BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15683
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|B Chain B, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|C Chain C, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6N|A Chain A, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|B Chain B, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|C Chain C, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|D Chain D, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|E Chain E, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|F Chain F, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
Length = 448
Score = 329 bits (843), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/250 (66%), Positives = 188/250 (75%), Gaps = 6/250 (2%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKENQK IYYITGETKDQVANS+FVER++K G EVIYM EPIDEY VQQLK+++GKTLVS
Sbjct: 194 MKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVS 253
Query: 61 VTXXXXXXXXXXXXXXXXXXXXXXXXNLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
VT NLCK+MKDIL+KKVEKV+VSNRLV SPCCIVTS
Sbjct: 254 VTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTST 313
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXLV 180
YGWTANMERIMKAQALRD STMGYMAAKKHLEINPDHSI+ETLRQ LV
Sbjct: 314 YGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLV 373
Query: 181 NLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAG---DIPVAEG 237
LL+ET+LLSSGF+LE+PQ HA RI+RMIKLGLGI+++D T DD A ++P EG
Sbjct: 374 ILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDD--PTADDTSAAVTEEMPPLEG 431
Query: 238 EAEDASRMEE 247
+ +D SRMEE
Sbjct: 432 D-DDTSRMEE 440
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 46/52 (88%)
Query: 241 DASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDED 292
+A + +++VKDLV LL+ET+LLSSGF+LE+PQ A RI+RMIKLGLGI+++D
Sbjct: 361 EADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDD 412
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90
From Leishmania Major, Lmjf33.0312
Length = 444
Score = 213 bits (543), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 142/216 (65%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MK QK IYYITG++K ++ S F+E+ ++RG EV++MTEPIDEYV+QQ+KD++ K
Sbjct: 210 MKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFAC 269
Query: 61 VTXXXXXXXXXXXXXXXXXXXXXXXXNLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
+T LCK MK++L KVEKVIVS RL SPC +VTS+
Sbjct: 270 LTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSE 329
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXLV 180
+GW+A+ME+IM+ QALRD+S YM +KK +E+NP H I++ LR+ LV
Sbjct: 330 FGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLV 389
Query: 181 NLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIE 216
LLF+TSLL+SGF LE+P +A RI+RMIKLGL ++
Sbjct: 390 FLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLD 425
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 242 ASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIE 289
A ++AVKDLV LLF+TSLL+SGF LE+P A RI+RMIKLGL ++
Sbjct: 378 ADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLD 425
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 136/215 (63%), Gaps = 2/215 (0%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
M E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++GKTLV
Sbjct: 464 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 523
Query: 61 VTXXXXXXXXXXXXXXXXXXXXXXXXNLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
+T L K +K+IL +VEKV+VS +L+D+P I T Q
Sbjct: 524 ITKDFELEETDEEKAEREKEIKEYEP-LTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQ 582
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQXXXX-XXXXXXXXXL 179
+GW+ANMERIMKAQALRD+S YM++KK EI+P I++ L++ L
Sbjct: 583 FGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDL 642
Query: 180 VNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLG 214
LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 643 TKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 5/54 (9%)
Query: 234 VAEGEAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLG 287
V EG A+D + VKDL LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 629 VDEGGAQDKT-----VKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|D Chain D, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 405
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 136/215 (63%), Gaps = 2/215 (0%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
M E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++GKTLV
Sbjct: 192 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 251
Query: 61 VTXXXXXXXXXXXXXXXXXXXXXXXXNLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
+T L K +K+IL +VEKV+VS +L+D+P I T Q
Sbjct: 252 ITKDFELEETDEEKAEREKEIKEYEP-LTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQ 310
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQXXXX-XXXXXXXXXL 179
+GW+ANMERIMKAQALRD+S YM++KK EI+P I++ L++ L
Sbjct: 311 FGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDL 370
Query: 180 VNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLG 214
LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 371 TKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 405
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 5/54 (9%)
Query: 234 VAEGEAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLG 287
V EG A+D + VKDL LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 357 VDEGGAQDKT-----VKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 405
>pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|B Chain B, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|C Chain C, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|D Chain D, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|E Chain E, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|F Chain F, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|G Chain G, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|H Chain H, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|I Chain I, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|J Chain J, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
Length = 450
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 128/225 (56%), Gaps = 4/225 (1%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q +IY++ G ++ + +S FVER+ K+G+EVIY+TEP+DEY +Q L ++DGK +
Sbjct: 216 MKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQN 275
Query: 61 VTXXXXXXXXXXXXXXXXXXXXXXXXNLCKVMKD-ILDKKVEKVIVSNRLVDSPCCIVTS 119
V L MKD L K+EK +VS RL +SPC +V S
Sbjct: 276 VAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVAS 335
Query: 120 QYGWTANMERIMKAQAL---RDTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXX 176
QYGW+ NMERIMKAQA +D ST Y + KK EINP H +++ + +
Sbjct: 336 QYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTV 395
Query: 177 XXLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEV 221
L +LFET+ L SG+ L + + + RI RM++L L I+ + +V
Sbjct: 396 SDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKV 440
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 246 EEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDEDEV 294
++ V DL +LFET+ L SG+ L + + RI RM++L L I+ + +V
Sbjct: 392 DKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKV 440
>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
Length = 666
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 4/220 (1%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q +IY++ G ++ + +S FVER+ K+G+EVIY+TEP+DEY +Q L ++DGK +
Sbjct: 443 MKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQN 502
Query: 61 VTXXXXXXXXXXXXXXXXXXXXXXXXNLCKVMKD-ILDKKVEKVIVSNRLVDSPCCIVTS 119
V L MKD L K+EK +VS RL +SPC +V S
Sbjct: 503 VAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVAS 562
Query: 120 QYGWTANMERIMKAQAL---RDTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXX 176
QYGW+ NMERIMKAQA +D ST Y + KK EINP H +++ + +
Sbjct: 563 QYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTV 622
Query: 177 XXLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIE 216
L +LFET+ L SG+ L + + + RI RM++L L I+
Sbjct: 623 SDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNID 662
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 246 EEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIE 289
++ V DL +LFET+ L SG+ L + + RI RM++L L I+
Sbjct: 619 DKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNID 662
>pdb|3PRY|A Chain A, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|B Chain B, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|C Chain C, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
Length = 268
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 59/62 (95%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE QK IYYITGE+K+QVANS+FVERV+KRGFEV+YMTEPIDEY VQQLK++DGK+LVS
Sbjct: 194 MKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVS 253
Query: 61 VT 62
VT
Sbjct: 254 VT 255
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 11/210 (5%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q++IYYIT ++ +S +E ++K+G EV+ +++ IDE+++ L ++DGK S
Sbjct: 423 MKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQS 482
Query: 61 VTXXXXXXXXXXXXXXXXXXXXXXXXN-LCKVMKDILDKKVEKVIVSNRLVDSPCCIVTS 119
V+ +K +L ++V+ V +++RL D+P + T
Sbjct: 483 VSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTD 542
Query: 120 QYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXL 179
+ M ++ A A + + Y+ E+NPDH +V +
Sbjct: 543 ADEMSTQMAKLFAA-AGQKVPEVKYI-----FELNPDHVLV----KRAADTEDEAKFSEW 592
Query: 180 VNLLFETSLLSSGFTLEEPQVHAARIHRMI 209
V LL + +LL+ TLE+P + R+++++
Sbjct: 593 VELLLDQALLAERGTLEDPNLFIRRMNQLL 622
>pdb|1USU|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90
Length = 260
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 47/62 (75%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
M E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++GKTLV
Sbjct: 194 MPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 253
Query: 61 VT 62
+T
Sbjct: 254 IT 255
>pdb|1USV|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|C Chain C, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|E Chain E, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|G Chain G, The Structure Of The Complex Between Aha1 And Hsp90
Length = 260
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 47/62 (75%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
M E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++GKTLV
Sbjct: 194 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 253
Query: 61 VT 62
+T
Sbjct: 254 IT 255
>pdb|1HK7|A Chain A, Middle Domain Of Hsp90
pdb|1HK7|B Chain B, Middle Domain Of Hsp90
Length = 288
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 47/62 (75%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
M E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++GKTLV
Sbjct: 192 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 251
Query: 61 VT 62
+T
Sbjct: 252 IT 253
>pdb|2O1W|A Chain A, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|B Chain B, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|C Chain C, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|D Chain D, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|E Chain E, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
Length = 506
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 46/61 (75%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q +IY++ G ++ + +S FVER+ K+G+EVIY+TEP+DEY +Q L ++DGK +
Sbjct: 443 MKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQN 502
Query: 61 V 61
V
Sbjct: 503 V 503
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q++IYYIT ++ +S +E ++K+G EV+ +++ IDE+++ L ++DGK S
Sbjct: 423 MKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQS 482
Query: 61 VTXXXXXXXXXXXXXXXXXXXXXXXXN-LCKVMKDILDKKVEKVIVSNRLVDSPCCIVTS 119
V+ +K +L ++V+ V +++RL D+P + T
Sbjct: 483 VSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTD 542
Query: 120 QYGWTANMERIMKA 133
+ M ++ A
Sbjct: 543 ADEMSTQMAKLFAA 556
>pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
pdb|2GQ0|B Chain B, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
Length = 303
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q++IYYIT ++ +S +E ++K+G EV+ +++ IDE+++ L ++DGK S
Sbjct: 195 MKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQS 254
Query: 61 VT 62
V+
Sbjct: 255 VS 256
>pdb|1Y6Z|A Chain A, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
pdb|1Y6Z|B Chain B, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
Length = 263
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQL--KDYDGKTL 58
MKE+QK IYYI+GE K NS +E++K ++V++ EPIDE+ + L Y G +
Sbjct: 197 MKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPIDEFCLSSLTVNKYKGYEV 256
Query: 59 VSVT 62
+ V
Sbjct: 257 LDVN 260
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 138 DTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXLVNLLFETSLLSSG 192
D++ G+ K L++NP+++ + R+ L+++ ET LS+G
Sbjct: 425 DSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTG 479
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 138 DTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXLVNLLFETSLLSSG 192
D++ G+ K L++NP+++ + R+ L+++ ET LS+G
Sbjct: 425 DSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTG 479
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 138 DTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXLVNLLFETSLLSSG 192
D++ G+ K L++NP+++ + R+ L+++ ET LS+G
Sbjct: 425 DSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTG 479
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 138 DTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXLVNLLFETSLLSSG 192
D++ G+ K L++NP+++ + R+ L+++ ET LS+G
Sbjct: 424 DSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTG 478
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 138 DTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXLVNLLFETSLLSSG 192
D++ G+ K L++NP+++ + R+ L+++ ET LS+G
Sbjct: 424 DSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTG 478
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 138 DTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXLVNLLFETSLLSSG 192
D++ G+ K L++NP+++ + R+ L+++ ET LS+G
Sbjct: 424 DSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTG 478
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 138 DTSTMGYMAAKKHLEINPDHSIVETLRQXXXXXXXXXXXXXLVNLLFETSLLSSG 192
D++ G+ K L++NP+++ + R+ L+++ ET LS+G
Sbjct: 452 DSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTG 506
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,055,250
Number of Sequences: 62578
Number of extensions: 242376
Number of successful extensions: 775
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 34
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)