcc---CchhhhHHHHHHHHH
Confidence 444 3332 22222 111122357999999998765 344567788888874
No 14
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=98.55 E-value=1.5e-07 Score=92.76 Aligned_cols=141 Identities=23% Similarity=0.323 Sum_probs=87.2
Q ss_pred EEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee
Q psy15682 26 IIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM 105 (224)
Q Consensus 26 i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm 105 (224)
|+.|+-||-+..|++-+. +++...|+|.|||.||+.++|...+..-+.|--..+ +.+ ......|-.|.|+.|.-.
T Consensus 30 lveNsiDAgat~I~v~i~-~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~-~dl---~~~~t~GfrGeAL~sI~~ 104 (617)
T PRK00095 30 LVENALDAGATRIDIEIE-EGGLKLIRVRDNGCGISKEDLALALARHATSKIASL-DDL---EAIRTLGFRGEALPSIAS 104 (617)
T ss_pred HHHHHHhCCCCEEEEEEE-eCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCCh-hHh---hccccCCcchhHHHhhhh
Confidence 556666655555555552 233468999999999999999987754333221111 111 123567899999988877
Q ss_pred ecCeEEEEeeeCC-CceeEEEeCCCCceEEeeCCCCCCCCCcEEEEE-e---cCChHhhhc-----HHHHHHHHHHhccc
Q psy15682 106 VADKVTVTSKHND-NEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLH-M---KEDQAEYIE-----EKKIKEIVKKHSQF 175 (224)
Q Consensus 106 vad~V~V~Tk~~~-~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~-L---k~~~~e~~~-----~~~vk~likkys~~ 175 (224)
++ +|+|.|++.+ ..+|.+...++....+.+ ....+||+|++. | -+....|+. -..+.+++++|+-.
T Consensus 105 vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~---~~~~~GT~V~v~~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~ 180 (617)
T PRK00095 105 VS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP---AAHPVGTTIEVRDLFFNTPARRKFLKSEKTELGHIDDVVNRLALA 180 (617)
T ss_pred ce-EEEEEEecCCCCceEEEEecCCcCcceec---ccCCCCCEEEechhhccCcHHHHhccCcHHHHHHHHHHHHHHhhc
Confidence 77 8999999865 345665544332222222 224689999995 2 122333432 23678888888644
No 15
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=98.30 E-value=5.1e-07 Score=87.79 Aligned_cols=42 Identities=67% Similarity=0.978 Sum_probs=38.7
Q ss_pred hhhcHHHHHHHHHHhccccccceEEeeeeeeeeecCchHHHh
Q psy15682 158 EYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEE 199 (224)
Q Consensus 158 e~~~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~~~~~~~ 199 (224)
+|+++++|++||++||+||+|||+++..++.++|+++++++.
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~ 42 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEE 42 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhh
Confidence 589999999999999999999999999999999998887655
No 16
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.15 E-value=4e-06 Score=83.13 Aligned_cols=150 Identities=16% Similarity=0.201 Sum_probs=93.8
Q ss_pred EEEecCcccc----ccccccCCcCCCCCcEEEEEeCCCCCCHHHHHH--------hhchhccccchhHHHHHHcCCCCCc
Q psy15682 25 KIIPNKEEKT----LTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVN--------NLGTTAKSGTKASMEALQAGADISM 92 (224)
Q Consensus 25 ~i~~n~~~a~----~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~--------~l~tIg~Sg~~~f~~~~~~~~~~~~ 92 (224)
+|+-|+.|+. +..|++.+..+ ..|+|+|||.||+.+.+.. .|+++-.+|+ |-. ......
T Consensus 44 EivdNaiDe~~ag~a~~I~V~i~~d---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsK--f~~----~~yk~S 114 (631)
T PRK05559 44 EVIDNSVDEALAGHGKRIEVTLHAD---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGK--FSN----KAYKFS 114 (631)
T ss_pred hhhccccchhhcCCCCEEEEEEeCC---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCc--cCC----cccccc
Confidence 5788888863 24555555543 4899999999999998887 6776644443 311 112256
Q ss_pred cCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCC-CceEEeeCCCC-CCCCCcEEEEEecCChHhh----hcHHHHH
Q psy15682 93 IGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAG-GSFTIKPDNSQ-PLGRGTKIVLHMKEDQAEY----IEEKKIK 166 (224)
Q Consensus 93 iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~-~~~~v~~~~~~-~~~~GT~I~L~Lk~~~~e~----~~~~~vk 166 (224)
.|.-|+|..++=.++.+++|.|++.+ ..|..+...+ ..-.+...... ...+||+|++... ..-| ++...+.
T Consensus 115 gGl~GvGls~vNalS~~l~V~s~r~g-~~~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~PD--~~iF~~~~~~~~~i~ 191 (631)
T PRK05559 115 GGLHGVGVSVVNALSSRLEVEVKRDG-KVYRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWPD--PKIFDSPKFSPERLK 191 (631)
T ss_pred CcccccchhhhhhheeeEEEEEEeCC-eEEEEEEECCcCccCccccccccCCCCCcEEEEEEC--HHHcCCcccCHHHHH
Confidence 89999999999999999999999854 3244333322 11111111111 1468999999653 2222 3556788
Q ss_pred HHHHHhccccc-cceEEeeee
Q psy15682 167 EIVKKHSQFIG-YPIKLLVEK 186 (224)
Q Consensus 167 ~likkys~~i~-~PI~v~~~~ 186 (224)
+.+++++-..| .-|.++.+.
T Consensus 192 ~~l~~~A~lnpgl~i~l~d~~ 212 (631)
T PRK05559 192 ERLRSKAFLLPGLTITLNDER 212 (631)
T ss_pred HHHHHHHhhCCCeEEEEEeCC
Confidence 88888764432 344455443
No 17
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.09 E-value=1.1e-05 Score=80.22 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=69.7
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec-----CeEEEEeeeCCCce--
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA-----DKVTVTSKHNDNEQ-- 121 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva-----d~V~V~Tk~~~~~~-- 121 (224)
..|.|.|||.||+.+++...|.....+++ |.. -.+..|+.|+|+.++-+++ ..+.|.|+..++..
T Consensus 73 ~~I~V~DNG~GIp~e~l~~iFerF~atSK--~~~------~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~ 144 (659)
T PRK14867 73 YKVAVEDNGPGIPPEFVPKVFGKMLAGSK--MHR------LIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHE 144 (659)
T ss_pred EEEEEEeeCeeCCHHHHhhhhccccccCc--ccc------eeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEE
Confidence 56999999999999999999877543322 211 1356789999998876554 45789888754432
Q ss_pred eEEEeCC--CCceEEeeCCCCCCCCCcEEEEEecCChHhhhc-HHHHHHHHHHhc
Q psy15682 122 YIWESSA--GGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIE-EKKIKEIVKKHS 173 (224)
Q Consensus 122 ~~w~s~~--~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~~-~~~vk~likkys 173 (224)
+.|...- ++.-.+........++||+|.+.+++-. |-. +.++.+++++++
T Consensus 145 i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLF--ynR~E~~i~e~l~r~A 197 (659)
T PRK14867 145 MEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVT--YNRREQGPFEYLRRIS 197 (659)
T ss_pred EEEEEEecccCCeecccccCCCCCCCcEEEEEEeece--echhhHHHHHHHHHHH
Confidence 2332321 2211111111223579999997665421 111 224777888774
No 18
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.91 E-value=1.7e-05 Score=78.13 Aligned_cols=146 Identities=19% Similarity=0.199 Sum_probs=84.4
Q ss_pred EEEecCcccc----ccccccCCcCCCCCcEEEEEeCCCCCCHHHHHH-------hhchhccccchhHHHHHHcCCCCCcc
Q psy15682 25 KIIPNKEEKT----LTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVN-------NLGTTAKSGTKASMEALQAGADISMI 93 (224)
Q Consensus 25 ~i~~n~~~a~----~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~-------~l~tIg~Sg~~~f~~~~~~~~~~~~i 93 (224)
+|+-|+.|+- +..|++-+..+ ..|+|+|||.||+.+.... .+.++..+|.+ |- ........
T Consensus 8 ElvdNAiD~~~~g~at~I~V~i~~~---g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k-fd----~~~~k~s~ 79 (594)
T smart00433 8 EIVDNAADEALAGYMDTIKVTIDKD---NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK-FD----DDAYKVSG 79 (594)
T ss_pred eehhcccchhccCCCCEEEEEEeCC---CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC-CC----CCCccccC
Confidence 4666666654 34555544333 3899999999999543221 11122222222 31 11223467
Q ss_pred CCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCc----eEEeeCCCCCCCCCcEEEEEecCChHhhhc-----HHH
Q psy15682 94 GQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGS----FTIKPDNSQPLGRGTKIVLHMKEDQAEYIE-----EKK 164 (224)
Q Consensus 94 GqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~----~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~~-----~~~ 164 (224)
|.-|+|+.|+-.++.+++|.|++.+. .|......+|. .++. +.....||+|+. .++..-|.. ...
T Consensus 80 G~~G~Gls~vnalS~~l~v~~~~~g~-~~~~~~~~~G~~~~~~~~~---~~~~~~GT~V~F--~Pd~~~F~~~~~~~~~~ 153 (594)
T smart00433 80 GLHGVGASVVNALSTEFEVEVARDGK-EYKQSFSNNGKPLSEPKII---GDTKKDGTKVTF--KPDLEIFGMTTDDDFEL 153 (594)
T ss_pred CcccchHHHHHHhcCceEEEEEeCCc-EEEEEEeCCCeECccceec---CCCCCCCcEEEE--EECHHHhCCcccchHHH
Confidence 99999999999999999999998653 34433322221 2222 223468999995 565555543 356
Q ss_pred HHHHHHHhcccc-ccceEEee
Q psy15682 165 IKEIVKKHSQFI-GYPIKLLV 184 (224)
Q Consensus 165 vk~likkys~~i-~~PI~v~~ 184 (224)
+.+.++.++-.. ..-|.++.
T Consensus 154 i~~rl~~~A~l~pgl~i~l~d 174 (594)
T smart00433 154 LKRRLRELAFLNKGVKITLND 174 (594)
T ss_pred HHHHHHHHHhcCCCcEEEEec
Confidence 777788775433 22344443
No 19
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=97.88 E-value=2.1e-05 Score=78.04 Aligned_cols=151 Identities=16% Similarity=0.166 Sum_probs=91.7
Q ss_pred EEEecCcc---c-cccccccCCcCCCCCcEEEEEeCCCCCCHHH--------HHHhhchhccccchhHHHHHHcCCCCCc
Q psy15682 25 KIIPNKEE---K-TLTIIDSGFIPNKEEKTLTIIDSGIGMTKAD--------LVNNLGTTAKSGTKASMEALQAGADISM 92 (224)
Q Consensus 25 ~i~~n~~~---a-~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~e--------L~~~l~tIg~Sg~~~f~~~~~~~~~~~~ 92 (224)
+|+-|+.| | -++.|++.+..+ ..|+|+|||.||+.++ +.-.|++.-.+|+ |-. ..-...
T Consensus 37 ElvdNsiDE~~ag~a~~I~V~i~~d---~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK--~~~----~~~~~S 107 (625)
T TIGR01055 37 EVIDNSVDEALAGFASIIMVILHQD---QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGK--FSN----KNYHFS 107 (625)
T ss_pred hhhhcccchhhcCCCCEEEEEEeCC---CeEEEEecCCccCcccccccCCcHHHHhhhcccccCC--CCC----Ccceec
Confidence 58888888 4 346676666544 7899999999999988 6666655533333 311 111256
Q ss_pred cCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCc-eEEeeC-CCCCCCCCcEEEEEecCChH--hhhcHHHHHHH
Q psy15682 93 IGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGS-FTIKPD-NSQPLGRGTKIVLHMKEDQA--EYIEEKKIKEI 168 (224)
Q Consensus 93 iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~-~~v~~~-~~~~~~~GT~I~L~Lk~~~~--e~~~~~~vk~l 168 (224)
.|.-|+|+.++=.++.+++|.|++.+.. |.++...+.. -.+... +......||+|+..-..... .-++..+|.+.
T Consensus 108 gG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD~~~F~~~~~e~~~i~~~ 186 (625)
T TIGR01055 108 GGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPDPEIFDSLHFSVSRLYHI 186 (625)
T ss_pred CCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEEEEEECHHHCCCCccCHHHHHHH
Confidence 7889999999999999999999986533 4443332211 011111 11123589999985332110 11244677888
Q ss_pred HHHhcccc-ccceEEeee
Q psy15682 169 VKKHSQFI-GYPIKLLVE 185 (224)
Q Consensus 169 ikkys~~i-~~PI~v~~~ 185 (224)
+++++-.. ..-|.++.+
T Consensus 187 l~~lA~lnpgi~~~l~de 204 (625)
T TIGR01055 187 LRAKAVLCRGVEIEFEDE 204 (625)
T ss_pred HHHHHhhCCCcEEEEeec
Confidence 88875543 334455443
No 20
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.86 E-value=3.7e-05 Score=76.59 Aligned_cols=148 Identities=15% Similarity=0.160 Sum_probs=85.4
Q ss_pred EEEecCcc---cc-ccccccCCcCCCCCcEEEEEeCCCCCCHHH--------HHHhhchhccccchhHHHHHHcCCCCCc
Q psy15682 25 KIIPNKEE---KT-LTIIDSGFIPNKEEKTLTIIDSGIGMTKAD--------LVNNLGTTAKSGTKASMEALQAGADISM 92 (224)
Q Consensus 25 ~i~~n~~~---a~-~~~i~~~~~~d~~~~~L~I~DnGiGMt~~e--------L~~~l~tIg~Sg~~~f~~~~~~~~~~~~ 92 (224)
+|+-|+.| |- +..|++.+..+ ..|+|+|||.||+.+- +...|+.+ .+|.+ |- .......
T Consensus 37 Elv~NaiDe~~ag~a~~I~V~i~~~---g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l-~ag~k-f~----~~~~k~s 107 (654)
T TIGR01059 37 EVVDNSIDEAMAGYCDTINVTINDD---GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVL-HAGGK-FD----KDSYKVS 107 (654)
T ss_pred HhhhccccccccCCCCEEEEEEeCC---CcEEEEEeCCCcCccccCcCCCCchHHheeee-cccCc-cC----CCcceec
Confidence 46677776 32 24555554432 3599999999999852 11123322 23322 31 1122356
Q ss_pred cCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceE-EeeCCCCCCCCCcEEEEEecCChHhhh----cHHHHHH
Q psy15682 93 IGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFT-IKPDNSQPLGRGTKIVLHMKEDQAEYI----EEKKIKE 167 (224)
Q Consensus 93 iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~-v~~~~~~~~~~GT~I~L~Lk~~~~e~~----~~~~vk~ 167 (224)
.|.-|+|+.|+=.++.+++|.|++.+.. |..+...+..-. +.. .+.....||+|+..-.+ .-|. +...|.+
T Consensus 108 ~G~~G~gl~~inalS~~l~v~~~~~g~~-~~~~~~~G~~~~~l~~-~~~~~~~GT~V~F~pdp--~~F~~~~~e~~~i~~ 183 (654)
T TIGR01059 108 GGLHGVGVSVVNALSEWLEVTVFRDGKI-YRQEFERGIPLGPLEV-VGETKKTGTTVRFWPDP--EIFETTEFDFDILAK 183 (654)
T ss_pred CCccchhHHHHHHhcCeEEEEEEECCeE-EEEEEeCCCcccCcee-ccCCCCCCcEEEEEECh--HHhCCcccCHHHHHH
Confidence 8999999999999999999999986532 443333221111 111 12345689999955333 2343 5567888
Q ss_pred HHHHhccccccceEEeeee
Q psy15682 168 IVKKHSQFIGYPIKLLVEK 186 (224)
Q Consensus 168 likkys~~i~~PI~v~~~~ 186 (224)
.++.++- +.--|.+....
T Consensus 184 rl~~~A~-l~pgl~i~l~~ 201 (654)
T TIGR01059 184 RLRELAF-LNSGVKISLED 201 (654)
T ss_pred HHHHhhc-cCCCeEEEEEe
Confidence 8888873 33335444443
No 21
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=97.79 E-value=7.1e-05 Score=74.40 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=84.4
Q ss_pred EEEecCcc---cc-ccccccCCcCCCCCcEEEEEeCCCCCCHHHHH--------HhhchhccccchhHHHHHHcCCCCCc
Q psy15682 25 KIIPNKEE---KT-LTIIDSGFIPNKEEKTLTIIDSGIGMTKADLV--------NNLGTTAKSGTKASMEALQAGADISM 92 (224)
Q Consensus 25 ~i~~n~~~---a~-~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~--------~~l~tIg~Sg~~~f~~~~~~~~~~~~ 92 (224)
+|+-|+.| |= +..|++-+..+ ..|+|+|||.||+.+.-. ..|+.. .+|.+ |- .......
T Consensus 44 ElvdNaiDe~~ag~a~~I~V~i~~~---g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l-hag~k-fd----~~~yk~s 114 (638)
T PRK05644 44 EIVDNSIDEALAGYCDHIEVTINED---GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVL-HAGGK-FG----GGGYKVS 114 (638)
T ss_pred HhhhcccccccCCCCCEEEEEEeCC---CcEEEEEeCccccCCccCCCCCCchHHheeee-cccCc-cC----CCccccc
Confidence 46677766 22 24555444432 489999999999986211 123222 23322 31 1112246
Q ss_pred cCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceE--EeeCCCCCCCCCcEEEEEecCChHhh----hcHHHHH
Q psy15682 93 IGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFT--IKPDNSQPLGRGTKIVLHMKEDQAEY----IEEKKIK 166 (224)
Q Consensus 93 iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~--v~~~~~~~~~~GT~I~L~Lk~~~~e~----~~~~~vk 166 (224)
.|.-|+|+.|+=.++++++|.|++.+. .|...... |... +.+. +.....||+|+. .++..-| ++...+.
T Consensus 115 ~G~~G~Gls~vnalS~~~~v~t~r~g~-~~~~~~~~-G~~~~~~~~~-~~~~~~GT~I~F--~Pd~~~F~~~~~e~~~i~ 189 (638)
T PRK05644 115 GGLHGVGVSVVNALSTWLEVEVKRDGK-IYYQEYER-GVPVTPLEVI-GETDETGTTVTF--KPDPEIFETTEFDYDTLA 189 (638)
T ss_pred CCccccchhhhhheeceEEEEEEeCCc-EEEEEEEC-CeEccCcccc-CCcCCCCcEEEE--EECHHHcCCcccCHHHHH
Confidence 799999999999999999999997653 44433332 2111 1111 222468999995 4443333 3456788
Q ss_pred HHHHHhccccccceEEeee
Q psy15682 167 EIVKKHSQFIGYPIKLLVE 185 (224)
Q Consensus 167 ~likkys~~i~~PI~v~~~ 185 (224)
+.++.++-.. .-|.+...
T Consensus 190 ~rl~~~A~l~-pgl~i~l~ 207 (638)
T PRK05644 190 TRLRELAFLN-KGLKITLT 207 (638)
T ss_pred HHHHHHHhhC-CCcEEEEE
Confidence 8888886443 23444333
No 22
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.75 E-value=2.5e-05 Score=77.62 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=86.5
Q ss_pred EEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee
Q psy15682 26 IIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM 105 (224)
Q Consensus 26 i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm 105 (224)
|+-|+-||=+..|++-+. +++...|.|+|||+||+++||.-.+.+=+.|--+.+ +.+. .....|=-|=-+.|.-.
T Consensus 31 LVENSlDAGAt~I~I~ve-~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~-~DL~---~I~TlGFRGEAL~SIas 105 (638)
T COG0323 31 LVENSLDAGATRIDIEVE-GGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASL-EDLF---RIRTLGFRGEALASIAS 105 (638)
T ss_pred HHhcccccCCCEEEEEEc-cCCccEEEEEECCCCCCHHHHHHHHhhhccccCCch-hHHH---HhhccCccHHHHHHHHh
Confidence 555565655555555443 344567999999999999999998877666643332 1111 01122222222222222
Q ss_pred ecCeEEEEeeeCC-CceeEEEeCCCCce-EEeeCCCCCCCCCcEEEEE-e--cCC-hHhhh-----cHHHHHHHHHHhc-
Q psy15682 106 VADKVTVTSKHND-NEQYIWESSAGGSF-TIKPDNSQPLGRGTKIVLH-M--KED-QAEYI-----EEKKIKEIVKKHS- 173 (224)
Q Consensus 106 vad~V~V~Tk~~~-~~~~~w~s~~~~~~-~v~~~~~~~~~~GT~I~L~-L--k~~-~~e~~-----~~~~vk~likkys- 173 (224)
.-+++|.|+..+ ..++.|...++..- ++.+. ....||+|.+. | +-. ...|+ +-..+.++|++|+
T Consensus 106 -Vsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~---a~~~GTtVeV~dLF~NtPaRrKflks~~~E~~~i~~vv~r~AL 181 (638)
T COG0323 106 -VSRLTITSRTAEASEGTQIYAEGGGMEVTVKPA---AHPVGTTVEVRDLFYNTPARRKFLKSEKTEFGHITELINRYAL 181 (638)
T ss_pred -hheeEEEeecCCcCceEEEEecCCcccccccCC---CCCCCCEEEehHhhccChHHHHhhcccHHHHHHHHHHHHHHHh
Confidence 268999999654 44566666554333 44442 23459999985 2 211 12233 3346788899984
Q ss_pred --cccccceEEeee
Q psy15682 174 --QFIGYPIKLLVE 185 (224)
Q Consensus 174 --~~i~~PI~v~~~ 185 (224)
..|.|-+..++.
T Consensus 182 ahp~I~F~l~~~gk 195 (638)
T COG0323 182 AHPDISFSLSHNGK 195 (638)
T ss_pred cCCCeEEEEEECCc
Confidence 345666655544
No 23
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=97.73 E-value=4.6e-05 Score=57.58 Aligned_cols=63 Identities=21% Similarity=0.399 Sum_probs=45.5
Q ss_pred CcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccce
Q psy15682 20 KNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVG 99 (224)
Q Consensus 20 ~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIG 99 (224)
..+.|.+..+... ..|+|+|||.||+.+++...|.....+ . ......+++|+|
T Consensus 25 ~~I~i~~~~~~~~----------------~~i~i~d~G~gi~~~~l~~~~~~~~~~-~----------~~~~~~~g~GlG 77 (111)
T PF02518_consen 25 GKIDITIEEDDDH----------------LSIEISDNGVGIPPEELEKLFEPFFTS-D----------KSETSISGHGLG 77 (111)
T ss_dssp SEEEEEEEEETTE----------------EEEEEEESSSSTTHHHHHHHCSTTSHS-S----------SSSGGSSSSSHH
T ss_pred CEEEEEEEEecCe----------------EEEEEEeccccccccccccchhhcccc-c----------ccccccCCCChH
Confidence 4556666666656 999999999999999999876433221 1 123456779999
Q ss_pred eeeEeeecCe
Q psy15682 100 FYSAYMVADK 109 (224)
Q Consensus 100 f~S~Fmvad~ 109 (224)
++.+..+++.
T Consensus 78 L~~~~~~~~~ 87 (111)
T PF02518_consen 78 LYIVKQIAER 87 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 24
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.67 E-value=0.00035 Score=70.70 Aligned_cols=148 Identities=14% Similarity=0.179 Sum_probs=83.4
Q ss_pred EEEecCcc---cc-ccccccCCcCCCCCcEEEEEeCCCCCCHH----------HHHHhhchhccccchhHHHHHHcCCCC
Q psy15682 25 KIIPNKEE---KT-LTIIDSGFIPNKEEKTLTIIDSGIGMTKA----------DLVNNLGTTAKSGTKASMEALQAGADI 90 (224)
Q Consensus 25 ~i~~n~~~---a~-~~~i~~~~~~d~~~~~L~I~DnGiGMt~~----------eL~~~l~tIg~Sg~~~f~~~~~~~~~~ 90 (224)
+|+-|+.| |= ++.|++-+..| ..|+|+|||.||+.+ ++. |.++ .+|.+ |-. ..-.
T Consensus 44 EivdNaiDE~~AG~a~~I~V~i~~d---gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt~l-hAggK-fd~----~~yk 112 (756)
T PRK14939 44 EVVDNAIDEALAGHCDDITVTIHAD---GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MTVL-HAGGK-FDQ----NSYK 112 (756)
T ss_pred HhhcccccccccCCCCEEEEEEcCC---CeEEEEEcCCcccCCcccccCCchhhhe--eeee-cccCC-CCC----Cccc
Confidence 46666665 21 14444443332 489999999999987 333 4433 33332 311 1112
Q ss_pred CccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceE-EeeCCCCCCCCCcEEEEEecCChH--hhhcHHHHHH
Q psy15682 91 SMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFT-IKPDNSQPLGRGTKIVLHMKEDQA--EYIEEKKIKE 167 (224)
Q Consensus 91 ~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~-v~~~~~~~~~~GT~I~L~Lk~~~~--e~~~~~~vk~ 167 (224)
-.-|.-|+|..++=.++++++|.|++.+. .|..+...+-.-. +... +....+||+|+..-..... .-++...|.+
T Consensus 113 vSgGlhGvG~svvNAlS~~l~v~v~r~gk-~~~q~f~~G~~~~~l~~~-g~~~~~GT~V~F~PD~~iF~~~~~~~~~i~~ 190 (756)
T PRK14939 113 VSGGLHGVGVSVVNALSEWLELTIRRDGK-IHEQEFEHGVPVAPLKVV-GETDKTGTEVRFWPSPEIFENTEFDYDILAK 190 (756)
T ss_pred ccCCccCccceEeehccCeEEEEEEeCCe-EEEEEEecCccccCcccc-CCcCCCCcEEEEEECHHHcCCcccCHHHHHH
Confidence 35788999999999999999999998653 2443333221101 1111 2234689999995332211 1135567777
Q ss_pred HHHHhcccc-ccceEEeee
Q psy15682 168 IVKKHSQFI-GYPIKLLVE 185 (224)
Q Consensus 168 likkys~~i-~~PI~v~~~ 185 (224)
.++.++-.- ..-|.++.+
T Consensus 191 rl~elA~lnpgl~i~l~de 209 (756)
T PRK14939 191 RLRELAFLNSGVRIRLKDE 209 (756)
T ss_pred HHHHHhhcCCCCEEEEecc
Confidence 777776332 234444443
No 25
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0057 Score=60.52 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=90.8
Q ss_pred eEEEEecCcc-ccc---cccccCCcCCCCCcEEEEEeCCCCCCHHH--------HHHhhchhccccchhHHHHHHcCCCC
Q psy15682 23 HIKIIPNKEE-KTL---TIIDSGFIPNKEEKTLTIIDSGIGMTKAD--------LVNNLGTTAKSGTKASMEALQAGADI 90 (224)
Q Consensus 23 ~I~i~~n~~~-a~~---~~i~~~~~~d~~~~~L~I~DnGiGMt~~e--------L~~~l~tIg~Sg~~~f~~~~~~~~~~ 90 (224)
.=+|+-|+.| |++ +.|+.-.- .+..|+|.|||.||+-+. +.-.|..+-.+|+ |-+ +.-.
T Consensus 41 v~EVvDNsiDEalaG~~~~I~V~l~---~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGK--Fd~----~~Yk 111 (635)
T COG0187 41 VWEVVDNSIDEALAGYADRIDVTLH---EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGK--FDN----DSYK 111 (635)
T ss_pred EeEeeechHhHHhhCcCcEEEEEEc---CCCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcc--cCC----CccE
Confidence 3357777776 333 44444333 238899999999999876 2323433333333 311 1112
Q ss_pred CccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCc-eEEeeCC-CCCCCCCcEEEEEecCChH--hhhcHHHHH
Q psy15682 91 SMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGS-FTIKPDN-SQPLGRGTKIVLHMKEDQA--EYIEEKKIK 166 (224)
Q Consensus 91 ~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~-~~v~~~~-~~~~~~GT~I~L~Lk~~~~--e~~~~~~vk 166 (224)
-.-|--|+|..-+=.++++++|.+++.+. -|.-....+.. -.+.... .....+||+|+.+-.+... .-++...|+
T Consensus 112 vSGGLHGVG~SVVNALS~~l~v~v~r~gk-~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~ 190 (635)
T COG0187 112 VSGGLHGVGVSVVNALSTWLEVEVKRDGK-IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDPEIFGETEFDYEILK 190 (635)
T ss_pred eecCCCccceEEEecccceEEEEEEECCE-EEEEEEeCCCcCCCceecccCCCCCCccEEEEEcChHhcCCcccCHHHHH
Confidence 35688999999899999999999999752 23222221111 1122111 2345679999877554321 114566777
Q ss_pred HHHHHhccccc-cceEEeeeeee
Q psy15682 167 EIVKKHSQFIG-YPIKLLVEKER 188 (224)
Q Consensus 167 ~likkys~~i~-~PI~v~~~~~~ 188 (224)
+-++.++=+.+ .-|.++.+...
T Consensus 191 ~RlrelA~L~~gl~I~l~d~r~~ 213 (635)
T COG0187 191 RRLRELAFLNKGVKITLTDERTG 213 (635)
T ss_pred HHHHHHhccCCCCEEEEEeccCC
Confidence 77887765554 56666555443
No 26
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.73 E-value=0.0088 Score=59.71 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=83.1
Q ss_pred EEEecCccc-cc---cccccCCcCCCCCcEEEEEeCCCCCCHHHHH--------HhhchhccccchhHHHHHHcCCCCCc
Q psy15682 25 KIIPNKEEK-TL---TIIDSGFIPNKEEKTLTIIDSGIGMTKADLV--------NNLGTTAKSGTKASMEALQAGADISM 92 (224)
Q Consensus 25 ~i~~n~~~a-~~---~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~--------~~l~tIg~Sg~~~f~~~~~~~~~~~~ 92 (224)
+|+-|+.|- ++ ..|++.+..| ..|+|.|||.||+.+.-. -.|+++-.+|+ |- .+.-.-.
T Consensus 41 EIvdNavDE~~ag~~~~I~V~i~~d---gsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgk--fd----~~~ykvS 111 (637)
T TIGR01058 41 EIVDNSVDEVLAGYADNITVTLHKD---NSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGK--FD----QGGYKTA 111 (637)
T ss_pred hhhcchhhhhhcCCCcEEEEEEcCC---CeEEEEECCCcccCcccCcCCCccceeEEEEecccCc--CC----CCccccc
Confidence 466666652 11 3444444322 689999999999864211 11333322332 31 1111245
Q ss_pred cCCccceeeeEeeecCeEEEEeeeCCCc-eeEEEeCCCCceEEeeC--CCCCCCCCcEEEEEecCChH--hhhcHHHHHH
Q psy15682 93 IGQFGVGFYSAYMVADKVTVTSKHNDNE-QYIWESSAGGSFTIKPD--NSQPLGRGTKIVLHMKEDQA--EYIEEKKIKE 167 (224)
Q Consensus 93 iGqFGIGf~S~Fmvad~V~V~Tk~~~~~-~~~w~s~~~~~~~v~~~--~~~~~~~GT~I~L~Lk~~~~--e~~~~~~vk~ 167 (224)
-|.-|+|...+=.++++++|.+++.+.. ...|+..+. .+.+. .+....+||+|+..-..... .-++...|++
T Consensus 112 GGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~---~~~~l~~~~~~~~~GT~V~F~PD~~iF~~~~f~~d~l~~ 188 (637)
T TIGR01058 112 GGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGK---IVQSLKKIGTTKKTGTLVHFHPDPTIFKTTQFNSNIIKE 188 (637)
T ss_pred CCcccccccccceeeceEEEEEEECCEEEEEEEecCCc---CcCCcccccCCCCCceEEEEEeCHHHcCCCccCHHHHHH
Confidence 6899999999999999999999875421 123432111 11111 12334689999887654421 1145666777
Q ss_pred HHHHhcccc-ccceEEeee
Q psy15682 168 IVKKHSQFI-GYPIKLLVE 185 (224)
Q Consensus 168 likkys~~i-~~PI~v~~~ 185 (224)
-++..+-+. ..-|.++.+
T Consensus 189 RlrelA~Ln~GL~I~l~de 207 (637)
T TIGR01058 189 RLKESAFLLKKLKLTFTDK 207 (637)
T ss_pred HHHHHhccCCCcEEEEEec
Confidence 777776444 345555543
No 27
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.18 E-value=0.044 Score=56.54 Aligned_cols=155 Identities=23% Similarity=0.208 Sum_probs=86.2
Q ss_pred eEEEEecCcc-ccc---cccccCCcCCCCCcEEEEEeCCCCCCHHHHH--------HhhchhccccchhHHHHH------
Q psy15682 23 HIKIIPNKEE-KTL---TIIDSGFIPNKEEKTLTIIDSGIGMTKADLV--------NNLGTTAKSGTKASMEAL------ 84 (224)
Q Consensus 23 ~I~i~~n~~~-a~~---~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~--------~~l~tIg~Sg~~~f~~~~------ 84 (224)
.-+|+-|+.| |++ +.|++-+-. +..|+|+|||.||+-+.-. -.| |+..+|.+ |-...
T Consensus 134 v~EIlDNSVDE~laG~~~~I~V~i~~---DgsItV~DnGRGIPvd~h~k~g~s~~E~Vl-T~LhAGGK-F~~~~~~~~~~ 208 (903)
T PTZ00109 134 LFEILDNSVDEYLAGECNKITVVLHK---DGSVEISDNGRGIPCDVSEKTGKSGLETVL-TVLHSGGK-FQDTFPKNSRS 208 (903)
T ss_pred EEEEeeccchhhccCCCcEEEEEEcC---CCeEEEEeCCccccccccccCCCcceeEEE-EEeccCcc-ccCcccccccc
Confidence 3368888887 333 445444432 2689999999999874422 123 33344432 32110
Q ss_pred ---------------------------H-cC-CC-CCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEE
Q psy15682 85 ---------------------------Q-AG-AD-ISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTI 134 (224)
Q Consensus 85 ---------------------------~-~~-~~-~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v 134 (224)
. +. .. .-.-|.-|+|...+=.++..++|.+++.+. .|.-+.. +| ..+
T Consensus 209 ~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdGK-~y~q~F~-rG-~~v 285 (903)
T PTZ00109 209 DKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGGK-IYSIELS-KG-KVT 285 (903)
T ss_pred cccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECCE-EEEEEeC-CC-ccc
Confidence 0 00 01 136789999999999999999999998652 2322222 12 111
Q ss_pred eeCC--CCC-CCCCcEEEEEec-CChH-h-h--------------hcHHHHHHHHHHhcccc-ccceEEeee
Q psy15682 135 KPDN--SQP-LGRGTKIVLHMK-EDQA-E-Y--------------IEEKKIKEIVKKHSQFI-GYPIKLLVE 185 (224)
Q Consensus 135 ~~~~--~~~-~~~GT~I~L~Lk-~~~~-e-~--------------~~~~~vk~likkys~~i-~~PI~v~~~ 185 (224)
.+.. +.. ..+||+|+..-. +... . . ++...|++-++.++-+. ..-|.++.+
T Consensus 286 ~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~I~L~De 357 (903)
T PTZ00109 286 KPLSVFSCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLTFYLVDE 357 (903)
T ss_pred CCccccCCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHhccCCCcEEEEEec
Confidence 1211 222 358999988766 4421 1 1 24566777777776443 345555543
No 28
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.09 E-value=0.031 Score=55.49 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=69.2
Q ss_pred cEEEEEeCCCCCCHHHHHH--h---------hchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeC
Q psy15682 49 KTLTIIDSGIGMTKADLVN--N---------LGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHN 117 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~--~---------l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~ 117 (224)
..|+|+|||.||+-+.-.. . |+++ .+|.+ | . +.-.-.-|.-|+|...+=.++.+++|.++..
T Consensus 79 gsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~L-haGgk-F-d----~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~ 151 (602)
T PHA02569 79 NQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRT-KAGSN-F-D----DTNRVTGGMNGVGSSLTNFFSVLFIGETCDG 151 (602)
T ss_pred CEEEEEECCCcccCCcccccccccccceEEEEEee-ccccc-c-C----CcceeeCCcCCccceeeeccchhhheEEEcC
Confidence 7899999999998754321 0 3333 33332 4 1 1123457999999999999999999988653
Q ss_pred CCc-eeEEEeCCCCceEEeeC-CCCCCCCCcEEEEEecCChHhh--hc---HHHHHHHHHHhcccc-ccceEEeee
Q psy15682 118 DNE-QYIWESSAGGSFTIKPD-NSQPLGRGTKIVLHMKEDQAEY--IE---EKKIKEIVKKHSQFI-GYPIKLLVE 185 (224)
Q Consensus 118 ~~~-~~~w~s~~~~~~~v~~~-~~~~~~~GT~I~L~Lk~~~~e~--~~---~~~vk~likkys~~i-~~PI~v~~~ 185 (224)
+.. ...|.. | ....+. .+....+||+|+..-......- ++ ...|.+-++..+-.. ..-|.++.+
T Consensus 152 ~~~~~q~f~~---G-~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~de 223 (602)
T PHA02569 152 KNEVTVNCSN---G-AENISWSTKPGKGKGTSVTFIPDFSHFEVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNGK 223 (602)
T ss_pred CEEEEEEecC---C-cccCCcccCCCCCCccEEEEEECHHHhCCCccCccHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 321 123322 2 111111 1223468999987765432110 22 234444455544222 345555544
No 29
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=95.96 E-value=0.021 Score=40.09 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=37.5
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecC----eEEEEee
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVAD----KVTVTSK 115 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad----~V~V~Tk 115 (224)
..|.|.|+|.||+...+.+.+...+.. ......+.+|+|++.+-.+++ .+.+.+.
T Consensus 34 ~~v~i~d~g~g~~~~~~~~~~~~~~~~------------~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 34 LEIRVEDNGPGIPEEDLERIFERFSDG------------SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred EEEEEEeCCCCCCHHHHHHHhhhhhcC------------CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 789999999999999988766432100 112345678999988766665 5555443
No 30
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=95.91 E-value=0.016 Score=51.93 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=32.1
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA 107 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva 107 (224)
+++...|.|+|||+||+++++.+.|... .+. ...-+.+|+|++.+-.++
T Consensus 276 ~~~~~~i~V~D~G~Gi~~~~~~~if~~f----~~~----------~~~~~g~GlGL~i~~~i~ 324 (356)
T PRK10755 276 EDGGAVLAVEDEGPGIDESKCGELSKAF----VRM----------DSRYGGIGLGLSIVSRIT 324 (356)
T ss_pred cCCEEEEEEEECCCCCCHHHHHHhCCCe----EeC----------CCCCCCcCHHHHHHHHHH
Confidence 3344789999999999999998765321 110 012356899997654443
No 31
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=95.84 E-value=0.034 Score=59.81 Aligned_cols=129 Identities=15% Similarity=0.147 Sum_probs=72.3
Q ss_pred cEEEEEeCCCCCCHHHHH--------HhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCC-C
Q psy15682 49 KTLTIIDSGIGMTKADLV--------NNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHND-N 119 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~--------~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~-~ 119 (224)
..|+|+|||.||+-+.-. -.|+++-.||+ |- .....-.-|+-|+|...+=.++.+++|.+.+.. .
T Consensus 94 g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgk--fd----d~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~g 167 (1388)
T PTZ00108 94 GEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSN--YD----DTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSG 167 (1388)
T ss_pred CeEEEEecCCcccCCCCCCCCCccceEEEEEeecccc--CC----CCceeeecccccCCccccccccceEEEEEEECCCC
Confidence 789999999999864321 12555544443 41 112234679999999999999999999999862 2
Q ss_pred cee--EEEeCC--CCceEEeeCCCCCCCCCcEEEEEecCChHh--hhcHHH---HHHHHHHhccccc-cceEEeee
Q psy15682 120 EQY--IWESSA--GGSFTIKPDNSQPLGRGTKIVLHMKEDQAE--YIEEKK---IKEIVKKHSQFIG-YPIKLLVE 185 (224)
Q Consensus 120 ~~~--~w~s~~--~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e--~~~~~~---vk~likkys~~i~-~PI~v~~~ 185 (224)
..| .|.... ...-.+.. .....+||+|+..-...... -++... |++-++..+-..+ .-|+++++
T Consensus 168 k~y~q~f~~Gm~~~~~p~i~~--~~~~~~GT~VtF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 168 KKFKMTWTDNMSKKSEPRITS--YDGKKDYTKVTFYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred CEEEEEecCCCcCCCCCccCC--CCCCCCceEEEEEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 223 454321 11112221 11115899998765433211 134444 4444444443333 45555544
No 32
>PRK10604 sensor protein RstB; Provisional
Probab=95.72 E-value=0.021 Score=53.35 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeE
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSA 103 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~ 103 (224)
+++...|.|.|||.||+.+++.+.|....+.. .......|.+|+|+.-+
T Consensus 346 ~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~----------~~~~~~~~g~GLGL~iv 394 (433)
T PRK10604 346 DGNQACLIVEDDGPGIPPEERERVFEPFVRLD----------PSRDRATGGCGLGLAIV 394 (433)
T ss_pred ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC----------CCCCCCCCCccchHHHH
Confidence 44447899999999999999988664322211 01122346789999654
No 33
>PLN03128 DNA topoisomerase 2; Provisional
Probab=95.64 E-value=0.066 Score=56.75 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=69.7
Q ss_pred cEEEEEeCCCCCCHHHHH--------HhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCC-C
Q psy15682 49 KTLTIIDSGIGMTKADLV--------NNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHND-N 119 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~--------~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~-~ 119 (224)
..|+|+|||.||+-+.-. =.|+++-.||+ |- .+...-.-|+-|+|...+=.++.+++|.++... .
T Consensus 86 gsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgk--Fd----d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~g 159 (1135)
T PLN03128 86 NTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSN--FD----DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRG 159 (1135)
T ss_pred CeEEEEecCccccCCCCCCCCCccceEEEEeeccccc--cC----CccceeeccccCCCCeEEEeecCeEEEEEEECCCC
Confidence 899999999999875322 11444433443 41 112234679999999999999999999998332 2
Q ss_pred cee--EEEeCCC--CceEEeeCCCCCCCCCcEEEEEecCChH--hhhcHHHHHHH---HHHhccccc--cceEEeee
Q psy15682 120 EQY--IWESSAG--GSFTIKPDNSQPLGRGTKIVLHMKEDQA--EYIEEKKIKEI---VKKHSQFIG--YPIKLLVE 185 (224)
Q Consensus 120 ~~~--~w~s~~~--~~~~v~~~~~~~~~~GT~I~L~Lk~~~~--e~~~~~~vk~l---ikkys~~i~--~PI~v~~~ 185 (224)
..| .|...-. ..-.+.. .....+||+|+..-..... .-++.+.+..+ ++..+.|++ .-|+++.+
T Consensus 160 k~y~q~f~~G~~~~~~p~i~~--~~~~~~GT~ItF~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnde 234 (1135)
T PLN03128 160 KKYKQVFTNNMSVKSEPKITS--CKASENWTKITFKPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGK 234 (1135)
T ss_pred eEEEEEeCCCcccCCCceecc--CCCCCCceEEEEEECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 223 3432100 0111111 1123589999876543221 11344433333 333455663 45555544
No 34
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=95.41 E-value=0.039 Score=50.74 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=31.3
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeE
Q psy15682 46 KEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSA 103 (224)
Q Consensus 46 ~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~ 103 (224)
++...|+|.|||+||+.+.+...|....+. .. ......+.+|+|++-+
T Consensus 381 ~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~-~~---------~~~~~~~g~GlGL~iv 428 (461)
T PRK09470 381 KDGLTITVDDDGPGVPEEEREQIFRPFYRV-DE---------ARDRESGGTGLGLAIV 428 (461)
T ss_pred CCEEEEEEEECCCCCCHHHHHHhcCCCccC-Cc---------ccCCCCCCcchhHHHH
Confidence 334789999999999999988866432111 10 1113346789999654
No 35
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=95.36 E-value=0.034 Score=51.41 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=33.3
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
+++.-.|.|.|||.||+++++.+.|-...++ . +......|..|+|++-+-.+
T Consensus 381 ~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~-~---------~~~~~~~~g~GlGL~iv~~i 432 (466)
T PRK10549 381 RDKTLRLTFADSAPGVSDEQLQKLFERFYRT-E---------GSRNRASGGSGLGLAICLNI 432 (466)
T ss_pred cCCEEEEEEEecCCCcCHHHHHHhccCcccC-C---------CCcCCCCCCCcHHHHHHHHH
Confidence 3444789999999999999998766433211 1 11123456789999754433
No 36
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=95.36 E-value=0.032 Score=39.78 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=34.6
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCe
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADK 109 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~ 109 (224)
..|.|.|+|.||+...+...+.....+ . ......+++|+|+..+-.++++
T Consensus 38 ~~i~i~d~g~g~~~~~~~~~~~~~~~~-~----------~~~~~~~~~g~gl~~~~~~~~~ 87 (111)
T smart00387 38 LEITVEDNGPGIPPEDLEKIFEPFFRT-D----------GRSRKIGGTGLGLSIVKKLVEL 87 (111)
T ss_pred EEEEEEeCCCCCCHHHHHHHhcCeEEC-C----------CCCCCCCcccccHHHHHHHHHH
Confidence 889999999999999988766432211 1 0124457789999887655544
No 37
>KOG1979|consensus
Probab=95.23 E-value=0.042 Score=54.24 Aligned_cols=129 Identities=21% Similarity=0.284 Sum_probs=73.5
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccce--eeeEeeecCeEEEEeeeCCCcee
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVG--FYSAYMVADKVTVTSKHNDNEQY 122 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIG--f~S~Fmvad~V~V~Tk~~~~~~~ 122 (224)
+++-+.|.|.|||.|+-++||.-.--+...|--..| +.+ ..+..||.- .+|+..-.=+|+|.||..++. .
T Consensus 53 ~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kF-EDL------~~lsTyGFRGEALASiShVA~VtV~TK~~~~~-c 124 (694)
T KOG1979|consen 53 DGGLKLLQISDNGSGIRREDLPILCERFTTSKLTKF-EDL------FSLSTYGFRGEALASISHVAHVTVTTKTAEGK-C 124 (694)
T ss_pred cCCeEEEEEecCCCccchhhhHHHHHHhhhhhcchh-HHH------HhhhhcCccHHHHhhhhheeEEEEEEeecCce-e
Confidence 555688899999999999999854333333332334 222 223334321 345555567899999997654 4
Q ss_pred EEE-eCCCCceEEeeCCCCCCCCCcEEEEE-e--cCCh-H-hh---h-cHHHHHHHHHHhccc---cccceEE
Q psy15682 123 IWE-SSAGGSFTIKPDNSQPLGRGTKIVLH-M--KEDQ-A-EY---I-EEKKIKEIVKKHSQF---IGYPIKL 182 (224)
Q Consensus 123 ~w~-s~~~~~~~v~~~~~~~~~~GT~I~L~-L--k~~~-~-e~---~-~~~~vk~likkys~~---i~~PI~v 182 (224)
.|+ +..+|...-.+. +-....||.|++. | +-.. + .+ . +-.++-.++.+|+=| +.|-..-
T Consensus 125 ayrasY~DGkm~~~pK-pcAgk~GT~I~vedLFYN~~~Rrkal~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk 196 (694)
T KOG1979|consen 125 AYRASYRDGKMIATPK-PCAGKQGTIITVEDLFYNMPTRRKALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRK 196 (694)
T ss_pred eeEEEeeccccccCCC-CccCCCceEEEehHhhccCHHHHHHhcCcHHHHHHHHHHHHHHheeCCCcceEEee
Confidence 454 334555443332 2235789999984 2 2111 0 00 1 124677888888655 4454443
No 38
>PLN03237 DNA topoisomerase 2; Provisional
Probab=95.22 E-value=0.057 Score=58.28 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=72.7
Q ss_pred cEEEEEeCCCCCCHHHHH--------HhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCC-C
Q psy15682 49 KTLTIIDSGIGMTKADLV--------NNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHND-N 119 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~--------~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~-~ 119 (224)
..|+|+|||.||.-+.-. =.|+++-.||+ |- .+...-.-|+-|+|...+=.++.+++|.++... .
T Consensus 111 gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgk--Fd----d~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~g 184 (1465)
T PLN03237 111 NLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSN--YD----DNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQ 184 (1465)
T ss_pred CEEEEEecCccccCCCCCCCCCccceEEEEeeecccc--CC----CCcceeeccccccCccccccccCeeEEEEEECCCC
Confidence 889999999999865221 12444444443 41 112234679999999999999999999998422 1
Q ss_pred cee--EEEeC-CC-CceEEeeCCCCCCCCCcEEEEEecCChHh--hhcHHHHHHHHHHh---ccccc--cceEEeee
Q psy15682 120 EQY--IWESS-AG-GSFTIKPDNSQPLGRGTKIVLHMKEDQAE--YIEEKKIKEIVKKH---SQFIG--YPIKLLVE 185 (224)
Q Consensus 120 ~~~--~w~s~-~~-~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e--~~~~~~vk~likky---s~~i~--~PI~v~~~ 185 (224)
..| .|..+ +. ..-.+.. .....+||+|+..-...... -++.+.|..+.++. +.|++ .-|+++++
T Consensus 185 k~y~Q~f~~nmG~~~~p~i~~--~~~~~~GT~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~Lnde 259 (1465)
T PLN03237 185 KKYKQVFSNNMGKKSEPVITK--CKKSENWTKVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGK 259 (1465)
T ss_pred eEEEEEEeCCCCccCCceecc--CCCCCCceEEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEec
Confidence 223 46532 11 1111211 11236899997764432211 13555554443443 44663 55666654
No 39
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=94.55 E-value=0.043 Score=55.39 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=37.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee----ecCeEEEEeeeC
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM----VADKVTVTSKHN 117 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm----vad~V~V~Tk~~ 117 (224)
.-.|+|+|||+||+.+++.+.|-.. ... ....+..|+|+.-|-. .+-++.|.|...
T Consensus 544 ~~~i~V~D~G~Gi~~~~~~~if~~f-~~~-------------~~~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~ 603 (921)
T PRK15347 544 QLCFTVEDTGCGIDIQQQQQIFTPF-YQA-------------DTHSQGTGLGLTIASSLAKMMGGELTLFSTPG 603 (921)
T ss_pred EEEEEEEEcCCCCCHHHHHHHhcCc-ccC-------------CCCCCCCchHHHHHHHHHHHcCCEEEEEecCC
Confidence 3789999999999999988765321 110 1123568999977653 345677777653
No 40
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=94.53 E-value=0.06 Score=53.41 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
+++...|.|.|||.||+++.+.+.+..-+.+++ . +..|+|++.+-.+
T Consensus 608 ~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~-------------~--~G~GLGL~i~~~i 654 (679)
T TIGR02916 608 ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTK-------------G--AGMGIGVYECRQY 654 (679)
T ss_pred cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC-------------C--CCcchhHHHHHHH
Confidence 344578999999999999985554432222111 1 5679999776433
No 41
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=94.51 E-value=0.084 Score=48.92 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=32.4
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
+.+...|.|.|||+||+.+++.+.|-.... .. .......|..|+|++-|-.+
T Consensus 346 ~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~-~~---------~~~~~~~~G~GLGL~ivk~i 397 (430)
T PRK11006 346 VPQGAEFSVEDNGPGIAPEHIPRLTERFYR-VD---------KARSRQTGGSGLGLAIVKHA 397 (430)
T ss_pred cCCEEEEEEEEcCCCCCHHHHHHhccCccc-cc---------CCCCCCCCCCchHHHHHHHH
Confidence 334478999999999999999876532211 11 01112335679999765443
No 42
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=94.37 E-value=0.092 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=19.8
Q ss_pred CCcEEEEEeCCCCCCHHHHHHhh
Q psy15682 47 EEKTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 47 ~~~~L~I~DnGiGMt~~eL~~~l 69 (224)
+...|+|+|||.||+..++...|
T Consensus 399 ~~~~i~i~D~G~Gi~~~~~~~i~ 421 (475)
T PRK11100 399 EQVALSVEDQGPGIPDYALPRIF 421 (475)
T ss_pred CEEEEEEEECCCCCCHHHHHHHH
Confidence 34789999999999999988765
No 43
>KOG1978|consensus
Probab=94.27 E-value=0.049 Score=54.34 Aligned_cols=126 Identities=17% Similarity=0.301 Sum_probs=67.3
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceee----eEeeecCeEEEEeeeCC-C
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFY----SAYMVADKVTVTSKHND-N 119 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~----S~Fmvad~V~V~Tk~~~-~ 119 (224)
|.|-..|.|.|||.|++.-+... | .. +..+.. +..+. .+..-|=.||. |+.--=-.|.|.|++.+ .
T Consensus 46 dyG~d~IEV~DNG~GI~~~n~~~-l-~l-kh~TSK-i~~f~-----Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~ 116 (672)
T KOG1978|consen 46 DYGSDSIEVSDNGSGISATDFEG-L-AL-KHTTSK-IVSFA-----DLAVLFTLGFRGEALSSLCALGDVMISTRSHSAK 116 (672)
T ss_pred CCCcceEEEecCCCCCCccchhh-h-hh-hhhhhc-ccchh-----hhhhhhhhhhHHHHHHhhhhccceEEEEeeccCc
Confidence 56778999999999999887665 2 11 112211 11111 12222223332 32221144667777753 3
Q ss_pred ceeEEEeCCCCceEEeeCCCCCCCCCcEEEEE-ecCC----hHhhhc-----HHHHHHHHHHhcc---ccccceE
Q psy15682 120 EQYIWESSAGGSFTIKPDNSQPLGRGTKIVLH-MKED----QAEYIE-----EKKIKEIVKKHSQ---FIGYPIK 181 (224)
Q Consensus 120 ~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~-Lk~~----~~e~~~-----~~~vk~likkys~---~i~~PI~ 181 (224)
-+..|..+..|..+-.. .-...+||+|++. |=.. ..+|-. -..+..++..|+- .|.|+..
T Consensus 117 vgt~l~~Dh~G~I~~k~--~~ar~~GTTV~v~~LF~tLPVR~kef~r~~Kref~k~i~li~~y~li~~~ir~~~~ 189 (672)
T KOG1978|consen 117 VGTRLVYDHDGHIIQKK--PVARGRGTTVMVRQLFSTLPVRRKEFQRNIKRKFVKLISLIQAYALISTAIKFLVS 189 (672)
T ss_pred cceeEEEccCCceeeec--cccCCCCCEEEHhhhcccCCCchHHhhcchhhhhhhHHhhHHHHHhhcccceeeee
Confidence 46788888777665222 2345799999985 3222 122222 1244566777743 3455554
No 44
>PRK09303 adaptive-response sensory kinase; Validated
Probab=94.04 E-value=0.067 Score=49.26 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=31.3
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA 107 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva 107 (224)
...|.|.|||+||+.+++.+.|-...+ .. . ....+..|+|++-|..++
T Consensus 305 ~v~i~V~D~G~GI~~~~~~~iF~pf~~-~~----------~-~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 305 KVQVSICDTGPGIPEEEQERIFEDRVR-LP----------R-DEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred EEEEEEEEcCCCCCHHHHHHHccCcee-CC----------C-CCCCCcccccHHHHHHHH
Confidence 367999999999999998876532111 00 0 122356899997665443
No 45
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=93.76 E-value=0.12 Score=52.33 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee----cCeEEEEeeeC
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV----ADKVTVTSKHN 117 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv----ad~V~V~Tk~~ 117 (224)
+++...|.|.|||+||+.+++.+.|-.... . ....|..|+|+.-|-.+ +-++.|.|...
T Consensus 589 ~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~-~-------------~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 589 DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQ-V-------------SGKRGGTGLGLTISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred cCCEEEEEEEECCCCCCHHHHHHHhchhhc-C-------------CCCCCCCcccHHHHHHHHHHcCCEEEEEecCC
Confidence 334478999999999999999876632111 0 11236789998876443 45678877654
No 46
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=93.57 E-value=0.14 Score=46.87 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=30.2
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeE
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSA 103 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~ 103 (224)
..|+|.|||.||+...+...|-...++... .....+..|+|++-+
T Consensus 386 ~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~----------~~~~~~g~GlGL~i~ 430 (457)
T TIGR01386 386 VRVSVSNPGPGIPPEHLSRLFDRFYRVDPA----------RSNSGEGTGLGLAIV 430 (457)
T ss_pred EEEEEEeCCCCCCHHHHHHhccccccCCcc----------cCCCCCCccccHHHH
Confidence 789999999999999988766443222110 112345688998664
No 47
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=93.38 E-value=0.21 Score=43.08 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=30.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
...|.|.|||.||+.+.+...|...... .. ......+..|+|++.|-.+
T Consensus 261 ~~~i~i~d~G~gi~~~~~~~if~~~~~~-~~---------~~~~~~~g~glGL~~~~~~ 309 (333)
T TIGR02966 261 GAEFSVTDTGIGIAPEHLPRLTERFYRV-DK---------SRSRDTGGTGLGLAIVKHV 309 (333)
T ss_pred EEEEEEEecCCCCCHHHHhhhccCceec-Cc---------ccccCCCCCcccHHHHHHH
Confidence 3789999999999999988765332111 10 0011234568999775443
No 48
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.27 E-value=0.54 Score=48.88 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=40.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee----ecCeEEEEeeeCCCceeE
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM----VADKVTVTSKHNDNEQYI 123 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm----vad~V~V~Tk~~~~~~~~ 123 (224)
.-.|.|.|||+||+.+++.+-|-.... .+ .....-+..|+|+.-|-- .+-++.|.|....+..+.
T Consensus 599 ~l~I~V~DtG~GI~~e~l~~IFePF~t-~~----------~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~ 667 (894)
T PRK10618 599 RLTIRILDTGAGVSIKELDNLHFPFLN-QT----------QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYS 667 (894)
T ss_pred EEEEEEEECCCCCCHHHHHHhcCcccc-CC----------CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEE
Confidence 368999999999999999876532211 11 111122457999877643 356788887764333333
No 49
>PRK03660 anti-sigma F factor; Provisional
Probab=93.13 E-value=0.22 Score=39.16 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.7
Q ss_pred cEEEEEeCCCCCCH
Q psy15682 49 KTLTIIDSGIGMTK 62 (224)
Q Consensus 49 ~~L~I~DnGiGMt~ 62 (224)
-.|+|.|+|.||+.
T Consensus 75 l~i~I~D~G~g~~~ 88 (146)
T PRK03660 75 LEITVRDEGKGIED 88 (146)
T ss_pred EEEEEEEccCCCCh
Confidence 78999999999985
No 50
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=93.13 E-value=0.21 Score=45.66 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.4
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhc
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLG 70 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~ 70 (224)
+++...|+|.|||+||+.+.+...|-
T Consensus 420 ~~~~~~~~V~D~G~Gi~~~~~~~iF~ 445 (494)
T TIGR02938 420 NGDLIVVSILDSGPGIPQDLRYKVFE 445 (494)
T ss_pred cCCEEEEEEEeCCCCCCHHHHHHhcC
Confidence 44558899999999999988887663
No 51
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=92.94 E-value=0.18 Score=47.92 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=30.8
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
...|.|.|||.||+..++.+.|-. +.+.+ ....|.-|+|++.+.-+
T Consensus 468 ~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk------------~~~~~g~GlGL~ivk~i 513 (545)
T PRK15053 468 DVVIEVADQGCGVPESLRDKIFEQ-GVSTR------------ADEPGEHGIGLYLIASY 513 (545)
T ss_pred EEEEEEEeCCCCcCHHHHHHHhCC-CCCCC------------CCCCCCceeCHHHHHHH
Confidence 378999999999999998876643 22211 11124569999776444
No 52
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=92.86 E-value=0.1 Score=47.81 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.8
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhc
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLG 70 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~ 70 (224)
...|+|.|||.||+.+++...|.
T Consensus 361 ~~~i~V~D~G~Gi~~~~~~~~~~ 383 (435)
T PRK09467 361 RAWFQVEDDGPGIPPEQLKHLFQ 383 (435)
T ss_pred EEEEEEEecCCCcCHHHHHHhcC
Confidence 36899999999999999887663
No 53
>PRK10364 sensor protein ZraS; Provisional
Probab=92.66 E-value=0.26 Score=45.96 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=20.9
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhh
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l 69 (224)
+++...|.|.|||.||+.+.+.+.|
T Consensus 377 ~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 377 SGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred eCCeEEEEEEECCCCCCHHHHHHHh
Confidence 4444889999999999999988765
No 54
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=92.50 E-value=0.28 Score=49.12 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=39.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee----cCeEEEEeeeC
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV----ADKVTVTSKHN 117 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv----ad~V~V~Tk~~ 117 (224)
...|.|.|||+||+.+++.+.|-..... + ........+.-|+|+..|-.+ +-++.|.|...
T Consensus 430 ~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-~--------~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 430 MLTFEVEDSGIGIPEDELDKIFAMYYQV-K--------DSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred EEEEEEEecCCCCCHHHHHHHHHHhhcc-c--------CCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCC
Confidence 3789999999999999988766432111 0 011223346678888776543 46788877654
No 55
>PRK10815 sensor protein PhoQ; Provisional
Probab=92.47 E-value=0.12 Score=49.48 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=20.6
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhh
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l 69 (224)
+++...|+|.|||.||+.+++...|
T Consensus 405 ~~~~v~I~V~D~G~GI~~e~~~~iF 429 (485)
T PRK10815 405 TDEHLHIVVEDDGPGIPESKRELIF 429 (485)
T ss_pred eCCEEEEEEEECCCCcCHHHHHHHh
Confidence 3444689999999999999988765
No 56
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=92.40 E-value=0.58 Score=48.60 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=38.4
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee----cCeEEEEeee
Q psy15682 46 KEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV----ADKVTVTSKH 116 (224)
Q Consensus 46 ~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv----ad~V~V~Tk~ 116 (224)
++...|.|.|||+||+.+++.+.|-....... ......+..|+|+.-|-.+ +-++.|.|..
T Consensus 591 ~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~----------~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 591 GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT----------GVQRNFQGTGLGLAICEKLINMMDGDISVDSEP 655 (924)
T ss_pred CCEEEEEEEEcCcCCCHHHHHHHhcccccCCC----------CCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcC
Confidence 33467999999999999998876532211100 1112235689999877544 3567777654
No 57
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=92.13 E-value=0.32 Score=37.92 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=12.2
Q ss_pred cEEEEEeCCCCCC
Q psy15682 49 KTLTIIDSGIGMT 61 (224)
Q Consensus 49 ~~L~I~DnGiGMt 61 (224)
..|.|.|+|.||+
T Consensus 75 ~~i~I~D~G~gi~ 87 (137)
T TIGR01925 75 VYITVRDEGIGIE 87 (137)
T ss_pred EEEEEEEcCCCcC
Confidence 7899999999997
No 58
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=91.70 E-value=0.25 Score=49.87 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=38.1
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee----cCeEEEEeeeC
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV----ADKVTVTSKHN 117 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv----ad~V~V~Tk~~ 117 (224)
-.|.|.|||+||+++++.+.|-..... . .......|..|+|++-|-.+ +-++.|.|...
T Consensus 445 ~~i~V~D~G~Gi~~~~~~~if~~f~~~-~---------~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 445 LEVQIRDTGIGISERQQSQLFQAFRQA-D---------ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred EEEEEEEeCCCcCHHHHHHHhhhhccC-C---------CCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCC
Confidence 468999999999999988765322111 0 01112346789999876543 45677776654
No 59
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=91.51 E-value=0.45 Score=48.41 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee----cCeEEEEeeeC
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV----ADKVTVTSKHN 117 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv----ad~V~V~Tk~~ 117 (224)
+++...|.|.|||+||+.+++...|-.. .+ .+ . +..|+|++.|-.+ +-++.|.|...
T Consensus 604 ~~~~v~i~V~D~G~GI~~e~~~~iFe~F-~~------------~~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 604 PGRYVLLRVSDTGAGIDEAVLPHIFEPF-FT------------TR-A--GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHhhCCc-cc------------CC-C--CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 3445689999999999999988755321 11 01 1 6789999877543 46788877653
No 60
>PRK10490 sensor protein KdpD; Provisional
Probab=91.50 E-value=0.32 Score=50.38 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM 105 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm 105 (224)
+++...|.|.|||.||+.+++.+.|-.. .++. .....+..|+|++-|-.
T Consensus 807 ~~~~v~I~V~D~G~GI~~e~~~~IFepF-~~~~-----------~~~~~~G~GLGL~Ivk~ 855 (895)
T PRK10490 807 EGERLQLDVWDNGPGIPPGQEQLIFDKF-ARGN-----------KESAIPGVGLGLAICRA 855 (895)
T ss_pred eCCEEEEEEEECCCCCCHHHHHHhcCCC-ccCC-----------CCCCCCCccHHHHHHHH
Confidence 3344789999999999999988765331 1111 11223458899876533
No 61
>KOG1977|consensus
Probab=91.49 E-value=0.1 Score=52.86 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=48.7
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCc-eeE--EE
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE-QYI--WE 125 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~-~~~--w~ 125 (224)
..+.|.|||+||++++|.. ||+=-..++=.|++.+. ....-|--|=-+.|.-=++ -++|+|+..+.. +|. -.
T Consensus 50 ~sv~ViDdG~G~~rdDl~~-lg~ry~TSK~h~~ndl~---~~~tyGfRGeALasIsd~s-~l~v~skkk~r~~~~~~kk~ 124 (1142)
T KOG1977|consen 50 FSVQVIDDGFGMGRDDLEK-LGNRYFTSKCHSVNDLE---NPRTYGFRGEALASISDMS-SLVVISKKKNRTMKTFVKKF 124 (1142)
T ss_pred eEEEEEecCCCccHHHHHH-HHhhhhhhhceeccccc---cccccccchhhhhhhhhhh-hhhhhhhhcCCchhHHHHHH
Confidence 8899999999999999985 43321112211222111 1222333333333322222 356777765422 222 11
Q ss_pred eCCCCceEEeeCCCCCCCCCcEEEEE
Q psy15682 126 SSAGGSFTIKPDNSQPLGRGTKIVLH 151 (224)
Q Consensus 126 s~~~~~~~v~~~~~~~~~~GT~I~L~ 151 (224)
..+...-.+.. ...+...||+|+++
T Consensus 125 ~~gs~~~~l~i-D~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 125 QSGSALKALEI-DVTRASSGTTVTVY 149 (1142)
T ss_pred hccccceeccc-ccccccCCcEEEeH
Confidence 12222223333 24567899999996
No 62
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=91.06 E-value=0.48 Score=44.47 Aligned_cols=26 Identities=12% Similarity=0.168 Sum_probs=21.2
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhc
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLG 70 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~ 70 (224)
+++...|.|.|||.||+.+++.+.|-
T Consensus 464 ~~~~~~i~V~D~G~gi~~~~~~~iF~ 489 (542)
T PRK11086 464 RNGWLHCEVSDDGPGIAPDEIDAIFD 489 (542)
T ss_pred cCCEEEEEEEECCCCCCHHHHHHHHh
Confidence 33447899999999999999987663
No 63
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=90.94 E-value=0.29 Score=49.25 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec
Q psy15682 47 EEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA 107 (224)
Q Consensus 47 ~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva 107 (224)
+...|.|.|||.||+.+++...|-... +.+. ......+..|+|++-|-.++
T Consensus 628 ~~v~I~V~D~G~GI~~e~~~~IFe~F~-t~~~---------~~~~~~~g~GLGL~Ivr~Iv 678 (703)
T TIGR03785 628 SHALLTVSNEGPPLPEDMGEQLFDSMV-SVRD---------QGAQDQPHLGLGLYIVRLIA 678 (703)
T ss_pred CEEEEEEEEcCCCCCHHHHHHHhCCCe-ecCC---------CCCCCCCCccHHHHHHHHHH
Confidence 347899999999999999987664321 1110 11122246899998764443
No 64
>PRK09835 sensor kinase CusS; Provisional
Probab=90.61 E-value=0.44 Score=44.08 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.8
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhc
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLG 70 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~ 70 (224)
...|.|.|||.||+.+++...|-
T Consensus 407 ~~~i~v~d~G~gi~~~~~~~if~ 429 (482)
T PRK09835 407 QVQLVVENPGTPIAPEHLPRLFD 429 (482)
T ss_pred EEEEEEEECCCCcCHHHHHHHhC
Confidence 37899999999999999987653
No 65
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=90.39 E-value=0.35 Score=49.24 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=37.6
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee----cCeEEEEeeeC
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV----ADKVTVTSKHN 117 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv----ad~V~V~Tk~~ 117 (224)
..|.|.|||+||+.+++...|-..... ......|..|+|++-|-.+ +-++.|.|...
T Consensus 612 ~~i~V~D~G~Gi~~~~~~~if~~f~~~------------~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 612 LLFEVEDTGCGIAEEEQATLFDAFTQA------------DGRRRSGGTGLGLAISQRLVEAMDGELGVESELG 672 (968)
T ss_pred EEEEEEeCCCCCCHHHHHHHHhhhhcc------------CCCCCCCCccHHHHHHHHHHHHcCCEEEEEecCC
Confidence 789999999999999988766321111 1122336788998776443 35677776543
No 66
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=90.33 E-value=0.6 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCCCHHHHHHhh
Q psy15682 49 KTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l 69 (224)
..|.|+|||+||+.+.+...|
T Consensus 534 ~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 534 VAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred EEEEEEeCCCCCCHHHHhhhc
Confidence 789999999999999988755
No 67
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=89.68 E-value=0.45 Score=46.69 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=30.3
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeE
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSA 103 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~ 103 (224)
.-.|.|.|||+||+++.....| ..|.|.+. .+.-|+|+|-+
T Consensus 462 ~lvieV~D~G~GI~~~~~~~iF-e~G~Stk~--------------~~~rGiGL~Lv 502 (537)
T COG3290 462 ELVIEVADTGPGIPPEVRDKIF-EKGVSTKN--------------TGGRGIGLYLV 502 (537)
T ss_pred EEEEEEeCCCCCCChHHHHHHH-hcCccccC--------------CCCCchhHHHH
Confidence 3889999999999999888654 44554331 47778998754
No 68
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=89.03 E-value=0.28 Score=40.17 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEe
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTS 114 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~T 114 (224)
-.|.|+|+|.||+...+...+.- .... ........-|+|++-+-.++|++.+.+
T Consensus 78 l~i~V~D~G~g~d~~~~~~~~~p---~~~~---------~~~~~~~~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 78 LEIVVADNGVSFDYETLKSKLGP---YDIS---------KPIEDLREGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred EEEEEEECCcCCChHHhccccCC---CCCC---------CcccccCCCceeHHHHHHHHHhEEEEc
Confidence 89999999999998776554310 0000 000111123778777766778777653
No 69
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=87.95 E-value=0.51 Score=38.67 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=34.2
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEe
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTS 114 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~T 114 (224)
-.|.|+|+|.||+...+...+.. .... ........-|.|++-+=.++|.+.+.+
T Consensus 78 l~i~V~D~G~gfd~~~~~~~~~~---~~~~---------~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 78 LEIIVSDQGDSFDMDTFKQSLGP---YDGS---------EPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred EEEEEEEcccccCchhhccccCC---CCCC---------CCcccCCCCccCHHHHHHhccEEEEEe
Confidence 78899999999997776643321 0000 001111234888888888899888864
No 70
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=87.48 E-value=0.85 Score=38.43 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=18.9
Q ss_pred CcEEEEEeCCCCCCHHHHHHhh
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l 69 (224)
...|.|.|||.||+++.+...|
T Consensus 259 ~i~i~V~D~G~Gi~~~~~~~if 280 (336)
T COG0642 259 QVTISVEDTGPGIPEEELERIF 280 (336)
T ss_pred eEEEEEEcCCCCCCHHHHHHhc
Confidence 3789999999999999977654
No 71
>PRK10337 sensor protein QseC; Provisional
Probab=86.01 E-value=0.75 Score=42.38 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCCHHHHHHhhc
Q psy15682 50 TLTIIDSGIGMTKADLVNNLG 70 (224)
Q Consensus 50 ~L~I~DnGiGMt~~eL~~~l~ 70 (224)
.|.|.|||.||+++++...|-
T Consensus 382 ~i~i~D~G~Gi~~~~~~~if~ 402 (449)
T PRK10337 382 NFTVRDNGPGVTPEALARIGE 402 (449)
T ss_pred EEEEEECCCCCCHHHHHHhcc
Confidence 689999999999999988663
No 72
>PRK13557 histidine kinase; Provisional
Probab=85.90 E-value=1.1 Score=41.89 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=37.3
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee----ecCeEEEEeeeC
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM----VADKVTVTSKHN 117 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm----vad~V~V~Tk~~ 117 (224)
..+|.|.|||+||+.+.+...|... .+. ....+..|+|++.+-. .+-++.|.|...
T Consensus 324 ~~~i~v~D~G~Gi~~~~~~~if~~~-~~~-------------~~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 324 YVSIAVTDTGSGMPPEILARVMDPF-FTT-------------KEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred EEEEEEEcCCCCCCHHHHHhccCCC-ccc-------------CCCCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 3579999999999999988765321 111 1123567899876532 457788877654
No 73
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=84.11 E-value=0.81 Score=41.79 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=28.9
Q ss_pred hhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHH
Q psy15682 8 ESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADL 65 (224)
Q Consensus 8 ~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL 65 (224)
++|||--.-....++.|++..+... -+|+|.|||.|.+.+..
T Consensus 286 EaltN~~rHa~A~~v~V~l~~~~~~----------------l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 286 EALTNAIRHAQATEVRVTLERTDDE----------------LRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHhccCCceEEEEEEEcCCE----------------EEEEEEECCcCCCcccc
Confidence 4455544444455666666666666 99999999999887554
No 74
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=83.29 E-value=2.8 Score=43.31 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=38.5
Q ss_pred cceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCcccee
Q psy15682 21 NLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGF 100 (224)
Q Consensus 21 ~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf 100 (224)
++.|....+.++ -.+.|+|||-|++..++.+.|-+..+.++ .+...--|+|+
T Consensus 796 ~I~I~~~~~~~~----------------v~~~V~DeGpGIP~~~~~~IFD~F~r~~~------------~~~~~G~GLGL 847 (890)
T COG2205 796 EIRINAGVEREN----------------VVFSVIDEGPGIPEGELERIFDKFYRGNK------------ESATRGVGLGL 847 (890)
T ss_pred eEEEEEEEecce----------------EEEEEEeCCCCCChhHHHHhhhhhhcCCC------------CCCCCCccccH
Confidence 455556666666 89999999999999999998865433222 12245567777
Q ss_pred eeE
Q psy15682 101 YSA 103 (224)
Q Consensus 101 ~S~ 103 (224)
+-|
T Consensus 848 sIc 850 (890)
T COG2205 848 AIC 850 (890)
T ss_pred HHH
Confidence 665
No 75
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=82.51 E-value=2.1 Score=43.11 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=41.9
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec----CeEEEEeeeCCCc
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA----DKVTVTSKHNDNE 120 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva----d~V~V~Tk~~~~~ 120 (224)
.....++.|.|||+|++.+-+.+-|.-.-+-++ .....| -|+|+.-|--++ -++-|.|+.....
T Consensus 666 ~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s-----------~~~y~g-tG~GL~I~kkI~e~H~G~i~vEs~~gEgs 733 (750)
T COG4251 666 QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS-----------RDEYLG-TGLGLAICKKIAERHQGRIWVESTPGEGS 733 (750)
T ss_pred cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCc-----------hhhhcC-CCccHHHHHHHHHHhCceEEEeecCCCce
Confidence 344599999999999999998887643211112 122334 899997775554 4566666643333
Q ss_pred eeE
Q psy15682 121 QYI 123 (224)
Q Consensus 121 ~~~ 123 (224)
.+.
T Consensus 734 TF~ 736 (750)
T COG4251 734 TFY 736 (750)
T ss_pred eEE
Confidence 333
No 76
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=81.85 E-value=1.6 Score=45.78 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=36.5
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee----cCeEEEEeeeC
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV----ADKVTVTSKHN 117 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv----ad~V~V~Tk~~ 117 (224)
..|.|.|||+||+.+++.+.|-... ..+ .....+..|+|++-|-.+ +-++.|.|...
T Consensus 865 ~~i~V~D~G~Gi~~~~~~~iF~~f~-~~~-----------~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 865 IKMTIMDSGSGLSQEEQQQLFKRYS-QTS-----------AGRQQTGSGLGLMICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred EEEEEEEcCCCCCHHHHHHhhcccc-ccc-----------cCCCCCCcCchHHHHHHHHHHcCCEEEEEeCCC
Confidence 4589999999999999887653221 111 011235689999876443 45677776653
No 77
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=81.07 E-value=1.7 Score=38.48 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.7
Q ss_pred cEEEEEeCCCCCCHHHHHHhh
Q psy15682 49 KTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l 69 (224)
..|.|.|||.||+.+.+...|
T Consensus 281 ~~i~v~D~G~Gi~~~~~~~iF 301 (348)
T PRK11073 281 ARIDIEDNGPGIPPHLQDTLF 301 (348)
T ss_pred EEEEEEeCCCCCCHHHHhhcc
Confidence 368999999999999887654
No 78
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=79.74 E-value=1.1 Score=44.03 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.5
Q ss_pred CCcEEEEEeCCCCCCHH
Q psy15682 47 EEKTLTIIDSGIGMTKA 63 (224)
Q Consensus 47 ~~~~L~I~DnGiGMt~~ 63 (224)
+..+++|+|||+|++..
T Consensus 511 g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 511 GQVTLTVEDNGVGIDEA 527 (574)
T ss_pred CeEEEEEeeCCcCCCCc
Confidence 34999999999998764
No 79
>PRK10547 chemotaxis protein CheA; Provisional
Probab=78.58 E-value=7 Score=39.60 Aligned_cols=19 Identities=16% Similarity=0.531 Sum_probs=16.8
Q ss_pred cEEEEEeCCCCCCHHHHHH
Q psy15682 49 KTLTIIDSGIGMTKADLVN 67 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~ 67 (224)
..|.|.|+|.||+.+.+..
T Consensus 430 v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 430 ICIEVTDDGAGLNRERILA 448 (670)
T ss_pred EEEEEEeCCCCCCHHHHHH
Confidence 7899999999999988764
No 80
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=75.61 E-value=3.5 Score=41.13 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=32.2
Q ss_pred EEEEecCccccc----cccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhh
Q psy15682 24 IKIIPNKEEKTL----TIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 24 I~i~~n~~~a~~----~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l 69 (224)
|.+++|+-||+. ..|.+-...+++...|+|+|||.|+..+.+...|
T Consensus 503 vNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lF 552 (603)
T COG4191 503 VNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLF 552 (603)
T ss_pred HHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhc
Confidence 345566666654 3444444445566999999999999999988765
No 81
>KOG1845|consensus
Probab=75.42 E-value=2.4 Score=43.52 Aligned_cols=52 Identities=23% Similarity=0.479 Sum_probs=38.8
Q ss_pred EEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee-ecCeEEEEeeeC
Q psy15682 51 LTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM-VADKVTVTSKHN 117 (224)
Q Consensus 51 L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm-vad~V~V~Tk~~ 117 (224)
|...|+|+||+.+++....- | ......+|++|=|+.|.-| ++..+.+.|+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~ 54 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKE 54 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------cccccccccccCcccccccccCcccceeeccc
Confidence 56789999999999887541 1 1234678999999888655 787777777754
No 82
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=75.30 E-value=5.4 Score=30.30 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=40.3
Q ss_pred CcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccce
Q psy15682 20 KNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVG 99 (224)
Q Consensus 20 ~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIG 99 (224)
..+.|++..+... -.|.|.|+|.|++...+...... .......=|.|
T Consensus 54 ~~v~v~~~~~~~~----------------l~i~v~D~G~~~d~~~~~~~~~~-----------------~~~~~~~~G~G 100 (125)
T PF13581_consen 54 GPVDVRLEVDPDR----------------LRISVRDNGPGFDPEQLPQPDPW-----------------EPDSLREGGRG 100 (125)
T ss_pred cEEEEEEEEcCCE----------------EEEEEEECCCCCChhhccCcccc-----------------cCCCCCCCCcC
Confidence 3455666666666 89999999999988765543210 01233445677
Q ss_pred eeeEeeecCeEEE
Q psy15682 100 FYSAYMVADKVTV 112 (224)
Q Consensus 100 f~S~Fmvad~V~V 112 (224)
++-+-.++|++.+
T Consensus 101 l~li~~l~D~~~~ 113 (125)
T PF13581_consen 101 LFLIRSLMDEVDY 113 (125)
T ss_pred HHHHHHHHcEEEE
Confidence 7777778899988
No 83
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=74.68 E-value=1.7 Score=41.99 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=14.8
Q ss_pred CCCcEEEEEeCCCCCCHH
Q psy15682 46 KEEKTLTIIDSGIGMTKA 63 (224)
Q Consensus 46 ~~~~~L~I~DnGiGMt~~ 63 (224)
++...|+|.|||+||+.+
T Consensus 498 ~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 498 QNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred CCEEEEEEEECCCCCCcc
Confidence 344789999999999974
No 84
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=71.45 E-value=1 Score=43.29 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=14.4
Q ss_pred CCCcEEEEEeCCCCCCHH
Q psy15682 46 KEEKTLTIIDSGIGMTKA 63 (224)
Q Consensus 46 ~~~~~L~I~DnGiGMt~~ 63 (224)
++.-.|+|+|||+||+.+
T Consensus 439 ~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 439 DERLMLVIEDDGSGLPPG 456 (495)
T ss_pred CCEEEEEEEECCCCCCcC
Confidence 334789999999999854
No 85
>PRK13560 hypothetical protein; Provisional
Probab=69.77 E-value=4 Score=40.12 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.4
Q ss_pred CCcEEEEEeCCCCCCHH
Q psy15682 47 EEKTLTIIDSGIGMTKA 63 (224)
Q Consensus 47 ~~~~L~I~DnGiGMt~~ 63 (224)
+...|.|.|||+||+.+
T Consensus 746 ~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 746 GMVNLCVADDGIGLPAG 762 (807)
T ss_pred CEEEEEEEeCCCcCCcc
Confidence 34689999999999975
No 86
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=68.84 E-value=19 Score=34.20 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.3
Q ss_pred CCcEEEEEeCCCCCCHHHHHHh
Q psy15682 47 EEKTLTIIDSGIGMTKADLVNN 68 (224)
Q Consensus 47 ~~~~L~I~DnGiGMt~~eL~~~ 68 (224)
..-.+.|.|||+||++..+...
T Consensus 385 ~~i~i~i~Dng~g~~~~~~~~~ 406 (456)
T COG2972 385 DVIQISISDNGPGIDEEKLEGL 406 (456)
T ss_pred CEEEEEEeeCCCCCChhHHHHH
Confidence 4478999999999999887763
No 87
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=67.46 E-value=3.5 Score=38.88 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=16.3
Q ss_pred CcEEEEEeCCCCCCHHHHHH
Q psy15682 48 EKTLTIIDSGIGMTKADLVN 67 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~ 67 (224)
.-+++|+|||.|++...+..
T Consensus 390 ~vql~vrDnG~GF~~~~~~~ 409 (459)
T COG4564 390 MVQLMVRDNGVGFSVKEALQ 409 (459)
T ss_pred ceEEEEecCCCCccchhhcc
Confidence 38999999999988766544
No 88
>KOG1845|consensus
Probab=66.75 E-value=3.8 Score=42.11 Aligned_cols=54 Identities=30% Similarity=0.422 Sum_probs=40.5
Q ss_pred EEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee-ecCeEEEEeee
Q psy15682 53 IIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM-VADKVTVTSKH 116 (224)
Q Consensus 53 I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm-vad~V~V~Tk~ 116 (224)
+.|+|.||..+-+...+.. +.+.+.++ ..-+||+|.||..+.| ++-.+.|.+|.
T Consensus 192 ~s~~gg~~~~~~i~~~m~l-~~~~k~e~---------~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 192 ISDDGGGMKPEVIRKCMSL-GYSSKKEA---------NSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred eeccccccCHHHHHHHHHh-hhhhhhhh---------hhhhhhhccccccchhhhccceeEeehh
Confidence 4578999999999888743 33433321 3578999999999888 88888888883
No 89
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=63.43 E-value=14 Score=30.06 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=38.9
Q ss_pred CcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCC---c
Q psy15682 20 KNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQ---F 96 (224)
Q Consensus 20 ~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGq---F 96 (224)
..+.|+....... -.++|+|.|.|+. ++...+.-- ..+.+. -
T Consensus 64 g~I~i~~~~~~~~----------------~~i~i~D~G~~~~--~~~~~~~~~-----------------~~~~~~~~~~ 108 (146)
T COG2172 64 GEIRIEVSLDDGK----------------LEIRIWDQGPGIE--DLEESLGPG-----------------DTTAEGLQEG 108 (146)
T ss_pred ceEEEEEEEcCCe----------------EEEEEEeCCCCCC--CHHHhcCCC-----------------CCCCcccccc
Confidence 4566666666666 8999999996644 455554321 122223 3
Q ss_pred cceeeeEeeecCeEEEEeee
Q psy15682 97 GVGFYSAYMVADKVTVTSKH 116 (224)
Q Consensus 97 GIGf~S~Fmvad~V~V~Tk~ 116 (224)
|.||+-+=.+.|+|.+....
T Consensus 109 G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 109 GLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred cccHHHHhhhheeEEEEecc
Confidence 77777776678888887444
No 90
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=63.40 E-value=7.9 Score=36.83 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=49.7
Q ss_pred CCCCcceEEEEecCcccccccccc---CCcCCCC-----------CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHH
Q psy15682 17 ESEKNLHIKIIPNKEEKTLTIIDS---GFIPNKE-----------EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASME 82 (224)
Q Consensus 17 ~~~~~~~I~i~~n~~~a~~~~i~~---~~~~d~~-----------~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~ 82 (224)
++...++|+|-+|+-..|+.||=+ .|+|+++ .-.|.|.|+|+|+++.++.+.|-+.-+--
T Consensus 329 ~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvd------ 402 (459)
T COG5002 329 IPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVD------ 402 (459)
T ss_pred CCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhh------
Confidence 456677888888777666543322 5565443 25678999999999999998875432211
Q ss_pred HHHcCCCCCccCCccceee
Q psy15682 83 ALQAGADISMIGQFGVGFY 101 (224)
Q Consensus 83 ~~~~~~~~~~iGqFGIGf~ 101 (224)
.+.....|--|+|+.
T Consensus 403 ----kARsR~~gGTGLGLa 417 (459)
T COG5002 403 ----KARSRKMGGTGLGLA 417 (459)
T ss_pred ----hhhhhcCCCCchhHH
Confidence 122356788899984
No 91
>KOG0355|consensus
Probab=62.70 E-value=14 Score=38.21 Aligned_cols=124 Identities=16% Similarity=0.217 Sum_probs=61.1
Q ss_pred chhhhhhccCCCCcCCCCcc-eEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHH--------hhchhc
Q psy15682 3 DKIRYESLTDPSRLESEKNL-HIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVN--------NLGTTA 73 (224)
Q Consensus 3 dk~r~~~~~~~~~~~~~~~~-~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~--------~l~tIg 73 (224)
.|+-.+.|-|..=...++.. .|.+..++++ ..+.|.+||-|+.-..... .|+.+.
T Consensus 55 ~ki~dEilvNaadk~rd~~m~~i~v~i~~e~----------------~~isv~nnGkGIPv~~H~~ek~yvpelifg~Ll 118 (842)
T KOG0355|consen 55 YKIFDEILVNAADKQRDPKMNTIKVTIDKEK----------------NEISVYNNGKGIPVTIHKVEKVYVPELIFGNLL 118 (842)
T ss_pred HHHHHHHhhcccccccCCCcceeEEEEccCC----------------CEEEEEeCCCcceeeecccccccchHHHHhhhh
Confidence 34444444443211223333 4456666666 9999999999987544322 255555
Q ss_pred cccchhHHHHHHcCCCCCc--cCCccceeeeEeeecCeEEEEeeeCCCc-eeEEEeCC--CCceEEeeCCCCCCCCCcEE
Q psy15682 74 KSGTKASMEALQAGADISM--IGQFGVGFYSAYMVADKVTVTSKHNDNE-QYIWESSA--GGSFTIKPDNSQPLGRGTKI 148 (224)
Q Consensus 74 ~Sg~~~f~~~~~~~~~~~~--iGqFGIGf~S~Fmvad~V~V~Tk~~~~~-~~~w~s~~--~~~~~v~~~~~~~~~~GT~I 148 (224)
.|+. |. ...+.-. .+.+|.++.-.|.----++|..+..... .-.|..+- ...-.+....+ ..+|+|
T Consensus 119 tssn--y~----d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~~~---~~yTki 189 (842)
T KOG0355|consen 119 TSSN--YD----DDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTD---EDYTKI 189 (842)
T ss_pred hccc--cC----CCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecCCC---CCcceE
Confidence 5553 21 1112222 3445555555555555555555544321 23565542 12222333212 229998
Q ss_pred EEE
Q psy15682 149 VLH 151 (224)
Q Consensus 149 ~L~ 151 (224)
++.
T Consensus 190 tF~ 192 (842)
T KOG0355|consen 190 TFS 192 (842)
T ss_pred EeC
Confidence 875
No 92
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=50.90 E-value=12 Score=35.63 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=13.0
Q ss_pred CcEEEEEeCCCCCCH
Q psy15682 48 EKTLTIIDSGIGMTK 62 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~ 62 (224)
...|.|.|||+||+.
T Consensus 503 ~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 503 EHTVSIRDDGIGIGE 517 (565)
T ss_pred EEEEEEEECCcCcCC
Confidence 367999999999985
No 93
>KOG0787|consensus
Probab=48.40 E-value=29 Score=33.09 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=57.1
Q ss_pred CCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccc
Q psy15682 19 EKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGV 98 (224)
Q Consensus 19 ~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGI 98 (224)
-|.+.|.|..+.+| -.+.|+|-|=|.+..++.+.| .-..|-...- ...+....++--||-
T Consensus 287 ~ppI~V~V~~gdeD----------------l~ikISDrGGGV~~~~~drlf-~Y~ySTa~~~---~~d~~~~~plaGfG~ 346 (414)
T KOG0787|consen 287 LPPIKVTVAKGDED----------------LLIKISDRGGGVPHRDIDRLF-SYMYSTAPAP---SSDNNRTAPLAGFGF 346 (414)
T ss_pred CCCeEEEEecCCcc----------------eEEEEecCCCCcChhHHHHHH-hhhcccCCCC---CCCCCCcCccccccc
Confidence 34566677778888 999999999999999998754 3333332110 011122456777887
Q ss_pred eeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCChH
Q psy15682 99 GFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQA 157 (224)
Q Consensus 99 Gf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~ 157 (224)
|+- ++|-+- + .-+|...+... .+.||-+.|+||.-..
T Consensus 347 GLP-----------isrlYa-~------yf~Gdl~L~Sl----eG~GTD~yI~Lk~ls~ 383 (414)
T KOG0787|consen 347 GLP-----------ISRLYA-R------YFGGDLKLQSL----EGIGTDVYIYLKALSM 383 (414)
T ss_pred CCc-----------HHHHHH-H------HhCCCeeEEee----eccccceEEEeccCCc
Confidence 772 233221 0 01122333322 2579999999986543
No 94
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=46.39 E-value=16 Score=22.28 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=10.3
Q ss_pred CCcEEEEEeCCC
Q psy15682 47 EEKTLTIIDSGI 58 (224)
Q Consensus 47 ~~~~L~I~DnGi 58 (224)
++.+|+|.|+|.
T Consensus 12 gn~qITIeD~GP 23 (30)
T PF07492_consen 12 GNFQITIEDTGP 23 (30)
T ss_pred CCcEEEEecCCC
Confidence 458999999995
No 95
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=42.20 E-value=34 Score=29.60 Aligned_cols=15 Identities=33% Similarity=0.286 Sum_probs=13.4
Q ss_pred cEEEEEeCCCCCCHH
Q psy15682 49 KTLTIIDSGIGMTKA 63 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~ 63 (224)
..++|+|||.|++.+
T Consensus 160 ~~l~v~deg~G~~~~ 174 (221)
T COG3920 160 FLLTVWDEGGGPPVE 174 (221)
T ss_pred EEEEEEECCCCCCCC
Confidence 799999999998864
No 96
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=41.76 E-value=27 Score=33.50 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=12.6
Q ss_pred CcEEEEEeCCCCCCH
Q psy15682 48 EKTLTIIDSGIGMTK 62 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~ 62 (224)
.-.+.|.|||+|++.
T Consensus 441 ~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 441 RLMLEIEDDGSGLPP 455 (497)
T ss_pred EEEEEEecCCcCCCC
Confidence 388999999999753
No 97
>PF12170 DNA_pol3_tau_5: DNA polymerase III tau subunit V interacting with alpha; InterPro: IPR021029 This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with PF00004 from PFAM. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. The extreme C-terminal region of this domain 5 is the part which interacts with the alpha subunit of the DNA polymerase III holoenzyme [, ]. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 2AYA_A.
Probab=39.64 E-value=34 Score=27.89 Aligned_cols=42 Identities=24% Similarity=0.512 Sum_probs=31.2
Q ss_pred CCcEEEEEecCChHhhhcHHHHHHHHHHhccccccceEEeee
Q psy15682 144 RGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVE 185 (224)
Q Consensus 144 ~GT~I~L~Lk~~~~e~~~~~~vk~likkys~~i~~PI~v~~~ 185 (224)
.|-.|.|+|++++.+..++.....|-...+.++..||.+...
T Consensus 50 ~~~~v~L~L~~~q~HL~~~~a~~~L~~ALs~~~g~~i~L~I~ 91 (142)
T PF12170_consen 50 EDDQVCLHLRPSQKHLNNDSAQEQLQQALSEYLGEPIKLSIE 91 (142)
T ss_dssp -SSEEEEEE-GGGTTT--HHHHHHHHHHHHHHHSS--EEEEE
T ss_pred cCCEEEEEEChhhHhhCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 356799999999999888888889999999999999988764
No 98
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=38.81 E-value=23 Score=35.87 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=33.6
Q ss_pred ceEEEEecCccccccc---------cccCCcCCCCCcEEEEEeCCCCCCHHHHHHhh
Q psy15682 22 LHIKIIPNKEEKTLTI---------IDSGFIPNKEEKTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 22 ~~I~i~~n~~~a~~~~---------i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l 69 (224)
++..|+.|+.+|+-.. |-+.+.+.++.-.+.|.|||.|.+.+.+.+.|
T Consensus 604 vf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 604 VFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 3445677777766311 23333456667889999999999999998865
No 99
>PHA01746 hypothetical protein
Probab=33.14 E-value=30 Score=27.56 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=12.7
Q ss_pred HHHHHHHHHhccccccceEE
Q psy15682 163 KKIKEIVKKHSQFIGYPIKL 182 (224)
Q Consensus 163 ~~vk~likkys~~i~~PI~v 182 (224)
-.+-+.+.+||.+|.-=|.+
T Consensus 74 ~lIa~FLeKYS~~LnkYVkF 93 (131)
T PHA01746 74 KLIAEFLEKYSDFLNEYVKF 93 (131)
T ss_pred HHHHHHHHHHHHHHHHHeee
Confidence 34567778888887544444
No 100
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=26.76 E-value=39 Score=23.49 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.0
Q ss_pred CCCCHHHHHHhhch
Q psy15682 58 IGMTKADLVNNLGT 71 (224)
Q Consensus 58 iGMt~~eL~~~l~t 71 (224)
.|||++++...||+
T Consensus 14 ~GmTk~qV~~lLG~ 27 (71)
T PF04355_consen 14 PGMTKDQVRALLGS 27 (71)
T ss_dssp TTSBHHHHHHHHTS
T ss_pred CCCCHHHHHHhcCC
Confidence 68999999998764
No 101
>KOG3938|consensus
Probab=24.12 E-value=69 Score=29.40 Aligned_cols=11 Identities=55% Similarity=0.749 Sum_probs=10.4
Q ss_pred cEEEEEeCCCC
Q psy15682 49 KTLTIIDSGIG 59 (224)
Q Consensus 49 ~~L~I~DnGiG 59 (224)
--|+|.|||.|
T Consensus 139 lGlTITDNG~G 149 (334)
T KOG3938|consen 139 LGLTITDNGAG 149 (334)
T ss_pred cceEEeeCCcc
Confidence 78999999999
No 102
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=22.77 E-value=80 Score=32.43 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=20.5
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHh
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNN 68 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~ 68 (224)
.++.-.|+|+|+|-|++.+-|...
T Consensus 473 ~gn~ivIev~DDG~Gid~ekI~~K 496 (716)
T COG0643 473 EGNNIVIEVSDDGAGIDREKIREK 496 (716)
T ss_pred CCCeEEEEEeeCCCCCCHHHHHHH
Confidence 455688999999999999988876
No 103
>KOG0911|consensus
Probab=21.77 E-value=70 Score=28.32 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=21.4
Q ss_pred hcHHHHHHHHHHhccccccc-eEEeee
Q psy15682 160 IEEKKIKEIVKKHSQFIGYP-IKLLVE 185 (224)
Q Consensus 160 ~~~~~vk~likkys~~i~~P-I~v~~~ 185 (224)
++...||+.+|.||++..|| +||+++
T Consensus 177 L~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 177 LTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred cCCHHHHHHhhhhcCCCCccceeECCE
Confidence 45567999999999999998 577665
No 104
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=21.24 E-value=1.6e+02 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=22.1
Q ss_pred eEeeecCeEEEEeeeCCCceeEEEeCCCCceE
Q psy15682 102 SAYMVADKVTVTSKHNDNEQYIWESSAGGSFT 133 (224)
Q Consensus 102 S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~ 133 (224)
-.||-.++|-|+-+..++-.+.+...-++.|+
T Consensus 12 cgf~r~~kilviiktkgs~n~~~~~e~~~~yt 43 (66)
T PF09196_consen 12 CGFIRFNKILVIIKTKGSVNYKYKIEEGAIYT 43 (66)
T ss_dssp EEEEETTTEEEEEES-TTSSCEEEEECCEEEE
T ss_pred eeEEecCEEEEEEecccccceeeeeccCcEEE
Confidence 56999999999999876555555544445555
Done!