RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15683
         (304 letters)



>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
           [TaxId: 562]}
          Length = 115

 Score =  115 bits (290), Expect = 4e-33
 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 87  NLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMA 146
           +    +K +L ++V+ V +++RL D+P  + T     +  M ++  A             
Sbjct: 1   SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG------QKVPE 54

Query: 147 AKKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIH 206
            K   E+NPDH +V    ++A   +++    + V LL + +LL+   TLE+P +   R++
Sbjct: 55  VKYIFELNPDHVLV----KRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMN 110

Query: 207 RMI 209
           +++
Sbjct: 111 QLL 113



 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 246 EEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMI 282
           E    + V LL + +LL+   TLE+P +   R+++++
Sbjct: 77  EAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 113


>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 256

 Score = 94.6 bits (235), Expect = 2e-23
 Identities = 34/64 (53%), Positives = 49/64 (76%)

Query: 1   MKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVS 60
           M E+QK IYYITGE+   V  S F++ +K + FEV+++T+PIDEY   QLK+++GKTLV 
Sbjct: 193 MPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVD 252

Query: 61  VTKE 64
           +TK+
Sbjct: 253 ITKD 256


>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
          dehydrogenase {Lactobacillus casei [TaxId: 1582]}
          Length = 131

 Score = 28.1 bits (62), Expect = 0.70
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 23 SFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDG 55
           F +  K  G  + Y TE +DE  V+  K +DG
Sbjct: 15 YFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDG 47


>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 282

 Score = 27.2 bits (60), Expect = 2.9
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 235 AEGEAEDASRMEEAVKDLVNLLFETSLLSSGFTLEEPQVLAARIHRMIKLGLGIED 290
              EA+  +  E+ +   V+   +    +          LA RIHR +   LG+ED
Sbjct: 9   VYYEAKLVTDDEDLISQCVDESLKILAENYSSRPI-NAHLATRIHRRVYEILGVED 63



 Score = 25.6 bits (56), Expect = 8.6
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 12/136 (8%)

Query: 172 NDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGD 231
           ++  +   V+   +    +         + A RIHR +   LG+ED        +VKA  
Sbjct: 19  DEDLISQCVDESLKILAENYSSRPINAHL-ATRIHRRVYEILGVED-----PYAEVKARA 72

Query: 232 IPVAEGEAEDASRMEEAVKDLVNLLFETSL------LSSGFTLEEPQVLAARIHRMIKLG 285
             VA      A  + E   D        S+                +     + R ++ G
Sbjct: 73  NEVARQVLPLAKEIVEGSDDPFKTAVIVSIVGNNFDYGVQGHKVVEEEFRDFLKRKVQEG 132

Query: 286 LGIEDEDEVLVMMSRR 301
           L I D + +  + S +
Sbjct: 133 LKINDTERIKELSSGK 148


>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation
          factor 3 subunit 12, eIF3k, C-terminal domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 25.4 bits (56), Expect = 2.9
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 68 LPEDEEEKKKREEDKVKFENLCKVMK 93
            ++E  K K   +K+ F+++  +M 
Sbjct: 59 CSQEESIKPKNIVEKIDFDSVSSIMA 84


>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 124

 Score = 25.7 bits (56), Expect = 3.6
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 20/103 (19%)

Query: 21  NSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLEL--PEDEEEKKKR 78
           NS  V R K  G   +  T     Y ++  K Y G   +    +   +  P         
Sbjct: 14  NSDLVIRAKFVGTPEVNQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAM------- 66

Query: 79  EEDKVKFENLCKVMKDILDKKVEKVI----VSNRLVDSPCCIV 117
                  E++C       ++  E +I        L  + C  V
Sbjct: 67  -------ESVCGYFHRSHNRSEEFLIAGKLQDGLLHITTCSFV 102


>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 260

 Score = 25.7 bits (55), Expect = 7.1
 Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 8/53 (15%)

Query: 11 ITGETKDQVANSSFVERVKKRGFEVIYM----TEPID----EYVVQQLKDYDG 55
          +    +D      ++  +   G E   +     E +        +   +DY G
Sbjct: 6  LKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGG 58


>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA
           {Escherichia coli [TaxId: 562]}
          Length = 209

 Score = 25.3 bits (55), Expect = 9.0
 Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 23  SFVERVKKRGFEVIYMT---EPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKRE 79
             ++   +RG  + ++T       E V + L D     + +     +    D+  +  + 
Sbjct: 93  QLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFH--IPATNMNPVIFAGDKPGQNTKS 150

Query: 80  EDKVKFE 86
           +      
Sbjct: 151 QWLQDKN 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,097,979
Number of extensions: 51955
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 20
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)