Query psy15682
Match_columns 224
No_of_seqs 159 out of 1201
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 18:51:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3peh_A Endoplasmin homolog; st 100.0 1.1E-51 3.8E-56 367.3 17.6 199 1-219 61-261 (281)
2 3nmq_A Heat shock protein HSP 100.0 9.7E-49 3.3E-53 341.7 12.9 175 1-191 54-228 (239)
3 3ied_A Heat shock protein; HSP 100.0 7.8E-48 2.7E-52 338.7 10.4 166 1-184 62-271 (272)
4 1qy5_A Endoplasmin; GRP94, NEC 100.0 2.2E-47 7.4E-52 338.3 11.1 181 1-198 43-229 (269)
5 3o0i_A HSP90AA1 protein; HSP90 100.0 2.6E-44 8.9E-49 316.5 13.0 181 1-197 75-255 (256)
6 2cg9_A ATP-dependent molecular 100.0 4.8E-43 1.6E-47 342.4 14.3 177 1-193 41-218 (677)
7 3t0h_A Heat shock protein HSP 100.0 9.8E-43 3.4E-47 301.9 13.7 181 1-197 47-227 (228)
8 1yc1_A HSP 86, heat shock prot 100.0 2.4E-40 8.3E-45 292.4 13.1 180 1-196 83-262 (264)
9 2gqp_A Endoplasmin; GRP94, HSP 100.0 6.4E-40 2.2E-44 285.0 11.2 170 1-187 47-222 (236)
10 2wer_A ATP-dependent molecular 100.0 2.7E-39 9.3E-44 277.5 14.4 177 1-193 41-218 (220)
11 2o1u_A Endoplasmin; GRP94, HSP 100.0 1.3E-38 4.6E-43 310.8 12.3 169 1-186 60-234 (666)
12 1y4s_A Chaperone protein HTPG; 100.0 1.1E-37 3.7E-42 299.7 9.9 166 1-184 42-212 (559)
13 2ioq_A Chaperone protein HTPG; 100.0 4.4E-37 1.5E-41 298.6 9.7 166 1-184 42-212 (624)
14 2ior_A Chaperone protein HTPG; 100.0 2.6E-34 8.9E-39 249.3 10.9 166 1-184 62-232 (235)
15 1b63_A MUTL; DNA mismatch repa 99.5 1.2E-14 4.2E-19 131.3 6.0 150 26-184 32-195 (333)
16 1h7s_A PMS1 protein homolog 2; 99.3 3.3E-13 1.1E-17 123.6 3.6 143 26-176 42-195 (365)
17 3h4l_A DNA mismatch repair pro 99.3 2.5E-13 8.6E-18 124.7 1.2 141 25-176 32-185 (367)
18 3na3_A DNA mismatch repair pro 99.1 6.3E-12 2.2E-16 114.7 -0.6 123 49-182 58-197 (348)
19 1mu5_A Type II DNA topoisomera 98.8 8.3E-09 2.9E-13 97.3 6.7 115 48-173 70-196 (471)
20 2zbk_B Type 2 DNA topoisomeras 98.7 2.7E-08 9.3E-13 95.1 6.8 116 48-174 69-196 (530)
21 1kij_A DNA gyrase subunit B; t 98.5 7.7E-08 2.6E-12 88.7 4.8 129 49-186 64-207 (390)
22 3fv5_A DNA topoisomerase 4 sub 98.3 4.5E-07 1.5E-11 76.5 5.0 148 25-185 24-191 (201)
23 2q2e_B Type 2 DNA topoisomeras 98.3 6.3E-08 2.2E-12 94.2 -0.8 127 37-175 61-202 (621)
24 1s16_A Topoisomerase IV subuni 98.1 3E-06 1E-10 78.1 6.0 129 49-186 63-206 (390)
25 1zxm_A TOPO IIA ATPase, DNA to 97.9 6.5E-06 2.2E-10 76.2 4.6 129 49-185 86-232 (400)
26 4duh_A DNA gyrase subunit B; s 97.9 7.8E-06 2.7E-10 70.0 4.1 125 49-184 67-207 (220)
27 4emv_A DNA topoisomerase IV, B 97.8 2.6E-05 8.8E-10 67.0 6.7 127 49-185 72-214 (226)
28 1ei1_A DNA gyrase B, GYRB; ATP 97.8 2.2E-05 7.4E-10 72.4 6.6 128 49-186 66-208 (391)
29 3cwv_A DNA gyrase, B subunit, 97.5 0.00017 5.8E-09 66.0 6.6 123 49-186 62-196 (369)
30 3lnu_A Topoisomerase IV subuni 97.4 0.0001 3.4E-09 68.5 4.8 128 49-185 82-224 (408)
31 1pvg_A DNA topoisomerase II; G 96.9 0.00044 1.5E-08 64.3 3.4 99 49-155 98-209 (418)
32 3ttz_A DNA gyrase subunit B; p 96.4 0.0043 1.5E-07 52.0 5.5 109 49-185 63-179 (198)
33 1th8_A Anti-sigma F factor; SP 96.4 0.0026 8.8E-08 48.6 3.9 51 49-115 75-125 (145)
34 3ehh_A Sensor kinase (YOCF pro 95.9 0.0046 1.6E-07 49.8 3.2 18 48-65 161-178 (218)
35 2btz_A Pyruvate dehydrogenase 95.8 0.012 4E-07 52.9 5.8 54 49-107 271-324 (394)
36 2q8g_A [pyruvate dehydrogenase 95.8 0.015 5.1E-07 52.5 6.4 54 49-106 283-336 (407)
37 2e0a_A Pyruvate dehydrogenase 95.7 0.012 4E-07 53.0 5.5 55 49-107 270-324 (394)
38 1y8o_A [pyruvate dehydrogenase 95.5 0.015 5E-07 52.9 5.3 56 48-107 293-348 (419)
39 4gfh_A DNA topoisomerase 2; to 95.4 0.018 6.1E-07 59.8 6.2 116 49-172 93-223 (1177)
40 4ew8_A Sensor protein DIVL; si 95.4 0.019 6.6E-07 47.4 5.2 45 46-106 185-229 (268)
41 3d36_A Sporulation kinase B; G 95.3 0.021 7.1E-07 46.3 5.1 46 46-106 153-198 (244)
42 1id0_A PHOQ histidine kinase; 95.3 0.011 3.8E-07 44.8 3.2 48 45-106 71-118 (152)
43 2c2a_A Sensor histidine kinase 95.2 0.0095 3.2E-07 49.4 3.0 50 47-106 172-221 (258)
44 1i58_A Chemotaxis protein CHEA 95.2 0.018 6.2E-07 45.5 4.5 18 49-66 92-109 (189)
45 1ysr_A Sensor-type histidine k 95.2 0.017 5.7E-07 43.8 4.0 47 47-106 76-122 (150)
46 1bxd_A ENVZ(290-450), protein 95.2 0.012 4E-07 45.3 3.2 48 48-107 77-124 (161)
47 3a0y_A Sensor protein; ATP-LID 94.7 0.011 3.8E-07 44.5 1.8 23 47-69 78-100 (152)
48 1gkz_A [3-methyl-2-oxobutanoat 94.5 0.018 6.3E-07 51.4 3.0 22 49-70 279-300 (388)
49 3sl2_A Sensor histidine kinase 94.5 0.016 5.6E-07 45.3 2.3 49 48-106 77-125 (177)
50 3jz3_A Sensor protein QSEC; he 94.4 0.02 6.9E-07 45.7 2.6 43 51-106 148-190 (222)
51 1r62_A Nitrogen regulation pro 93.7 0.015 5.1E-07 44.1 0.6 21 49-69 92-112 (160)
52 1b3q_A Protein (chemotaxis pro 92.1 0.15 5.1E-06 45.8 4.9 62 49-117 151-236 (379)
53 3a0r_A Sensor protein; four he 91.5 0.053 1.8E-06 46.3 1.1 23 47-69 275-297 (349)
54 3ehg_A Sensor kinase (YOCF pro 90.0 0.094 3.2E-06 39.0 1.2 17 49-65 72-88 (128)
55 3zxo_A Redox sensor histidine 76.2 1.6 5.6E-05 31.6 2.7 16 49-64 74-89 (129)
56 3zxq_A Hypoxia sensor histidin 70.5 0.79 2.7E-05 33.2 -0.3 16 49-64 70-85 (124)
57 4fpp_A Phosphotransferase; fou 69.1 5.8 0.0002 32.7 4.8 22 48-69 178-201 (247)
58 1ixm_A SPO0B, protein (sporula 51.6 6 0.00021 32.3 1.8 22 48-69 145-166 (192)
59 3ke6_A Protein RV1364C/MT1410; 41.9 15 0.00053 32.7 3.0 39 49-114 334-372 (399)
60 2aya_A DNA polymerase III subu 38.0 24 0.00081 26.8 3.2 42 145-186 52-93 (128)
61 2ca6_A RAN GTPase-activating p 28.2 33 0.0011 29.4 2.8 10 49-58 125-134 (386)
62 2yh9_A Small protein A, BAME p 23.1 31 0.001 24.3 1.3 14 58-71 15-28 (88)
63 4hu2_A Probable conserved lipo 20.5 1.6E+02 0.0056 24.1 5.4 57 94-154 109-176 (198)
No 1
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=1.1e-51 Score=367.26 Aligned_cols=199 Identities=51% Similarity=0.789 Sum_probs=179.7
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||++|+|++++...+++.|+|++|+.. ++|+|.|||+|||+++|.++|++||+||++.|
T Consensus 61 A~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~----------------~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f 124 (281)
T 3peh_A 61 ALEKIRFLSLSDESVLGEEKKLEIRISANKEK----------------NILSITDTGIGMTKVDLINNLGTIAKSGTSNF 124 (281)
T ss_dssp HHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT----------------TEEEEEECSCCCCHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHhcCCchhccCCCceEEEEEEcCCC----------------cEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhH
Confidence 78999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred HHHHHc-CCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCC-CCCCCCCcEEEEEecCChHh
Q psy15682 81 MEALQA-GADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDN-SQPLGRGTKIVLHMKEDQAE 158 (224)
Q Consensus 81 ~~~~~~-~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~-~~~~~~GT~I~L~Lk~~~~e 158 (224)
+++++. +.+..+||||||||||+||+|++|+|.|+++++.+|.|++++++.|+|.+.+ +++..+||+|+|||++++.+
T Consensus 125 ~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~fti~~~~~~~~~~~GT~I~L~Lked~~e 204 (281)
T 3peh_A 125 LEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIYKDPRGATLKRGTRISLHLKEDATN 204 (281)
T ss_dssp HHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCEEEEECTTCSTTSSEEEEEEEECGGGGG
T ss_pred HHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccEEEEEcCCCCCCCCCeEEEEEECCchhh
Confidence 999976 5678999999999999999999999999998878999999999999999864 45678999999999999999
Q ss_pred hhcHHHHHHHHHHhccccccceEEeeeeeeeeecCchHHHhhhhhhhhccCCCccccCCCC
Q psy15682 159 YIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGED 219 (224)
Q Consensus 159 ~~~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
|+++++|+++|++||+||+|||+++.+++.++|+++++++++++ ++++++.++++++
T Consensus 205 ~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~~----~~~~~~~e~~~~~ 261 (281)
T 3peh_A 205 LLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVN----DPNYDSVKVEETD 261 (281)
T ss_dssp GGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHTT----CTTSSEEEECCCC
T ss_pred hcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhccc----ccccccccccccc
Confidence 99999999999999999999999999999999999887654322 2345566655544
No 2
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=9.7e-49 Score=341.67 Aligned_cols=175 Identities=76% Similarity=1.198 Sum_probs=162.4
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||++|+|++++..++++.|+|.+|+.. .+|+|.|||+|||+++|.++|++||+||++.|
T Consensus 54 A~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~----------------~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f 117 (239)
T 3nmq_A 54 ALDKIRYESLTDPSKLDSGKELKIDIIPNPQE----------------RTLTLVDTGIGMTKADLINNLGTIAKSGTKAF 117 (239)
T ss_dssp HHHHHHHHHHHCGGGGTTCCCCCEEEEEETTT----------------TEEEEEECSCCCCHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchhccCCCceEEEEEEeCCc----------------cEEEEEeCCCCCCHHHHHHHHHHHhcccchhh
Confidence 78999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCChHhhh
Q psy15682 81 MEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYI 160 (224)
Q Consensus 81 ~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~ 160 (224)
+++++.+.+..+||||||||||+||+|++|+|.|+++++.+|.|++++++.|+|.+.++++..+||+|+|||+++..+|+
T Consensus 118 ~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l 197 (239)
T 3nmq_A 118 MEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYL 197 (239)
T ss_dssp HHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGG
T ss_pred hhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEEecCCCcCCCCCEEEEEECCChHHhc
Confidence 99988767789999999999999999999999999988789999999999999999766677999999999999999999
Q ss_pred cHHHHHHHHHHhccccccceEEeeeeeeeee
Q psy15682 161 EEKKIKEIVKKHSQFIGYPIKLLVEKEREKE 191 (224)
Q Consensus 161 ~~~~vk~likkys~~i~~PI~v~~~~~~~~~ 191 (224)
++++|+++|++||+||+|||+++.+++.++|
T Consensus 198 ~~~~i~~lv~kys~fi~~pI~~~~~~~~~~~ 228 (239)
T 3nmq_A 198 EERRVKEVVKKHSQFIGYPITLYLEKEREKG 228 (239)
T ss_dssp SHHHHHHHHHHHCTTCSSCEEECCCSCC---
T ss_pred CHHHHHHHHHHHHhccCCceEEeeeeeccHH
Confidence 9999999999999999999999887665543
No 3
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=7.8e-48 Score=338.70 Aligned_cols=166 Identities=48% Similarity=0.799 Sum_probs=151.7
Q ss_pred CcchhhhhhccCCCCc-------------------------------------CCCCcceEEEEecCccccccccccCCc
Q psy15682 1 ALDKIRYESLTDPSRL-------------------------------------ESEKNLHIKIIPNKEEKTLTIIDSGFI 43 (224)
Q Consensus 1 aldk~r~~~~~~~~~~-------------------------------------~~~~~~~I~i~~n~~~a~~~~i~~~~~ 43 (224)
||||+| ++|+|++++ ...+++.|+|++|+..
T Consensus 62 A~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~I~I~~Dk~~----------- 129 (272)
T 3ied_A 62 ACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKNDIKKLIIKIKPDKEK----------- 129 (272)
T ss_dssp HHHHHH-HHHHHHHHHHHHCC--------------------------------CGGGGCCEEEEEETTT-----------
T ss_pred HHHHHH-HhccChhhhhccccccccccccccccccccccccccccccccccccCCCCCcEEEEEEeCCC-----------
Confidence 799999 999988755 3456789999999988
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcC-CCCCccCCccceeeeEeeecCeEEEEeeeCCCcee
Q psy15682 44 PNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAG-ADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQY 122 (224)
Q Consensus 44 ~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~-~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~ 122 (224)
++|+|+|||+|||+++|.++|++||+||++.|+++++.+ .+..+||||||||||+||+|++|+|.|+ .++.+|
T Consensus 130 -----~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdkV~V~Sk-~dd~~~ 203 (272)
T 3ied_A 130 -----KTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVEVYTK-KEDQIY 203 (272)
T ss_dssp -----TEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEEEEEEEE-SSSCEE
T ss_pred -----CEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCEEEEEEc-CCCceE
Confidence 999999999999999999999999999999999998865 6789999999999999999999999999 567889
Q ss_pred EEEeCCCCceEEeeCC------CCCCCCCcEEEEEecCChHhhhcHHHHHHHHHHhccccccceEEee
Q psy15682 123 IWESSAGGSFTIKPDN------SQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLV 184 (224)
Q Consensus 123 ~w~s~~~~~~~v~~~~------~~~~~~GT~I~L~Lk~~~~e~~~~~~vk~likkys~~i~~PI~v~~ 184 (224)
.|+|++++.|+|.+++ +++..+||+|+|||++++.+|+++++|+++|++||+||+|||+++.
T Consensus 204 ~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys~fi~~PI~l~~ 271 (272)
T 3ied_A 204 RWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSEFIKFPIEIWS 271 (272)
T ss_dssp EEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCCSCEEECC
T ss_pred EEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHHhCCCCCeEEEe
Confidence 9999999999999864 3467899999999999999999999999999999999999999965
No 4
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=2.2e-47 Score=338.30 Aligned_cols=181 Identities=49% Similarity=0.770 Sum_probs=157.8
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||++|+|++++.+.+++.|+|..|... .+|+|.|||+||++++|.++|++||.||++.|
T Consensus 43 A~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~----------------~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F 106 (269)
T 1qy5_A 43 ALDKIRLISLTDENALAGNEELTVKIKCDKEK----------------NLLHVTDTGVGMTREELVKNLGTIAKSGTSEF 106 (269)
T ss_dssp HHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT----------------TEEEEEECSCCCCHHHHHHHHHSCCSHHHHHH
T ss_pred HHHhhhhhhccCchhccCCCceEEEEEEcCCc----------------eEEEEEECCCCCCHHHHHHHhhhhcccccHHH
Confidence 67899999999999999999999999999877 99999999999999999999999999999999
Q ss_pred HHHHHcC-----CCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCC-CCCCCCCcEEEEEecC
Q psy15682 81 MEALQAG-----ADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDN-SQPLGRGTKIVLHMKE 154 (224)
Q Consensus 81 ~~~~~~~-----~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~-~~~~~~GT~I~L~Lk~ 154 (224)
+++++.. .+..+||||||||||+||+|++|+|.|+++++.++.|++++ +.|++.+.+ ..+..+||+|+|||++
T Consensus 107 ~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g-g~~~i~~~~~~~~~~~GT~I~L~Lk~ 185 (269)
T 1qy5_A 107 LNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKE 185 (269)
T ss_dssp HHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-SCEEEEECTTCSCSSSEEEEEEEECG
T ss_pred HHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeC-CEEEEEeccCCCcCCCCeEEEEEEcc
Confidence 9887643 56789999999999999999999999999887789999998 899999864 2456899999999999
Q ss_pred ChHhhhcHHHHHHHHHHhccccccceEEeeeeeeeeecCchHHH
Q psy15682 155 DQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEE 198 (224)
Q Consensus 155 ~~~e~~~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~~~~~~ 198 (224)
+..+|++..+|+++|++||+||+|||+++.+++.++++++++++
T Consensus 186 d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~ 229 (269)
T 1qy5_A 186 EASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEE 229 (269)
T ss_dssp GGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC-----------
T ss_pred cchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchh
Confidence 98999999999999999999999999999999988888877654
No 5
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=2.6e-44 Score=316.47 Aligned_cols=181 Identities=78% Similarity=1.221 Sum_probs=158.9
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||++|+|++++..++++.|+|.+|... .+|+|.|||+||++++|.++|++||.|+++.|
T Consensus 75 A~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~----------------~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f 138 (256)
T 3o0i_A 75 ALDKIRYESLTDPSKLDSGKELHINLIPNKQD----------------RTLTIVDTGIGMTKADLINNLGTIAKSGTKAF 138 (256)
T ss_dssp HHHHHHHHHHHCGGGGTTCCCCCEEEEEETTT----------------TEEEEEECSCCCCHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchhccCCCceEEEEEEcCCc----------------eEEEEecCCCCcCHHHHHHHHHhhccccccch
Confidence 68999999999999999999999999999887 99999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCChHhhh
Q psy15682 81 MEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYI 160 (224)
Q Consensus 81 ~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~ 160 (224)
++.++.+.+...+|+||+||+|+||||++|+|.|++.++.+|.|++.+++.|++.+.++.+..+||+|+|+||.+..+|+
T Consensus 139 ~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~ 218 (256)
T 3o0i_A 139 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 218 (256)
T ss_dssp HHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGG
T ss_pred hhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceEEEeeCCCCCCCCCcEEEEEEcCcchhhc
Confidence 88887556789999999999999999999999999987778999999999999998655567899999999999999999
Q ss_pred cHHHHHHHHHHhccccccceEEeeeeeeeeecCchHH
Q psy15682 161 EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEE 197 (224)
Q Consensus 161 ~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~~~~~ 197 (224)
+..+|+++|++||+||+|||+++.++..++|++++++
T Consensus 219 e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~~~~~ 255 (256)
T 3o0i_A 219 EERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEA 255 (256)
T ss_dssp CHHHHHHHHHHHCTTCSSCEEECCC------------
T ss_pred cHHHHHHHHHHHHhhCCCCeEEeeeeeecccCCCccC
Confidence 9999999999999999999999999998898887664
No 6
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-43 Score=342.36 Aligned_cols=177 Identities=66% Similarity=1.052 Sum_probs=160.0
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||++|+|++++.+.+++.|+|.+|... .+|+|+|||+|||+++|.++|++||+||++.|
T Consensus 41 A~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~----------------~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f 104 (677)
T 2cg9_A 41 ALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ----------------KVLEIRDSGIGMTKAELINNLGTIAKSGTKAF 104 (677)
T ss_dssp HHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG----------------TEEEEEECSCCCCHHHHHGGGSSSSSCTTHHH
T ss_pred HHHHHHHHhccChhhccCCCCcEEEEEEeCCC----------------CEEEEEECCCCCCHHHHHHHHHhHhccccHHH
Confidence 68999999999999999999999999999887 99999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCC-CCCCCCCcEEEEEecCChHhh
Q psy15682 81 MEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDN-SQPLGRGTKIVLHMKEDQAEY 159 (224)
Q Consensus 81 ~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~-~~~~~~GT~I~L~Lk~~~~e~ 159 (224)
+++++...+...||||||||||+||+|++|+|.|+++++.++.|++++++.|++.+++ +.+..+||+|+|||+++..+|
T Consensus 105 ~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~ 184 (677)
T 2cg9_A 105 MEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEY 184 (677)
T ss_dssp HSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECCSSCCCSSEEEEEEEECTTGGGG
T ss_pred HHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecCCCCCCCCCeEEEEEEcchhhcc
Confidence 8776655577899999999999999999999999998877899999999999999853 345689999999999999999
Q ss_pred hcHHHHHHHHHHhccccccceEEeeeeeeeeecC
Q psy15682 160 IEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELS 193 (224)
Q Consensus 160 ~~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~ 193 (224)
++..+|+++|++||+||+|||+++..++.+++++
T Consensus 185 l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~ 218 (677)
T 2cg9_A 185 LEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVP 218 (677)
T ss_dssp GCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC--
T ss_pred ccHHHHHHHHHHHHhhCCCCeEEeeccccccCcC
Confidence 9999999999999999999999986655544544
No 7
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=9.8e-43 Score=301.92 Aligned_cols=181 Identities=78% Similarity=1.221 Sum_probs=156.9
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||.+++++..+..++++.|+|..|... .+|+|.|||+||++++|..+|+++|.|+++.|
T Consensus 47 A~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~----------------~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f 110 (228)
T 3t0h_A 47 ALDKIRYESLTDPSKLDSGKELHINLIPNKQD----------------RTLTIVDTGIGMTKADLINNLGTIAKSGTKAF 110 (228)
T ss_dssp HHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT----------------TEEEEEECSCCCCHHHHHTGGGSCHHHHHHHH
T ss_pred HHHHHHhhhccCcccccCCCceEEEEEEeCCe----------------eEEEEEeCCCCCCHHHHHHHHHhhccccchhh
Confidence 67899999999999988888999999998877 99999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCChHhhh
Q psy15682 81 MEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYI 160 (224)
Q Consensus 81 ~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~ 160 (224)
.+.++.+.+...+|+||+||+|+||+|++|+|.|++.++.++.|++.+++.|++.+.+..+..+||+|+|+||++..+|+
T Consensus 111 ~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~ 190 (228)
T 3t0h_A 111 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 190 (228)
T ss_dssp HHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGG
T ss_pred hhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEeecCCCCCCCCcEEEEEECCchhhhh
Confidence 88776555788999999999999999999999999987778999999989999998654567899999999999999999
Q ss_pred cHHHHHHHHHHhccccccceEEeeeeeeeeecCchHH
Q psy15682 161 EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEE 197 (224)
Q Consensus 161 ~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~~~~~ 197 (224)
+..+|+++|++||+||++||+++.++..+++++++++
T Consensus 191 e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~~~~~ 227 (228)
T 3t0h_A 191 EERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEA 227 (228)
T ss_dssp SHHHHHHHHHHHSTTCSSCEEECCC------------
T ss_pred hHHHHHHHHHHHHhhCCCCeEEeecceeeccCCCccC
Confidence 9999999999999999999999999888888876553
No 8
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=2.4e-40 Score=292.36 Aligned_cols=180 Identities=78% Similarity=1.226 Sum_probs=154.7
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||++|+|++++...+++.|+|..|... .+|+|.|||+||++++|.++|++||.|+++.|
T Consensus 83 A~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~----------------~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f 146 (264)
T 1yc1_A 83 ALDKIRYETLTDPSKLDSGKELHINLIPNKQD----------------RTLTIVDTGIGMTKADLINNLGTIAKSGTKAF 146 (264)
T ss_dssp HHHHHHHHHHHCGGGGGGCCCCCEEEEEETTT----------------TEEEEEECSCCCCHHHHHHHHHSCTTSCHHHH
T ss_pred HhhhhhhhhccCccccCCCCeEEEEEEECCCe----------------eEEEEEECCcCCCHHHHHHHHHhhccccchhh
Confidence 56788999999998888888888998887766 89999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCChHhhh
Q psy15682 81 MEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYI 160 (224)
Q Consensus 81 ~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~ 160 (224)
+++++...+...+|+|||||||+||+|++|+|.|++.+..++.|++.+++.|++.+.+.....+||+|+|+|+++..+|+
T Consensus 147 ~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~GT~I~l~Lk~~~~e~~ 226 (264)
T 1yc1_A 147 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 226 (264)
T ss_dssp HHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGG
T ss_pred hhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEeecCCCCCCCCeEEEEEECCchhhhh
Confidence 88887656778999999999999999999999999987778999999888999988644456899999999999888999
Q ss_pred cHHHHHHHHHHhccccccceEEeeeeeeeeecCchH
Q psy15682 161 EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDE 196 (224)
Q Consensus 161 ~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~~~~ 196 (224)
+..+|+++|++||+||+|||+++.+++.++++++++
T Consensus 227 e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~~~~~~~ 262 (264)
T 1yc1_A 227 EERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDE 262 (264)
T ss_dssp SHHHHHHHHHHHTTTCSSCEEECCCC----------
T ss_pred hHHHHHHHHHHHHhhCCCCEEEeeccccccccCCCC
Confidence 999999999999999999999999877666665543
No 9
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=6.4e-40 Score=285.04 Aligned_cols=170 Identities=50% Similarity=0.797 Sum_probs=140.5
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||.++++++++.+.+++.|+|..|... .+|+|.|||+||++++|.++|++||.||++.|
T Consensus 47 A~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~----------------~~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f 110 (236)
T 2gqp_A 47 ALDKIRLISLTDENALAGNEELTVKIKCDKEK----------------NLLHVTDTGVGMTREELVKNLGTIAKSGTSEF 110 (236)
T ss_dssp HHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT----------------TEEEEEECSCCCCHHHHHHHHHCC--------
T ss_pred hhhhhhhhcccCcccccCCCceEEEEEEcCCC----------------CEEEEEECCcCCCHHHHHHHHhhhcccccHhH
Confidence 57799999999999988888899999988776 89999999999999999999999999999988
Q ss_pred HHHHHcC-----CCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCC-CCCCCCCcEEEEEecC
Q psy15682 81 MEALQAG-----ADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDN-SQPLGRGTKIVLHMKE 154 (224)
Q Consensus 81 ~~~~~~~-----~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~-~~~~~~GT~I~L~Lk~ 154 (224)
++++... .+...||||||||||+||+|++|+|.|++.++.++.|++++ +.|++.+.+ .....+||+|+|+|++
T Consensus 111 ~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g-g~~~i~~~~~~~~~~~GT~I~l~Lk~ 189 (236)
T 2gqp_A 111 LNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKE 189 (236)
T ss_dssp -------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESS-SCEEEEECTTCSCSSSEEEEEEEECG
T ss_pred HHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeC-CEEEEEeccCCCCCCCCeEEEEEECC
Confidence 7766542 45679999999999999999999999999877789999998 889998864 2346799999999999
Q ss_pred ChHhhhcHHHHHHHHHHhccccccceEEeeeee
Q psy15682 155 DQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKE 187 (224)
Q Consensus 155 ~~~e~~~~~~vk~likkys~~i~~PI~v~~~~~ 187 (224)
+..+|++..+|+++|++||+|++|||+++.++.
T Consensus 190 ~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~~ 222 (236)
T 2gqp_A 190 EASDYLELDTIKNLVKKYSQFINFPIYVWSSKT 222 (236)
T ss_dssp GGGGGGCHHHHHHHHHHHHTTCSSCEEEEEECC
T ss_pred cchhhChHHHHHHHHHHHhhhCCCceEEeeeec
Confidence 988999999999999999999999999977643
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=2.7e-39 Score=277.50 Aligned_cols=177 Identities=66% Similarity=1.052 Sum_probs=156.5
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++++||.++++++.+...+++.|+|..|... .+|+|.|||+||++++|.++|+++|.|+++.|
T Consensus 41 A~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~----------------~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f 104 (220)
T 2wer_A 41 ALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ----------------KVLEIRDSGIGMTKAELINNLGTIAKSGTKAF 104 (220)
T ss_dssp HHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGG----------------TEEEEEECSCCCCHHHHHHHTTTSCCTTHHHH
T ss_pred HHHHHHhhcccCchhccCCCcEEEEEEECCCC----------------CEEEEEEcCCCCCHHHHHHHHHhHhcccchhH
Confidence 46688999999999888888899999888776 89999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCC-CCCCCCCcEEEEEecCChHhh
Q psy15682 81 MEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDN-SQPLGRGTKIVLHMKEDQAEY 159 (224)
Q Consensus 81 ~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~-~~~~~~GT~I~L~Lk~~~~e~ 159 (224)
+++++...+...+|+|||||||+||+|++|+|.|++.+..++.|++++++.|++.+.+ .....+||+|+|+|+++..+|
T Consensus 105 ~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~ 184 (220)
T 2wer_A 105 MEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEY 184 (220)
T ss_dssp HHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEECSSSCCCSSEEEEEEEECTTCGGG
T ss_pred HHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeecccCCCCCCCCeEEEEEECcchHHh
Confidence 8888765677899999999999999999999999998767899999988899998853 235679999999999998899
Q ss_pred hcHHHHHHHHHHhccccccceEEeeeeeeeeecC
Q psy15682 160 IEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELS 193 (224)
Q Consensus 160 ~~~~~vk~likkys~~i~~PI~v~~~~~~~~~~~ 193 (224)
++..+|+++|++|++|+++||+++.+++++++++
T Consensus 185 ~e~~~i~~~v~~~a~~l~~PI~~~~~~~~~~~~~ 218 (220)
T 2wer_A 185 LEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVP 218 (220)
T ss_dssp GCHHHHHHHHHHHCTTCCSCEEECCCCCCC----
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEeccccccccC
Confidence 9999999999999999999999998776655544
No 11
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=1.3e-38 Score=310.75 Aligned_cols=169 Identities=50% Similarity=0.802 Sum_probs=132.3
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||++|+|++++.+.+++.|+|..|... .+|+|+|||+|||+++|.++|++||.||++.|
T Consensus 60 A~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~----------------~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f 123 (666)
T 2o1u_A 60 ALDKIRLISLTDENALAGNEELTVKIKCDKEK----------------NLLHVTDTGVGMTREELVKNLGTIAKSGTSEF 123 (666)
T ss_dssp HHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT----------------TEEEEEECSCCCCHHHHHHHTTC---------
T ss_pred HHHHHHHHhccCchhccCCCccEEEEEEeCCC----------------CEEEEEECCCCCCHHHHHHHHhhhcccccHHH
Confidence 67999999999999998888899999999877 99999999999999999999999999999999
Q ss_pred HHHHHcC-----CCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCceEEeeCC-CCCCCCCcEEEEEecC
Q psy15682 81 MEALQAG-----ADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDN-SQPLGRGTKIVLHMKE 154 (224)
Q Consensus 81 ~~~~~~~-----~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~-~~~~~~GT~I~L~Lk~ 154 (224)
+++++.. .+...||||||||||+||+|++|+|.|+++++.++.|++++ +.|++.+.. ..+..+||+|+|+|++
T Consensus 124 ~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-g~~ti~~~~~~~~~~~GT~I~L~Lk~ 202 (666)
T 2o1u_A 124 LNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKE 202 (666)
T ss_dssp ----------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-SCCEEEECTTCCSSSSEEEEEEEECT
T ss_pred HHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-CeEEEEecccCCCCCCCeEEEEEEcc
Confidence 8887653 46789999999999999999999999999877789999998 899998864 2346899999999999
Q ss_pred ChHhhhcHHHHHHHHHHhccccccceEEeeee
Q psy15682 155 DQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK 186 (224)
Q Consensus 155 ~~~e~~~~~~vk~likkys~~i~~PI~v~~~~ 186 (224)
+..+|++..+|+++|++||+||++||.++.++
T Consensus 203 d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~ 234 (666)
T 2o1u_A 203 EASDYLELDTIKNLVKKYSQFINFPIYVWSSK 234 (666)
T ss_dssp TTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC
T ss_pred chhhhccHHHHHHHHHHHHhhCCCceEEeccc
Confidence 99999999999999999999999999997653
No 12
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=1.1e-37 Score=299.68 Aligned_cols=166 Identities=40% Similarity=0.750 Sum_probs=148.1
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||++|+|++++.+.+++.|+|..|+.. .+|+|+|||+|||+++|.++|++||.||++.|
T Consensus 42 A~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~----------------~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f 105 (559)
T 1y4s_A 42 AADKLRFRALSNPDLYEGDGELRVRVSFDKDK----------------RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSF 105 (559)
T ss_dssp HHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT----------------TEEEEEECSSCCCHHHHHHHHSCCSCCCCCCT
T ss_pred HhHhHHHhhccCchhccCCCccEEEEEEeCCC----------------cEEEEEECCCCCCHHHHHHHHhhhcccccHHH
Confidence 67899999999999998888999999998887 89999999999999999999999999999988
Q ss_pred HHHHHc--CCCCCccCCccceeeeEeeecCeEEEEeeeCC---CceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCC
Q psy15682 81 MEALQA--GADISMIGQFGVGFYSAYMVADKVTVTSKHND---NEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKED 155 (224)
Q Consensus 81 ~~~~~~--~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~---~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~ 155 (224)
+++++. ..+...+||||+||||+||+|++|+|.|++++ ..++.|++.+++.|++.+. ....+||+|+|+|+++
T Consensus 106 ~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~--~~~~~GT~I~L~Lk~d 183 (559)
T 1y4s_A 106 LESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADI--TKEDRGTEITLHLREG 183 (559)
T ss_dssp TCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEEE--CCCSCEEEEEEEECTT
T ss_pred HHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeEEeEC--CCCCCCeEEEEEEcch
Confidence 765543 24678999999999999999999999999986 4579999999999999875 2457999999999999
Q ss_pred hHhhhcHHHHHHHHHHhccccccceEEee
Q psy15682 156 QAEYIEEKKIKEIVKKHSQFIGYPIKLLV 184 (224)
Q Consensus 156 ~~e~~~~~~vk~likkys~~i~~PI~v~~ 184 (224)
..+|++..+|+++|++||.||++||.+..
T Consensus 184 ~~Efle~~~I~~iv~kys~fi~~PI~~~~ 212 (559)
T 1y4s_A 184 EDEFLDDWRVRSIISKYSDHIALPVEIEK 212 (559)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred hhhcchHHHHHHHHHHHhccCCCceEEee
Confidence 99999999999999999999999999854
No 13
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=4.4e-37 Score=298.61 Aligned_cols=166 Identities=40% Similarity=0.750 Sum_probs=141.4
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||++|++++++.+.+++.|+|..|+.. .+|+|+|||+|||+++|.++|++||+||++.|
T Consensus 42 A~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~----------------~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f 105 (624)
T 2ioq_A 42 AADKLRFRALSNPDLYEGDGELRVRVSFDKDK----------------RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSF 105 (624)
T ss_dssp HHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT----------------TEEEEEECSCCCCHHHHHHHHHHHCC------
T ss_pred hhhhhHHhhccCcccccCCCCcEEEEEEeCCC----------------cEEEEEECCCCCCHHHHHHHHHhhcccccHHH
Confidence 67899999999999998888899999998877 99999999999999999999999999999999
Q ss_pred HHHHHc--CCCCCccCCccceeeeEeeecCeEEEEeeeCC---CceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCC
Q psy15682 81 MEALQA--GADISMIGQFGVGFYSAYMVADKVTVTSKHND---NEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKED 155 (224)
Q Consensus 81 ~~~~~~--~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~---~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~ 155 (224)
+++++. ..+...+||||+||||+||+|++|+|.|++.+ ..++.|++.+++.|++.+. ....+||+|+|+|+++
T Consensus 106 ~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~--~~~~~GT~I~L~Lk~d 183 (624)
T 2ioq_A 106 LESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADI--TKEDRGTEITLHLREG 183 (624)
T ss_dssp ---------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCEEEEE--CCSSSEEEEEEEECTT
T ss_pred HHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeEEEEEC--CCCCCCeEEEEEEcch
Confidence 887764 24678999999999999999999999999986 4579999999899999875 2457999999999999
Q ss_pred hHhhhcHHHHHHHHHHhccccccceEEee
Q psy15682 156 QAEYIEEKKIKEIVKKHSQFIGYPIKLLV 184 (224)
Q Consensus 156 ~~e~~~~~~vk~likkys~~i~~PI~v~~ 184 (224)
..+|++..+|+++|++||+||++||.+..
T Consensus 184 ~~Efl~~~~i~~ivkkys~fi~~PI~~~~ 212 (624)
T 2ioq_A 184 EDEFLDDWRVRSIISKYSDHIALPVEIEK 212 (624)
T ss_dssp CGGGGCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred hhhcchHHHHHHHHHHHhccCCCceEEee
Confidence 99999999999999999999999999854
No 14
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=2.6e-34 Score=249.34 Aligned_cols=166 Identities=40% Similarity=0.749 Sum_probs=144.4
Q ss_pred CcchhhhhhccCCCCcCCCCcceEEEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhH
Q psy15682 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKAS 80 (224)
Q Consensus 1 aldk~r~~~~~~~~~~~~~~~~~I~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f 80 (224)
|++|+||..++|+++..+..++.|+|..|... .+|+|.|||+||++++|..+|+++|.|+++.|
T Consensus 62 A~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~----------------~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f 125 (235)
T 2ior_A 62 AADKLRFRALSNPDLYEGDGELRVRVSFDKDK----------------RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSF 125 (235)
T ss_dssp HHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT----------------TEEEEEECSSCCCHHHHHHHHTTCCCTTHHHH
T ss_pred HHHHHHhhhccCccccCCCceEEEEEEEcCCc----------------eEEEEEECCCCCCHHHHHHHHHHHccccccch
Confidence 45688999999998887777888998888776 78999999999999999999999999999888
Q ss_pred HHHHHcC--CCCCccCCccceeeeEeeecCeEEEEeeeCCC---ceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecCC
Q psy15682 81 MEALQAG--ADISMIGQFGVGFYSAYMVADKVTVTSKHNDN---EQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKED 155 (224)
Q Consensus 81 ~~~~~~~--~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~---~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~~ 155 (224)
.+.++.. .+...+|+|||||+|+|++|++|+|.|++.+. .++.|.+++++.|++.+. ....+||+|+|+|+++
T Consensus 126 ~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~i~~~--~~~~~GT~V~v~Lk~~ 203 (235)
T 2ior_A 126 LESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADI--TKEDRGTEITLHLREG 203 (235)
T ss_dssp HHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEEEEEE--CCCSCEEEEEEEECTT
T ss_pred hhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEEEeeC--CCCCCCEEEEEEEcCc
Confidence 7654310 23478999999999999999999999999763 479999998888998874 2457999999999998
Q ss_pred hHhhhcHHHHHHHHHHhccccccceEEee
Q psy15682 156 QAEYIEEKKIKEIVKKHSQFIGYPIKLLV 184 (224)
Q Consensus 156 ~~e~~~~~~vk~likkys~~i~~PI~v~~ 184 (224)
..+|++..+|+++|++|++||++||+++.
T Consensus 204 ~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 204 EDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp CGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred hhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 88999999999999999999999999964
No 15
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.50 E-value=1.2e-14 Score=131.28 Aligned_cols=150 Identities=22% Similarity=0.283 Sum_probs=98.1
Q ss_pred EEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee
Q psy15682 26 IIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM 105 (224)
Q Consensus 26 i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm 105 (224)
|+.|+-||.+..|++.+.. .+...|+|.|||+||+++++...|.+.+.|....+ +.+. .....|++|+|+.|+++
T Consensus 32 Li~NaidA~a~~I~I~i~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~-~d~~---~~~~~G~~G~gl~si~~ 106 (333)
T 1b63_A 32 LVENSLDAGATRIDIDIER-GGAKLIRIRDNGCGIKKDELALALARHATSKIASL-DDLE---AIISLGFRGEALASISS 106 (333)
T ss_dssp HHHHHHHTTCSEEEEEEEG-GGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSH-HHHH---TCCSSCCSSCHHHHHHT
T ss_pred HHHHHHHCCCCeEEEEEEe-CCceEEEEEEcCCCcCHHHHHHhhhcccccCcccc-chhh---hccccCccccchhhhhc
Confidence 4555555554444444432 12368999999999999999999988876632222 1221 24578999999999999
Q ss_pred ecCeEEEEeeeCCC-ceeEEEeCCCC-ceEEeeCCCCCCCCCcEEEEE-ecC---ChHhhh-----cHHHHHHHHHHhcc
Q psy15682 106 VADKVTVTSKHNDN-EQYIWESSAGG-SFTIKPDNSQPLGRGTKIVLH-MKE---DQAEYI-----EEKKIKEIVKKHSQ 174 (224)
Q Consensus 106 vad~V~V~Tk~~~~-~~~~w~s~~~~-~~~v~~~~~~~~~~GT~I~L~-Lk~---~~~e~~-----~~~~vk~likkys~ 174 (224)
++ +|+|.|++.+. .+|.|...+.. .+.+.+. ...+||+|+++ |-. ....|+ +-.++++++++|+-
T Consensus 107 vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al 182 (333)
T 1b63_A 107 VS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA---AHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 182 (333)
T ss_dssp TS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE---CCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CC-cEEEEEecCCCceEEEEEEcCCcceEeeecc---cCCCCCEEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhc
Confidence 99 89999999764 36777666554 4455442 24689999998 211 111222 22678889999875
Q ss_pred c---cccceEEee
Q psy15682 175 F---IGYPIKLLV 184 (224)
Q Consensus 175 ~---i~~PI~v~~ 184 (224)
. +.|.+..++
T Consensus 183 ~~p~v~~~l~~ng 195 (333)
T 1b63_A 183 ARFDVTINLSHNG 195 (333)
T ss_dssp HCTTCEEEEEETT
T ss_pred cCCCcEEEEEECC
Confidence 3 334444443
No 16
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.34 E-value=3.3e-13 Score=123.58 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=90.2
Q ss_pred EEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEee
Q psy15682 26 IIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM 105 (224)
Q Consensus 26 i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm 105 (224)
|+.|+-||-+..|.+.+.. .+...|+|.|||+||+.+++...|...+.|....+ .........|.+|+|++|+++
T Consensus 42 Lv~NAiDA~a~~I~I~i~~-~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~----~dl~~i~s~G~rG~gl~si~~ 116 (365)
T 1h7s_A 42 LVENSLDAGATNIDLKLKD-YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEF----ADLTQVETFGFRGEALSSLCA 116 (365)
T ss_dssp HHHHHHHTTCSEEEEEEEG-GGTSEEEEEECSCCCCGGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEEe-CCcEEEEEEECCCCcCHHHHHHHhhhccccccccc----cchhcccccCCCCchhhhhhh
Confidence 3444444433344443322 23478999999999999999998887765522111 011122457999999999999
Q ss_pred ecCeEEEEeeeCCC-ceeEEEeCCCCceEEeeCCCCCCCCCcEEEEE-ecCCh----Hhhh-----cHHHHHHHHHHhcc
Q psy15682 106 VADKVTVTSKHNDN-EQYIWESSAGGSFTIKPDNSQPLGRGTKIVLH-MKEDQ----AEYI-----EEKKIKEIVKKHSQ 174 (224)
Q Consensus 106 vad~V~V~Tk~~~~-~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~-Lk~~~----~e~~-----~~~~vk~likkys~ 174 (224)
+| +|+|.|++.+. .+|.|...++|.+..... ....+||+|+++ |-.+. ..|+ +..++++++++|+-
T Consensus 117 vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~--~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al 193 (365)
T 1h7s_A 117 LS-DVTISTCHASAKVGTRLMFDHNGKIIQKTP--YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCI 193 (365)
T ss_dssp HS-EEEEEEECTTCSSCEEEEECTTSCEEEEEE--CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hc-cEEEEEccCCCcceEEEEEcCCCceEeecc--cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhh
Confidence 99 99999998764 378999876565543221 234689999997 43221 1143 24678889999876
Q ss_pred cc
Q psy15682 175 FI 176 (224)
Q Consensus 175 ~i 176 (224)
+-
T Consensus 194 ~~ 195 (365)
T 1h7s_A 194 IS 195 (365)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 17
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.31 E-value=2.5e-13 Score=124.66 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=91.8
Q ss_pred EEEecCccccccccccCCcCCCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEe
Q psy15682 25 KIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAY 104 (224)
Q Consensus 25 ~i~~n~~~a~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~F 104 (224)
+|+.|+-||-+..|.+-+. +.+...|+|.|||+||+.+++...+..-+.|....+ ..-......|.+|.|++|.+
T Consensus 32 eLv~NaiDA~a~~I~I~i~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~----~Dl~~i~t~GfrGeaL~Si~ 106 (367)
T 3h4l_A 32 ELVDNSIDANANQIEIIFK-DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKF----QDVAKVQTLGFRGEALSSLC 106 (367)
T ss_dssp HHHHHHHHTTCSEEEEEEE-TTTTSEEEEEECSCCCCGGGTTTTTCCEEC-------------CCCCEEEETTHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEE-eCCEEEEEEEECCCCcChhHhccceeccccCcCCch----hhhhhhhccCccchHHHHhh
Confidence 3555665655555555442 234479999999999999999876543332221111 11122356788899999999
Q ss_pred eecCeEEEEeeeCCCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEE-------------ecCChHhhhcHHHHHHHHHH
Q psy15682 105 MVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLH-------------MKEDQAEYIEEKKIKEIVKK 171 (224)
Q Consensus 105 mvad~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~-------------Lk~~~~e~~~~~~vk~likk 171 (224)
++| +|+|.|++.+..+|.|....+|.+.... + ....+||+|++. ++....+ -.++++++++
T Consensus 107 avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-~-~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e---~~~i~~~l~~ 180 (367)
T 3h4l_A 107 GIA-KLSVITTTSPPKADKLEYDMVGHITSKT-T-TSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQ---FTKCLTVIQG 180 (367)
T ss_dssp HSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-E-ECCSSEEEEEEESTTTTCHHHHHHHHTTHHHH---HHHHHHHHHH
T ss_pred ccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-c-ccCCCCeEEEEchhhccCchhhhhhccchHHH---HHHHHHHHHH
Confidence 999 7999999977567899987666554322 1 234689999994 3433323 3578899999
Q ss_pred hcccc
Q psy15682 172 HSQFI 176 (224)
Q Consensus 172 ys~~i 176 (224)
|+-.-
T Consensus 181 ~Al~~ 185 (367)
T 3h4l_A 181 YAIIN 185 (367)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 96543
No 18
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.10 E-value=6.3e-12 Score=114.67 Aligned_cols=123 Identities=33% Similarity=0.346 Sum_probs=78.2
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCC-ceeEEEeC
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDN-EQYIWESS 127 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~-~~~~w~s~ 127 (224)
..|+|.|||+||+.+++...|..-+.|-...+ +.+ ......|.+|.|+.|..++| +|+|.|++.+. .+|.|...
T Consensus 58 ~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~-~dl---~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~ 132 (348)
T 3na3_A 58 KLIQIQDNGTGIRKEDLDIVCERFTTSKLQSF-EDL---ASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYS 132 (348)
T ss_dssp SEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC-------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEE
T ss_pred EEEEEEECCcCcChHHhhhhhccccccccCcc-hhh---hccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEe
Confidence 57999999999999999876544332221111 111 12356799999999999999 89999999764 47888876
Q ss_pred CCCce-EEeeCCCCCCCCCcEEEEE------------ecCChHhhhcHHHHHHHHHHhccc---cccceEE
Q psy15682 128 AGGSF-TIKPDNSQPLGRGTKIVLH------------MKEDQAEYIEEKKIKEIVKKHSQF---IGYPIKL 182 (224)
Q Consensus 128 ~~~~~-~v~~~~~~~~~~GT~I~L~------------Lk~~~~e~~~~~~vk~likkys~~---i~~PI~v 182 (224)
++... .+.+. ...+||+|++. |+.... +-.++++++++|+-. +.|-+..
T Consensus 133 ~G~~~~~~~~~---~~~~GTtV~v~~LF~n~P~R~k~lk~~~~---e~~~i~~~l~~~Al~~p~v~f~l~~ 197 (348)
T 3na3_A 133 DGKLKAPPKPC---AGNQGTQITVEDLFYNIATRRKALKNPSE---EYGKILEVVGRYSVHNAGISFSVKK 197 (348)
T ss_dssp TTEESSCCEEE---CCCSEEEEEEESTTTTCHHHHHTSCCHHH---HHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCEEeeeeeEe---cCCCCcEEEECcccccCchhhhhccccHH---HHHHHHHHHHHHHhhCCCeEEEEEE
Confidence 53211 23332 24689999995 333322 236788899998643 4444443
No 19
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.76 E-value=8.3e-09 Score=97.31 Aligned_cols=115 Identities=16% Similarity=0.274 Sum_probs=78.3
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCe-----EEEEeeeCCCc-e
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADK-----VTVTSKHNDNE-Q 121 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~-----V~V~Tk~~~~~-~ 121 (224)
...|+|+|||+||+.+++...|.....+++. ......|.+|+|++++..+++. +.|.|+..+.. .
T Consensus 70 ~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~---------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~ 140 (471)
T 1mu5_A 70 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY---------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRI 140 (471)
T ss_dssp EEEEEEECCSCCCCGGGHHHHHHCCCCC-CC---------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEE
T ss_pred EEEEEEEECCCCCCHHHHHHHhccccccccc---------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceE
Confidence 3789999999999999999877554332221 1234568899999999998876 99999886543 4
Q ss_pred eEEEe--C----CCCceEEeeCCCCCCCCCcEEEEEecCChHhhhcHHHHHHHHHHhc
Q psy15682 122 YIWES--S----AGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHS 173 (224)
Q Consensus 122 ~~w~s--~----~~~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~~~~~vk~likkys 173 (224)
+.|.. . ++..+...+.+.....+||+|++.++.+..++ ...+.+++++|+
T Consensus 141 ~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~~~~e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 141 YTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKA--KSRIYEYIKRTY 196 (471)
T ss_dssp EEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEECCHHHH--HHHHHHHHHHHH
T ss_pred EEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcCCcchH--HHHHHHHHHHHH
Confidence 55442 2 11123333321123478999999998775333 258888898886
No 20
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.65 E-value=2.7e-08 Score=95.12 Aligned_cols=116 Identities=16% Similarity=0.282 Sum_probs=77.9
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecC-----eEEEEeeeCCCc-e
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVAD-----KVTVTSKHNDNE-Q 121 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad-----~V~V~Tk~~~~~-~ 121 (224)
...|+|.|||+||+.+++...|.....+++. ......|.+|+|++++..+++ ++.|.|+..+.. .
T Consensus 69 ~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~---------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~ 139 (530)
T 2zbk_B 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY---------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRI 139 (530)
T ss_dssp EEEEEEECCSCCCCGGGSHHHHTSCCCSCCC---------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEE
T ss_pred eEEEEEEECCCCCCHHHHHHHhccccccCCc---------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEE
Confidence 3789999999999999999877654333221 122466899999999998887 699999876543 4
Q ss_pred eEEEe--CC--CC--ceEEeeCCCCCCCCCcEEEEEecCChHhhhcHHHHHHHHHHhcc
Q psy15682 122 YIWES--SA--GG--SFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQ 174 (224)
Q Consensus 122 ~~w~s--~~--~~--~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~~~~~~vk~likkys~ 174 (224)
+.|.. .. ++ .....+.......+||+|.+.++.+..++ ...+.+++++|+-
T Consensus 140 ~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~~~~e~--~~~i~~~l~~~Al 196 (530)
T 2zbk_B 140 YTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKA--KSRIYEYIKRTYI 196 (530)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEEEECCHHHH--HHHHHHHHHHHHH
T ss_pred EEEEEEecccccCCccccccccCCCCCCCCcEEEEEeccchhhH--HHHHHHHHHHHHH
Confidence 44432 11 11 22333321122468999999998875433 2578888888853
No 21
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.49 E-value=7.7e-08 Score=88.68 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=78.8
Q ss_pred cEEEEEeCCCCCCHHHHHH--------hhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCc
Q psy15682 49 KTLTIIDSGIGMTKADLVN--------NLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~--------~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~ 120 (224)
..|+|+|||.||+.+++.. .|... ..+.+ |- ........|..|+|+.++..++++++|.|++.+ .
T Consensus 64 ~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~-~~~~k-f~----~~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g-~ 136 (390)
T 1kij_A 64 GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTL-HSGGK-FE----QGAYKVSGGLHGVGASVVNALSEWTVVEVFREG-K 136 (390)
T ss_dssp SCEEEEECSSCCCCSEETTTTEEHHHHHHHSS-CEESG-GG----GSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT-E
T ss_pred CEEEEEEcCCCCCHHHhhhccccchhhheeee-eeccc-cc----CccccccCCCCCcceeeecccccceEEEEecCC-c
Confidence 4899999999999988754 34333 23332 31 111123568999999999999999999999754 3
Q ss_pred eeEEEeCCCC-ceEEeeCCCCC-CCCCcEEEEEecCChHhh----hcHHHHHHHHHHhcccc-ccceEEeeee
Q psy15682 121 QYIWESSAGG-SFTIKPDNSQP-LGRGTKIVLHMKEDQAEY----IEEKKIKEIVKKHSQFI-GYPIKLLVEK 186 (224)
Q Consensus 121 ~~~w~s~~~~-~~~v~~~~~~~-~~~GT~I~L~Lk~~~~e~----~~~~~vk~likkys~~i-~~PI~v~~~~ 186 (224)
.|......+. ...+.+..... ..+||+|++. ++...| ++...|.+.++.++-.- ..-|.++.+.
T Consensus 137 ~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~--Pd~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~ 207 (390)
T 1kij_A 137 HHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFK--PDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQ 207 (390)
T ss_dssp EEEEEEETTEEEEEEEEEEECGGGCCEEEEEEE--ECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGG
T ss_pred EEEEEEcCCcccccceeeccccCCCCCcEEEEE--EChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEEeCC
Confidence 4443333321 12233221111 4689999986 333333 34567888888876322 2345554443
No 22
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.32 E-value=4.5e-07 Score=76.47 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=76.5
Q ss_pred EEEecCccc----cccccccCCcCCCCCcEEEEEeCCCCCCHHHH--------HHhhchhccccchhHHHHHHcCCCCCc
Q psy15682 25 KIIPNKEEK----TLTIIDSGFIPNKEEKTLTIIDSGIGMTKADL--------VNNLGTTAKSGTKASMEALQAGADISM 92 (224)
Q Consensus 25 ~i~~n~~~a----~~~~i~~~~~~d~~~~~L~I~DnGiGMt~~eL--------~~~l~tIg~Sg~~~f~~~~~~~~~~~~ 92 (224)
+|+.|+-|| .+..|++-+..+ ..|+|+|||.||+.+++ .-.|...-.+|+ |-.. .....
T Consensus 24 Elv~NsiDa~~~g~a~~I~V~i~~~---g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK--~~~~----~~~~s 94 (201)
T 3fv5_A 24 EVIDNSVDEALAGHAKRVDVILHAD---QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK--FSNK----NYQFS 94 (201)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECTT---SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeCC---CEEEEEECCCCcCcccccccCcchhheeeeeeccccC--cCCC----ccccc
Confidence 366666665 234444444322 48999999999999873 222333333333 4221 11235
Q ss_pred cCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCCCCce--EEeeCC-CCCCCCCcEEEEEecCChHhh----hcHHHH
Q psy15682 93 IGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSF--TIKPDN-SQPLGRGTKIVLHMKEDQAEY----IEEKKI 165 (224)
Q Consensus 93 iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~~~~~--~v~~~~-~~~~~~GT~I~L~Lk~~~~e~----~~~~~v 165 (224)
.|..|+|+.|+-.++++++|.|++.+ ..|.....+ |.. .+.+.. ..+...||+|++. ++...| .+...|
T Consensus 95 ~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~-G~~~~~~~~~g~~~~~~~GT~V~f~--Pdr~~F~~~~~e~~~i 170 (201)
T 3fv5_A 95 GGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSVHFW--PDETFFDSPRFSVSRL 170 (201)
T ss_dssp -------CHHHHHTEEEEEEEEEETT-EEEEEEEET-TEEEEEEEEEEECCTTCCEEEEEEE--ECGGGSSCCCCCHHHH
T ss_pred CcccceecchhhcccceEEEEEEecC-ceEEEEEeC-CEEcccceecccCCCCCCCeEEEEE--ECHHHcCCCccCHHHH
Confidence 78899999999999999999999854 334333332 322 222211 1114689999996 332222 456788
Q ss_pred HHHHHHhcccc-ccceEEeee
Q psy15682 166 KEIVKKHSQFI-GYPIKLLVE 185 (224)
Q Consensus 166 k~likkys~~i-~~PI~v~~~ 185 (224)
.+.+++|+-.- ...|.+..+
T Consensus 171 ~~~l~~lA~l~pgv~~~l~~~ 191 (201)
T 3fv5_A 171 THVLKAKAVLCPGVEITFKDE 191 (201)
T ss_dssp HHHHHHHHHHSTTCEEEEEET
T ss_pred HHHHHHHHHhCCCCEEEEEec
Confidence 88899987332 234444443
No 23
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.30 E-value=6.3e-08 Score=94.20 Aligned_cols=127 Identities=20% Similarity=0.200 Sum_probs=78.1
Q ss_pred ccccCCcCCC-CCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCe-----E
Q psy15682 37 IIDSGFIPNK-EEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADK-----V 110 (224)
Q Consensus 37 ~i~~~~~~d~-~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~-----V 110 (224)
.|.+.+..+. +...|+|+|||.||+.+++...|.....++ + |. ......|..|+|+.++..+++. +
T Consensus 61 ~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~ats-k-f~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I 132 (621)
T 2q2e_B 61 DILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGS-R-FH------ALKQSRGQQGIGISAAVLYAQMTAGRHT 132 (621)
T ss_dssp EEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC----CC------CCC-CCSSSSHHHHHHHHHHHHHTCCCC
T ss_pred EEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCC-c-cc------cccccCCCceechhhhhHHHHHhCCCce
Confidence 3444443333 336899999999999999998775442222 2 21 1113458999999999888877 5
Q ss_pred EEEeeeCCC-ceeEEEe----C-CCCceE-EeeCCCCCCCCCcEEEEEecCChHhhhc--HHHHHHHHHHhccc
Q psy15682 111 TVTSKHNDN-EQYIWES----S-AGGSFT-IKPDNSQPLGRGTKIVLHMKEDQAEYIE--EKKIKEIVKKHSQF 175 (224)
Q Consensus 111 ~V~Tk~~~~-~~~~w~s----~-~~~~~~-v~~~~~~~~~~GT~I~L~Lk~~~~e~~~--~~~vk~likkys~~ 175 (224)
.|.|+..+. .++.|.. . +.+... .... .....+||+|++.++.+ |.. ...+.+++++|+-.
T Consensus 133 ~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~-~~~~~~GT~V~~~f~~~---~~~~~~~~I~~~L~~lAll 202 (621)
T 2q2e_B 133 KILSKTSPTAPAHYYELMINTSTNEPDILVDEVR-DWFRPHGTQIELEMRAA---YVKGRRQSIYEYLKATAIV 202 (621)
T ss_dssp EEEEECSSSSCEEEEECCCCSSSCSCCCCCEEEC-CCSCSSCCCEEEECSCC---CCCCSSSSSHHHHHHHHHH
T ss_pred eEEeeccCCccceEEEEecchhcccccccccccc-cCCCCCCCEEEEEecCc---cchHHHHHHHHHHHHHHhh
Confidence 999987653 4566654 2 222221 1221 12346899999998744 222 25667777776533
No 24
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.10 E-value=3e-06 Score=78.11 Aligned_cols=129 Identities=18% Similarity=0.226 Sum_probs=78.8
Q ss_pred cEEEEEeCCCCCCHHH--------HHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCc
Q psy15682 49 KTLTIIDSGIGMTKAD--------LVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~e--------L~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~ 120 (224)
..|+|+|||.||+.++ +.-.|.++-.+|+ |- ........|..|+|+.++=.++.+++|.|++.+ .
T Consensus 63 g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsK--f~----~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g-~ 135 (390)
T 1s16_A 63 QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK--FS----NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-Q 135 (390)
T ss_dssp SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESC--SS----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-E
T ss_pred CEEEEEECCCCcCcccccccCcchhhheeeeecccCC--cC----CCcccccCCccccchHHHHHhhcccEEEEEECC-c
Confidence 4899999999999888 5555655433443 31 111223578899999999999999999999754 4
Q ss_pred eeEEEeCCCCc-eEEeeCC-CCCCCCCcEEEEEecCChHhh----hcHHHHHHHHHHhcccc-ccceEEeeee
Q psy15682 121 QYIWESSAGGS-FTIKPDN-SQPLGRGTKIVLHMKEDQAEY----IEEKKIKEIVKKHSQFI-GYPIKLLVEK 186 (224)
Q Consensus 121 ~~~w~s~~~~~-~~v~~~~-~~~~~~GT~I~L~Lk~~~~e~----~~~~~vk~likkys~~i-~~PI~v~~~~ 186 (224)
.|..+...+.. -.+.+.. .....+||+|++. ++..-| ++...|.+.++.++-.- ..-|.++.+.
T Consensus 136 ~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~--Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~ 206 (390)
T 1s16_A 136 VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW--PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 (390)
T ss_dssp EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE--ECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred EEEEEEeCCcccccceecccccCCCCceEEEEE--ECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 44433333211 1122211 1112589999987 332222 45667888888876443 3345554443
No 25
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=97.92 E-value=6.5e-06 Score=76.19 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=73.6
Q ss_pred cEEEEEeCCCCCCHHH--------HHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCC-C
Q psy15682 49 KTLTIIDSGIGMTKAD--------LVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHND-N 119 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~e--------L~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~-~ 119 (224)
..|+|+|||.||+.++ +.-.|.++-.+|+ |-. ..-....|.-|+|+.++=.++.+++|.|++.. .
T Consensus 86 ~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsK--f~~----~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g 159 (400)
T 1zxm_A 86 NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSN--YDD----DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYK 159 (400)
T ss_dssp TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESC--CCG----GGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTT
T ss_pred CEEEEEECCCcccCccccccCccchhheeeeecccCC--CCC----CcccccCCccccceeeeEEeccceEEEEecCCCC
Confidence 7899999999999876 4444544433443 311 11123679999999999999999999998742 3
Q ss_pred ceeEEEeCCCCc-eEEeeCCCCCCCCCcEEEEEecCChHhh----hcHHH---HHHHHHHhcccc-ccceEEeee
Q psy15682 120 EQYIWESSAGGS-FTIKPDNSQPLGRGTKIVLHMKEDQAEY----IEEKK---IKEIVKKHSQFI-GYPIKLLVE 185 (224)
Q Consensus 120 ~~~~w~s~~~~~-~~v~~~~~~~~~~GT~I~L~Lk~~~~e~----~~~~~---vk~likkys~~i-~~PI~v~~~ 185 (224)
..|......+.. -.+.+.......+||+|++.-.. .-| ++... |.+.++.++-.- ..-|.++.+
T Consensus 160 ~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~Pd~--~iF~~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~de 232 (400)
T 1zxm_A 160 KMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDL--SKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGN 232 (400)
T ss_dssp EEEEEEEETTTTEECCCEEEECCSCCEEEEEEEECG--GGGTCSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTE
T ss_pred cEEEEEEccCccccCcceeccCCCCCccEEEEEECh--HHhCceeecHHHHHHHHHHHHHHHhhCCCcEEEEecC
Confidence 334433322211 11111101113579999987333 222 23334 556666654322 234555443
No 26
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=97.88 E-value=7.8e-06 Score=69.97 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=69.7
Q ss_pred cEEEEEeCCCCCCHHHH--------HHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCc
Q psy15682 49 KTLTIIDSGIGMTKADL--------VNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL--------~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~ 120 (224)
..|+|+|||.||+.+.. .-.|.++-.+|+ |- ...-...-|.-|+|+.++=.++++++|.+++.+ .
T Consensus 67 g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~K--fd----~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g-~ 139 (220)
T 4duh_A 67 NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK--FD----DNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-K 139 (220)
T ss_dssp SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSC--CC----TTC--------CCCHHHHHHTEEEEEEEEEETT-E
T ss_pred CcEEEEECCcCcccccccccCcchhhheeeecccCCC--cC----CCccccccCccceecchhcccccceEEEEEECC-E
Confidence 47999999999998753 223434433333 31 111235678999999999999999999998865 3
Q ss_pred eeEEEeCCC---CceEEeeCCCCCCCCCcEEEEEecCChHh---hhcHHHHHHHHHHhcccccc--ceEEee
Q psy15682 121 QYIWESSAG---GSFTIKPDNSQPLGRGTKIVLHMKEDQAE---YIEEKKIKEIVKKHSQFIGY--PIKLLV 184 (224)
Q Consensus 121 ~~~w~s~~~---~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e---~~~~~~vk~likkys~~i~~--PI~v~~ 184 (224)
.|..+...+ ....... ....+||+|+..-...... -++...|.+.++.++ |+.. -|.++.
T Consensus 140 ~~~~~f~~G~~~~~l~~~g---~~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 207 (220)
T 4duh_A 140 IHRQIYEHGVPQAPLAVTG---ETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRD 207 (220)
T ss_dssp EEEEEEETTEESSSCEEEE---ECSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEE
T ss_pred EEEEEecCCcCcCCceecc---ccCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEc
Confidence 333222221 1122111 1246899999873332110 135567888888887 4433 444444
No 27
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=97.85 E-value=2.6e-05 Score=67.03 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=73.0
Q ss_pred cEEEEEeCCCCCCHHH-------HHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCce
Q psy15682 49 KTLTIIDSGIGMTKAD-------LVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQ 121 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~e-------L~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~ 121 (224)
..|+|+|||.||+.++ +.-.|+++-.+|+ |-. ..-...-|.-|+|..++=.++.+++|.+++.+ ..
T Consensus 72 g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~K--fd~----~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g-~~ 144 (226)
T 4emv_A 72 GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGK--FGQ----GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG-AV 144 (226)
T ss_dssp SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------------CGGGCCHHHHHHTEEEEEEEEEETT-EE
T ss_pred CeEEEEEcCCCccccccccCceehheeEEeecccCc--cCc----cceEeccccccccchhhhhcccceEEEEEeCC-cE
Confidence 4799999999999987 4444544433333 422 12235679999999999999999999999855 33
Q ss_pred eEEEeCCC----CceE-EeeCCCCCCCCCcEEEEEecCChH--hhhcHHHHHHHHHHhcccc--ccceEEeee
Q psy15682 122 YIWESSAG----GSFT-IKPDNSQPLGRGTKIVLHMKEDQA--EYIEEKKIKEIVKKHSQFI--GYPIKLLVE 185 (224)
Q Consensus 122 ~~w~s~~~----~~~~-v~~~~~~~~~~GT~I~L~Lk~~~~--e~~~~~~vk~likkys~~i--~~PI~v~~~ 185 (224)
|..+...+ .... +.+. .+...||+|+..-..... .-++...|.+.++.++ |+ ...|.++.+
T Consensus 145 ~~q~f~~Gg~~~~~l~~ig~~--~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 214 (226)
T 4emv_A 145 YKQRFENGGKPVTTLKKIGTA--LKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTDK 214 (226)
T ss_dssp EEEEEETTTEESSCSEEEEEC--CTTCCEEEEEEEECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEET
T ss_pred EEEEECCCCEEcCCceEeccc--CCCCCCeEEEEEECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEec
Confidence 43222222 1122 2221 124689999987433221 1145667888888886 44 334555443
No 28
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.84 E-value=2.2e-05 Score=72.41 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=76.9
Q ss_pred cEEEEEeCCCCCCHHH--------HHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCc
Q psy15682 49 KTLTIIDSGIGMTKAD--------LVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~e--------L~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~ 120 (224)
..|+|+|||.||+.++ +.-.|.++-.+|+ |- ...-...-|.-|+|+.++=.++.+++|.|++.+ .
T Consensus 66 g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsK--f~----~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g-~ 138 (391)
T 1ei1_A 66 NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK--FD----DNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-K 138 (391)
T ss_dssp SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESC--SS----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-E
T ss_pred CEEEEEECCCCcccCcccccCcchHHHhheeccccCC--cC----CCcccccCCccccchHHHHHhcCeEEEEEEeCC-c
Confidence 4899999999999887 3334544434443 31 111223678899999999999999999999754 3
Q ss_pred eeEEEeCCC---CceEEeeCCCCCCCCCcEEEEEecCChH---hhhcHHHHHHHHHHhcccc-ccceEEeeee
Q psy15682 121 QYIWESSAG---GSFTIKPDNSQPLGRGTKIVLHMKEDQA---EYIEEKKIKEIVKKHSQFI-GYPIKLLVEK 186 (224)
Q Consensus 121 ~~~w~s~~~---~~~~v~~~~~~~~~~GT~I~L~Lk~~~~---e~~~~~~vk~likkys~~i-~~PI~v~~~~ 186 (224)
.|..+...+ ....+.. ....+||+|++.-..... .-++...|.+.++.++-.- ..-|.++.+.
T Consensus 139 ~~~~~~~~G~~~~~l~~~~---~~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~ 208 (391)
T 1ei1_A 139 IHRQIYEHGVPQAPLAVTG---ETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKR 208 (391)
T ss_dssp EEEEEEETTEESSCCEEEE---ECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred EEEEEEcCCcccccceecc---CcCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCC
Confidence 444333322 1121111 113689999987222110 1134567888888876443 3445555443
No 29
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=97.46 E-value=0.00017 Score=65.97 Aligned_cols=123 Identities=9% Similarity=0.157 Sum_probs=69.0
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCC
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSA 128 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~ 128 (224)
..|+|+|||.||+. ++. | ..-.+|+ |-. ..........| |+.|+=.++.+++|.|++.+ ..|..+...
T Consensus 62 g~I~V~DnGrGIp~-e~v--~-~lhagsK--f~~-~~~~~~y~vsG----Gls~vnalSs~l~v~t~r~g-~~~~~~~~~ 129 (369)
T 3cwv_A 62 GSIALFCTSRTVTA-ENL--V-RVATGAG--FLG-RPPGDGWGWDS----MLVVSLALSSRYQVDIWADG-RQWRVMGEH 129 (369)
T ss_dssp SCEEEEEEESSCCH-HHH--H-HHHTTTT--GGG-SSCCCSTTTTS----SHHHHHHTEEEEEEEEEETT-EEEEEEEET
T ss_pred CEEEEEECCCCcCH-hHe--e-eeecCCC--cCC-CcccccccccC----HHHHHHHhhceEEEEEEECC-CEEEEEEeC
Confidence 48999999999999 443 3 3333333 311 00001233344 77777778899999999854 344443332
Q ss_pred CCce-----EEeeCC--CCCCCCCcEEEEEecCChHhh----hcHHHHHHHHHHhcccc-ccceEEeeee
Q psy15682 129 GGSF-----TIKPDN--SQPLGRGTKIVLHMKEDQAEY----IEEKKIKEIVKKHSQFI-GYPIKLLVEK 186 (224)
Q Consensus 129 ~~~~-----~v~~~~--~~~~~~GT~I~L~Lk~~~~e~----~~~~~vk~likkys~~i-~~PI~v~~~~ 186 (224)
|.. ...+.. +....+||+|++. ++..-| .+...|.+.+++++-.- ..-|.++.+.
T Consensus 130 -G~~~~~~~~~~~l~~~g~~~~~GT~V~f~--Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~ 196 (369)
T 3cwv_A 130 -GHPQGEGAAVTPMEPMPVSAERGVRVHFV--PDATIFEVLAFDRARLSRRCNELAALAPGLRVSFADLQ 196 (369)
T ss_dssp -TEECTTCEEESSCCCCSSCCSEEEEEEEE--ECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred -CcccccccccCCceEecccCCCCCEEEEE--ECHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEEeCC
Confidence 221 022211 2224689999987 222222 45677888888886332 2345554443
No 30
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=97.44 E-value=0.0001 Score=68.48 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=65.7
Q ss_pred cEEEEEeCCCCCCHHHH--------HHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCc
Q psy15682 49 KTLTIIDSGIGMTKADL--------VNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL--------~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~ 120 (224)
..|+|+|||.||+.+.. .-.|..+-.+|+ |-. ..-...-|.-|+|..++=.++.+++|.+++.+ .
T Consensus 82 gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggK--fd~----~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG-k 154 (408)
T 3lnu_A 82 GSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGK--FNN----RNYTFSGGLHGVGVSVVNALSTKVELFIKREG-S 154 (408)
T ss_dssp SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------------CHHHHHHTEEEEEEEEEETT-E
T ss_pred CeEEEEEcCCCCCcccccccCCcchheEEEecccCCC--cCC----CceeecCCccccccceehhccCeEEEEEEECC-E
Confidence 58999999999998763 223444433333 421 11224678899999999999999999999865 3
Q ss_pred eeEEEeCCC---CceE-EeeCCCCCCCCCcEEEEEecCChH--hhhcHHHHHHHHHHhcccc-ccceEEeee
Q psy15682 121 QYIWESSAG---GSFT-IKPDNSQPLGRGTKIVLHMKEDQA--EYIEEKKIKEIVKKHSQFI-GYPIKLLVE 185 (224)
Q Consensus 121 ~~~w~s~~~---~~~~-v~~~~~~~~~~GT~I~L~Lk~~~~--e~~~~~~vk~likkys~~i-~~PI~v~~~ 185 (224)
.|..+...+ .... +.+. .+...||+|+..-..... .-++...|.+.+++++=.. ..-|.++.+
T Consensus 155 ~~~q~f~~G~~~~~l~~ig~~--~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~de 224 (408)
T 3lnu_A 155 EHRMEFRDGNAASKLEVVGTV--GKKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHDE 224 (408)
T ss_dssp EEEEEEETTEECSCCEEEEEC--CTTCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEET
T ss_pred EEEEEECCCEECCCceEeccC--cCCCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 333222221 1122 2221 123689999986332211 1145667777777775333 335555543
No 31
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.92 E-value=0.00044 Score=64.28 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=60.2
Q ss_pred cEEEEEeCCCCCCHHHHHH--------hhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeC-CC
Q psy15682 49 KTLTIIDSGIGMTKADLVN--------NLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHN-DN 119 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~--------~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~-~~ 119 (224)
..|+|+|||.||+.+.... .|+++-.+|+ |- .+.-.-.-|.-|+|...+=.++.+++|.+++. +.
T Consensus 98 ~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgK--fd----~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdG 171 (418)
T 1pvg_A 98 HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSN--YD----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 171 (418)
T ss_dssp TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESC--CC----TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTT
T ss_pred CEEEEEECCCcccCcccccCCcccceEEEEEEecccc--cC----CCceeccCCccceeeeeeeeccceEEEEEEECCCC
Confidence 6899999999998765322 3544444443 31 11123457999999988889999999999963 33
Q ss_pred ceeE--EEeCC--CCceEEeeCCCCCCCCCcEEEEEecCC
Q psy15682 120 EQYI--WESSA--GGSFTIKPDNSQPLGRGTKIVLHMKED 155 (224)
Q Consensus 120 ~~~~--w~s~~--~~~~~v~~~~~~~~~~GT~I~L~Lk~~ 155 (224)
..|. |+... ...-.+... .....||+|+..-...
T Consensus 172 k~y~q~f~~G~~~~~~p~i~~~--~~~~tGT~V~F~PD~~ 209 (418)
T 1pvg_A 172 QKYVQKWENNMSICHPPKITSY--KKGPSYTKVTFKPDLT 209 (418)
T ss_dssp EEEEEEEETTTTEECCCEEEEC--CSSCCEEEEEEEECGG
T ss_pred cEEEEEEEcCCCccCCCeeccc--CCCCCceEEEEEEChH
Confidence 3343 43210 001123322 1235899999875543
No 32
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=96.39 E-value=0.0043 Score=51.96 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=59.7
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeCCCceeEEEeCC
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNEQYIWESSA 128 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~~~~~~~w~s~~ 128 (224)
..|+|.|||.||+.+. -..|+.... +.+ |+ ..++=.++.+++|.|++.+ ..|..+...
T Consensus 63 g~i~V~DnG~Gip~~~-------h~~~~~~~~-e~i-----------~t--~SvVNALS~~l~v~v~r~g-~~~~~~f~~ 120 (198)
T 3ttz_A 63 NWIKVTDNGRGIPVDI-------QEKMGRPAV-EVI-----------LT--SSVVNALSQDLEVYVHRNE-TIYHQAYKK 120 (198)
T ss_dssp GEEEEEECSSCCCCSB-------CTTTSSBHH-HHH-----------HH--TCHHHHTEEEEEEEEEETT-EEEEEEEET
T ss_pred CeEEEEECCCCccccc-------cCcCCCccc-ccc-----------ce--eEehhhhcCeEEEEEEECC-cEEEEEEeC
Confidence 4899999999999861 122332211 111 11 2122336689999998865 334333322
Q ss_pred C---CceEEeeCCCCCCCCCcEEEEEecCChHhh-----hcHHHHHHHHHHhccccccceEEeee
Q psy15682 129 G---GSFTIKPDNSQPLGRGTKIVLHMKEDQAEY-----IEEKKIKEIVKKHSQFIGYPIKLLVE 185 (224)
Q Consensus 129 ~---~~~~v~~~~~~~~~~GT~I~L~Lk~~~~e~-----~~~~~vk~likkys~~i~~PI~v~~~ 185 (224)
+ ....+.. .....||+|+.. ++..-| ++...|.+.++.++ |+..-|.+..+
T Consensus 121 G~~~~~l~~i~---~~~~~GT~V~F~--Pd~~iF~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~ 179 (198)
T 3ttz_A 121 GVPQFDLKEVG---TTDKTGTVIRFK--ADGEIFTETTVYNYETLQQRIRELA-FLNKGIQITLR 179 (198)
T ss_dssp TEESSCCEEEE---ECSCCEEEEEEE--ECTTTCCSCCCCCHHHHHHHHHHHH-HHSTTCEEEEE
T ss_pred CEECCCceecc---CCCCCCcEEEEE--ECHHHhccCCccCHHHHHHHHHHHh-hcCCCCEEEEE
Confidence 2 1111111 123689999987 333233 46678888888887 44333444333
No 33
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=96.39 E-value=0.0026 Score=48.64 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEee
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSK 115 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk 115 (224)
..|.|.|||.||+ .+.+.|... .++. ...+..|+|++-+-.+++++.+.+.
T Consensus 75 ~~i~V~D~G~g~~--~~~~~~~~~-~~~~-------------~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 75 VHLTVRDEGVGIP--DIEEARQPL-FTTK-------------PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp EEEEEEECSSCCS--CHHHHTCCC---------------------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred EEEEEEECCCCcC--hHHHhhccc-ccCC-------------CCCCCCcchHHHHHHHHheEEEEeC
Confidence 8899999999999 555544211 1111 1224579999888777775555443
No 34
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=95.88 E-value=0.0046 Score=49.80 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=13.0
Q ss_pred CcEEEEEeCCCCCCHHHH
Q psy15682 48 EKTLTIIDSGIGMTKADL 65 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL 65 (224)
...|.|.|||+||+.+.+
T Consensus 161 ~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 161 EVVITVSDDGTFKGEENS 178 (218)
T ss_dssp EEEEEEEESSCCCC----
T ss_pred EEEEEEEECCcCCCCCCC
Confidence 388999999999999876
No 35
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=95.78 E-value=0.012 Score=52.93 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=29.2
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA 107 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva 107 (224)
..|.|.|+|.||+.+++...|-.. .++.... .. .......+.+|+|+.-|-.++
T Consensus 271 v~i~V~D~G~GI~~~~~~~iF~~f-~~~~~~~--~~--~~~~~~~~G~GLGL~i~~~i~ 324 (394)
T 2btz_A 271 LSIKMSDRGGGVPLRKIERLFSYM-YSTAPTP--QP--GTGGTPLAGFGYGLPISRLYA 324 (394)
T ss_dssp EEEEEEECSCCCCHHHHHHHTCTT-TTCCC------------------CCHHHHHHHHH
T ss_pred EEEEEEeCCCCCCHHHHHHHhccc-ccCCCCC--Cc--ccCCCCCCCccCCHHHHHHHH
Confidence 889999999999999998866432 2221100 00 001234567899997665443
No 36
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=95.75 E-value=0.015 Score=52.54 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=33.0
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
..|.|.|||.||+.+++.+.|-.. .++...- . .........+.+|+|+.-|-.+
T Consensus 283 v~i~V~D~G~GI~~e~~~~if~~f-~~~~~~~--~-~~~~~~~~~~G~GLGL~Ivr~i 336 (407)
T 2q8g_A 283 LTVKMSDRGGGVPLRKIDRLFNYM-YSTAPRP--R-VETSRAVPLAGFGYGLPISRLY 336 (407)
T ss_dssp EEEEEEECSCCCCHHHHGGGGCTT-TTCCCCC--C-SSCCSCCCSSCTTCHHHHHHHH
T ss_pred EEEEEEecCCCCCHHHHHHHhCcc-ccCCCCC--C-ccccCCCCCCCcCCCHHHHHHH
Confidence 889999999999999988765332 2211100 0 0001223557899999766444
No 37
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=95.71 E-value=0.012 Score=53.01 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=33.3
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA 107 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva 107 (224)
..|.|.|+|.||+.+++.+.|-.. .++...- .+ ........+.+|+|+.-|-.++
T Consensus 270 v~i~V~D~G~GI~~~~~~~if~~f-~~~~~~~--~~-~~~~~~~~~G~GLGL~i~~~i~ 324 (394)
T 2e0a_A 270 LTIKISDRGGGVPLRIIDRLFSYT-YSTAPTP--VM-DNSRNAPLAGFGYGLPISRLYA 324 (394)
T ss_dssp EEEEEEECSCCCCGGGHHHHTSTT-CCSSCCC---------CCCSSCSSCHHHHHHHHH
T ss_pred EEEEEEeCCCCcCHHHHHHHhCcC-ccCCCCC--Cc-CcCCCCCCCCcccCHHHHHHHH
Confidence 899999999999999998866432 2221100 00 0012234577999997664443
No 38
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=95.47 E-value=0.015 Score=52.92 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=30.7
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA 107 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva 107 (224)
...|.|.|+|.||+.+++.+.|-.. .+.... ..+. .......+.+|+|+.-|-.++
T Consensus 293 ~v~I~V~D~G~GI~~e~l~~iF~~f-~~~~~~--~~~~-~~~~~~~~G~GLGL~I~k~iv 348 (419)
T 1y8o_A 293 DLSIKISDLGGGVPLRKIDRLFNYM-YSTAPR--PSLE-PTRAAPLAGFGYGLPISRLYA 348 (419)
T ss_dssp EEEEEEEECSCCCCHHHHGGGGCTT-TC----------------CC--CTTHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHhCcc-cccCCC--CCcc-ccCCCCcCCeecCHHHHHHHH
Confidence 4899999999999999998866432 222110 0000 011234567999997664443
No 39
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.018 Score=59.78 Aligned_cols=116 Identities=12% Similarity=0.146 Sum_probs=60.0
Q ss_pred cEEEEEeCCCCCCHHH--------HHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEeeeC-CC
Q psy15682 49 KTLTIIDSGIGMTKAD--------LVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHN-DN 119 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~e--------L~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~Tk~~-~~ 119 (224)
..|+|+|||.||+-+. +.=.|+++-.+|+ |- .+.-.-.-|.-|+|..-+=.++.++.|.+... +.
T Consensus 93 ~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgK--Fd----~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~G 166 (1177)
T 4gfh_A 93 HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSN--YD----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166 (1177)
T ss_dssp TEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESC--CC----CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTT
T ss_pred CEEEEEecCCcccccccCCCCCEeeeeeccccccccC--cC----CCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCC
Confidence 8999999999998531 2222444434443 41 11222356899999866666777776766533 22
Q ss_pred ceeE--EEeCCC--CceEEeeCCCCCCCCCcEEEEEecCChH--hhhcHHHHHHHHHHh
Q psy15682 120 EQYI--WESSAG--GSFTIKPDNSQPLGRGTKIVLHMKEDQA--EYIEEKKIKEIVKKH 172 (224)
Q Consensus 120 ~~~~--w~s~~~--~~~~v~~~~~~~~~~GT~I~L~Lk~~~~--e~~~~~~vk~likky 172 (224)
..|. |+.... ..-.+... .....||+|+..-..... .-++.+.+....++.
T Consensus 167 k~y~q~f~~g~~~~~~~~i~~~--~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 167 QKYVQKWENNMSICHPPKITSY--KKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRV 223 (1177)
T ss_dssp EEEEEEEETTTTEECCCEEEEC--CSSCCCEEEEEEECHHHHTCSSCCHHHHHHHHHHH
T ss_pred EEEEEEEECCcccCCCCeeecC--CCCCCceEEEEEeCHHhcCCcEeCHHHHHHHHHHH
Confidence 3232 432211 11222221 233579999765443211 013444554444443
No 40
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=95.36 E-value=0.019 Score=47.45 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=30.1
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 46 KEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 46 ~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
.+...|.|.|||.||+.+.+.+.|... .+ ...+..|+|++.+-.+
T Consensus 185 ~~~~~i~V~D~G~Gi~~~~~~~if~~~-~~---------------~~~~g~GlGL~i~~~~ 229 (268)
T 4ew8_A 185 LGEVRLDVSDTGRGVPFHVQAHIFDRF-VG---------------RDRGGPGLGLALVKAL 229 (268)
T ss_dssp SSEEEEEEEESSCCCCHHHHTTTTSTT-CC---------------CSSCCCTTHHHHHHHH
T ss_pred CCEEEEEEEcCCCCCCHHHHHHHHHHH-hc---------------CCCCCCcccHHHHHHH
Confidence 334899999999999999887655221 11 1124679998765443
No 41
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=95.27 E-value=0.021 Score=46.25 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 46 KEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 46 ~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
++...|.|.|||.||+.+++.+.|... .+.+ ..+..|+|++.+-.+
T Consensus 153 ~~~~~i~i~D~G~gi~~~~~~~if~~~-~~~~--------------~~~g~GlGL~i~~~i 198 (244)
T 3d36_A 153 NGRVLIRIADTGVGMTKEQLERLGEPY-FTTK--------------GVKGTGLGMMVVYRI 198 (244)
T ss_dssp TTEEEEEEEECSSCCCHHHHHHTTSTT-CCSS--------------GGGCCSCHHHHHHHH
T ss_pred CCEEEEEEEecCCCCCHHHHHHHhccc-ccCC--------------CCCCcchhHHHHHHH
Confidence 334889999999999999988765322 1111 124579998776544
No 42
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=95.27 E-value=0.011 Score=44.76 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 45 NKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 45 d~~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
+++...|.|.|||.||+.+++...|... .+.. ...+..|+|++.+-.+
T Consensus 71 ~~~~~~i~i~D~G~gi~~~~~~~~f~~~-~~~~-------------~~~~g~GlGL~i~~~~ 118 (152)
T 1id0_A 71 TDEHLYIVVEDDGPGIPLSKREVIFDRG-QRVD-------------TLRPGQGVGLAVAREI 118 (152)
T ss_dssp CSSCEEEEEEESSSCCCGGGTTGGGSCC-CCTT-------------CCCTTCCSCHHHHHHH
T ss_pred cCCEEEEEEEeCCCCcCHHHHHHHhccc-eecc-------------CCCCCcccCHHHHHHH
Confidence 3445889999999999998887654321 1111 1125688998765443
No 43
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=95.25 E-value=0.0095 Score=49.40 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=29.1
Q ss_pred CCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 47 EEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 47 ~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
+...|.|.|||+||+.+++...|-... ++... .....+..|+|++-|-.+
T Consensus 172 ~~~~i~V~D~G~Gi~~~~~~~if~~f~-~~~~~---------~~~~~~G~GLGL~i~~~i 221 (258)
T 2c2a_A 172 GGVLIIVEDNGIGIPDHAKDRIFEQFY-RVDSS---------LTYEVPGTGLGLAITKEI 221 (258)
T ss_dssp TEEEEEEEECSSCCCGGGTTGGGSTTC-CCC------------------CCCTHHHHHHH
T ss_pred CeEEEEEEecCCCCCHHHHHhhccccc-cCCCC---------CCCCCCCcchHHHHHHHH
Confidence 347899999999999998877654322 11110 011224589999766443
No 44
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=95.23 E-value=0.018 Score=45.55 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=16.6
Q ss_pred cEEEEEeCCCCCCHHHHH
Q psy15682 49 KTLTIIDSGIGMTKADLV 66 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~ 66 (224)
..|.|.|||.||+.+++.
T Consensus 92 ~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 92 VVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp EEEEEEECSSCCCHHHHH
T ss_pred EEEEEEeCCCCcCHHHHh
Confidence 889999999999999873
No 45
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=95.21 E-value=0.017 Score=43.84 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=27.1
Q ss_pred CCcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 47 EEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 47 ~~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
+...|.|.|||.||+.+++.+.|....++.+ ...+..|+|++.+-.+
T Consensus 76 ~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~-------------~~~~g~GlGL~i~~~~ 122 (150)
T 1ysr_A 76 AGVEIAIDDNGSGVPEGERQVVFERFSRGST-------------ASHSGSGLGLALVAQQ 122 (150)
T ss_dssp TEEEEEEEESSSCCCGGGHHHHHTSCC------------------------CCCHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHhcccccCCC-------------CCCCCCCcCHHHHHHH
Confidence 3488999999999999998876533211111 1124578998766444
No 46
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=95.19 E-value=0.012 Score=45.34 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=31.2
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeec
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVA 107 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmva 107 (224)
...|.|.|||.||+.+++...|... .++.. ....+..|+|++.+-.++
T Consensus 77 ~~~i~i~D~G~gi~~~~~~~~f~~f-~~~~~-----------~~~~~g~GlGL~i~~~~~ 124 (161)
T 1bxd_A 77 RAWFQVEDDGPGIAPEQRKHLFQPF-VRGDS-----------ARTISGTGLGLAIVQRIV 124 (161)
T ss_dssp EEEEEEEEESSCSCTTGGGCSSCCC-CCCSC-----------CCCCCCCSCCCCTTHHHH
T ss_pred EEEEEEEeCCCCCCHHHHHHhCCCc-eeCCC-----------CCCCCCcccCHHHHHHHH
Confidence 3789999999999998877654321 22111 112356899997765443
No 47
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=94.74 E-value=0.011 Score=44.53 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=19.3
Q ss_pred CCcEEEEEeCCCCCCHHHHHHhh
Q psy15682 47 EEKTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 47 ~~~~L~I~DnGiGMt~~eL~~~l 69 (224)
+...|.|.|||.||+.+++...|
T Consensus 78 ~~~~i~i~D~G~g~~~~~~~~~f 100 (152)
T 3a0y_A 78 TKVRVSVWNSGPPIPEELKEKIF 100 (152)
T ss_dssp SEEEEEEEEESCCCCGGGTTGGG
T ss_pred CEEEEEEEeCCCCcCHHHHHhHh
Confidence 34789999999999999887655
No 48
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=94.53 E-value=0.018 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCCCHHHHHHhhc
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLG 70 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~ 70 (224)
..|.|.|||.||+.+++.+.|-
T Consensus 279 v~i~V~D~G~GI~~~~~~~iF~ 300 (388)
T 1gkz_A 279 LIIRISDRGGGIAHKDLDRVMD 300 (388)
T ss_dssp EEEEEECCSCCCCTTTTTTTTS
T ss_pred EEEEEEEeCCCcCHHHHHHhcC
Confidence 8899999999999998877553
No 49
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=94.46 E-value=0.016 Score=45.32 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
...|.|.|||.||+.+.+...|.... ++.. ......+..|+|++.+-.+
T Consensus 77 ~~~i~V~D~G~gi~~~~~~~lf~~~~-~~~~---------~~~~~~~g~GlGL~iv~~~ 125 (177)
T 3sl2_A 77 LLYISVKDEGIGIPKKDVEKVFDRFY-RVDK---------ARTRKLGGTGLGLAIAKEM 125 (177)
T ss_dssp EEEEEEECCSSCCCTTTTTTTTSTTC-CCC---------------CCCCCCHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHhhhc-cCCC---------CCCCCCCCCCcCHHHHHHH
Confidence 37899999999999988876553322 2111 0112345789998765443
No 50
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=94.36 E-value=0.02 Score=45.65 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=13.6
Q ss_pred EEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeee
Q psy15682 51 LTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMV 106 (224)
Q Consensus 51 L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmv 106 (224)
|.|.|||.||+.+++...|-.. .+.. ....+..|+|++.+-.+
T Consensus 148 i~V~D~G~Gi~~~~~~~if~~f-~~~~------------~~~~~g~GlGL~i~~~i 190 (222)
T 3jz3_A 148 FIVRDNGPGVTPEALARIGERF-YRPP------------GQTATGSGLGLSIVQRI 190 (222)
T ss_dssp EEEECSCC---------------------------------------CTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhh-ccCC------------CCCCCcccccHHHHHHH
Confidence 9999999999999988765322 1111 11224679998765433
No 51
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=93.72 E-value=0.015 Score=44.07 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=11.3
Q ss_pred cEEEEEeCCCCCCHHHHHHhh
Q psy15682 49 KTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l 69 (224)
..|.|.|||.||+.+++...|
T Consensus 92 ~~i~v~D~G~gi~~~~~~~lf 112 (160)
T 1r62_A 92 ARIDVEDNGPGIPPHLQDTLF 112 (160)
T ss_dssp EEEEEEEECTTC---------
T ss_pred EEEEEEeCCCCCCHHHHHHhh
Confidence 689999999999999887755
No 52
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=92.09 E-value=0.15 Score=45.77 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=34.5
Q ss_pred cEEEEEeCCCCCCHHHHHHh--------------------hchhccccchhHHHHHHcCCCCCccCCccceeeeEee---
Q psy15682 49 KTLTIIDSGIGMTKADLVNN--------------------LGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYM--- 105 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~--------------------l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fm--- 105 (224)
..|.|.|||.||+.+.+... +..|+..+-+. .......+..|+|+.-+-.
T Consensus 151 v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst-------~~~~~~~~G~GlGL~iv~~~v~ 223 (379)
T 1b3q_A 151 VVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFST-------KEKVSEVSGRGVGMDVVKNVVE 223 (379)
T ss_dssp EEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------------------CCCSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCcc-------CCccCCCCCccccHHHHHHHHH
Confidence 78999999999999988431 12233332110 0111234567999877643
Q ss_pred -ecCeEEEEeeeC
Q psy15682 106 -VADKVTVTSKHN 117 (224)
Q Consensus 106 -vad~V~V~Tk~~ 117 (224)
++-++.|.|...
T Consensus 224 ~~gG~i~v~s~~g 236 (379)
T 1b3q_A 224 SLNGSMGIESEKD 236 (379)
T ss_dssp HTTCEEEEEEETT
T ss_pred HCCCEEEEEEcCC
Confidence 357788888754
No 53
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=91.46 E-value=0.053 Score=46.27 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=19.0
Q ss_pred CCcEEEEEeCCCCCCHHHHHHhh
Q psy15682 47 EEKTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 47 ~~~~L~I~DnGiGMt~~eL~~~l 69 (224)
+...|.|.|||+||+.+.+.+.|
T Consensus 275 ~~~~i~v~D~G~Gi~~~~~~~if 297 (349)
T 3a0r_A 275 TKVRVSVWNSGPPIPEELKEKIF 297 (349)
T ss_dssp TEEEEEEEEESCCCCGGGGTTTS
T ss_pred CEEEEEEEECCCCCChHHHhhcC
Confidence 34789999999999998876654
No 54
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=89.97 E-value=0.094 Score=38.98 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.8
Q ss_pred cEEEEEeCCCCCCHHHH
Q psy15682 49 KTLTIIDSGIGMTKADL 65 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL 65 (224)
..|.|.|||.||+.+.+
T Consensus 72 ~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 72 VVITVSDDGTFKGEENS 88 (128)
T ss_dssp EEEEEEESSCCCSCSSC
T ss_pred EEEEEEECCcCcCcccC
Confidence 88999999999987654
No 55
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=76.19 E-value=1.6 Score=31.57 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.8
Q ss_pred cEEEEEeCCCCCCHHH
Q psy15682 49 KTLTIIDSGIGMTKAD 64 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~e 64 (224)
..|+|.|||.||+.+.
T Consensus 74 ~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 74 LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp EEEEEEECCCCCTTTT
T ss_pred EEEEEecCCCCCCccc
Confidence 7899999999998654
No 56
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=70.53 E-value=0.79 Score=33.16 Aligned_cols=16 Identities=19% Similarity=0.549 Sum_probs=14.2
Q ss_pred cEEEEEeCCCCCCHHH
Q psy15682 49 KTLTIIDSGIGMTKAD 64 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~e 64 (224)
..|.|+|||.||+.+.
T Consensus 70 ~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 70 VRVEVVDDGVGISGDI 85 (124)
T ss_dssp EEEEEEECCCSSCGGG
T ss_pred EEEEEEECCCCCCccc
Confidence 6899999999998765
No 57
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=69.10 E-value=5.8 Score=32.67 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=16.3
Q ss_pred CcEEEEEeCCCC--CCHHHHHHhh
Q psy15682 48 EKTLTIIDSGIG--MTKADLVNNL 69 (224)
Q Consensus 48 ~~~L~I~DnGiG--Mt~~eL~~~l 69 (224)
...|.|.|+|.| |+++.+...|
T Consensus 178 ~~~i~V~D~G~Gi~i~~~~~~~~f 201 (247)
T 4fpp_A 178 RFSIIADAKGPRARLRPEVLAGLK 201 (247)
T ss_dssp EEEEEEEEESTTCCCCHHHHHHHT
T ss_pred EEEEEEEEcCCCCCCCHHHHHHhc
Confidence 388999999966 6776666544
No 58
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=51.57 E-value=6 Score=32.32 Aligned_cols=22 Identities=9% Similarity=-0.121 Sum_probs=16.9
Q ss_pred CcEEEEEeCCCCCCHHHHHHhh
Q psy15682 48 EKTLTIIDSGIGMTKADLVNNL 69 (224)
Q Consensus 48 ~~~L~I~DnGiGMt~~eL~~~l 69 (224)
...+.|.|+|.|++.+.+...|
T Consensus 145 ~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 145 QLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp SCEEEEEEESCBSCGGGCC---
T ss_pred EEEEEEEeCCCCCCHHHHHHHH
Confidence 4899999999999998766544
No 59
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=41.93 E-value=15 Score=32.72 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCCHHHHHHhhchhccccchhHHHHHHcCCCCCccCCccceeeeEeeecCeEEEEe
Q psy15682 49 KTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTS 114 (224)
Q Consensus 49 ~~L~I~DnGiGMt~~eL~~~l~tIg~Sg~~~f~~~~~~~~~~~~iGqFGIGf~S~Fmvad~V~V~T 114 (224)
-.|.|.|+|.|++.. + . -+.-|.|++-+=.+++++.+.+
T Consensus 334 l~i~V~D~G~g~~~~-----------~-~---------------~~~~G~GL~lv~~l~~~~~~~~ 372 (399)
T 3ke6_A 334 VRASVIDRGQWKDHR-----------D-G---------------ARGRGRGLAMAEALVSEARIMH 372 (399)
T ss_dssp EEEEEEESCBC---------------------------------------CHHHHHTTSSEEEEEE
T ss_pred EEEEEEECCCCCCCC-----------C-C---------------CCCCCcHHHHHHHHHHheeeEE
Confidence 789999999999865 0 0 0234667766666778777643
No 60
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=38.05 E-value=24 Score=26.76 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=33.4
Q ss_pred CcEEEEEecCChHhhhcHHHHHHHHHHhccccccceEEeeee
Q psy15682 145 GTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK 186 (224)
Q Consensus 145 GT~I~L~Lk~~~~e~~~~~~vk~likkys~~i~~PI~v~~~~ 186 (224)
|-.|.|+|++...++.++.....|-.-.+.++..||.|..+-
T Consensus 52 ~~~~~L~l~~~~~hL~~~~~~~~L~~ALs~~~G~~v~L~i~~ 93 (128)
T 2aya_A 52 DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVE 93 (128)
T ss_dssp SSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHSSCCEEEEEE
T ss_pred CCEEEEEECHHHHHhCCHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 456888998888777888888888888888888888887653
No 61
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=28.24 E-value=33 Score=29.42 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=4.1
Q ss_pred cEEEEEeCCC
Q psy15682 49 KTLTIIDSGI 58 (224)
Q Consensus 49 ~~L~I~DnGi 58 (224)
..|.+..|++
T Consensus 125 ~~L~L~~n~l 134 (386)
T 2ca6_A 125 EHLYLHNNGL 134 (386)
T ss_dssp CEEECCSSCC
T ss_pred CEEECcCCCC
Confidence 3344444443
No 62
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=23.08 E-value=31 Score=24.30 Aligned_cols=14 Identities=43% Similarity=0.762 Sum_probs=12.3
Q ss_pred CCCCHHHHHHhhch
Q psy15682 58 IGMTKADLVNNLGT 71 (224)
Q Consensus 58 iGMt~~eL~~~l~t 71 (224)
+|||++++...||+
T Consensus 15 ~GmTk~qV~~lLG~ 28 (88)
T 2yh9_A 15 VGMTQQQVAYALGT 28 (88)
T ss_dssp TTCBHHHHHHHHCS
T ss_pred CCCCHHHHHHHcCC
Confidence 79999999998764
No 63
>4hu2_A Probable conserved lipoprotein LPPS; cell-WALL, transpeptidase, immunoglobuline-fold, peptidoglyc unknown function; 1.46A {Mycobacterium tuberculosis}
Probab=20.46 E-value=1.6e+02 Score=24.14 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=38.5
Q ss_pred CC-ccceeeeEeeec----------CeEEEEeeeCCCceeEEEeCCCCceEEeeCCCCCCCCCcEEEEEecC
Q psy15682 94 GQ-FGVGFYSAYMVA----------DKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKE 154 (224)
Q Consensus 94 Gq-FGIGf~S~Fmva----------d~V~V~Tk~~~~~~~~w~s~~~~~~~v~~~~~~~~~~GT~I~L~Lk~ 154 (224)
|+ .|+|.--.+.+. ..+.|.|...-...|.|-++ ..+..+|. +.-..||+|++.++-
T Consensus 109 g~tVGVg~Pv~v~F~~pV~draave~ai~Vtt~p~v~G~~~W~~d--~~v~~RP~--~yW~~gT~Vtv~~~l 176 (198)
T 4hu2_A 109 GEVVGVGEPVAIRFDENIADRGAAEKAIKITTNPPVEGAFYWLNN--REVRWRPE--HFWKPGTAVDVAVNT 176 (198)
T ss_dssp TCEECTTCCEEEEESSCCSCHHHHHHTEEEEEESCCCEEEEESSS--SEEEEEES--SCCCTTEEEEEEECC
T ss_pred CCEeeCCceEEEECCCCCCChHHhhcccEEecCCCCcEEEEECCC--CEEEEecc--ccCCCCCEEEEEEEC
Confidence 44 788865554432 35788877765667899654 45666663 455789999999873
Done!