RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15683
(304 letters)
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 367 bits (943), Expect = e-125
Identities = 159/247 (64%), Positives = 200/247 (80%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE QK IYYITGE+K QV S F+ER+KK+G+EV+YMT+PIDEY +QQLK+++GK LV+
Sbjct: 281 MKEGQKDIYYITGESKKQVEKSPFLERLKKKGYEVLYMTDPIDEYAMQQLKEFEGKKLVN 340
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
VTKEGL+L E EEEKKKREE K +FE LCK MKDIL KVEKV+VSNRLVDSPC +VTSQ
Sbjct: 341 VTKEGLKLEESEEEKKKREELKKEFEELCKWMKDILGDKVEKVVVSNRLVDSPCALVTSQ 400
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLV 180
YGW+ANMERIMKAQALRD+S YM++KK LEINP H I++ LR++ +ADKNDK VKDL
Sbjct: 401 YGWSANMERIMKAQALRDSSMSAYMSSKKTLEINPRHPIIKELRKRVEADKNDKTVKDLA 460
Query: 181 NLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGEAE 240
LL+ET+LL+SGF+LE+P+ A+RI+RMIKLGL I++++EV D+ + E
Sbjct: 461 RLLYETALLTSGFSLEDPKAFASRIYRMIKLGLSIDEDEEVEEEDEEAEVETTEPAEEDA 520
Query: 241 DASRMEE 247
+ S+MEE
Sbjct: 521 EDSKMEE 527
Score = 71.0 bits (174), Expect = 1e-13
Identities = 31/60 (51%), Positives = 45/60 (75%), Gaps = 5/60 (8%)
Query: 235 AEGEAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDEDEV 294
E + D + VKDL LL+ET+LL+SGF+LE+P+ A+RI+RMIKLGL I++++EV
Sbjct: 447 VEADKND-----KTVKDLARLLYETALLTSGFSLEDPKAFASRIYRMIKLGLSIDEDEEV 501
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 271 bits (694), Expect = 6e-86
Identities = 128/220 (58%), Positives = 174/220 (79%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MK QK IYYITG++K ++ S F+E+ ++RG EV++MTEPIDEYV+QQ+KD++ K
Sbjct: 456 MKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFAC 515
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
+TKEG+ E EEEK++REE+K E LCK MK++L KVEKVIVS RL SPC +VTS+
Sbjct: 516 LTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSE 575
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLV 180
+GW+A+ME+IM+ QALRD+S YM +KK +E+NP H I++ LR++ AD+NDKAVKDLV
Sbjct: 576 FGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLV 635
Query: 181 NLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDE 220
LLF+TSLL+SGF LE+P +A RI+RMIKLGL +++E+E
Sbjct: 636 FLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEE 675
Score = 66.2 bits (161), Expect = 4e-12
Identities = 32/53 (60%), Positives = 42/53 (79%)
Query: 241 DASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDEDE 293
A ++AVKDLV LLF+TSLL+SGF LE+P A RI+RMIKLGL +++E+E
Sbjct: 623 GADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEE 675
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 213 bits (544), Expect = 1e-64
Identities = 84/215 (39%), Positives = 134/215 (62%), Gaps = 11/215 (5%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE QK+IYYITG++++ NS +E KK+G EV+ +T+PIDE+ + L+++DGK S
Sbjct: 409 MKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKS 468
Query: 61 VTKEGLELP-EDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTS 119
V + L+L EDEEEK+++EE + +F+ L + +K+ L KV+ V +S+RL DSP C+V
Sbjct: 469 VARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVRLSHRLTDSPACLVAD 528
Query: 120 QYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDL 179
+ + ME+++KA +K LEINP+H +V+ L +AD K KDL
Sbjct: 529 EGDMSTQMEKLLKAAG------QEVPESKPILEINPNHPLVKKLADEADEAK----FKDL 578
Query: 180 VNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLG 214
LL++ +LL+ G +LE+P R++ ++ L
Sbjct: 579 AELLYDQALLAEGGSLEDPAAFVKRLNELLLKLLA 613
Score = 36.2 bits (85), Expect = 0.016
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 246 EEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLG 287
E KDL LL++ +LL+ G +LE+P R++ ++ L
Sbjct: 572 EAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNELLLKLLA 613
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 199 bits (509), Expect = 2e-59
Identities = 84/214 (39%), Positives = 127/214 (59%), Gaps = 11/214 (5%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE QKQIYYITGE+ S +E K +G EV+ +T+ IDE+++ L +++GK S
Sbjct: 419 MKEGQKQIYYITGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKS 478
Query: 61 VTKEGLELPEDEEE-KKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTS 119
+TK L+L EEE + EE+K +F+ L + +K+IL KV+ V +S+RL DSP C+ T
Sbjct: 479 ITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKDVRLSHRLTDSPACLTTD 538
Query: 120 QYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDL 179
+ MER++KAQ +KK LEINP+H +V+ L D + +V DL
Sbjct: 539 GADLSTQMERLLKAQGQEVP------ESKKILEINPNHPLVKKLASLED----EASVADL 588
Query: 180 VNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGL 213
V LL++ +LL+ G LE+P R++ ++ L
Sbjct: 589 VELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622
Score = 40.7 bits (96), Expect = 7e-04
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 246 EEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGL 286
E +V DLV LL++ +LL+ G LE+P R++ ++ L
Sbjct: 582 EASVADLVELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 130 bits (329), Expect = 6e-34
Identities = 74/249 (29%), Positives = 148/249 (59%), Gaps = 1/249 (0%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MK +QK IYY +G++ + ++ ++ KK+ +V+++TE +DE VQ++++YDGK S
Sbjct: 545 MKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKS 604
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
+ K + E+EKKK E+ K ++ L V+ D L ++ KV +S RLVD+PC +V+++
Sbjct: 605 IQKGEITFELTEDEKKKEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTE 664
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLV 180
+G + ME++MK + ++ + M+ +K LEINPDH I+ L +++ ++ D + + +
Sbjct: 665 WGLSGQMEKLMKIN-VNNSDQIKAMSGQKILEINPDHPIMIDLLKRSVSNPKDSQLTESI 723
Query: 181 NLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGEAE 240
++++++ L+SGF LE+ A ++ I LG+++ ++ D + + ++
Sbjct: 724 KIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLKIDDLDPAIFETKKIEQEDSP 783
Query: 241 DASRMEEAV 249
D + E +
Sbjct: 784 DGQKFHEEI 792
>gnl|CDD|237762 PRK14598, PRK14598, peptide deformylase; Provisional.
Length = 187
Score = 30.1 bits (68), Expect = 0.92
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 161 ETLRQKADADKN-DKAVKDLVNLLFETSLLSSGFTLEEPQV 200
E LRQKA K D +++L+ +FE+ +SG L PQV
Sbjct: 11 EVLRQKAKPLKGVDAEIEELIASMFESMYNASGIGLAAPQV 51
>gnl|CDD|162083 TIGR00878, purM, phosphoribosylaminoimidazole synthetase.
Alternate name: phosphoribosylformylglycinamidine
cyclo-ligase; AIRS; AIR synthase This enzyme is found as
a homodimeric monofunctional protein in prokaryotes and
as part of a larger, multifunctional protein, sometimes
with two copies of this enzyme in tandem, in eukaryotes
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 332
Score = 30.0 bits (68), Expect = 1.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 212 GLGIEDEDEVATGDDVKAGDIPVA 235
+G+ ++DE+ TG+ VK GD+ +
Sbjct: 154 AVGVVEKDEIITGEKVKPGDVLIG 177
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 480
Score = 30.0 bits (68), Expect = 1.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 201 HAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEAVK 250
A R+ ++ +G D E+A A D+PV E + D M+EAV
Sbjct: 389 AAGRLRGVVLIG---ADRAEIAEALARHAPDVPVVEVDRTDTGAMDEAVA 435
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 29.2 bits (66), Expect = 3.5
Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 14/171 (8%)
Query: 40 EPIDEYVVQQLKDYD---GKTLVSVTKEGLELPEDEEEKKKREEDKVK--------FENL 88
+ DE + YD + S+TKE +E E EKK++E +K+K E+L
Sbjct: 1075 DEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDL 1134
Query: 89 CKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAK 148
++ L+++ E + + K + + +S A
Sbjct: 1135 -DKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKAS 1193
Query: 149 KHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQ 199
N + R+ D N K+ + + + +
Sbjct: 1194 V--VGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKR 1242
>gnl|CDD|182075 PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.
Length = 120
Score = 27.5 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 164 RQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRM 208
R++ D D KA D +L +GF L++ QV R+ +M
Sbjct: 66 RRRRDLDNLQKAAFD--------ALTKAGFWLDDAQVVDYRVVKM 102
>gnl|CDD|216413 pfam01287, eIF-5a, Eukaryotic elongation factor 5A hypusine,
DNA-binding OB fold. eIF5A, previously thought to be
an initiation factor, has been shown to be required for
peptide chain elongation in yeast.
Length = 69
Score = 25.9 bits (58), Expect = 5.8
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 13/60 (21%)
Query: 28 VKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFEN 87
VK+ +++I ++ D ++ L D DG+T KE L+LP+ E ++ +E KFE
Sbjct: 2 VKRTEYQLIDISG--DGFL--SLMDEDGET-----KEDLKLPDGELGEEIKE----KFEE 48
>gnl|CDD|201301 pfam00554, RHD, Rel homology domain (RHD). Proteins containing the
Rel homology domain (RHD) are eukaryotic transcription
factors. The RHD is composed of two structural domains.
This is the N-terminal domain that is similar to that
found in P53. The C-terminal domain has an
immunoglobulin-like fold (See pfam01833) that binds to
DNA.
Length = 169
Score = 27.7 bits (62), Expect = 6.4
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 145 MAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSS--GFTLEEPQVHA 202
+ + L I+P + E LRQ D D N +V L F+ L + FT P V +
Sbjct: 110 LKERIELNIDPFNVGFEALRQIKDMDLN------VVRLCFQAFLPDTRGNFTTPLPPVVS 163
Query: 203 ARIH 206
I+
Sbjct: 164 NPIY 167
>gnl|CDD|217126 pfam02589, DUF162, Uncharacterized ACR, YkgG family COG1556.
Length = 185
Score = 27.6 bits (62), Expect = 6.9
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 24 FVERVKKRGFEVIYMTEPID--EYVVQQLKDYDGKTLVSVT---------------KEGL 66
F E ++ G EV + E +++ L + T +E L
Sbjct: 4 FKENLEANGAEVHRAKTAEEANEIILELLPEGGVVIEGGETDLGELGLAPALHSGREEVL 63
Query: 67 ELPEDEEEKKKREEDKVKFEN 87
+L E + ++ REE + KF +
Sbjct: 64 DLFEPKLTREAREELREKFLD 84
>gnl|CDD|234130 TIGR03161, ribazole_CobZ, alpha-ribazole phosphatase CobZ.
Sequences in the seed alignment were the experimentally
characterized CobZ of the methanogenic archaeon
Methanosarcina mazei, and other archaeal proteins found
similarly next to or very near to other cobalamin
biosynthesis genes. CobZ replaces the
alpha-ribazole-phosphate phosphatase (EC 3.1.3.73)
called CobC in analogous bacterial pathways for
cobalamin biosynthesis under anaerobic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 140
Score = 27.0 bits (60), Expect = 7.5
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 214 GIEDEDEVATGDDVKAGDIPVAEGEAEDASRMEEAVKDL-VNLLFETSLL 262
GI E V T ++ G P E E +E ++D V L +LL
Sbjct: 9 GISLEGLVETAMELYVGKEPREEAEERLLRELERYLEDPNVAALLIAALL 58
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 28.0 bits (63), Expect = 7.7
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 221 VATGDDVKAGDIPVAEGEAEDASRME-EAV 249
GD VK+GD+ +AE E + A+ ME EAV
Sbjct: 24 KKEGDKVKSGDV-IAEIETDKAT-MEVEAV 51
>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase. This model
represents the NAD-dependent L-lactate dehydrogenases
from bacteria and eukaryotes. This enzyme function as as
the final step in anaerobic glycolysis. Although lactate
dehydrogenases have in some cases been mistaken for
malate dehydrogenases due to the similarity of these two
substrates and the apparent ease with which evolution
can toggle these activities, critical residues have been
identified which can discriminate between the two
activities. At the time of the creation of this model no
hits above the trusted cutoff contained critical
residues typical of malate dehydrogenases [Energy
metabolism, Anaerobic, Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 299
Score = 27.5 bits (62), Expect = 8.4
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 15/61 (24%)
Query: 4 NQKQIYYITGETKDQVAN------SSFVERVKKRGFEVIYM--TEPID--EYVVQQLKDY 53
QK GET+ ++ S V V K GF+ I++ T P+D YV +L +
Sbjct: 75 PQKP-----GETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGF 129
Query: 54 D 54
Sbjct: 130 P 130
>gnl|CDD|107385 cd06390, PBP1_iGluR_AMPA_GluR1, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the GluR1 subunit of the AMPA receptor.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the GluR1 subunit of the AMPA
(alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid) receptor. The AMPA receptor is a member of the
glutamate-receptor ion channels (iGluRs) which are the
major mediators of excitatory synaptic transmission in
the central nervous system. AMPA receptors are composed
of four types of subunits (GluR1, GluR2, GluR3, and
GluR4) which combine to form a tetramer and play an
important role in mediating the rapid excitatory
synaptic current. Furthermore, this N-terminal domain of
the iGluRs has homology with LIVBP, a bacterial
periplasmic binding protein, as well as with the
structurally related glutamate-binding domain of the
G-protein-coupled metabotropic receptors (mGluRs).
Length = 364
Score = 27.6 bits (61), Expect = 9.2
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 32 GFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKE 64
GF+++ T+ ++QQ K++D + L V +
Sbjct: 227 GFQLVNYTDTTVSRIMQQWKNFDARDLPRVDWK 259
>gnl|CDD|237761 PRK14597, PRK14597, peptide deformylase; Provisional.
Length = 166
Score = 27.0 bits (60), Expect = 9.2
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 163 LRQKADADKN-DKAVKDLVNLLFETSLLSSGFTLEEPQV 200
LR+KA D +K + + ET G L PQV
Sbjct: 11 LRKKAKPVTKFDDNLKKTIEEMIETMYHYDGVGLAAPQV 49
>gnl|CDD|235439 PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase;
Provisional.
Length = 327
Score = 27.4 bits (62), Expect = 9.2
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 213 LGIEDEDEVATGDDVKAGDI 232
+G+ ++D++ G VK GD+
Sbjct: 155 VGVVEKDKIIDGSKVKEGDV 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.357
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,634,287
Number of extensions: 1548420
Number of successful extensions: 1639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1631
Number of HSP's successfully gapped: 66
Length of query: 304
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 208
Effective length of database: 6,679,618
Effective search space: 1389360544
Effective search space used: 1389360544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.5 bits)