RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15683
(304 letters)
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 365 bits (939), Expect = e-126
Identities = 192/247 (77%), Positives = 215/247 (87%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKENQK IYYITGETKDQVANS+FVER++K G EVIYM EPIDEY VQQLK+++GKTLVS
Sbjct: 194 MKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVS 253
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
VTKEGLELPEDEEEKKK+EE K KFENLCK+MKDIL+KKVEKV+VSNRLV SPCCIVTS
Sbjct: 254 VTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTST 313
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLV 180
YGWTANMERIMKAQALRD STMGYMAAKKHLEINPDHSI+ETLRQKA+ADKNDK+VKDLV
Sbjct: 314 YGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLV 373
Query: 181 NLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGEAE 240
LL+ET+LLSSGF+LE+PQ HA RI+RMIKLGLGI+++D A + +
Sbjct: 374 ILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDD 433
Query: 241 DASRMEE 247
D SRMEE
Sbjct: 434 DTSRMEE 440
Score = 62.0 bits (151), Expect = 5e-11
Identities = 33/57 (57%), Positives = 47/57 (82%)
Query: 238 EAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDEDEV 294
+ +A + +++VKDLV LL+ET+LLSSGF+LE+PQ A RI+RMIKLGLGI+++D
Sbjct: 358 QKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPT 414
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 360 bits (925), Expect = e-123
Identities = 131/236 (55%), Positives = 179/236 (75%), Gaps = 2/236 (0%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MK QK IYYITG++K ++ S F+E+ ++RG EV++MTEPIDEYV+QQ+KD++ K
Sbjct: 210 MKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFAC 269
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
+TKEG+ E EEEK++REE+K E LCK MK++L KVEKVIVS RL SPC +VTS+
Sbjct: 270 LTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSE 329
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLV 180
+GW+A+ME+IM+ QALRD+S YM +KK +E+NP H I++ LR++ AD+NDKAVKDLV
Sbjct: 330 FGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLV 389
Query: 181 NLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAE 236
LLF+TSLL+SGF LE+P +A RI+RMIKLGL +++E+E A + + AE
Sbjct: 390 FLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEA--AEAPVAETAPAE 443
Score = 66.6 bits (163), Expect = 2e-12
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 238 EAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDEDEV 294
A ++AVKDLV LLF+TSLL+SGF LE+P A RI+RMIKLGL +++E+E
Sbjct: 374 RRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEE 430
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 335 bits (861), Expect = e-114
Identities = 113/214 (52%), Positives = 160/214 (74%), Gaps = 2/214 (0%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
M E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++GKTLV
Sbjct: 192 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 251
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
+TK+ EL E +EEK +RE++ ++E L K +K+IL +VEKV+VS +L+D+P I T Q
Sbjct: 252 ITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQ 310
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAD-ADKNDKAVKDL 179
+GW+ANMERIMKAQALRD+S YM++KK EI+P I++ L+++ D DK VKDL
Sbjct: 311 FGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDL 370
Query: 180 VNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGL 213
LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 371 TKLLYETALLTSGFSLDEPTSFASRINRLISLGL 404
Score = 58.8 bits (143), Expect = 4e-10
Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 238 EAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGL 286
++ ++ VKDL LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 356 RVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGL 404
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 318 bits (818), Expect = e-105
Identities = 103/224 (45%), Positives = 151/224 (67%), Gaps = 4/224 (1%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q +IY++ G ++ + +S FVER+ K+G+EVIY+TEP+DEY +Q L ++DGK +
Sbjct: 443 MKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQN 502
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKD-ILDKKVEKVIVSNRLVDSPCCIVTS 119
V KEG++ E E+ K+ RE + +FE L MKD L K+EK +VS RL +SPC +V S
Sbjct: 503 VAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVAS 562
Query: 120 QYGWTANMERIMKAQAL---RDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAV 176
QYGW+ NMERIMKAQA +D ST Y + KK EINP H +++ + ++ D++DK V
Sbjct: 563 QYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTV 622
Query: 177 KDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDE 220
DL +LFET+ L SG+ L + + + RI RM++L L I+ + +
Sbjct: 623 SDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAK 666
Score = 61.9 bits (151), Expect = 7e-11
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 238 EAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDEDE 293
++ V DL +LFET+ L SG+ L + + RI RM++L L I+ + +
Sbjct: 611 RRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAK 666
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 309 bits (794), Expect = e-101
Identities = 113/214 (52%), Positives = 160/214 (74%), Gaps = 2/214 (0%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
M E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++GKTLV
Sbjct: 464 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 523
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQ 120
+TK+ EL E +EEK +RE++ ++E L K +K+IL +VEKV+VS +L+D+P I T Q
Sbjct: 524 ITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQ 582
Query: 121 YGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAD-ADKNDKAVKDL 179
+GW+ANMERIMKAQALRD+S YM++KK EI+P I++ L+++ D DK VKDL
Sbjct: 583 FGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDL 642
Query: 180 VNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGL 213
LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 643 TKLLYETALLTSGFSLDEPTSFASRINRLISLGL 676
Score = 55.2 bits (133), Expect = 9e-09
Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 238 EAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGL 286
++ ++ VKDL LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 628 RVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGL 676
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 258 bits (662), Expect = 4e-82
Identities = 57/210 (27%), Positives = 113/210 (53%), Gaps = 11/210 (5%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q++IYYIT ++ +S +E ++K+G EV+ +++ IDE+++ L ++DGK S
Sbjct: 423 MKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQS 482
Query: 61 VTKEGLELPE-DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTS 119
V+K L + +E + +E + +K +L ++V+ V +++RL D+P + T
Sbjct: 483 VSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTD 542
Query: 120 QYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDL 179
+ M ++ A + K E+NPDH +V ++A +++ +
Sbjct: 543 ADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLV----KRAADTEDEAKFSEW 592
Query: 180 VNLLFETSLLSSGFTLEEPQVHAARIHRMI 209
V LL + +LL+ TLE+P + R+++++
Sbjct: 593 VELLLDQALLAERGTLEDPNLFIRRMNQLL 622
Score = 43.4 bits (103), Expect = 7e-05
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 246 EEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMI 282
E + V LL + +LL+ TLE+P + R+++++
Sbjct: 586 EAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 622
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 192 bits (490), Expect = 3e-57
Identities = 39/135 (28%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q++IYYIT ++ +S +E ++K+G EV+ +++ IDE+++ L ++DGK S
Sbjct: 423 MKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQS 482
Query: 61 VTKEGLELPE-DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTS 119
V+K L + +E + +E + +K +L ++V+ V +++RL D+P + T
Sbjct: 483 VSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTD 542
Query: 120 QYGWTANMERIMKAQ 134
+ M ++ A
Sbjct: 543 ADEMSTQMAKLFAAA 557
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 169 bits (430), Expect = 3e-53
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 77 KREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQAL 136
+ + +K +L ++V+ V +++RL D+P + T + M ++ A
Sbjct: 2 RGSHHHHHHGSFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ 61
Query: 137 RDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLE 196
+ K E+NPDH +V ++A +++ + V LL + +LL+ TLE
Sbjct: 62 KV------PEVKYIFELNPDHVLV----KRAADTEDEAKFSEWVELLLDQALLAERGTLE 111
Query: 197 EPQVHAARIHRMI 209
+P + R+++++
Sbjct: 112 DPNLFIRRMNQLL 124
Score = 49.5 bits (119), Expect = 6e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 246 EEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMI 282
E + V LL + +LL+ TLE+P + R+++++
Sbjct: 88 EAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 124
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 159 bits (405), Expect = 2e-47
Identities = 48/96 (50%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
M E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++GKTLV
Sbjct: 192 MPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 251
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDIL 96
+TK+ EL E +EEK +RE++ ++E L K +K+IL
Sbjct: 252 ITKD-FELEETDEEKAEREKEIKEYEPLTKALKEIL 286
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 153 bits (389), Expect = 7e-45
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE Q++IYYIT ++ +S +E ++K+G EV+ +++ IDE+++ L ++DGK S
Sbjct: 195 MKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQS 254
Query: 61 VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRL 109
V+K L + + + + +DK + +
Sbjct: 255 VSKVDESLEKLADGDLGTLVPRGS-MAISDPNSSSVDKLAAALEHHHHH 302
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 134 bits (340), Expect = 5e-38
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
MKE QK IYYITGE+K+QVANS+FVERV+KRGFEV+YMTEPIDEY VQQLK++DGK+LVS
Sbjct: 194 MKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVS 253
Query: 61 VTKEGLELPED 71
VTKEGLEL E+
Sbjct: 254 VTKEGLELAEN 264
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 123 bits (311), Expect = 8e-34
Identities = 36/68 (52%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
M E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++GKTLV
Sbjct: 194 MPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 253
Query: 61 VTKEGLEL 68
+TK+ EL
Sbjct: 254 ITKD-FEL 260
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 116 bits (294), Expect = 2e-31
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQL--KDYDGKTL 58
MKE+QK IYYI+GE K NS +E++K ++V++ EPIDE+ + L Y G +
Sbjct: 197 MKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPIDEFCLSSLTVNKYKGYEV 256
Query: 59 VSVTKE 64
+ V K
Sbjct: 257 LDVNKA 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 40/298 (13%), Positives = 86/298 (28%), Gaps = 97/298 (32%)
Query: 48 QQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKV---EKVI 104
K + L ++ + L + E E +K F+ L + ++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRK-------MFDRLS-----VFPPSAHIPTILL 392
Query: 105 VSNRLVDSPCCIVTSQYGWTA----NMERIM-----KAQALRD--TSTMG----YMAAKK 149
++ W ++ ++ + + ST+ Y+ K
Sbjct: 393 ----------SLI-----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 150 HLEINPD-H-SIVETLRQKADADKNDKAVKDLVN-------------------LLFETSL 188
LE H SIV+ D +D L LF
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 189 LSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAEGE-AEDASRMEE 247
L F LE +I + + + + + ++ + E
Sbjct: 498 LDFRF-LE------QKI---RHDSTAWNASGSIL--NTL--QQLKFYKPYICDNDPKYER 543
Query: 248 AVKDLVNLLF--ETSLLSSGFTLEEPQVLAARIHRMIKLGLGIEDEDEVLVMMSRREI 303
V +++ L E +L+ S +T ++++ L EDE + + +++
Sbjct: 544 LVNAILDFLPKIEENLICSKYT------------DLLRIAL--MAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.008
Identities = 46/296 (15%), Positives = 78/296 (26%), Gaps = 93/296 (31%)
Query: 41 PIDEYVV-QQLKDYDGKTLVSVTKEG---------LEL---------PEDEEEKKKREED 81
P + + QL++ K L T+ EL E K + +
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 82 KVK-----FEN--LCKVMKDI------LDKKVEKVIVSNRLVDSPCCIVTSQYGWTANME 128
+ FEN L DI L ++ + +V + ++ + +
Sbjct: 83 VLNLCLTEFENCYLEG--NDIHALAAKLLQENDTTLVKTKE------LIKNYITARIMAK 134
Query: 129 R----------IMKAQA---------------------LRDTSTMGYMAAKKHLEINPDH 157
R LRD Y L I
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-YHVLVGDL-IKFSA 192
Query: 158 SIVETL-RQKADADKNDKAVKDLVNLLFETS-------LLSSGFTLEEP-----Q-VHAA 203
+ L R DA+K +++ L S LLS + P Q H
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--PLIGVIQLAHYV 250
Query: 204 RIHRMIKLGLGIEDEDEVATGDDVKAGDIPVAE--GEAEDASRMEEAVKDLVNLLF 257
+ LG + G + + A E + +V+ + +LF
Sbjct: 251 VTAK--LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.033
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 63 KEGLELPE-DEEEKKKREEDKVKFENLCKVMKDILD------KKVEKVIVSNRLVD 111
++ L E D K +E + K + KD+ + ++VEK ++NR+ D
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAK------KDLEEWNQRQSEQVEKNKINNRIAD 142
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MSE; 1.83A {Planctomyces limnophilus}
Length = 259
Score = 30.3 bits (67), Expect = 0.72
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 11 ITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYD 54
G+T + A + +E Y+ + V + L D
Sbjct: 9 YCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQD 52
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous
motif, winged-helix, biosynthetic protein; 2.10A {Homo
sapiens} SCOP: a.4.5.53 a.118.1.18
Length = 226
Score = 28.5 bits (63), Expect = 2.5
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 22 SSFVERVKKRGFEVIYMT-EPIDEYVVQQ-LKDYDGKTLV--------SVTKEGLELP-- 69
+ F + V+K V+ +T + ID +++ + L D L S + G
Sbjct: 132 TGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICS 191
Query: 70 EDEEEKKKREEDKVKFENLCKVMK 93
++E K K +K+ F+++ +M
Sbjct: 192 QEESIKPKNIVEKIDFDSVSSIMA 215
>3pnn_A Conserved domain protein; structural genomics, PSI-biology,
protein structure initiati midwest center for
structural genomics, MCSG; HET: MSE GOL; 1.90A
{Porphyromonas gingivalis}
Length = 303
Score = 28.6 bits (63), Expect = 3.0
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 29 KKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENL 88
K+ + + I +Y V LV V + E E E+ + E ++ E +
Sbjct: 22 LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFE-KEFREKILTKYEGRIPVELV 80
Query: 89 CKVMKDILD 97
+ + + +
Sbjct: 81 FQELDRLPE 89
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics,
PSI, protein structure INI southeast collaboratory for
structural genomics; 1.51A {Pyrococcus furiosus} SCOP:
d.15.3.1
Length = 98
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 176 VKDLVNLLFE-----TSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVA 222
V+DL+ + + + E+ V+ A R + ++D D V
Sbjct: 39 VRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVG 90
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S
metabolism, 2-hydroxyacid dehydrogenases; HET: NAD;
1.70A {Homo sapiens}
Length = 335
Score = 28.3 bits (64), Expect = 3.2
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 25 VERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTK 63
+ ++ G +V+ E ++ +L+D +G + S TK
Sbjct: 40 RKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATK 78
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 28.3 bits (64), Expect = 3.5
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 25 VERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTK 63
++ ++++G +V YM E E ++ + +YD + S TK
Sbjct: 19 IKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTK 57
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 27.8 bits (61), Expect = 4.0
Identities = 12/104 (11%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 1 MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
+ + + I + + + + + + + M+ P+ EY++ + +V
Sbjct: 178 LTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYII----KKN--DIVR 231
Query: 61 VTKE-GLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKV 103
V E G L ++ + E K + + ++
Sbjct: 232 VFNEYGFVLVDNVDFATIIERSKKFINGASTMEDRPSTRNFFEL 275
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 27.9 bits (63), Expect = 4.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 25 VERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTK 63
++ +K G EVIY P ++ +V+ +KD + + S K
Sbjct: 17 IQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPK 55
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 28.0 bits (63), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 23 SFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDG 55
F + K G + Y TE +DE V+ K +DG
Sbjct: 15 YFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDG 47
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 27.8 bits (62), Expect = 4.6
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 42 ID-EYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKK 99
+ ++ + + G ++ D K +F L + +KD L
Sbjct: 129 LAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRAD 187
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae
O1 biovar eltor, structure genomics, protein structure
initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Length = 336
Score = 26.9 bits (60), Expect = 8.5
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 229 AGDIPVAEGEAEDA-SRMEEAVKDLV 253
G+I E E A + ++ +
Sbjct: 90 LGNIRCEGDELEQAQQECAQVIQQAL 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.357
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,688,408
Number of extensions: 297296
Number of successful extensions: 783
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 56
Length of query: 304
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,105,140
Effective search space: 866184540
Effective search space used: 866184540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.3 bits)