BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15684
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O16011|MBL_DROME Protein muscleblind OS=Drosophila melanogaster GN=mbl PE=2 SV=2
Length = 297
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/56 (94%), Positives = 55/56 (98%)
Query: 1 MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
MNSLLNGKDSRWLQLEVCREFQRNKCSR DTECKFAHPPANVEVQNG+VTACYDS+
Sbjct: 7 MNSLLNGKDSRWLQLEVCREFQRNKCSRQDTECKFAHPPANVEVQNGKVTACYDSI 62
>sp|A8XND8|MBL_CAEBR Muscleblind-like protein OS=Caenorhabditis briggsae GN=mbl-1 PE=3
SV=2
Length = 299
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 47/56 (83%)
Query: 1 MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
M+ + N KDSRWLQ+EVCREF R +C+R D ECKFAHPP NV+VQ GRVTACYDS+
Sbjct: 27 MSQVFNVKDSRWLQVEVCREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSI 82
>sp|Q94250|MBL_CAEEL Muscleblind-like protein OS=Caenorhabditis elegans GN=mbl-1 PE=1
SV=2
Length = 324
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 1 MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
++ + N KDSRWLQ+EVCREF R +C+R D ECKFAHPP NV+VQ GRVTACYDS+
Sbjct: 27 VSQVFNVKDSRWLQVEVCREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSI 82
>sp|Q9NR56|MBNL1_HUMAN Muscleblind-like protein 1 OS=Homo sapiens GN=MBNL1 PE=1 SV=2
Length = 388
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCREFQR CSRPDTECKFAHP + +V+NGRV AC+DS+
Sbjct: 9 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 11 RWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
R +LEVCRE+QR C+R + +C+FAHP + ++ + VT C D +
Sbjct: 178 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYI 225
>sp|Q5ZKW9|MBNL1_CHICK Muscleblind-like protein 1 OS=Gallus gallus GN=MBNL1 PE=2 SV=1
Length = 369
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCREFQR CSRPDTECKFAHP + +V+NGRV AC+DS+
Sbjct: 9 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 11 RWLQLEVCREFQRNKCSRPDTECKFAHPP--ANVEVQNGRVTACYDSV 56
R +LEVCRE+QR C+R + +C+FAHP A ++ + VT C D +
Sbjct: 177 RTDRLEVCREYQRGNCNRGENDCRFAHPADSAMIDTNDNTVTVCMDYI 224
>sp|Q9JKP5|MBNL1_MOUSE Muscleblind-like protein 1 OS=Mus musculus GN=Mbnl1 PE=1 SV=1
Length = 341
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCREFQR CSRPDTECKFAHP + +V+NGRV AC+DS+
Sbjct: 9 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 57
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 11 RWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
R +LEVCRE+QR C+R + +C+FAHP + ++ + VT C D +
Sbjct: 177 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYI 224
>sp|Q6Q2B2|MBN2A_TAKRU Muscleblind-like protein 2a OS=Takifugu rubripes GN=mbnl2a PE=2
SV=1
Length = 351
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCR+FQR CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 9 RDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 57
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 6 NGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
N K R +LEVCREFQR C+R +T+C+FAHP + ++ + VT C D +
Sbjct: 171 NQKLLRTDKLEVCREFQRGNCARGETDCRFAHPSDSPMIDTSDNTVTVCMDYI 223
>sp|Q56V19|MBNL3_TAKRU Muscleblind-like protein 3 OS=Takifugu rubripes GN=mbnl3 PE=2
SV=1
Length = 323
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%)
Query: 7 GKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
G+D++WL LEVCREFQR CSR D ECKFAHP + V+NGRV AC+DS+
Sbjct: 8 GRDTKWLTLEVCREFQRGTCSRSDAECKFAHPSRSCHVENGRVIACFDSL 57
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 2 NSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHP--PANVEVQNGRVTACYDSV 56
N + K R +LEVCREFQR C+R +++C++AHP V+ V C D +
Sbjct: 167 NGTSSPKHMRTDKLEVCREFQRGNCTRGESDCRYAHPLEAGMVDSSENSVIVCMDYI 223
>sp|Q5R4F5|MBNL2_PONAB Muscleblind-like protein 2 OS=Pongo abelii GN=MBNL2 PE=2 SV=2
Length = 373
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCR+FQR CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 9 RDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 57
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 11 RWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
R +LEVCREFQR C+R +T+C+FAHP + ++ + VT C D +
Sbjct: 175 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYI 222
>sp|Q5VZF2|MBNL2_HUMAN Muscleblind-like protein 2 OS=Homo sapiens GN=MBNL2 PE=1 SV=2
Length = 373
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCR+FQR CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 9 RDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 57
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 11 RWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
R +LEVCREFQR C+R +T+C+FAHP + ++ + VT C D +
Sbjct: 175 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYI 222
>sp|F2Z3T4|MBNL2_RAT Muscleblind-like protein 2 OS=Rattus norvegicus GN=Mbnl2 PE=1
SV=1
Length = 373
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 41/49 (83%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCR++QR CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 9 RDTKWLTLEVCRQYQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 57
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 11 RWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
R +LEVCREFQR C+R +T+C+FAHP + ++ + VT C D +
Sbjct: 175 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTNDNTVTVCMDYI 222
>sp|Q8C181|MBNL2_MOUSE Muscleblind-like protein 2 OS=Mus musculus GN=Mbnl2 PE=2 SV=2
Length = 373
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 41/49 (83%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCR++QR CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 9 RDTKWLTLEVCRQYQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 57
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 11 RWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
R +LEVCREFQR C+R +T+C+FAHP + ++ + VT C D +
Sbjct: 175 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTNDNTVTVCMDYI 222
>sp|Q9NUK0|MBNL3_HUMAN Muscleblind-like protein 3 OS=Homo sapiens GN=MBNL3 PE=2 SV=2
Length = 354
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCREFQR CSR D +CKFAHPP V+NGRV AC+DS+
Sbjct: 10 RDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSL 58
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHP--PANVEVQNGRVTACYDSV 56
M + K R +LEVCREFQR C+R + +C++AHP + +E + VT C D +
Sbjct: 163 MPGAVGPKLMRSDKLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYI 220
>sp|Q8R003|MBNL3_MOUSE Muscleblind-like protein 3 OS=Mus musculus GN=Mbnl3 PE=2 SV=1
Length = 342
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCREFQR CSR D EC+FAHPP V+NGRV AC+DS+
Sbjct: 10 RDTKWLTLEVCREFQRGTCSRADAECRFAHPPRVCHVENGRVVACFDSL 58
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPP--ANVEVQNGRVTACYDSV 56
K R +LEVCREFQR C+R ++EC++AHP + +EV + VT C D +
Sbjct: 170 KPIRTDRLEVCREFQRGNCTRGESECRYAHPTDVSMIEVTDNSVTICMDYI 220
>sp|Q0JD07|C3H28_ORYSJ Zinc finger CCCH domain-containing protein 28 OS=Oryza sativa
subsp. japonica GN=Os04g0438700 PE=2 SV=1
Length = 346
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Query: 6 NGKDSRW--LQLEVCREFQRNKCSRPDTECKFAHPPANVEV-QNGRVTACYDSV 56
+GK R L +EVCR+F R++C+R D ECK+AHP V V ++ +VTAC DS+
Sbjct: 95 DGKRRRHNDLNVEVCRDFLRDRCARADIECKYAHPHPTVAVDRDSKVTACADSL 148
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 15 LEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYD 54
+EVCR++ +N C+R C+FAHP N EV N +V C D
Sbjct: 285 VEVCRDYLKNMCNR--ESCRFAHPDLNNEVMNTQVEVCRD 322
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%), Gaps = 2/28 (7%)
Query: 14 QLEVCREFQRNKCSRPDTECKFAHPPAN 41
Q+EVCR+F+R +C+RP C+F HPPA+
Sbjct: 316 QVEVCRDFKRGECNRP--ACRFYHPPAS 341
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 7 GKDSRWLQLEVCREFQRNKCSRPDTECKFAH 37
G + ++++VCR+F R +CSR EC+F H
Sbjct: 176 GVEDPKVKMQVCRDFTRGRCSRSANECRFLH 206
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 17 VCREFQRNKCSRPDTECKFAH 37
VCR FQR +C+R D+ CKF+H
Sbjct: 135 VCRAFQRGECTRGDS-CKFSH 154
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 17 VCREFQRNKCSRPDTECKFAH 37
VCR FQR +C+R D+ CKF+H
Sbjct: 185 VCRAFQRGECTRGDS-CKFSH 204
>sp|Q5QYP3|SYC_IDILO Cysteine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735
/ DSM 15497 / L2-TR) GN=cysS PE=3 SV=1
Length = 459
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 1 MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAH 37
M+ LN ++ + E+ RE RN+ S PDT + AH
Sbjct: 348 MDDDLNAPEAMSVLFEIAREINRNRESAPDTAAQLAH 384
>sp|Q9FWS3|C3H16_ARATH Zinc finger CCCH domain-containing protein 16 OS=Arabidopsis
thaliana GN=At1g75340 PE=2 SV=2
Length = 435
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 13 LQLEVCREFQRNKCSRPDTECKFAHP 38
++ E+CR FQR C R C+F HP
Sbjct: 1 MRKELCRNFQRGSC-RYGENCRFLHP 25
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,462,776
Number of Sequences: 539616
Number of extensions: 956560
Number of successful extensions: 1539
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 65
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)