BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15684
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D2N|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And 2
Domain
Length = 83
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCREFQR CSRPDTECKFAHP + +V+NGRV AC+DS+
Sbjct: 2 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 50
>pdb|2RPP|A Chain A, Solution Structure Of Tandem Zinc Finger Domain 12 In
Muscleblind-Like Protein 2
Length = 89
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCR+FQR CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 10 RDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 58
>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of
Muscleblind- Like 2, Isoform 1 [homo Sapiens]
Length = 98
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 11 RWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
R +LEVCREFQR C+R +T+C+FAHP + ++ + VT C D +
Sbjct: 16 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYI 63
>pdb|3D2Q|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2S|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
Length = 70
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 10 SRWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
SR +LEVCRE+QR C+R + +C+FAHP + ++ + VT C D +
Sbjct: 1 SRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYI 49
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana
pdb|1E5X|B Chain B, Structure Of Threonine Synthase From Arabidopsis Thaliana
Length = 486
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 29 PDTECKFAHPPANVEVQNGRV 49
PD C+F++PP +V+ G V
Sbjct: 451 PDXACRFSNPPVDVKADFGAV 471
>pdb|2C2B|A Chain A, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|B Chain B, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|C Chain C, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|D Chain D, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|E Chain E, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|F Chain F, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2G|A Chain A, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
pdb|2C2G|B Chain B, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
Length = 486
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 29 PDTECKFAHPPANVEVQNGRV 49
PD C+F++PP +V+ G V
Sbjct: 451 PDMACRFSNPPVDVKADFGAV 471
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,403,419
Number of Sequences: 62578
Number of extensions: 73761
Number of successful extensions: 117
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 10
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)