Query psy15683
Match_columns 304
No_of_seqs 252 out of 1447
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:51:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00183 HSP90: Hsp90 protein; 100.0 1.1E-62 2.5E-67 491.4 23.0 223 1-223 283-505 (531)
2 KOG0019|consensus 100.0 1.5E-60 3.2E-65 466.6 20.6 219 1-220 434-652 (656)
3 PTZ00272 heat shock protein 83 100.0 7.4E-59 1.6E-63 474.0 23.8 222 1-222 456-677 (701)
4 KOG0020|consensus 100.0 3.5E-58 7.7E-63 439.9 13.3 225 1-225 528-756 (785)
5 PTZ00130 heat shock protein 90 100.0 5.8E-56 1.3E-60 453.9 23.6 220 1-221 545-764 (814)
6 COG0326 HtpG Molecular chapero 100.0 3.4E-47 7.3E-52 378.4 20.2 203 1-213 419-622 (623)
7 PRK05218 heat shock protein 90 100.0 4.1E-46 8.9E-51 378.8 22.6 203 1-213 409-612 (613)
8 PRK14083 HSP90 family protein; 100.0 2.9E-35 6.4E-40 297.6 20.3 195 4-216 386-596 (601)
9 KOG0019|consensus 99.5 3.2E-16 6.9E-21 155.2 -10.4 218 8-292 433-651 (656)
10 PF00183 HSP90: Hsp90 protein; 99.3 4.1E-13 9E-18 135.2 3.0 97 185-294 394-503 (531)
11 KOG0020|consensus 99.3 1.8E-12 3.9E-17 126.0 5.8 74 210-294 679-752 (785)
12 PTZ00130 heat shock protein 90 99.2 7.4E-12 1.6E-16 129.9 4.1 98 182-292 653-762 (814)
13 PTZ00272 heat shock protein 83 99.2 1.2E-11 2.5E-16 127.8 4.1 97 184-293 566-675 (701)
14 COG0326 HtpG Molecular chapero 98.9 1.7E-09 3.6E-14 109.3 5.0 90 180-286 526-622 (623)
15 PRK05218 heat shock protein 90 98.5 8.3E-08 1.8E-12 98.7 4.6 86 185-287 521-613 (613)
16 PRK14083 HSP90 family protein; 98.0 2.2E-06 4.7E-11 87.9 2.6 65 211-290 531-597 (601)
17 PF06112 Herpes_capsid: Gammah 68.4 5.7 0.00012 33.7 3.2 23 151-173 16-38 (147)
18 KOG0541|consensus 48.5 19 0.00041 31.1 3.0 37 24-60 70-110 (171)
19 KOG0547|consensus 44.9 21 0.00045 36.3 3.2 58 148-210 173-232 (606)
20 PF09695 YtfJ_HI0045: Bacteria 40.3 23 0.00051 30.5 2.4 27 7-33 41-67 (160)
21 PF12588 PSDC: Phophatidylseri 39.3 86 0.0019 26.5 5.6 57 157-216 2-63 (141)
22 TIGR01133 murG undecaprenyldip 36.8 48 0.001 30.7 4.3 56 7-64 2-58 (348)
23 COG1480 Predicted membrane-ass 33.0 23 0.00051 37.2 1.5 19 148-166 467-486 (700)
24 PF07429 Glyco_transf_56: 4-al 31.5 57 0.0012 31.8 3.7 45 20-68 296-340 (360)
25 PF03562 MltA: MltA specific i 30.6 37 0.00081 29.2 2.2 34 11-48 50-83 (158)
26 PF03033 Glyco_transf_28: Glyc 28.3 98 0.0021 24.5 4.3 51 10-64 3-54 (139)
27 PF04914 DltD_C: DltD C-termin 27.9 64 0.0014 26.8 3.0 45 3-49 22-66 (130)
28 COG1157 FliI Flagellar biosynt 26.0 61 0.0013 32.4 3.0 28 22-49 242-269 (441)
29 PRK01964 4-oxalocrotonate taut 25.8 52 0.0011 23.1 1.9 30 262-291 8-37 (64)
30 PRK11162 mltA murein transglyc 24.8 45 0.00097 32.5 1.8 31 14-48 151-181 (355)
31 PRK03094 hypothetical protein; 24.8 67 0.0015 24.5 2.4 29 22-50 11-44 (80)
32 COG1844 Uncharacterized protei 24.2 1.5E+02 0.0032 24.4 4.3 96 35-168 4-102 (125)
33 PF04122 CW_binding_2: Putativ 23.8 3.1E+02 0.0068 20.4 6.5 55 4-61 24-79 (92)
34 PF13431 TPR_17: Tetratricopep 23.6 25 0.00054 21.8 -0.1 17 148-164 3-19 (34)
35 PF03698 UPF0180: Uncharacteri 23.1 75 0.0016 24.2 2.4 29 22-50 11-44 (80)
36 PF09748 Med10: Transcription 20.2 1.8E+02 0.0038 24.0 4.3 39 247-285 3-42 (128)
No 1
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=1.1e-62 Score=491.41 Aligned_cols=223 Identities=52% Similarity=0.882 Sum_probs=195.7
Q ss_pred CCCCCceEEEEECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccCCCCCCCchHHHhhhhh
Q psy15683 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREE 80 (304)
Q Consensus 1 Mk~~Qk~IYYi~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~~~~~~~~ee~k~~~~~ 80 (304)
||++|++|||++|+|++.+++|||+|.|++||||||||++|||+|||++|++|+|++|+||+++++++++.+++++..+.
T Consensus 283 mke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~ 362 (531)
T PF00183_consen 283 MKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYEVLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEE 362 (531)
T ss_dssp S-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHH
T ss_pred cccccccceEEecchHHHHhhccchhhHHhhCceEEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999998876666666667
Q ss_pred hHHHHHHHHHHHHhhhccccceEEEeccCCCCcEEEEecCCCchHHHHHHHHHhhccccccccccccccceeeCCCChHH
Q psy15683 81 DKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIV 160 (304)
Q Consensus 81 ~~~~~~~L~~~~k~~L~~~v~~V~vS~rL~~sPa~iv~~e~~~s~~M~rim~~~~~~~~~~~~~~~~k~~LEINp~HplI 160 (304)
.++++++|++|||++||++|.+|++|.||++|||||+++++|||++|||||+||++++++...+|..++||||||+||||
T Consensus 363 ~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLI 442 (531)
T PF00183_consen 363 LKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPAVLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLI 442 (531)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSEEEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHH
T ss_pred hhhHHHHHHHHHHhhhhhhhheecccccccCCcceeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHH
Confidence 78899999999999999999999999999999999999999999999999999998766655677889999999999999
Q ss_pred HHHHhhhhcccCcHHHHHHHHHhhhhhhhcCCCCCCChHHHHHHHHHHHHhhcCCCCCccccc
Q psy15683 161 ETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVAT 223 (304)
Q Consensus 161 ~~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm~k~Lein~~~~~~e 223 (304)
++|++++..+++++.++++|+||||+|+|++|+.++||+.|++|++++|.++|+++++.++.+
T Consensus 443 k~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~~~~~ 505 (531)
T PF00183_consen 443 KKLLKLVEKDEDDELAKDLAEQLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDAEVEE 505 (531)
T ss_dssp HHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STTTTTT
T ss_pred HHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCCcccc
Confidence 999999888888888999999999999999999999999999999999999999998865544
No 2
>KOG0019|consensus
Probab=100.00 E-value=1.5e-60 Score=466.60 Aligned_cols=219 Identities=58% Similarity=0.938 Sum_probs=210.0
Q ss_pred CCCCCceEEEEECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccCCCCCCCchHHHhhhhh
Q psy15683 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREE 80 (304)
Q Consensus 1 Mk~~Qk~IYYi~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~~~~~~~~ee~k~~~~~ 80 (304)
|+++|++||||+|+|+.++++|||+|.++++|+|||||.+||||+++++|.+|+||+|++|++++++++++++++++.++
T Consensus 434 m~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee 513 (656)
T KOG0019|consen 434 MREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEE 513 (656)
T ss_pred hcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999866666666677
Q ss_pred hHHHHHHHHHHHHhhhccccceEEEeccCCCCcEEEEecCCCchHHHHHHHHHhhccccccccccccccceeeCCCChHH
Q psy15683 81 DKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIV 160 (304)
Q Consensus 81 ~~~~~~~L~~~~k~~L~~~v~~V~vS~rL~~sPa~iv~~e~~~s~~M~rim~~~~~~~~~~~~~~~~k~~LEINp~HplI 160 (304)
.+++|+.||+|+|++||++|.+|++|+||++||||||++++|||++|+|+|+||++.+++.++||.++++|||||+||||
T Consensus 514 ~k~efe~lck~mK~iL~~kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpiv 593 (656)
T KOG0019|consen 514 SKKEFEELCKWMKEILGSKVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLV 593 (656)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHH
Confidence 78899999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHhhhhcccCcHHHHHHHHHhhhhhhhcCCCCCCChHHHHHHHHHHHHhhcCCCCCcc
Q psy15683 161 ETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDE 220 (304)
Q Consensus 161 ~~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm~k~Lein~~~~ 220 (304)
+.|.++..+|+++ .+++++.|||++|+|++|+.++||+.++.|+|++++.+|++.++.+
T Consensus 594 k~L~~~~~~dk~d-~~k~lv~llfetALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~~ 652 (656)
T KOG0019|consen 594 KTLRQLRESDKND-TAKDLVEQLYETALISAGFSLDDPQTMVGRINRLLKSGLGRDEDEV 652 (656)
T ss_pred HHHHHHHhcCcch-hHHHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHHHHHhccCCCcc
Confidence 9999999888877 8999999999999999999999999999999999999999998753
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=7.4e-59 Score=474.01 Aligned_cols=222 Identities=58% Similarity=0.971 Sum_probs=197.5
Q ss_pred CCCCCceEEEEECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccCCCCCCCchHHHhhhhh
Q psy15683 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREE 80 (304)
Q Consensus 1 Mk~~Qk~IYYi~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~~~~~~~~ee~k~~~~~ 80 (304)
||++|+.|||++|+|++++++|||+|.|++||||||||+|||||||+++|++|+|++|+||++++++++..+++++..+.
T Consensus 456 mk~~Q~~IYY~~~~s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~ 535 (701)
T PTZ00272 456 MKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREE 535 (701)
T ss_pred hccCCceEEEEeCCCHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999887643332222233
Q ss_pred hHHHHHHHHHHHHhhhccccceEEEeccCCCCcEEEEecCCCchHHHHHHHHHhhccccccccccccccceeeCCCChHH
Q psy15683 81 DKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIV 160 (304)
Q Consensus 81 ~~~~~~~L~~~~k~~L~~~v~~V~vS~rL~~sPa~iv~~e~~~s~~M~rim~~~~~~~~~~~~~~~~k~~LEINp~HplI 160 (304)
.++++++|++|||++||++|.+|++|+||++||||||++++|||++|+|||++|++++.++..+|..++||||||+||||
T Consensus 536 ~~~~~~~L~~~~k~~L~~kV~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiI 615 (701)
T PTZ00272 536 EKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPII 615 (701)
T ss_pred hHHHHHHHHHHHHHHhCCcccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHH
Confidence 45689999999999999999999999999999999999999999999999999985432223456689999999999999
Q ss_pred HHHHhhhhcccCcHHHHHHHHHhhhhhhhcCCCCCCChHHHHHHHHHHHHhhcCCCCCcccc
Q psy15683 161 ETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVA 222 (304)
Q Consensus 161 ~~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm~k~Lein~~~~~~ 222 (304)
++|++++..+.+++.++++|+||||+|+|++|+.++||+.|++|++++|+..|+++++.++.
T Consensus 616 k~L~~~~~~~~~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~~ 677 (701)
T PTZ00272 616 KELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEA 677 (701)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCcccccc
Confidence 99988765556666799999999999999999999999999999999998899999886653
No 4
>KOG0020|consensus
Probab=100.00 E-value=3.5e-58 Score=439.95 Aligned_cols=225 Identities=46% Similarity=0.786 Sum_probs=211.0
Q ss_pred CCCCCceEEEEECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccCCCCCCCchHHHhhhhh
Q psy15683 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREE 80 (304)
Q Consensus 1 Mk~~Qk~IYYi~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~~~~~~~~ee~k~~~~~ 80 (304)
||+.|++|||++|.||++++.|||+|.+.+|||||||+++|+||||||.|.+|+||+|++|.++++.++..+..|+..+.
T Consensus 528 MK~kQ~~IyymaGssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~ 607 (785)
T KOG0020|consen 528 MKEKQDKIYYMAGSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKTKESHEA 607 (785)
T ss_pred HhhccccEEEecCCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccchhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999877777777777
Q ss_pred hHHHHHHHHHHHHhh-hccccceEEEeccCCCCcEEEEecCCCchHHHHHHHHHhhcc---ccccccccccccceeeCCC
Q psy15683 81 DKVKFENLCKVMKDI-LDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALR---DTSTMGYMAAKKHLEINPD 156 (304)
Q Consensus 81 ~~~~~~~L~~~~k~~-L~~~v~~V~vS~rL~~sPa~iv~~e~~~s~~M~rim~~~~~~---~~~~~~~~~~k~~LEINp~ 156 (304)
.+++|+||++|+|+. |+++|.+++||+||++|||++|++.||||+||+|||++|+.+ +.+..-|+..|+||||||+
T Consensus 608 l~~~FepL~~W~k~~alkd~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPR 687 (785)
T KOG0020|consen 608 LEEEFEPLTKWLKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPR 687 (785)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCC
Confidence 889999999999985 689999999999999999999999999999999999999987 3333347889999999999
Q ss_pred ChHHHHHHhhhhcccCcHHHHHHHHHhhhhhhhcCCCCCCChHHHHHHHHHHHHhhcCCCCCcccccCC
Q psy15683 157 HSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGD 225 (304)
Q Consensus 157 HplI~~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm~k~Lein~~~~~~e~~ 225 (304)
||||+.|++++.+|++++.+++.|.++|.+|.|.+||.+.|+..|+.||+++|+.+|+|.|+..+.++.
T Consensus 688 HPlirell~Ri~adeeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e~ 756 (785)
T KOG0020|consen 688 HPLIRELLRRIAADEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEEI 756 (785)
T ss_pred ChHHHHHHHHhhcCcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998766543
No 5
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=5.8e-56 Score=453.95 Aligned_cols=220 Identities=32% Similarity=0.604 Sum_probs=195.4
Q ss_pred CCCCCceEEEEECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccCCCCCCCchHHHhhhhh
Q psy15683 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREE 80 (304)
Q Consensus 1 Mk~~Qk~IYYi~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~~~~~~~~ee~k~~~~~ 80 (304)
|+++|+.|||++|+|++++++|||+|.|++||||||||++||||||+++|++|+|++|++|++++++++..+++++..+.
T Consensus 545 Mke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~~~~~~e~~~~~~ 624 (814)
T PTZ00130 545 MKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFELTEDEKKKEEK 624 (814)
T ss_pred hccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccccccccchhhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999998887643333222233
Q ss_pred hHHHHHHHHHHHHhhhccccceEEEeccCCCCcEEEEecCCCchHHHHHHHHHhhccccccccccccccceeeCCCChHH
Q psy15683 81 DKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIV 160 (304)
Q Consensus 81 ~~~~~~~L~~~~k~~L~~~v~~V~vS~rL~~sPa~iv~~e~~~s~~M~rim~~~~~~~~~~~~~~~~k~~LEINp~HplI 160 (304)
.++++++|++|+|++|+++|.+|++|+||++||||||++++|||++|+|||++|+ ++.++++++..+|||||||+||||
T Consensus 625 ~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~-~~~~~~~~~~~k~iLEINp~Hpii 703 (814)
T PTZ00130 625 VKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINV-NNSDQIKAMSGQKILEINPDHPIM 703 (814)
T ss_pred HHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhh-ccccccccccCCeEEEECCCCHHH
Confidence 4567999999999999999999999999999999999999999999999999997 333223456789999999999999
Q ss_pred HHHHhhhhcccCcHHHHHHHHHhhhhhhhcCCCCCCChHHHHHHHHHHHHhhcCCCCCccc
Q psy15683 161 ETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEV 221 (304)
Q Consensus 161 ~~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm~k~Lein~~~~~ 221 (304)
++|+++...+++++.++++|+||||+|+|++|+.++||..|++|++++|.+.|++++..++
T Consensus 704 ~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~~~ 764 (814)
T PTZ00130 704 IDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLKI 764 (814)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccccc
Confidence 9998765445556679999999999999999999999999999999999999999887544
No 6
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-47 Score=378.40 Aligned_cols=203 Identities=41% Similarity=0.654 Sum_probs=185.7
Q ss_pred CCCCCceEEEEECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccCCCCCCCchHH-Hhhhh
Q psy15683 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEE-KKKRE 79 (304)
Q Consensus 1 Mk~~Qk~IYYi~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~~~~~~~~ee~-k~~~~ 79 (304)
||++|++|||++|+|..++++|||+|.|++||||||||+|+||+|++..+.+|+|++|++|++++++++...++ +...+
T Consensus 419 mke~q~~IyY~tges~~~~~~sP~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~ 498 (623)
T COG0326 419 MKEGQKQIYYITGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSE 498 (623)
T ss_pred cccccceeEEeccccHHHHhcCchHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999888754433 23345
Q ss_pred hhHHHHHHHHHHHHhhhccccceEEEeccCCCCcEEEEecCCCchHHHHHHHHHhhccccccccccccccceeeCCCChH
Q psy15683 80 EDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSI 159 (304)
Q Consensus 80 ~~~~~~~~L~~~~k~~L~~~v~~V~vS~rL~~sPa~iv~~e~~~s~~M~rim~~~~~~~~~~~~~~~~k~~LEINp~Hpl 159 (304)
+.+.++++|++++|++|+++|++|++|+||+++|||++++..+|+.+|+|+|++|++.. +..+++|||||+||+
T Consensus 499 ~~~~~~~~~~~~~k~~L~~~vk~Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~~------~~~k~ilEiNp~h~l 572 (623)
T COG0326 499 EEKKEFKPLLERVKEILGDKVKDVRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQEV------PESKKILEINPNHPL 572 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCccceeEeecccCCCcceeecCccchhHHHHHHHHhccccC------CccccceeeCcccHH
Confidence 56678999999999999999999999999999999999999999999999999998432 257999999999999
Q ss_pred HHHHHhhhhcccCcHHHHHHHHHhhhhhhhcCCCCCCChHHHHHHHHHHHHhhc
Q psy15683 160 VETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGL 213 (304)
Q Consensus 160 I~~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm~k~L 213 (304)
|++|.... +...+++++++||++|+|.+|++++||..|++|++++|.+.+
T Consensus 573 v~~L~~~~----d~~~~~~~~~llydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 573 VKKLASLE----DEASVADLVELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred HHHHHhcc----cHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 99999874 445699999999999999999999999999999999998765
No 7
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=4.1e-46 Score=378.78 Aligned_cols=203 Identities=40% Similarity=0.699 Sum_probs=180.6
Q ss_pred CCCCCceEEEEECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccCCCCCCC-chHHHhhhh
Q psy15683 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE-DEEEKKKRE 79 (304)
Q Consensus 1 Mk~~Qk~IYYi~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~~~~~~~-~ee~k~~~~ 79 (304)
|+++|+.|||++|+|++++++|||+|.|+++|+||||+++|+|+|++++|.+|+|++|++|++.++++.+ +++++...+
T Consensus 409 m~~~q~~Iyy~~~~~~~~~~~sp~~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 488 (613)
T PRK05218 409 MKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKE 488 (613)
T ss_pred CcCCCceEEEEeCCCHHHHHhChHHHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999987764 221222223
Q ss_pred hhHHHHHHHHHHHHhhhccccceEEEeccCCCCcEEEEecCCCchHHHHHHHHHhhccccccccccccccceeeCCCChH
Q psy15683 80 EDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSI 159 (304)
Q Consensus 80 ~~~~~~~~L~~~~k~~L~~~v~~V~vS~rL~~sPa~iv~~e~~~s~~M~rim~~~~~~~~~~~~~~~~k~~LEINp~Hpl 159 (304)
..++++++|++|+|++|+++|.+|++|.||+++||||+++++|++++|+|+|++|+. +++..+++|||||+|||
T Consensus 489 ~~~~~~~~l~~~~~~~L~~~v~~V~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~LeiNp~hpl 562 (613)
T PRK05218 489 EAEEEFKPLLERLKEALGDKVKDVRLSHRLTDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPILEINPNHPL 562 (613)
T ss_pred hhHHHHHHHHHHHHHHhcCcceEEEEeccCCCCCeEEEeCccchHHHHHHHHHhhhh------cccccceEEEEcCCCHH
Confidence 345689999999999999999999999999999999999999999999999998861 12346899999999999
Q ss_pred HHHHHhhhhcccCcHHHHHHHHHhhhhhhhcCCCCCCChHHHHHHHHHHHHhhc
Q psy15683 160 VETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGL 213 (304)
Q Consensus 160 I~~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm~k~L 213 (304)
|++|++.. + ++.++.++++||++|+|.+|+.++||..|++|++++|.+.+
T Consensus 563 I~~L~~~~--d--~~~~~~~~~~Lyd~AlL~~G~~~~d~~~~~~r~~~ll~~~~ 612 (613)
T PRK05218 563 VKKLADEA--D--EAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNELLLKLL 612 (613)
T ss_pred HHHHHhcc--C--hHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhh
Confidence 99998752 2 23499999999999999999999999999999999998765
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=297.64 Aligned_cols=195 Identities=18% Similarity=0.190 Sum_probs=158.5
Q ss_pred CCceEEEEECC-CHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhh-hcCCceeeeccCCCC--CCCchHHHhhhh
Q psy15683 4 NQKQIYYITGE-TKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKD-YDGKTLVSVTKEGLE--LPEDEEEKKKRE 79 (304)
Q Consensus 4 ~Qk~IYYi~g~-s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e-~~g~kf~~v~~~~~~--~~~~ee~k~~~~ 79 (304)
.|+.|||++|+ ++.++. +.|++||+|||++++|||||++++|.+ |+|++|++|+++++. ++..+ .
T Consensus 386 r~~~IyY~~~~~~~~~~~-----~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~------~ 454 (601)
T PRK14083 386 RHGVIRYTSSVDEFRQLA-----PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLT------P 454 (601)
T ss_pred hCCeEEEEcCHHHHHHHH-----HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccc------h
Confidence 36789999996 777665 799999999999999999999999998 999999999998764 32211 1
Q ss_pred hhHHHHHHHHHHHHhhhccccceE-EEeccCCCCcEEEEecCCCchHHHHHHHHHhhccccc--------c-cccccccc
Q psy15683 80 EDKVKFENLCKVMKDILDKKVEKV-IVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTS--------T-MGYMAAKK 149 (304)
Q Consensus 80 ~~~~~~~~L~~~~k~~L~~~v~~V-~vS~rL~~sPa~iv~~e~~~s~~M~rim~~~~~~~~~--------~-~~~~~~k~ 149 (304)
..++++++|++|+|++|++++.+| ++|.||+++||||+++++ .+|+|+|++++.+.++ + ..++..++
T Consensus 455 ~~~~~~~~l~~~~~~~L~~~~~~v~~~s~rl~~~Pa~~v~~e~---~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 531 (601)
T PRK14083 455 EEELALRPFLAEAREVLAPFGCDVVIRHFEPADLPALYLHDRA---AQHSREREEAVEEADDLWADILGSLDESQPAPRA 531 (601)
T ss_pred hhHHHHHHHHHHHHHHhCccceEEEEEcCCCCCCCEEEEeCch---hHHHHHHHhhhhhcccchhhhhhhhhhcccccCe
Confidence 235579999999999999975555 778899999999999984 4788887654211110 0 12335789
Q ss_pred ceeeCCCChHHHHHHhhhhcccCcHHHHHHHHHhhhhhhhcCCCCCC--ChHHHHHHHHHHHHhhcCCC
Q psy15683 150 HLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLE--EPQVHAARIHRMIKLGLGIE 216 (304)
Q Consensus 150 ~LEINp~HplI~~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~--d~~~f~~Ri~~lm~k~Lein 216 (304)
+|||||+||||++|.+. .+++.+++++++||++|+|.+|+++. +|+.|.++++++|..+|+.+
T Consensus 532 ~LeiN~~hpli~~l~~~----~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~ 596 (601)
T PRK14083 532 RLVLNLRNPLVRRLATL----GDPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDAD 596 (601)
T ss_pred EEEECCCCHHHHHHHhc----cChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999775 24456899999999999999999888 99999999999999887643
No 9
>KOG0019|consensus
Probab=99.45 E-value=3.2e-16 Score=155.18 Aligned_cols=218 Identities=20% Similarity=0.220 Sum_probs=142.3
Q ss_pred EEEEECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccCCCCCCCchHHH-hhhhhhHHHHH
Q psy15683 8 IYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEK-KKREEDKVKFE 86 (304)
Q Consensus 8 IYYi~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~~~~~~~~ee~k-~~~~~~~~~~~ 86 (304)
.++.+..+.-.+.....-..-.+-+||++..-++.+.||+..+.||-...++......+-.-.++.-+ ...++.+.+..
T Consensus 433 rm~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~e 512 (656)
T KOG0019|consen 433 RMREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDE 512 (656)
T ss_pred hhcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHH
Confidence 34444444444455555666667788888888899999999999999999999988876543332211 11112222222
Q ss_pred HHHHHHHhhhccccceEEEeccCCCCcEEEEecCCCchHHHHHHHHHhhccccccccccccccceeeCCCChHHHHHHhh
Q psy15683 87 NLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQK 166 (304)
Q Consensus 87 ~L~~~~k~~L~~~v~~V~vS~rL~~sPa~iv~~e~~~s~~M~rim~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~ 166 (304)
....-+++ |-+ .+..+|.+ +|+.|+..+.|+.++..|+..+--....+...|.
T Consensus 513 e~k~efe~-lck-----~mK~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMk-------------------- 565 (656)
T KOG0019|consen 513 ESKKEFEE-LCK-----WMKEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMK-------------------- 565 (656)
T ss_pred HHHHHHHH-HHH-----HHHHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHh--------------------
Confidence 22222222 222 34467877 8889888999999999987654312222111111
Q ss_pred hhcccCcHHHHHHHHHhhhhhhhcCCCCCCChHHHHHHHHHHHHhhcCCCCCcccccCCCccCCCCCCcccccchhhhhH
Q psy15683 167 ADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRME 246 (304)
Q Consensus 167 ~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm~k~Lein~~~~~~e~~~~~~~~~~~~e~~~~~e~~~e 246 (304)
|+.|-|+..+ |+ + .-++.|++||+||+++.+. ..++++ ..+
T Consensus 566 -------------Aqal~d~s~~--~y--------m-----~~kk~lEINP~hpivk~L~------~~~~~d-----k~d 606 (656)
T KOG0019|consen 566 -------------AQALTDNETM--GY--------M-----KAKKHLEINPDHPLVKTLR------QLRESD-----KND 606 (656)
T ss_pred -------------hhhccccChh--hh--------c-----cccceeeeCCCChHHHHHH------HHHhcC-----cch
Confidence 1112222111 11 1 1158999999999999752 333332 333
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHHhcCCCCchh
Q psy15683 247 EAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDED 292 (304)
Q Consensus 247 e~~~~~a~lL~~tAll~~G~~l~dp~~fa~ri~~~l~~~l~~~~~~ 292 (304)
.+++++.+||+||||++||+++||+.|+.|||+||.++||++++.
T Consensus 607 -~~k~lv~llfetALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~ 651 (656)
T KOG0019|consen 607 -TAKDLVEQLYETALISAGFSLDDPQTMVGRINRLLKSGLGRDEDE 651 (656)
T ss_pred -hHHHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHHHHHhccCCCc
Confidence 789999999999999999999999999999999999999998754
No 10
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=99.34 E-value=4.1e-13 Score=135.15 Aligned_cols=97 Identities=29% Similarity=0.424 Sum_probs=71.7
Q ss_pred hhhhhcCCCCCCChHHHHHHHHHHHH-------------hhcCCCCCcccccCCCccCCCCCCcccccchhhhhHHHHHH
Q psy15683 185 ETSLLSSGFTLEEPQVHAARIHRMIK-------------LGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEAVKD 251 (304)
Q Consensus 185 d~AlL~~G~~~~d~~~f~~Ri~~lm~-------------k~Lein~~~~~~e~~~~~~~~~~~~e~~~~~e~~~ee~~~~ 251 (304)
.+|||+.+. ...+.-++|+.+++. ++|+|||.||++..+. .....+ ..++.+++
T Consensus 394 sPa~lv~~e--~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~------~~~~~d-----~~d~~~~~ 460 (531)
T PF00183_consen 394 SPAVLVSSE--YGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLL------KLVEKD-----EDDELAKD 460 (531)
T ss_dssp SSEEEEE-S--SSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHH------HHHHCC-----TTHHHHHH
T ss_pred Ccceeeccc--chhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHH------hhhccc-----chhhHHHH
Confidence 677787665 456777888888652 6899999999998752 112222 33446889
Q ss_pred HHHHHHhhhhccCCCCCCCHHHHHHHHHHHHHhcCCCCchhhH
Q psy15683 252 LVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDEDEV 294 (304)
Q Consensus 252 ~a~lL~~tAll~~G~~l~dp~~fa~ri~~~l~~~l~~~~~~~~ 294 (304)
+|++|||+|+|++||+++||++|++||++||+.+||++..+.+
T Consensus 461 la~~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~~~ 503 (531)
T PF00183_consen 461 LAEQLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDAEV 503 (531)
T ss_dssp HHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STTTT
T ss_pred HHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCCcc
Confidence 9999999999999999999999999999999999999865443
No 11
>KOG0020|consensus
Probab=99.31 E-value=1.8e-12 Score=126.04 Aligned_cols=74 Identities=30% Similarity=0.454 Sum_probs=63.8
Q ss_pred HhhcCCCCCcccccCCCccCCCCCCcccccchhhhhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHHhcCCCC
Q psy15683 210 KLGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIE 289 (304)
Q Consensus 210 ~k~Lein~~~~~~e~~~~~~~~~~~~e~~~~~e~~~ee~~~~~a~lL~~tAll~~G~~l~dp~~fa~ri~~~l~~~l~~~ 289 (304)
++.|+|||+||++.++ ..++.++ ..++.++++|.+||+||+|+|||.+.||.+|+.||++||+.+|||+
T Consensus 679 Kkt~EINPRHPlirel------l~Ri~ad-----eeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is 747 (785)
T KOG0020|consen 679 KKTFEINPRHPLIREL------LRRIAAD-----EEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNIS 747 (785)
T ss_pred CceeeeCCCChHHHHH------HHHhhcC-----cccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCC
Confidence 3789999999999874 3566655 3344789999999999999999999999999999999999999999
Q ss_pred chhhH
Q psy15683 290 DEDEV 294 (304)
Q Consensus 290 ~~~~~ 294 (304)
+++.+
T Consensus 748 ~Da~v 752 (785)
T KOG0020|consen 748 PDAQV 752 (785)
T ss_pred ccccc
Confidence 86654
No 12
>PTZ00130 heat shock protein 90; Provisional
Probab=99.21 E-value=7.4e-12 Score=129.94 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=76.7
Q ss_pred HhhhhhhhcCCCCCCChHHHHHHHHHHH------------HhhcCCCCCcccccCCCccCCCCCCcccccchhhhhHHHH
Q psy15683 182 LLFETSLLSSGFTLEEPQVHAARIHRMI------------KLGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEAV 249 (304)
Q Consensus 182 ~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm------------~k~Lein~~~~~~e~~~~~~~~~~~~e~~~~~e~~~ee~~ 249 (304)
+-=++|||+.+. .+++..++|+.+.+ +++|+|||.||++..+. .....+ ..++.+
T Consensus 653 L~~sPa~lv~~e--~g~s~~Merimka~~~~~~~~~~~~~k~iLEINp~Hpii~~L~------~~~~~~-----~~~~~~ 719 (814)
T PTZ00130 653 LVDAPCAVVSTE--WGLSGQMEKLMKINVNNSDQIKAMSGQKILEINPDHPIMIDLL------KRSVSN-----PKDSQL 719 (814)
T ss_pred CCCCCcEEEecC--ccccHHHHHHHHHhhccccccccccCCeEEEECCCCHHHHHHH------HHHhcC-----cchHHH
Confidence 334678888865 57888888887775 26799999999998751 111111 122348
Q ss_pred HHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHHhcCCCCchh
Q psy15683 250 KDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDED 292 (304)
Q Consensus 250 ~~~a~lL~~tAll~~G~~l~dp~~fa~ri~~~l~~~l~~~~~~ 292 (304)
+++|++||++|+|++||.++||+.|++||++||..+||+++.+
T Consensus 720 ~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~ 762 (814)
T PTZ00130 720 TESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNL 762 (814)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccc
Confidence 8999999999999999999999999999999999999988643
No 13
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.18 E-value=1.2e-11 Score=127.79 Aligned_cols=97 Identities=36% Similarity=0.500 Sum_probs=75.8
Q ss_pred hhhhhhcCCCCCCChHHHHHHHHHHHH-------------hhcCCCCCcccccCCCccCCCCCCcccccchhhhhHHHHH
Q psy15683 184 FETSLLSSGFTLEEPQVHAARIHRMIK-------------LGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEAVK 250 (304)
Q Consensus 184 yd~AlL~~G~~~~d~~~f~~Ri~~lm~-------------k~Lein~~~~~~e~~~~~~~~~~~~e~~~~~e~~~ee~~~ 250 (304)
=.+|||+.+. .++..-++|+.+.+. ++|+|||+||+++.+. .....+ ..++.++
T Consensus 566 ~sPa~lv~~e--~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~------~~~~~~-----~~~~~~~ 632 (701)
T PTZ00272 566 TSPCILVTSE--FGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELR------RRVGAD-----ENDKAVK 632 (701)
T ss_pred CCCeEEEecc--cchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHH------HHhhcc-----cchHHHH
Confidence 4578888876 577888888876542 5799999999998752 111111 1223478
Q ss_pred HHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHHhcCCCCchhh
Q psy15683 251 DLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDEDE 293 (304)
Q Consensus 251 ~~a~lL~~tAll~~G~~l~dp~~fa~ri~~~l~~~l~~~~~~~ 293 (304)
++|++|||+|+|++||.++||.+|++|+++||+.+||++..+.
T Consensus 633 ~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~ 675 (701)
T PTZ00272 633 DLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEE 675 (701)
T ss_pred HHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCcccc
Confidence 9999999999999999999999999999999988999987544
No 14
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.7e-09 Score=109.30 Aligned_cols=90 Identities=23% Similarity=0.293 Sum_probs=75.8
Q ss_pred HHHhhhhhhhcCCCCCCChHHHHHHHHHHHH-------hhcCCCCCcccccCCCccCCCCCCcccccchhhhhHHHHHHH
Q psy15683 180 VNLLFETSLLSSGFTLEEPQVHAARIHRMIK-------LGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEAVKDL 252 (304)
Q Consensus 180 ~~~Lyd~AlL~~G~~~~d~~~f~~Ri~~lm~-------k~Lein~~~~~~e~~~~~~~~~~~~e~~~~~e~~~ee~~~~~ 252 (304)
-++-=++|||..+. .++...++|+.+.++ .+|++||.||++..++.. . ++..+.++
T Consensus 526 ~rl~dspa~l~~~~--~~~~~~m~r~l~~~~~~~~~~k~ilEiNp~h~lv~~L~~~-------~--------d~~~~~~~ 588 (623)
T COG0326 526 HRLTDSPACLTTDG--ADLSTQMERLLKAQGQEVPESKKILEINPNHPLVKKLASL-------E--------DEASVADL 588 (623)
T ss_pred cccCCCcceeecCc--cchhHHHHHHHHhccccCCccccceeeCcccHHHHHHHhc-------c--------cHHHHHHH
Confidence 34556789999887 799999999999886 689999999999875211 1 22358899
Q ss_pred HHHHHhhhhccCCCCCCCHHHHHHHHHHHHHhcC
Q psy15683 253 VNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGL 286 (304)
Q Consensus 253 a~lL~~tAll~~G~~l~dp~~fa~ri~~~l~~~l 286 (304)
+++||++|+|++|++++||++|++|++++|.+++
T Consensus 589 ~~llydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 589 VELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998865
No 15
>PRK05218 heat shock protein 90; Provisional
Probab=98.51 E-value=8.3e-08 Score=98.70 Aligned_cols=86 Identities=20% Similarity=0.311 Sum_probs=63.3
Q ss_pred hhhhhcCCCCCCChHHHHHHHHHHH-------HhhcCCCCCcccccCCCccCCCCCCcccccchhhhhHHHHHHHHHHHH
Q psy15683 185 ETSLLSSGFTLEEPQVHAARIHRMI-------KLGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEAVKDLVNLLF 257 (304)
Q Consensus 185 d~AlL~~G~~~~d~~~f~~Ri~~lm-------~k~Lein~~~~~~e~~~~~~~~~~~~e~~~~~e~~~ee~~~~~a~lL~ 257 (304)
.+|||+.+. .....-++|+.+.+ ++.|++||+||++..+. . .. + .. .+++++++||
T Consensus 521 ~Pa~~v~~~--~~~~~~mer~~~~~~~~~~~~~~~LeiNp~hplI~~L~------~-~~-d-----~~--~~~~~~~~Ly 583 (613)
T PRK05218 521 SPACLVADE--GDMSTQMEKLLKAAGQEVPESKPILEINPNHPLVKKLA------D-EA-D-----EA--KFKDLAELLY 583 (613)
T ss_pred CCeEEEeCc--cchHHHHHHHHHhhhhcccccceEEEEcCCCHHHHHHH------h-cc-C-----hH--HHHHHHHHHH
Confidence 567776543 23344455554422 26799999999998762 1 11 1 11 2889999999
Q ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHhcCC
Q psy15683 258 ETSLLSSGFTLEEPQVLAARIHRMIKLGLG 287 (304)
Q Consensus 258 ~tAll~~G~~l~dp~~fa~ri~~~l~~~l~ 287 (304)
++|+|++||+++||..|+.|+++||...++
T Consensus 584 d~AlL~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 584 DQALLAEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999988764
No 16
>PRK14083 HSP90 family protein; Provisional
Probab=98.04 E-value=2.2e-06 Score=87.92 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=54.3
Q ss_pred hhcCCCCCcccccCCCccCCCCCCcccccchhhhhHHHHHHHHHHHHhhhhccCCCCCC--CHHHHHHHHHHHHHhcCCC
Q psy15683 211 LGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEAVKDLVNLLFETSLLSSGFTLE--EPQVLAARIHRMIKLGLGI 288 (304)
Q Consensus 211 k~Lein~~~~~~e~~~~~~~~~~~~e~~~~~e~~~ee~~~~~a~lL~~tAll~~G~~l~--dp~~fa~ri~~~l~~~l~~ 288 (304)
++|++||+||++..+. . . . .++.+++++++||++|+|.+|++++ +|+.|+.++++||..+|+-
T Consensus 531 ~~LeiN~~hpli~~l~------~-~-~-------d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~ 595 (601)
T PRK14083 531 ARLVLNLRNPLVRRLA------T-L-G-------DPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDA 595 (601)
T ss_pred eEEEECCCCHHHHHHH------h-c-c-------ChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 6799999999998752 1 1 1 1124789999999999999999999 9999999999999999875
Q ss_pred Cc
Q psy15683 289 ED 290 (304)
Q Consensus 289 ~~ 290 (304)
+.
T Consensus 596 ~~ 597 (601)
T PRK14083 596 DI 597 (601)
T ss_pred CC
Confidence 53
No 17
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=68.40 E-value=5.7 Score=33.68 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.2
Q ss_pred eeeCCCChHHHHHHhhhhcccCc
Q psy15683 151 LEINPDHSIVETLRQKADADKND 173 (304)
Q Consensus 151 LEINp~HplI~~L~~~~~~~~~~ 173 (304)
=+.+|+||+|++|..+...+..+
T Consensus 16 E~d~p~~plv~~~~~L~q~Nms~ 38 (147)
T PF06112_consen 16 EADYPNHPLVAKLQALPQNNMSD 38 (147)
T ss_pred cccCCCCHHHHHHHhhccCCCCH
Confidence 36899999999999887655443
No 18
>KOG0541|consensus
Probab=48.45 E-value=19 Score=31.15 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=29.7
Q ss_pred hHHHHHhcCCEEEEeCCCchHHHHHHHh-hh---cCCceee
Q psy15683 24 FVERVKKRGFEVIYMTEPIDEYVVQQLK-DY---DGKTLVS 60 (304)
Q Consensus 24 ~lE~~k~kg~EVL~l~d~iDe~~i~~l~-e~---~g~kf~~ 60 (304)
+.+.|++||++++++..--|.|+++.-. .+ +..+|..
T Consensus 70 ~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f~a 110 (171)
T KOG0541|consen 70 KADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKFVA 110 (171)
T ss_pred HHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEEEe
Confidence 6788999999999999999999998763 44 3445554
No 19
>KOG0547|consensus
Probab=44.89 E-value=21 Score=36.35 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=43.0
Q ss_pred ccceeeCCCChHHHHHHhhhhcccCcHHHHHHHHHhhhh--hhhcCCCCCCChHHHHHHHHHHHH
Q psy15683 148 KKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFET--SLLSSGFTLEEPQVHAARIHRMIK 210 (304)
Q Consensus 148 k~~LEINp~HplI~~L~~~~~~~~~~~~~~~~~~~Lyd~--AlL~~G~~~~d~~~f~~Ri~~lm~ 210 (304)
.+-||+||+| +|.|+++..+ .+.......-|+|. .||.+||.-.....|+.|+.+...
T Consensus 173 TkALEl~P~Y--~KAl~RRA~A---~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 173 TKALELNPDY--VKALLRRASA---HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred HHHhhcCcHH--HHHHHHHHHH---HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 3679999998 5778877533 34566777778876 477799976677889999988654
No 20
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=40.31 E-value=23 Score=30.52 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=24.5
Q ss_pred eEEEEECCCHHHHhcChhHHHHHhcCC
Q psy15683 7 QIYYITGETKDQVANSSFVERVKKRGF 33 (304)
Q Consensus 7 ~IYYi~g~s~~~~~~sP~lE~~k~kg~ 33 (304)
-|.||+|++-..-.+.|+++++++.++
T Consensus 41 viq~iAGr~sake~N~~l~~aik~a~f 67 (160)
T PF09695_consen 41 VIQHIAGRSSAKEMNAPLIEAIKAAKF 67 (160)
T ss_pred EEEEeccCCchhHhhHHHHHHHHHcCC
Confidence 489999999998999999999999865
No 21
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=39.32 E-value=86 Score=26.48 Aligned_cols=57 Identities=11% Similarity=0.241 Sum_probs=40.4
Q ss_pred ChHHHHHHhhhhcccCcHHHHHHHHHhhhhh---hhcCCC--CCCChHHHHHHHHHHHHhhcCCC
Q psy15683 157 HSIVETLRQKADADKNDKAVKDLVNLLFETS---LLSSGF--TLEEPQVHAARIHRMIKLGLGIE 216 (304)
Q Consensus 157 HplI~~L~~~~~~~~~~~~~~~~~~~Lyd~A---lL~~G~--~~~d~~~f~~Ri~~lm~k~Lein 216 (304)
||.|+.+.++++ ++..+..++.+.|++. .--.|. .+.|-..|+.-++.+|..+=+.+
T Consensus 2 ~p~vqefk~lIe---~dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~~ 63 (141)
T PF12588_consen 2 HPVVQEFKDLIE---SDPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEFS 63 (141)
T ss_pred ChHHHHHHHHHh---cCHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCCccc
Confidence 899999999985 3457888999999881 112332 25777888888888887544444
No 22
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=36.82 E-value=48 Score=30.67 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=37.8
Q ss_pred eEEEEECCCHHHHhcC-hhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccC
Q psy15683 7 QIYYITGETKDQVANS-SFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKE 64 (304)
Q Consensus 7 ~IYYi~g~s~~~~~~s-P~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~ 64 (304)
+||.++|+.--.+... ...+.|.++|+||.+++.+=. . ...+-+-.|.++..+.-.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~-~-~~~~~~~~g~~~~~i~~~ 58 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRG-L-EKRLVPKAGIEFYFIPVG 58 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCc-c-hhcccccCCCceEEEecc
Confidence 6999999887666543 789999999999998875321 1 111212247777777654
No 23
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=32.96 E-value=23 Score=37.18 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=14.9
Q ss_pred ccceee-CCCChHHHHHHhh
Q psy15683 148 KKHLEI-NPDHSIVETLRQK 166 (304)
Q Consensus 148 k~~LEI-Np~HplI~~L~~~ 166 (304)
-+-+|+ ||||||.|||+..
T Consensus 467 ~rL~ELsnpNhPLLkkll~E 486 (700)
T COG1480 467 FRLLELSNPNHPLLKKLLTE 486 (700)
T ss_pred hhHHHhcCCCcHHHHHHHhh
Confidence 345554 9999999999865
No 24
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=31.49 E-value=57 Score=31.80 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=35.1
Q ss_pred hcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccCCCCC
Q psy15683 20 ANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLEL 68 (304)
Q Consensus 20 ~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~~~~~ 68 (304)
.++|+..-|+++|+-|+|..|.+|+-++...+ .++.++|+..+.+
T Consensus 296 ~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~----rql~~~dk~~iaF 340 (360)
T PF07429_consen 296 RDNPFWQDLKEQGIPVLFYGDELDEALVREAQ----RQLANVDKQQIAF 340 (360)
T ss_pred cCChHHHHHHhCCCeEEeccccCCHHHHHHHH----HHHhhCcccceee
Confidence 35799999999999999999999999998653 2345566655544
No 25
>PF03562 MltA: MltA specific insert domain; InterPro: IPR005300 This group of proteins includes MltA; a membrane-bound, murein degrading transglycosylase enzyme which plays an important role in the controlled growth of the stress-bearing sacculus of Escherichia coli [, ].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 2PI8_D 2AE0_X 2PIC_A 2GAE_A 2PJJ_A 3CZB_A 2G6G_A 2PNW_A 2G5D_A.
Probab=30.62 E-value=37 Score=29.21 Aligned_cols=34 Identities=18% Similarity=0.624 Sum_probs=24.3
Q ss_pred EECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHH
Q psy15683 11 ITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQ 48 (304)
Q Consensus 11 i~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~ 48 (304)
+--.+|+++.+. .+..+|.|+.++.||+|-|+++
T Consensus 50 ~Py~tR~eIe~g----~l~~~~~eiaw~~dpvd~fflq 83 (158)
T PF03562_consen 50 VPYPTRAEIEDG----ALDGKGLEIAWLKDPVDAFFLQ 83 (158)
T ss_dssp EEG--HHHHHTT----TTTTSSCEEEEES-HHHHHHHH
T ss_pred ccCCCHHHHhcC----cccCCCCEEEEeCChHHhHHee
Confidence 444577777733 2556999999999999999998
No 26
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=28.35 E-value=98 Score=24.53 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=31.6
Q ss_pred EEECCCHHHHh-cChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeeeccC
Q psy15683 10 YITGETKDQVA-NSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKE 64 (304)
Q Consensus 10 Yi~g~s~~~~~-~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v~~~ 64 (304)
.+++.++-.+. --+..+.++++|+||.+.+.+-=+-.+ +-.|..|..++.+
T Consensus 3 i~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v----~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 3 IATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERV----EAAGLEFVPIPGD 54 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHH----HHTT-EEEESSSC
T ss_pred EEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecc----cccCceEEEecCC
Confidence 44444443331 124457899999999998887544443 4478899888776
No 27
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=27.88 E-value=64 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCCceEEEEECCCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHHH
Q psy15683 3 ENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQ 49 (304)
Q Consensus 3 ~~Qk~IYYi~g~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~ 49 (304)
-.|+..-|...+-.+.+ .=+|+.|++.|++|||..-|+-..|...
T Consensus 22 ~~~~~~~y~~SpEy~Dl--~l~L~~~k~~g~~~lfVi~PvNg~wydy 66 (130)
T PF04914_consen 22 GSQKNFSYTKSPEYDDL--QLLLDVCKELGIDVLFVIQPVNGKWYDY 66 (130)
T ss_dssp TTTTS---SS-THHHHH--HHHHHHHHHTT-EEEEEE----HHHHHH
T ss_pred cccccccccCCccHHHH--HHHHHHHHHcCCceEEEecCCcHHHHHH
Confidence 34555666665544444 3589999999999999999999988875
No 28
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.05 E-value=61 Score=32.39 Aligned_cols=28 Identities=14% Similarity=0.455 Sum_probs=24.1
Q ss_pred ChhHHHHHhcCCEEEEeCCCchHHHHHH
Q psy15683 22 SSFVERVKKRGFEVIYMTEPIDEYVVQQ 49 (304)
Q Consensus 22 sP~lE~~k~kg~EVL~l~d~iDe~~i~~ 49 (304)
-...|.|+++|..|||+-|.+=-|.+-+
T Consensus 242 t~IAEyFRDqG~~VLL~mDSlTRfA~Aq 269 (441)
T COG1157 242 TTIAEYFRDQGKRVLLIMDSLTRFAMAQ 269 (441)
T ss_pred HHHHHHHHhCCCeEEEEeecHHHHHHHH
Confidence 3456999999999999999999998753
No 29
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=25.77 E-value=52 Score=23.15 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=25.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCCCch
Q psy15683 262 LSSGFTLEEPQVLAARIHRMIKLGLGIEDE 291 (304)
Q Consensus 262 l~~G~~l~dp~~fa~ri~~~l~~~l~~~~~ 291 (304)
+..|.+.+.-.+++++|++.+...+|++.+
T Consensus 8 l~~grt~eqk~~l~~~it~~l~~~lg~p~~ 37 (64)
T PRK01964 8 LLEGRPEEKIKNLIREVTEAISATLDVPKE 37 (64)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHhCcChh
Confidence 456888888889999999999999999963
No 30
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=24.82 E-value=45 Score=32.46 Aligned_cols=31 Identities=16% Similarity=0.518 Sum_probs=26.1
Q ss_pred CCHHHHhcChhHHHHHhcCCEEEEeCCCchHHHHH
Q psy15683 14 ETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQ 48 (304)
Q Consensus 14 ~s~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~ 48 (304)
++|+++.+. .+..+|+|+.++.||||-|+++
T Consensus 151 ptRaeI~~g----aL~g~gleLaw~~dpvD~Fflq 181 (355)
T PRK11162 151 PSRAEIYAG----ALSGKGLELAYSNSLIDNFIME 181 (355)
T ss_pred CCHHHHhcC----cccCCCCEEEEeCCHHHhHhee
Confidence 488888753 4667999999999999999994
No 31
>PRK03094 hypothetical protein; Provisional
Probab=24.78 E-value=67 Score=24.51 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=22.0
Q ss_pred ChhHHHHHhcCCEEEEeCC-----CchHHHHHHH
Q psy15683 22 SSFVERVKKRGFEVIYMTE-----PIDEYVVQQL 50 (304)
Q Consensus 22 sP~lE~~k~kg~EVL~l~d-----~iDe~~i~~l 50 (304)
|+.-+.|+++||+|.-|.. ++|-.+++..
T Consensus 11 s~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~ 44 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQ 44 (80)
T ss_pred HHHHHHHHHCCCEEEecCcccccCCcCEEEEeCC
Confidence 4667899999999987754 4677776654
No 32
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.21 E-value=1.5e+02 Score=24.36 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=54.2
Q ss_pred EEEeCCCchHHH--HHHHhhhcCCceeeeccCCCCCCCchHHHhhhhhhHHHHHHHHHHH-HhhhccccceEEEeccCCC
Q psy15683 35 VIYMTEPIDEYV--VQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVM-KDILDKKVEKVIVSNRLVD 111 (304)
Q Consensus 35 VL~l~d~iDe~~--i~~l~e~~g~kf~~v~~~~~~~~~~ee~k~~~~~~~~~~~~L~~~~-k~~L~~~v~~V~vS~rL~~ 111 (304)
||+-+|.-|-.. +.-|..|.|.+|.--.+- +. -.+.+|+ ..+||+.-.++ .
T Consensus 4 vliR~Ds~~Kil~ALaDleRyagiki~gkPri-i~------------------p~~aD~~~~~ilGe~R~k~-------~ 57 (125)
T COG1844 4 VLIRADSYDKILTALADLERYAGIKIRGKPRI-IP------------------PELADEILSSILGEVRKKC-------K 57 (125)
T ss_pred EEEecCcHHHHHHHHHHHHHhcCceeecCCcc-cC------------------hhhHHHHHHHHHHHHhccc-------c
Confidence 455555555433 345678888887532221 11 0122232 35566532222 2
Q ss_pred CcEEEEecCCCchHHHHHHHHHhhccccccccccccccceeeCCCChHHHHHHhhhh
Q psy15683 112 SPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAD 168 (304)
Q Consensus 112 sPa~iv~~e~~~s~~M~rim~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~ 168 (304)
+ +|++.-+..-+....||-+- .++-++..|-|+|++.++|+.++.
T Consensus 58 ~-aa~a~v~~~a~~aI~rIr~I-----------HPPAHiIVIs~r~dvy~el~~~fg 102 (125)
T COG1844 58 V-AAVAEVEEPASKAIGRIRKI-----------HPPAHIIVISPRHDVYKELLRLFG 102 (125)
T ss_pred h-hheeeecCccHHHHHHHHhc-----------CCCceEEEeCCCchHHHHHHHHhc
Confidence 3 44444444446666666442 356789999999999999998763
No 33
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.77 E-value=3.1e+02 Score=20.44 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=42.6
Q ss_pred CCceEEEEECCCH-HHHhcChhHHHHHhcCCEEEEeCCCchHHHHHHHhhhcCCceeee
Q psy15683 4 NQKQIYYITGETK-DQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSV 61 (304)
Q Consensus 4 ~Qk~IYYi~g~s~-~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~e~~g~kf~~v 61 (304)
+.+.+|-++|.+. +.+..+|+.- +.|..|||..+.+++.+...|..+..++..=|
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a~---~~~~PIll~~~~l~~~~~~~l~~~~~~~v~ii 79 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLAA---KNNAPILLVNNSLPSSVKAFLKSLNIKKVYII 79 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHHH---hcCCeEEEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 4677999999885 4555566654 37889999999999999999988866666555
No 34
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=23.63 E-value=25 Score=21.78 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=12.4
Q ss_pred ccceeeCCCChHHHHHH
Q psy15683 148 KKHLEINPDHSIVETLR 164 (304)
Q Consensus 148 k~~LEINp~HplI~~L~ 164 (304)
++-+|+||+|+..-.-+
T Consensus 3 ~kAie~~P~n~~a~~nl 19 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNL 19 (34)
T ss_pred HHHHHHCCCCHHHHHHH
Confidence 46789999999764433
No 35
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=23.10 E-value=75 Score=24.21 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=21.6
Q ss_pred ChhHHHHHhcCCEEEEeCCC-----chHHHHHHH
Q psy15683 22 SSFVERVKKRGFEVIYMTEP-----IDEYVVQQL 50 (304)
Q Consensus 22 sP~lE~~k~kg~EVL~l~d~-----iDe~~i~~l 50 (304)
|+.-+.|+++||||.-|.+. +|-.+++..
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~ 44 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQ 44 (80)
T ss_pred hHHHHHHHHCCCEEEecCCccccCCcCEEEEECC
Confidence 46678899999999988753 566665543
No 36
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.22 E-value=1.8e+02 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.418 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhhccCCCC-CCCHHHHHHHHHHHHHhc
Q psy15683 247 EAVKDLVNLLFETSLLSSGFT-LEEPQVLAARIHRMIKLG 285 (304)
Q Consensus 247 e~~~~~a~lL~~tAll~~G~~-l~dp~~fa~ri~~~l~~~ 285 (304)
+.++++.+-||+...+.+.|. .........+|+.++...
T Consensus 3 ~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L 42 (128)
T PF09748_consen 3 QQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSL 42 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence 468899999999999999997 677778889999887654
Done!