RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15682
(224 letters)
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 152 bits (384), Expect = 6e-47
Identities = 134/186 (72%), Positives = 157/186 (84%), Gaps = 16/186 (8%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIRYESLTDPS+L+S K LHI +IPNK+++TLTI+D+G IGM
Sbjct: 39 ALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG----------------IGM 82
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120
TKADL+NNLGT AKSGTKA MEALQAGADISMIGQFGVGFYSAY+VA+KVTV +KHND+E
Sbjct: 83 TKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDE 142
Query: 121 QYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPI 180
QY WESSAGGSFT++ D +P+GRGTK++LH+KEDQ EY+EE++IKEIVKKHSQFIGYPI
Sbjct: 143 QYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPI 202
Query: 181 KLLVEK 186
L VEK
Sbjct: 203 TLFVEK 208
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 213
Score = 147 bits (372), Expect = 4e-45
Identities = 114/190 (60%), Positives = 144/190 (75%), Gaps = 17/190 (8%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIRY+SL+DP +LE+E +L I+I P E+K L I DSG GM
Sbjct: 40 ALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI----------------GM 83
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAGADISMIGQFGVGFYSAYMVADKVTVTSKHNDNE 120
TKA+L+NNLGT AKSGTKA MEAL AGAD+SMIGQFGVGFYS ++VAD+V V SK ND+E
Sbjct: 84 TKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDE 143
Query: 121 QYIWESSAGGSFTIKPDNS-QPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYP 179
QYIWES+AGGSFT+ D + +GRGT + L +K+DQ EY+EEK+IKE++K+HS+F+ YP
Sbjct: 144 QYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYP 203
Query: 180 IKLLVEKERE 189
I+L+V KE E
Sbjct: 204 IQLVVTKEVE 213
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
9615]}
Length = 227
Score = 144 bits (364), Expect = 9e-44
Identities = 84/203 (41%), Positives = 115/203 (56%), Gaps = 21/203 (10%)
Query: 1 ALDKIRYESLTDPSRLESEKNLHIKIIPNKEEKTLTIIDSGFIPNKEEKTLTIIDSGIGM 60
ALDKIR SLTD + L + L +K +KE+ L + D+G+GM
Sbjct: 38 ALDKIRLISLTDENALAGNEELTVK----------------IKCDKEKNLLHVTDTGVGM 81
Query: 61 TKADLVNNLGTTAKSGTKASMEALQAG-----ADISMIGQFGVGFYSAYMVADKVTVTSK 115
T+ +LV NLGT AKSGT + + + +IGQFGVGFYSA++VADKV VTSK
Sbjct: 82 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSK 141
Query: 116 HNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQF 175
HN++ Q+IWES + I LGRGT I L +KE+ ++Y+E IK +VKK+SQF
Sbjct: 142 HNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQF 201
Query: 176 IGYPIKLLVEKEREKELSEDEEE 198
I +PI + K + + E
Sbjct: 202 INFPIYVWSSKTGGGGKTVWDWE 224
>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 26.1 bits (58), Expect = 1.7
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 160 IEEKKIKEIVKKHSQFIGYPIKLLVEKE 187
+ E++ + + +K +++IG ++LLV++
Sbjct: 4 LTEEETRVMFEKIAKYIGENLQLLVDRP 31
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 26.3 bits (57), Expect = 2.9
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 134 IKPDNSQPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFI 176
+ D+ L + + ++ IEEK + + +H+ FI
Sbjct: 253 VTKDSETKLLLSEE-----EIEKGVEIEEKIVDNLQSRHTAFI 290
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 26.2 bits (58), Expect = 3.3
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 179 PIKLLVEKERE--KELSEDEEEEKKEEEKEEDK 209
+ + + E K++S++E+ + KEE ++ K
Sbjct: 104 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLK 136
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 26.3 bits (57), Expect = 3.8
Identities = 12/120 (10%), Positives = 37/120 (30%), Gaps = 11/120 (9%)
Query: 101 YSAYMVADKVTVTSKHNDNEQYIWESSAGGSFTIKPDNSQPLGRGTKIVLHMKEDQAEYI 160
+ + K S +++ + I + S ++S EY+
Sbjct: 639 FPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYL 698
Query: 161 -----------EEKKIKEIVKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKEEDK 209
+K+ + ++ + +KL + +L E ++ +++ +
Sbjct: 699 LGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 25.8 bits (56), Expect = 4.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 179 PIKLLVEKEREKELSEDEEEEKKEEEKE 206
I++L +KE E+ + + EEEE K E ++
Sbjct: 223 VIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 25.6 bits (55), Expect = 6.1
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 163 KKIKEIVKKHS---QFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 206
KIK+ + ++S I + E+ L+ EEE EE K+
Sbjct: 237 PKIKKWIDENSPGDTLIPMSVAF------EERLTNFTEEEAIEECKK 277
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 25.1 bits (55), Expect = 6.6
Identities = 6/28 (21%), Positives = 20/28 (71%)
Query: 182 LLVEKEREKELSEDEEEEKKEEEKEEDK 209
++KE++K+L+ E+++ + E ++ ++
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEE 128
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 24.3 bits (52), Expect = 6.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 2 LDKIRYESLTDPSRLESEKNLHIKIIPNK 30
+++I YE T + + +K ++I K
Sbjct: 5 MERIEYEMHTPDPKADPDKLHFVQIDEAK 33
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 24.8 bits (53), Expect = 8.9
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 151 HMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK-EREKELSEDEEEEKKEEEKEE 207
+D + + ++ K+ PI L + E++E+ +++ + +
Sbjct: 287 STSDDSSAFRSVDEVNYWDKQDH-----PISRLRHYLLSQGWWDEEQEKAWRKQSRRK 339
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 24.6 bits (53), Expect = 9.6
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 179 PIKLLVEKEREKELSEDEEEEKKEEEKEE 207
+K+L +E EK ++E E+E+++ E+K++
Sbjct: 215 SLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation
initiation factor IF2 {Escherichia coli [TaxId: 562]}
Length = 49
Score = 22.6 bits (49), Expect = 9.9
Identities = 5/38 (13%), Positives = 18/38 (47%)
Query: 169 VKKHSQFIGYPIKLLVEKEREKELSEDEEEEKKEEEKE 206
+K + ++ LV++ + + + ++ +EK+
Sbjct: 5 IKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQ 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.306 0.128 0.345
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 793,549
Number of extensions: 37531
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 56
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (23.7 bits)