RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15682
(224 letters)
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP:
d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 327 bits (841), Expect = e-115
Identities = 141/198 (71%), Positives = 168/198 (84%), Gaps = 16/198 (8%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIRYE+LTDPS+L+S K LHI +IPNK+++TLTI+D+G IGM
Sbjct: 83 ALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG----------------IGM 126
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120
TKADL+NNLGT AKSGTKA MEALQAGADISMIGQFGVGFYSAY+VA+KVTV +KHND+E
Sbjct: 127 TKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDE 186
Query: 121 QYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPI 180
QY WESSAGGSFT++ D +P+GRGTK++LH+KEDQ EY+EE++IKEIVKKHSQFIGYPI
Sbjct: 187 QYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPI 246
Query: 181 KLLVEKEREKELSEDEEE 198
L VEKER+KE+S+DE E
Sbjct: 247 TLFVEKERDKEVSDDEAE 264
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 326 bits (837), Expect = e-114
Identities = 142/198 (71%), Positives = 168/198 (84%), Gaps = 16/198 (8%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIRYESLTDPS+L+S K LHI +IPNK+++TLTI+D+G IGM
Sbjct: 47 ALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG----------------IGM 90
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120
TKADL+NNLGT AKSGTKA MEALQAGADISMIGQFGVGFYSAY+VA+KVTV +KHND+E
Sbjct: 91 TKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDE 150
Query: 121 QYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPI 180
QY WESSAGGSFT++ D +P+GRGTK++LH+KEDQ EY+EE++IKEIVKKHSQFIGYPI
Sbjct: 151 QYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPI 210
Query: 181 KLLVEKEREKELSEDEEE 198
L VEKER+KE+S+DE E
Sbjct: 211 TLFVEKERDKEVSDDEAE 228
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 324 bits (834), Expect = e-114
Identities = 142/198 (71%), Positives = 168/198 (84%), Gaps = 16/198 (8%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIRYESLTDPS+L+S K LHI +IPNK+++TLTI+D+G IGM
Sbjct: 75 ALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG----------------IGM 118
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120
TKADL+NNLGT AKSGTKA MEALQAGADISMIGQFGVGFYSAY+VA+KVTV +KHND+E
Sbjct: 119 TKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDE 178
Query: 121 QYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPI 180
QY WESSAGGSFT++ D +P+GRGTK++LH+KEDQ EY+EE++IKEIVKKHSQFIGYPI
Sbjct: 179 QYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPI 238
Query: 181 KLLVEKEREKELSEDEEE 198
L VEKER+KE+S+DE E
Sbjct: 239 TLFVEKERDKEVSDDEAE 256
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding,
phosphoprotein, stress respo nucleotide-binding; HET:
RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A*
2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A*
2ygf_A* 2akp_A
Length = 220
Score = 322 bits (828), Expect = e-113
Identities = 117/192 (60%), Positives = 147/192 (76%), Gaps = 17/192 (8%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIRY+SL+DP +LE+E +L I+I P E+K L I DSG IGM
Sbjct: 41 ALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSG----------------IGM 84
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120
TKA+L+NNLGT AKSGTKA MEAL AGAD+SMIGQFGVGFYS ++VAD+V V SK ND+E
Sbjct: 85 TKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDE 144
Query: 121 QYIWESSAGGSFTIKPDNS-QPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYP 179
QYIWES+AGGSFT+ D + +GRGT + L +K+DQ EY+EEK+IKE++K+HS+F+ YP
Sbjct: 145 QYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYP 204
Query: 180 IKLLVEKEREKE 191
I+L+V KE EKE
Sbjct: 205 IQLVVTKEVEKE 216
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone
inhibitor complex; HET: 7PP; 2.20A {Homo sapiens}
Length = 239
Score = 321 bits (826), Expect = e-113
Identities = 133/197 (67%), Positives = 160/197 (81%), Gaps = 16/197 (8%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIRYESLTDPS+L+S K L I IIPN +E+TLT++D+G IGM
Sbjct: 54 ALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTG----------------IGM 97
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120
TKADL+NNLGT AKSGTKA MEALQAGADISMIGQFGVGFYSAY+VA+KV V +KHND+E
Sbjct: 98 TKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDE 157
Query: 121 QYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPI 180
QY WESSAGGSFT++ D+ +P+GRGTK++LH+KEDQ EY+EE+++KE+VKKHSQFIGYPI
Sbjct: 158 QYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPI 217
Query: 181 KLLVEKEREKELSEDEE 197
L +EKEREK +
Sbjct: 218 TLYLEKEREKGEFNSKL 234
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 322 bits (828), Expect = e-112
Identities = 95/226 (42%), Positives = 131/226 (57%), Gaps = 21/226 (9%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIR SLTD + L + L +KI +KE+ L + D+G +GM
Sbjct: 43 ALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG----------------VGM 86
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAG-----ADISMIGQFGVGFYSAYMVADKVTVTSK 115
T+ +LV NLGT AKSGT + + + +IGQFGVGFYSA++VADKV VTSK
Sbjct: 87 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSK 146
Query: 116 HNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQF 175
HN++ Q+IWES + I LGRGT I L +KE+ ++Y+E IK +VKK+SQF
Sbjct: 147 HNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQF 206
Query: 176 IGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGEDAD 221
I +PI + K E +EEE KEE+++ D +E+E E+
Sbjct: 207 INFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKK 252
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 317 bits (815), Expect = e-110
Identities = 101/221 (45%), Positives = 139/221 (62%), Gaps = 18/221 (8%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
AL+KIR+ SL+D S L EK L I+I NKE+ L+I D+G IGM
Sbjct: 61 ALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTG----------------IGM 104
Query: 61 TKADLVNNLGTTAKSGTKASMEAL-QAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDN 119
TK DL+NNLGT AKSGT +EA+ ++G D+S+IGQFGVGFYSA++VADKV V +K+ND+
Sbjct: 105 TKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDD 164
Query: 120 EQYIWESSAGGSFTIKPDNS-QPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGY 178
EQYIWES+A FTI D L RGT+I LH+KED + +KK+ +++ K+SQFI +
Sbjct: 165 EQYIWESTADAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQF 224
Query: 179 PIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGED 219
PI LL E +E+ D ++ + + + D+
Sbjct: 225 PIYLLHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNK 265
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA,
NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus
familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A*
1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A*
1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Length = 236
Score = 314 bits (806), Expect = e-110
Identities = 85/203 (41%), Positives = 116/203 (57%), Gaps = 21/203 (10%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIR SLTD + L + L +KI +KE+ L + D+G +GM
Sbjct: 47 ALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG----------------VGM 90
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAG-----ADISMIGQFGVGFYSAYMVADKVTVTSK 115
T+ +LV NLGT AKSGT + + + +IGQFGVGFYSA++VADKV VTSK
Sbjct: 91 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSK 150
Query: 116 HNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQF 175
HN++ Q+IWES + I LGRGT I L +KE+ ++Y+E IK +VKK+SQF
Sbjct: 151 HNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQF 210
Query: 176 IGYPIKLLVEKEREKELSEDEEE 198
I +PI + K + + E
Sbjct: 211 INFPIYVWSSKTGGGGKTVWDWE 233
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A
{Escherichia coli}
Length = 235
Score = 287 bits (736), Expect = 3e-99
Identities = 67/192 (34%), Positives = 118/192 (61%), Gaps = 23/192 (11%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
A DK+R+ +L++P E + L +++ +K+++TLTI D+G +GM
Sbjct: 62 AADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG----------------VGM 105
Query: 61 TKADLVNNLGTTAKSGTKASMEALQA--GADISMIGQFGVGFYSAYMVADKVTVTSK--- 115
T+ +++++LGT AKSGTK+ +E+L + D +IGQFGVGFYSA++VADKVTV ++
Sbjct: 106 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAG 165
Query: 116 HNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQF 175
WES+ G +T+ + RGT+I LH++E + E++++ +++ I+ K+S
Sbjct: 166 EKPENGVFWESAGEGEYTVADITKED--RGTEITLHLREGEDEFLDDWRVRSIISKYSDH 223
Query: 176 IGYPIKLLVEKE 187
I P+++ +E
Sbjct: 224 IALPVEIEKREE 235
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 296 bits (759), Expect = 3e-97
Identities = 126/222 (56%), Positives = 166/222 (74%), Gaps = 17/222 (7%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIRY+SL+DP +LE+E +L I+I P E+K L I DSG IGM
Sbjct: 41 ALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSG----------------IGM 84
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120
TKA+L+NNLGT AKSGTKA MEAL AGAD+SMIGQFGVGFYS ++VAD+V V SK ND+E
Sbjct: 85 TKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDE 144
Query: 121 QYIWESSAGGSFTIKPDNS-QPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYP 179
QYIWES+AGGSFT+ D + +GRGT + L +K+DQ EY+EEK+IKE++K+HS+F+ YP
Sbjct: 145 QYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYP 204
Query: 180 IKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGEDAD 221
I+L+V KE EKE+ EEE+K EE+K+E+K + + + + +
Sbjct: 205 IQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEE 246
Score = 27.8 bits (62), Expect = 3.1
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 178 YPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLE 214
+ K LV+ ++ EL E +EE+ + E++ ++ P +
Sbjct: 516 FEGKTLVDITKDFELEETDEEKAEREKEIKEYEPLTK 552
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 283 bits (727), Expect = 2e-92
Identities = 86/223 (38%), Positives = 122/223 (54%), Gaps = 31/223 (13%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIR SLTD + L + L +KI +KE+ L + D+G +GM
Sbjct: 60 ALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG----------------VGM 103
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAG-----ADISMIGQFGVGFYSAYMVADKVTVTSK 115
T+ +LV NLGT AKSGT + + + +IGQFGVGFYSA++VADKV VTSK
Sbjct: 104 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSK 163
Query: 116 HNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQF 175
HN++ Q+IWES + I LGRGT I L +KE+ ++Y+E IK +VKK+SQF
Sbjct: 164 HNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQF 223
Query: 176 IGYPIKLLVEKEREKELSEDEEEE----------KKEEEKEED 208
I +PI + K + + E +E ++++
Sbjct: 224 INFPIYVWSSKTGGGGKTVWDWELMNDIKPIWQRPSKEVEDDE 266
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics,
structura genomics consortium, SGC, stress response;
HET: AN2; 2.01A {Plasmodium falciparum}
Length = 272
Score = 266 bits (682), Expect = 1e-90
Identities = 77/212 (36%), Positives = 125/212 (58%), Gaps = 28/212 (13%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGF------------------ 42
A DK R + ++E + +I E++ ++
Sbjct: 62 ACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKNDIKKLII 121
Query: 43 --IPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAG-ADISMIGQFGVG 99
P+KE+KTLTI D+GIGM K++L+NNLGT A+SGT ++ ++ G AD ++IGQFGVG
Sbjct: 122 KIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVG 181
Query: 100 FYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKP------DNSQPLGRGTKIVLHMK 153
FYS+++V+++V V +K +++ Y W S GSF++ + G GTKI+LH+K
Sbjct: 182 FYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLK 240
Query: 154 EDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVE 185
E+ EY+E+ K+KE++KK+S+FI +PI++ E
Sbjct: 241 EECDEYLEDYKLKELIKKYSEFIKFPIEIWSE 272
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 262 bits (672), Expect = 2e-85
Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 32/222 (14%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
A DK+R+ +L++P E + L +++ +K+++TLTI D+G +GM
Sbjct: 42 AADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG----------------VGM 85
Query: 61 TKADLVNNLGTTAKSGTKASMEALQA--GADISMIGQFGVGFYSAYMVADKVTVTSK--- 115
T+ +++++LGT AKSGTK+ +E+L + D +IGQFGVGFYSA++VADKVTV ++
Sbjct: 86 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAG 145
Query: 116 HNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQF 175
WES+ G +T+ + RGT+I LH++E + E++++ +++ I+ K+S
Sbjct: 146 EKPENGVFWESAGEGEYTVADITKED--RGTEITLHLREGEDEFLDDWRVRSIISKYSDH 203
Query: 176 IGYPIKLLVEKEREKELSEDEEE---------EKKEEEKEED 208
I P+++ +E++ E E+ K E +E+
Sbjct: 204 IALPVEIEKREEKDGETVISWEKINKAQALWTRNKSEITDEE 245
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 264 bits (676), Expect = 2e-85
Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 32/222 (14%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
A DK+R+ +L++P E + L +++ +K+++TLTI D+G +GM
Sbjct: 42 AADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG----------------VGM 85
Query: 61 TKADLVNNLGTTAKSGTKASMEALQA--GADISMIGQFGVGFYSAYMVADKVTVTSK--- 115
T+ +++++LGT AKSGTK+ +E+L + D +IGQFGVGFYSA++VADKVTV ++
Sbjct: 86 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAG 145
Query: 116 HNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQF 175
WES+ G +T+ + RGT+I LH++E + E++++ +++ I+ K+S
Sbjct: 146 EKPENGVFWESAGEGEYTVADITKED--RGTEITLHLREGEDEFLDDWRVRSIISKYSDH 203
Query: 176 IGYPIKLLVEKEREKELSEDEEE---------EKKEEEKEED 208
I P+++ +E++ E E+ K E +E+
Sbjct: 204 IALPVEIEKREEKDGETVISWEKINKAQALWTRNKSEITDEE 245
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.002
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 186 KEREKELSE-DEEEEKKEEEKEEDKTPKLED 215
+E+ K L E D + E+E E LE+
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
Score = 34.7 bits (79), Expect = 0.012
Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 153 KEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDK 209
+E+Q + ++E V + + + +++ E + E+ E+ K ++
Sbjct: 91 REEQRKRLQELDAASKVMEQ--------EWREKAKKDLEEWNQRQSEQVEKNKINNR 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.003
Identities = 36/245 (14%), Positives = 68/245 (27%), Gaps = 96/245 (39%)
Query: 3 DKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNK---------------- 46
+ +E++ D +L++EK I E + +
Sbjct: 1689 SAMIFETIVD-GKLKTEK-----IFKEINEHSTSYTFRS--EKGLLSATQFTQPALTLME 1740
Query: 47 -------EEKTLTIIDS---G--IG-----------MTKADLVNNLGTTAKSGTKASMEA 83
+ K L D+ G +G M+ LV G A
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE---VVFYRG-MTMQVA 1796
Query: 84 LQAG----ADISMI----GQFGVGFYSAYM--VADKVTVTSKH-----NDN---EQYIWE 125
+ ++ MI G+ F + V ++V + N N +QY+
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV-- 1854
Query: 126 SSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVE 185
+AG L + +I+ +KI I++ L +E
Sbjct: 1855 -AAG----------------DLRALDTVTNVLNFIKLQKID-IIE-------LQKSLSLE 1889
Query: 186 KEREK 190
+
Sbjct: 1890 EVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.48
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 36/168 (21%)
Query: 15 RLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIG--MTKADLVN----- 67
+LE+E LH I+ + T IP ++ S IG + +
Sbjct: 438 KLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQ---YFYSHIGHHLKNIEHPERMTLF 493
Query: 68 -----NLG-TTAKSGTKASMEALQAGADI-SMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120
+ K + A A I + + Q FY Y+ E
Sbjct: 494 RMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQL--KFYKPYI-------CDNDPKYE 542
Query: 121 QYIWESSAGGSFTIKPDNSQPLGRGTKIV---LHMKEDQAEYIEEKKI 165
+ + +A F K + + + T ++ L M ED+A + E K
Sbjct: 543 RLV---NAILDFLPKIEENLICSKYTDLLRIAL-MAEDEAIFEEAHKQ 586
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 29.6 bits (67), Expect = 0.64
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 177 GYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDE 216
I++L +KE E+ + + EEEE K E ++++K K +D+
Sbjct: 222 KTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A
{Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B
2qna_B
Length = 365
Score = 29.4 bits (65), Expect = 0.84
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 186 KEREKELSEDEEEEKKEEEKEEDKTPKLEDEGEDADCPA 224
KE KE + E E E TPKL+ D P
Sbjct: 322 KEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPG 360
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 28.5 bits (64), Expect = 1.1
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 17/56 (30%)
Query: 153 KEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEED 208
K+ +++Y K++KE V+K E ++ +D++++ +++ E D
Sbjct: 131 KDHKSQY--VKRVKETVEKSW---------------EDDMDDDDDDDDDDDDDEAD 169
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 28.9 bits (65), Expect = 1.5
Identities = 7/70 (10%), Positives = 18/70 (25%), Gaps = 4/70 (5%)
Query: 152 MKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKE-EEKEEDKT 210
I + K + + + E + + D + E +
Sbjct: 905 KSVYLGSNETGDSITAVQAKLKNLEAFDGEC---QSLEGQSNSDLLSILAQLTELNYNGV 961
Query: 211 PKLEDEGEDA 220
P+L + +
Sbjct: 962 PELTERKDTF 971
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 28.8 bits (65), Expect = 1.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 181 KLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLE 214
K LV+ ++ EL E +EE+ + E++ ++ P +
Sbjct: 247 KTLVDITKDFELEETDEEKAEREKEIKEYEPLTK 280
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 28.3 bits (64), Expect = 1.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 181 KLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLE 214
K LV+ ++ EL E +EE+ + E++ ++ P +
Sbjct: 247 KTLVDITKDFELEETDEEKAEREKEIKEYEPLTK 280
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 28.6 bits (63), Expect = 1.9
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 120 EQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYP 179
E Y A ++ +N + M+E++ E++ + K E+ + +
Sbjct: 288 ENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVK 347
Query: 180 IKLLVEKEREKELSEDEEEEKKEEEKE----EDKTPKLEDE 216
K+ K+ E EL E+ KK E + E+K + EDE
Sbjct: 348 EKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDE 388
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 28.2 bits (64), Expect = 2.3
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 163 KKIKEIVKKH---SQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLE 214
KIKE V K+ + I + L E +L E EE+++ + L
Sbjct: 245 IKIKEWVDKYDPGALVIPFSGAL------ELKLQELSAEERQKYLEANMTQSALP 293
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6
sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB:
3usz_A 3f93_A 3f94_A 3ut0_A
Length = 822
Score = 28.1 bits (63), Expect = 2.9
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 73 AKSGTKASMEALQAGADISMIGQFGVGFY 101
+ +A+ AG D+ M+ + FY
Sbjct: 302 EGCDLEQCAQAINAGVDVIMVPEHFEAFY 330
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 27.9 bits (63), Expect = 3.3
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 163 KKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 206
KIK+ + ++S G + + + E+ L+ EEE EE K+
Sbjct: 247 PKIKKWIDENSP--GDTL-IPMSVAFEERLTNFTEEEAIEECKK 287
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.8 bits (61), Expect = 3.4
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 133 TIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKEL 192
+ ++ P + + + + E++ E + KE + K KE EKEL
Sbjct: 305 EMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKEL 364
Query: 193 SEDEEEEKKEEEKE----EDKTPKLEDE 216
E + KK + E EDK L+DE
Sbjct: 365 HEKFDRLKKLHQDEKKKLEDKKKSLDDE 392
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 3.5
Identities = 12/73 (16%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 146 TKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK--EREKELSEDEEEEKKEE 203
+ ++ + Y E ++++ + Q + + + + E E+ + + E+KK +
Sbjct: 895 NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954
Query: 204 EKEEDKTPKLEDE 216
++ D +LE+E
Sbjct: 955 QQMLDLEEQLEEE 967
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 317
Score = 27.4 bits (60), Expect = 3.6
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 11/175 (6%)
Query: 36 TIIDSGFIPNKEEKTLTIIDSGIGMTKADLVNNLGTTAKSGTKASMEALQAGADISMIGQ 95
T I G I + L +G ++A L+N L + G I +
Sbjct: 145 TKISRGTIEILSDVQLIKTGDKVGASEATLLNMLN----------ISPFSFGLVIQQVFD 194
Query: 96 FGVGFYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHM-KE 154
G + + + T+ S+ + + + + + G K VL + E
Sbjct: 195 NGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVE 254
Query: 155 DQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDK 209
+ +K+K + S F+ + + E KEE +E D+
Sbjct: 255 TDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDE 309
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A*
2p9e_A* 2pa3_A* 2p9g_A*
Length = 404
Score = 27.6 bits (62), Expect = 3.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 75 SGTKASMEALQAGADISMIGQFGVG 99
S T + + + A + IG F +G
Sbjct: 55 SRTHLTEDVINAAEKLVAIGAFAIG 79
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 27.6 bits (62), Expect = 3.8
Identities = 9/60 (15%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 160 IEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGED 219
+ +++K ++++ I+ + + +++ E +EE + E + K E E +
Sbjct: 17 LTPEQMKNYGMEYAK-----IEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQ 71
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.8 bits (62), Expect = 3.9
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 13/68 (19%)
Query: 153 KEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPK 212
+ + E KI ++ +K E+ KE E+ E +T K
Sbjct: 918 RYKKLHIGLENKIMQLQRK-------------IDEQNKEYKSLLEKMNNLEITYSTETEK 964
Query: 213 LEDEGEDA 220
L + E
Sbjct: 965 LRSDVERL 972
Score = 26.6 bits (59), Expect = 7.5
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 161 EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGED 219
+ K+ K +++K + L + E E + E + E+E ++
Sbjct: 940 QNKEYKSLLEKMN-------NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
Score = 26.6 bits (59), Expect = 8.8
Identities = 9/61 (14%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 161 EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGEDA 220
+ + K I + + + E E+ +SE +E+ + ++E+ ++ D+ ++
Sbjct: 1003 TQTEKKTIEEWADK---------YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
Query: 221 D 221
Sbjct: 1054 T 1054
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold,
ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL;
1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB:
1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A*
1j8v_A*
Length = 602
Score = 27.6 bits (62), Expect = 4.1
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 72 TAKSGTKASMEALQAGADISMIGQFGVGFY 101
+ + ++ AG D+ M+ F
Sbjct: 296 AGSDYSYSVKASILAGLDMIMVPNKYQQFI 325
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 27.3 bits (61), Expect = 4.3
Identities = 5/65 (7%), Positives = 9/65 (13%)
Query: 157 AEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDE 216
I + + S K+ E K
Sbjct: 112 RSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIA 171
Query: 217 GEDAD 221
+
Sbjct: 172 QLNYA 176
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 27.3 bits (61), Expect = 4.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 191 ELSEDEEEEKKEEEKEEDKTPKLE 214
EL EDEEE+KK+EEK+ +
Sbjct: 260 ELPEDEEEKKKQEEKKTKFENLCK 283
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1
d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Length = 529
Score = 27.3 bits (61), Expect = 4.6
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 54 IDSGIGMTKADLVNNLGTTA----KSGTKASMEALQAGADISMIGQFGVG 99
+ G + L+ + +S T E L A + ++ + GVG
Sbjct: 27 VRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVG 76
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.0 bits (60), Expect = 5.0
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 185 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGED 219
E E + E + EE K E + ED
Sbjct: 198 ELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSED 232
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 26.5 bits (59), Expect = 5.4
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 153 KEDQAEYIEEKKIKEIVKKHSQ 174
++AEY +KK+ K++S+
Sbjct: 138 SRNKAEY--DKKVLLQAKQYSK 157
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 26.9 bits (60), Expect = 5.7
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 191 ELSEDEEEEKKEEEKEEDKTPKLE 214
E EEE+++ EE++ +
Sbjct: 276 HFEESEEEKQQREEEKAACEKLCK 299
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 26.9 bits (60), Expect = 6.0
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 152 MKEDQAEYIEE-KKIKEIVKKHSQF--IGYPIKLLVEKEREKELSEDEEEEKKEEEKEED 208
+ E + E + + K + E + + Y ++ +E+E S+ E+ K +
Sbjct: 532 LIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKT--KLQGMLNK 589
Query: 209 KTPKLEDEGEDAD 221
L DEG D+
Sbjct: 590 AEEWLYDEGFDSI 602
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 26.4 bits (58), Expect = 6.6
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 185 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGEDAD 221
E E EE +E +EE K E++ E +
Sbjct: 205 RDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATE 241
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 26.8 bits (58), Expect = 6.8
Identities = 10/72 (13%), Positives = 32/72 (44%)
Query: 147 KIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 206
+I + + ++ K + E+ +K+ Q + + E ++ + + + +E+E
Sbjct: 488 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE 547
Query: 207 EDKTPKLEDEGE 218
KL+++ +
Sbjct: 548 RTLALKLQEQEQ 559
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase
III TAU subunit, transferase; HET: DNA; NMR {Escherichia
coli}
Length = 128
Score = 25.9 bits (57), Expect = 7.2
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 138 NSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK-EREKELSEDE 196
N+ + LH++ Q +++ + S G ++L + + + + E
Sbjct: 45 NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 104
Query: 197 EEEKKEEEKEE 207
+ EEK
Sbjct: 105 WRQAIYEEKLA 115
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 26.4 bits (58), Expect = 8.1
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 187 EREKELSEDEE-EEKKEEEKEEDKTPKLEDEGEDAD 221
E++ +E+EE E EE+ E K + E ++ +
Sbjct: 205 TAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel
beta-sheets, transferase; NMR {Saccharomyces cerevisiae}
SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A*
1k2m_A* 1k2n_A*
Length = 158
Score = 25.9 bits (56), Expect = 8.2
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 100 FYSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEY 159
F + V + + ++ + + S+ N+ + +GTK +L D+ +
Sbjct: 54 FKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYL----NNNRMIQGTKFLLQ-DGDEIKI 108
Query: 160 IEEKKIKEIVKKHSQFIGYPIKLLVEKE---REKELSEDEEEEKKEEEKEEDKTPKL 213
I +K K IG+ +++ + +++ K+ +E+D KL
Sbjct: 109 IWDKNNKF-------VIGFKVEINDTTGLFNEGLGMLQEQRVVLKQTAEEKDLVKKL 158
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 26.0 bits (57), Expect = 8.3
Identities = 6/28 (21%), Positives = 20/28 (71%)
Query: 182 LLVEKEREKELSEDEEEEKKEEEKEEDK 209
++KE++K+L+ E+++ + E ++ ++
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEE 128
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 26.4 bits (59), Expect = 8.4
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 54 IDSGIGMTKADLVNNLGT----TAKSGTKASMEALQAGADISMIGQFGVG 99
+D ++K +L+N +G +S TK + + ++ G + +I + G+G
Sbjct: 29 VDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIG 78
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 26.5 bits (58), Expect = 9.2
Identities = 13/73 (17%), Positives = 32/73 (43%)
Query: 149 VLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEED 208
V+ K D +EE ++KH + + ++ L+++ +EE+ +E ++ +
Sbjct: 876 VVSEKRDFKSSMEELMKDSEIRKHGKEVAKIVQKLIKERTFDVKRINEEKALREAKEFME 935
Query: 209 KTPKLEDEGEDAD 221
K +E +
Sbjct: 936 KELGIEIIINPTE 948
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 26.2 bits (57), Expect = 9.8
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 185 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEGEDADCPA 224
E + D EE +KEE+ +K E+ + PA
Sbjct: 196 EVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.128 0.345
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,262,796
Number of extensions: 195272
Number of successful extensions: 1137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 930
Number of HSP's successfully gapped: 212
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.7 bits)