Query psy15684
Match_columns 78
No_of_seqs 96 out of 98
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 18:52:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2494|consensus 100.0 1.3E-32 2.7E-37 214.2 5.6 68 4-71 26-93 (331)
2 KOG2494|consensus 98.6 3.6E-09 7.8E-14 83.3 -1.2 67 5-72 186-254 (331)
3 PF00642 zf-CCCH: Zinc finger 97.9 2.9E-06 6.3E-11 44.4 0.1 24 15-39 3-27 (27)
4 smart00356 ZnF_C3H1 zinc finge 97.8 5.9E-06 1.3E-10 41.6 0.1 24 15-39 4-27 (27)
5 KOG1492|consensus 97.0 0.00026 5.6E-09 55.7 1.3 53 15-73 233-285 (377)
6 KOG1677|consensus 96.3 0.0016 3.6E-08 48.6 1.0 65 7-72 124-202 (332)
7 smart00356 ZnF_C3H1 zinc finge 96.0 0.0025 5.4E-08 31.8 0.6 22 49-70 4-26 (27)
8 KOG1492|consensus 93.8 0.026 5.6E-07 44.6 1.0 45 18-70 209-255 (377)
9 KOG1040|consensus 93.6 0.029 6.4E-07 44.2 1.0 55 12-71 74-129 (325)
10 PF14608 zf-CCCH_2: Zinc finge 93.5 0.02 4.3E-07 28.0 -0.1 12 26-38 8-19 (19)
11 KOG1595|consensus 92.9 0.032 7E-07 46.8 0.3 61 8-71 227-291 (528)
12 KOG1677|consensus 91.7 0.058 1.3E-06 40.3 0.3 27 14-41 176-203 (332)
13 KOG1595|consensus 89.7 0.2 4.3E-06 42.2 1.8 54 21-74 199-262 (528)
14 KOG1763|consensus 87.3 0.39 8.4E-06 38.6 1.9 27 14-41 91-117 (343)
15 KOG4791|consensus 82.3 0.66 1.4E-05 39.7 1.2 53 15-72 32-87 (667)
16 KOG4791|consensus 77.4 0.45 9.7E-06 40.7 -1.3 53 15-72 3-55 (667)
17 KOG1039|consensus 75.8 1.3 2.8E-05 35.3 1.0 24 16-40 9-32 (344)
18 COG5252 Uncharacterized conser 73.8 2.2 4.7E-05 33.7 1.7 30 10-40 80-109 (299)
19 PF10650 zf-C3H1: Putative zin 73.5 1.3 2.7E-05 23.1 0.2 14 56-69 7-21 (23)
20 KOG1040|consensus 71.5 2.9 6.3E-05 33.1 2.0 52 15-70 45-99 (325)
21 KOG2202|consensus 69.9 1.9 4.2E-05 33.6 0.7 26 14-40 151-176 (260)
22 KOG2185|consensus 67.0 3.1 6.6E-05 34.9 1.3 26 14-40 139-164 (486)
23 COG5084 YTH1 Cleavage and poly 62.3 4.2 9E-05 31.9 1.2 53 15-71 104-158 (285)
24 KOG3702|consensus 56.4 5.9 0.00013 34.6 1.2 44 25-72 593-646 (681)
25 KOG3702|consensus 47.7 14 0.00031 32.3 2.2 37 17-70 627-664 (681)
26 COG5152 Uncharacterized conser 45.4 6.8 0.00015 30.4 -0.1 26 14-40 140-166 (259)
27 KOG1813|consensus 33.9 21 0.00044 28.7 1.0 29 11-40 181-211 (313)
28 PF08629 PDE8: PDE8 phosphodie 25.8 92 0.002 19.0 2.7 26 39-64 4-29 (52)
29 KOG0153|consensus 24.1 25 0.00054 28.9 -0.1 24 14-38 160-183 (377)
30 KOG2185|consensus 23.8 26 0.00057 29.5 0.0 20 51-70 142-162 (486)
No 1
>KOG2494|consensus
Probab=99.97 E-value=1.3e-32 Score=214.20 Aligned_cols=68 Identities=56% Similarity=0.936 Sum_probs=65.9
Q ss_pred ccCCCCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684 4 LLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPM 71 (78)
Q Consensus 4 ~~~~rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~ 71 (78)
.+++||++|+++|||||||||.|+|++.||||+||+.++.|+||+|++|+||+||||+|++|||+||.
T Consensus 26 ~~~~kd~~wl~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCsR~nCkylHpp 93 (331)
T KOG2494|consen 26 NENVKDTKWLTLEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCSRENCKYLHPP 93 (331)
T ss_pred hccccccchhHHHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccCcccceecCCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999995
No 2
>KOG2494|consensus
Probab=98.63 E-value=3.6e-09 Score=83.32 Aligned_cols=67 Identities=27% Similarity=0.421 Sum_probs=60.2
Q ss_pred cCCCCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCc--eeeCCEEEEEEeccCCCCCccccccccccc
Q psy15684 5 LNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANV--EVQNGRVTACYDSVHVPTPSASLLILLPMW 72 (78)
Q Consensus 5 ~~~rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v--~v~~~~v~vC~D~~kGrC~R~~cr~~h~~~ 72 (78)
...+-.|.+.+|+|++ ++|+|.|.+..|+|+||..++ .-+++.+++|+|+++|+|.+.+|+|+|+.+
T Consensus 186 ~~~k~~r~~~~e~~~~-~~gn~~r~e~d~~f~~~~k~~~~~s~~~t~~~~~~~t~~~~~~en~~~~~~~~ 254 (331)
T KOG2494|consen 186 GGQKLLRSDRLEVCRE-QRGNCRRGEQDAQFAHPAKSIMIDSNDNTVEVCLRYTKGRCETENCKYFHAPA 254 (331)
T ss_pred cccccccCCCCCCCcc-cccccccchhHHHHhhhhhhhhcccCCCcchhccccccceechhcccccCchH
Confidence 4456678889999999 999999999999999998764 457889999999999999999999999975
No 3
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.88 E-value=2.9e-06 Score=44.44 Aligned_cols=24 Identities=42% Similarity=0.912 Sum_probs=18.3
Q ss_pred HHHhHHHHh-CCCCCCCCCccccCCC
Q psy15684 15 LEVCREFQR-NKCSRPDTECKFAHPP 39 (78)
Q Consensus 15 leVCReF~R-g~C~R~~~~CRfaHP~ 39 (78)
-++|+.|++ |.|.+|+ .|+|+|+.
T Consensus 3 ~~~C~~f~~~g~C~~G~-~C~f~H~~ 27 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGD-KCRFAHGE 27 (27)
T ss_dssp SSB-HHHHHTS--TTGG-GSSSBSSG
T ss_pred cccChhhccCCccCCCC-CcCccCCC
Confidence 358999999 9999996 99999984
No 4
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.76 E-value=5.9e-06 Score=41.59 Aligned_cols=24 Identities=50% Similarity=1.039 Sum_probs=20.9
Q ss_pred HHHhHHHHhCCCCCCCCCccccCCC
Q psy15684 15 LEVCREFQRNKCSRPDTECKFAHPP 39 (78)
Q Consensus 15 leVCReF~Rg~C~R~~~~CRfaHP~ 39 (78)
..+|++|+.|.|.+|+ .|+|+|+.
T Consensus 4 ~~~C~~~~~g~C~~g~-~C~~~H~~ 27 (27)
T smart00356 4 TELCKFFKRGYCPYGD-RCKFAHPL 27 (27)
T ss_pred CCcCcCccCCCCCCCC-CcCCCCcC
Confidence 4589999999999997 99999974
No 5
>KOG1492|consensus
Probab=97.03 E-value=0.00026 Score=55.72 Aligned_cols=53 Identities=15% Similarity=0.412 Sum_probs=45.7
Q ss_pred HHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccccc
Q psy15684 15 LEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWR 73 (78)
Q Consensus 15 leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~~~ 73 (78)
-.||-.|+.|.|+..+ +|-.+|-.+ ..+..+|.=|+-|.|+.++|||.|-.|-
T Consensus 233 kticpkflngrcnkae-dcnlsheld-----prripacryfllgkcnnpncryvhihys 285 (377)
T KOG1492|consen 233 KTICPKFLNGRCNKAE-DCNLSHELD-----PRRIPACRYFLLGKCNNPNCRYVHIHYS 285 (377)
T ss_pred cccChHHhcCccCchh-cCCcccccC-----ccccchhhhhhhccCCCCCceEEEEeec
Confidence 5688899999999987 899988754 3588899999999999999999998774
No 6
>KOG1677|consensus
Probab=96.28 E-value=0.0016 Score=48.56 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=49.6
Q ss_pred CCCcchhhHHHhHHHHh-CCCCC-CCCCccccCCCCCce-------ee---CCEEEEEEeccC-CCCCcc-ccccccccc
Q psy15684 7 GKDSRWLQLEVCREFQR-NKCSR-PDTECKFAHPPANVE-------VQ---NGRVTACYDSVH-VPTPSA-SLLILLPMW 72 (78)
Q Consensus 7 ~rd~r~l~leVCReF~R-g~C~R-~~~~CRfaHP~~~v~-------v~---~~~v~vC~D~~k-GrC~R~-~cr~~h~~~ 72 (78)
.++....+.+.|+-|.+ |.|.. ++ .|||+|+.+... +. .-+-..|..|++ |-|--+ .|+|+|+.=
T Consensus 124 ~~~p~~~kt~lc~~~~~~g~c~y~ge-~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 124 ERKPERYKTPLCRSFRKSGTCKYRGE-QCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred ccCcccccCCcceeeecCccccccCc-hhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence 34555566788887764 78998 86 999999987644 11 226678999999 999996 999999853
No 7
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.01 E-value=0.0025 Score=31.76 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=19.5
Q ss_pred EEEEEeccCCCCCcc-ccccccc
Q psy15684 49 VTACYDSVHVPTPSA-SLLILLP 70 (78)
Q Consensus 49 v~vC~D~~kGrC~R~-~cr~~h~ 70 (78)
..+|.+|++|.|.++ +|+|.|.
T Consensus 4 ~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 4 TELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCcCcCccCCCCCCCCCcCCCCc
Confidence 457999999999997 8999996
No 8
>KOG1492|consensus
Probab=93.81 E-value=0.026 Score=44.62 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=36.0
Q ss_pred hHHHH-hCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcc-ccccccc
Q psy15684 18 CREFQ-RNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSA-SLLILLP 70 (78)
Q Consensus 18 CReF~-Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~-~cr~~h~ 70 (78)
||-|. .|.|-.|. .|||.|-|. +.|+|--|++|||+.. .|-..|-
T Consensus 209 cryynangicgkga-acrfvhept-------rkticpkflngrcnkaedcnlshe 255 (377)
T KOG1492|consen 209 CRYYNANGICGKGA-ACRFVHEPT-------RKTICPKFLNGRCNKAEDCNLSHE 255 (377)
T ss_pred EEEecCCCcccCCc-eeeeecccc-------ccccChHHhcCccCchhcCCcccc
Confidence 44443 47899996 999999887 7899999999999985 7776663
No 9
>KOG1040|consensus
Probab=93.63 E-value=0.029 Score=44.20 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=44.8
Q ss_pred hhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCc-ccccccccc
Q psy15684 12 WLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPS-ASLLILLPM 71 (78)
Q Consensus 12 ~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R-~~cr~~h~~ 71 (78)
-....||+.|++|.|+-++ +|=|+|--..+ -....++=++.|.|.+ ..|-|+|=+
T Consensus 74 ~~~~~vcK~~l~glC~kgD-~C~Flhe~~~~----k~rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGD-QCEFLHEYDLT----KMRECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred cCCceeehhhhhhhhhccC-cCcchhhhhhc----ccccccccccccccccccCCcccCCC
Confidence 4457899999999999997 99999975431 2446778889999999 799999966
No 10
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=93.50 E-value=0.02 Score=28.02 Aligned_cols=12 Identities=50% Similarity=1.384 Sum_probs=8.7
Q ss_pred CCCCCCCccccCC
Q psy15684 26 CSRPDTECKFAHP 38 (78)
Q Consensus 26 C~R~~~~CRfaHP 38 (78)
|+.++ .|.|+||
T Consensus 8 C~~~~-~C~f~HP 19 (19)
T PF14608_consen 8 CTNGD-NCPFSHP 19 (19)
T ss_pred CCCCC-cCccCCc
Confidence 77774 7777776
No 11
>KOG1595|consensus
Probab=92.92 E-value=0.032 Score=46.80 Aligned_cols=61 Identities=25% Similarity=0.443 Sum_probs=41.4
Q ss_pred CCcchh--hHHHhHHHHhCCCCCCCCCccccCCCCCc--eeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684 8 KDSRWL--QLEVCREFQRNKCSRPDTECKFAHPPANV--EVQNGRVTACYDSVHVPTPSASLLILLPM 71 (78)
Q Consensus 8 rd~r~l--~leVCReF~Rg~C~R~~~~CRfaHP~~~v--~v~~~~v~vC~D~~kGrC~R~~cr~~h~~ 71 (78)
||+|=. +-..|=||.+|.|.||| .|-|||----- .=..=+-+.|-|- |-|.|.-|-|-|..
T Consensus 227 RDPRkyhYs~tpCPefrkG~C~rGD-~CEyaHgvfEcwLHPa~YRT~~CkDg--~~C~RrvCfFAH~~ 291 (528)
T KOG1595|consen 227 RDPRKYHYSSTPCPEFRKGSCERGD-SCEYAHGVFECWLHPARYRTRKCKDG--GYCPRRVCFFAHSP 291 (528)
T ss_pred CCcccccccCccCcccccCCCCCCC-ccccccceehhhcCHHHhccccccCC--CCCccceEeeecCh
Confidence 444433 36778888899999997 89888752210 0012366777777 88888888888864
No 12
>KOG1677|consensus
Probab=91.66 E-value=0.058 Score=40.29 Aligned_cols=27 Identities=26% Similarity=0.744 Sum_probs=23.6
Q ss_pred hHHHhHHHHh-CCCCCCCCCccccCCCCC
Q psy15684 14 QLEVCREFQR-NKCSRPDTECKFAHPPAN 41 (78)
Q Consensus 14 ~leVCReF~R-g~C~R~~~~CRfaHP~~~ 41 (78)
+-++|.-|++ |.|.-|. .|+|+||...
T Consensus 176 kt~lC~~f~~tG~C~yG~-rC~F~H~~~~ 203 (332)
T KOG1677|consen 176 KTKLCPKFQKTGLCKYGS-RCRFIHGEPE 203 (332)
T ss_pred CCcCCCccccCCCCCCCC-cCeecCCCcc
Confidence 3568999999 9999995 9999999774
No 13
>KOG1595|consensus
Probab=89.74 E-value=0.2 Score=42.20 Aligned_cols=54 Identities=30% Similarity=0.551 Sum_probs=40.7
Q ss_pred HHhCCCCCCC----CCccccCCCCCceeeCC-----EEEEEEeccCCCCCcc-cccccccccce
Q psy15684 21 FQRNKCSRPD----TECKFAHPPANVEVQNG-----RVTACYDSVHVPTPSA-SLLILLPMWRC 74 (78)
Q Consensus 21 F~Rg~C~R~~----~~CRfaHP~~~v~v~~~-----~v~vC~D~~kGrC~R~-~cr~~h~~~~~ 74 (78)
|.--.|+|+. ++|-|+||-+.-..+|= +-|.|=+|.||.|.|+ +|-|-|--+-|
T Consensus 199 fKir~C~R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEc 262 (528)
T KOG1595|consen 199 FKIRRCSRPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFEC 262 (528)
T ss_pred eeecccCCccCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceehh
Confidence 4445566653 58999999887444433 5789999999999996 99998865544
No 14
>KOG1763|consensus
Probab=87.34 E-value=0.39 Score=38.63 Aligned_cols=27 Identities=37% Similarity=0.795 Sum_probs=23.8
Q ss_pred hHHHhHHHHhCCCCCCCCCccccCCCCC
Q psy15684 14 QLEVCREFQRNKCSRPDTECKFAHPPAN 41 (78)
Q Consensus 14 ~leVCReF~Rg~C~R~~~~CRfaHP~~~ 41 (78)
+-.||.-|.+|.|+-|+ -|+|+|-...
T Consensus 91 KSvvCafFk~g~C~KG~-kCKFsHdl~~ 117 (343)
T KOG1763|consen 91 KSVVCAFFKQGTCTKGD-KCKFSHDLAV 117 (343)
T ss_pred hHHHHHHHhccCCCCCC-cccccchHHH
Confidence 46799999999999996 9999998653
No 15
>KOG4791|consensus
Probab=82.34 E-value=0.66 Score=39.74 Aligned_cols=53 Identities=19% Similarity=0.384 Sum_probs=37.9
Q ss_pred HHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCC-CCcccccccc--ccc
Q psy15684 15 LEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVP-TPSASLLILL--PMW 72 (78)
Q Consensus 15 leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGr-C~R~~cr~~h--~~~ 72 (78)
+-+|+-|+-+.|-+. +|+|.|-.-... .+-+-||=+.++. |+.+.|-|-| |.|
T Consensus 32 ~t~C~~w~~~~~C~k--~C~YRHSe~~~k---r~e~~CYwe~~p~gC~k~~CgfRH~~pPL 87 (667)
T KOG4791|consen 32 ETVCTLWQEGRCCRK--VCRYRHSEIDKK---RSEIPCYWENQPTGCQKLNCGFRHNRPPL 87 (667)
T ss_pred cchhhhhhhcCcccc--cccchhhHHhhh---cCcccceeecCCCccCCCccccccCCCch
Confidence 457888888877766 688888644322 3456788888887 8888888888 655
No 16
>KOG4791|consensus
Probab=77.39 E-value=0.45 Score=40.72 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCccccccccccc
Q psy15684 15 LEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMW 72 (78)
Q Consensus 15 leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~~ 72 (78)
.+.|.-|+...|+-++ +|-|.|-.+.. |.-|+|.-|+.++|-++-|+|-|--|
T Consensus 3 ~~dcyff~ys~cKk~d-~c~~rh~E~al----~n~t~C~~w~~~~~C~k~C~YRHSe~ 55 (667)
T KOG4791|consen 3 GEDCYFFFYSTCKKGD-SCPFRHCEAAL----GNETVCTLWQEGRCCRKVCRYRHSEI 55 (667)
T ss_pred cccchhhhhhhhhccC-cCcchhhHHHh----cCcchhhhhhhcCcccccccchhhHH
Confidence 4679999999999996 99999986653 35689999999999999999999765
No 17
>KOG1039|consensus
Probab=75.79 E-value=1.3 Score=35.29 Aligned_cols=24 Identities=25% Similarity=0.786 Sum_probs=22.1
Q ss_pred HHhHHHHhCCCCCCCCCccccCCCC
Q psy15684 16 EVCREFQRNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 16 eVCReF~Rg~C~R~~~~CRfaHP~~ 40 (78)
-||+.|++|.|.=|+ -|||.|-.+
T Consensus 9 tic~~~~~g~c~~g~-~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGD-LCRLSHSLP 32 (344)
T ss_pred hhhhhcccccccccc-eeeeeccCc
Confidence 799999999999995 999999866
No 18
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=73.78 E-value=2.2 Score=33.73 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=25.2
Q ss_pred cchhhHHHhHHHHhCCCCCCCCCccccCCCC
Q psy15684 10 SRWLQLEVCREFQRNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 10 ~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~ 40 (78)
....+..||.-|.-+.|+-|+ -|+|+|--+
T Consensus 80 gvdpK~~vcalF~~~~c~kg~-~ckF~h~~e 109 (299)
T COG5252 80 GVDPKTVVCALFLNKTCAKGD-ACKFAHGKE 109 (299)
T ss_pred ccCchhHHHHHhccCccccCc-hhhhhcchH
Confidence 344568899999999999996 999999843
No 19
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=73.55 E-value=1.3 Score=23.10 Aligned_cols=14 Identities=0% Similarity=-0.247 Sum_probs=9.3
Q ss_pred cCC-CCCcccccccc
Q psy15684 56 VHV-PTPSASLLILL 69 (78)
Q Consensus 56 ~kG-rC~R~~cr~~h 69 (78)
+.| .||.++|.|+|
T Consensus 7 l~Gg~Cnd~~C~~QH 21 (23)
T PF10650_consen 7 LTGGVCNDPDCEFQH 21 (23)
T ss_pred cCCCeeCCCCCCccc
Confidence 344 77777777776
No 20
>KOG1040|consensus
Probab=71.53 E-value=2.9 Score=33.12 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHhHHHHh--CCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcc-ccccccc
Q psy15684 15 LEVCREFQR--NKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSA-SLLILLP 70 (78)
Q Consensus 15 leVCReF~R--g~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~-~cr~~h~ 70 (78)
.-+|+-+.+ -.|.|+ +.|...|=... +...-+||-.|++|.|..+ .|=|+|-
T Consensus 45 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 45 RATCEFNESREKPCERG-PICPKSHNDVS---DSRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cchhcccccCCCCccCC-CCCccccCCcc---ccCCceeehhhhhhhhhccCcCcchhh
Confidence 346666665 677777 46766665533 3558899999999999985 9999994
No 21
>KOG2202|consensus
Probab=69.90 E-value=1.9 Score=33.58 Aligned_cols=26 Identities=35% Similarity=0.866 Sum_probs=22.9
Q ss_pred hHHHhHHHHhCCCCCCCCCccccCCCC
Q psy15684 14 QLEVCREFQRNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 14 ~leVCReF~Rg~C~R~~~~CRfaHP~~ 40 (78)
+.-+|++|.++.|+||. -|-|-|+-.
T Consensus 151 rea~C~~~e~~~C~rG~-~CnFmH~k~ 176 (260)
T KOG2202|consen 151 REAICGQFERTECSRGG-ACNFMHVKR 176 (260)
T ss_pred hhhhhcccccccCCCCC-cCcchhhhh
Confidence 46799999999999994 999999853
No 22
>KOG2185|consensus
Probab=66.95 E-value=3.1 Score=34.93 Aligned_cols=26 Identities=23% Similarity=0.715 Sum_probs=21.9
Q ss_pred hHHHhHHHHhCCCCCCCCCccccCCCC
Q psy15684 14 QLEVCREFQRNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 14 ~leVCReF~Rg~C~R~~~~CRfaHP~~ 40 (78)
.+-.|--|+.|.|.=++ .|||+|-..
T Consensus 139 sMkpC~ffLeg~CRF~e-nCRfSHG~~ 164 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGE-NCRFSHGLD 164 (486)
T ss_pred hhccchHhhccccccCc-ccccccCcc
Confidence 36689999999998887 599999754
No 23
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=62.34 E-value=4.2 Score=31.87 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEec-cCCCCCc-ccccccccc
Q psy15684 15 LEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDS-VHVPTPS-ASLLILLPM 71 (78)
Q Consensus 15 leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~-~kGrC~R-~~cr~~h~~ 71 (78)
--+|+-|.+|.|+-+. .|-|+|-.+-+.- .-+-|.-| .+|.|.. ..|.+.|=+
T Consensus 104 ~V~c~~~~~g~c~s~~-~c~~lh~~d~~~s---~~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 104 SVVCKFFLRGLCKSGF-SCEFLHEYDLRSS---QGPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CcccchhccccCcCCC-ccccccCCCcccc---cCCCcccccccceeccCCCCCccccC
Confidence 4589999999999996 9999998775332 23445555 9999999 689888854
No 24
>KOG3702|consensus
Probab=56.43 E-value=5.9 Score=34.60 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=27.0
Q ss_pred CCCCCCCCccccCCCCCceee---------CC-EEEEEEeccCCCCCccccccccccc
Q psy15684 25 KCSRPDTECKFAHPPANVEVQ---------NG-RVTACYDSVHVPTPSASLLILLPMW 72 (78)
Q Consensus 25 ~C~R~~~~CRfaHP~~~v~v~---------~~-~v~vC~D~~kGrC~R~~cr~~h~~~ 72 (78)
.|.-. +|.|+|+...+.|. .+ .-+-|. -+|.|-...|+|+||.=
T Consensus 593 kCtas--DC~~sH~~~~~pvq~t~ip~~~~~~ti~~~Cr--Y~pnCrnm~C~F~HPk~ 646 (681)
T KOG3702|consen 593 KCTAS--DCNYSHAGRRIPVQPTRIPPPFPGGTIRGLCR--YRPNCRNMQCKFYHPKT 646 (681)
T ss_pred ccccc--cCcccccCCCCCCccccCCCCCCCCCccccce--eccCcCCccccccCCcc
Confidence 45544 79999988775333 01 112232 24668888899999863
No 25
>KOG3702|consensus
Probab=47.72 E-value=14 Score=32.32 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=25.8
Q ss_pred HhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCC-ccccccccc
Q psy15684 17 VCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTP-SASLLILLP 70 (78)
Q Consensus 17 VCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~-R~~cr~~h~ 70 (78)
.||- +++|.-- .|+|.||.... .| ..|. +..|-|||+
T Consensus 627 ~CrY--~pnCrnm--~C~F~HPk~cR---f~----------~~c~~~~sc~fYh~ 664 (681)
T KOG3702|consen 627 LCRY--RPNCRNM--QCKFYHPKTCR---FN----------TNCPNNPSCTFYHE 664 (681)
T ss_pred ccee--ccCcCCc--cccccCCcccc---cc----------ccCCCCcccccccC
Confidence 4543 4788776 79999998851 11 1344 789999998
No 26
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=45.43 E-value=6.8 Score=30.42 Aligned_cols=26 Identities=35% Similarity=0.865 Sum_probs=22.4
Q ss_pred hHHHhHHHH-hCCCCCCCCCccccCCCC
Q psy15684 14 QLEVCREFQ-RNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 14 ~leVCReF~-Rg~C~R~~~~CRfaHP~~ 40 (78)
+..||.||. -|-|-=|+ .|||.|--+
T Consensus 140 qpdVCKdyk~TGYCGYGD-sCKflH~R~ 166 (259)
T COG5152 140 QPDVCKDYKETGYCGYGD-SCKFLHDRS 166 (259)
T ss_pred CcccccchhhcccccCCc-hhhhhhhhh
Confidence 478999995 58999997 999999865
No 27
>KOG1813|consensus
Probab=33.92 E-value=21 Score=28.72 Aligned_cols=29 Identities=31% Similarity=0.760 Sum_probs=23.8
Q ss_pred chh-hHHHhHHHH-hCCCCCCCCCccccCCCC
Q psy15684 11 RWL-QLEVCREFQ-RNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 11 r~l-~leVCReF~-Rg~C~R~~~~CRfaHP~~ 40 (78)
+|+ +..||.||. -|-|.=|+ .|||.|--+
T Consensus 181 ~~d~qpDicKdykeTgycg~gd-SckFlh~r~ 211 (313)
T KOG1813|consen 181 RIDYQPDICKDYKETGYCGYGD-SCKFLHDRS 211 (313)
T ss_pred eeecCchhhhhhHhhCcccccc-hhhhhhhhh
Confidence 455 489999995 58999996 999999855
No 28
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=25.77 E-value=92 Score=19.05 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=20.2
Q ss_pred CCCceeeCCEEEEEEeccCCCCCccc
Q psy15684 39 PANVEVQNGRVTACYDSVHVPTPSAS 64 (78)
Q Consensus 39 ~~~v~v~~~~v~vC~D~~kGrC~R~~ 64 (78)
++++.|.|+.|+.|.|+--+.=.|++
T Consensus 4 apsihVSqSgVvy~res~es~sP~qT 29 (52)
T PF08629_consen 4 APSIHVSQSGVVYCRESDESNSPRQT 29 (52)
T ss_pred CCcEeEcccceEEEeccccCCCCCcc
Confidence 46788999999999998877655543
No 29
>KOG0153|consensus
Probab=24.10 E-value=25 Score=28.89 Aligned_cols=24 Identities=29% Similarity=0.816 Sum_probs=21.6
Q ss_pred hHHHhHHHHhCCCCCCCCCccccCC
Q psy15684 14 QLEVCREFQRNKCSRPDTECKFAHP 38 (78)
Q Consensus 14 ~leVCReF~Rg~C~R~~~~CRfaHP 38 (78)
+.-||--|-.|.|+||+ +|-|-|-
T Consensus 160 ~p~Icsf~v~geckRG~-ec~yrhE 183 (377)
T KOG0153|consen 160 RPHICSFFVKGECKRGA-ECPYRHE 183 (377)
T ss_pred CCccccceeeccccccc-ccccccc
Confidence 46799999999999996 9999996
No 30
>KOG2185|consensus
Probab=23.81 E-value=26 Score=29.54 Aligned_cols=20 Identities=5% Similarity=-0.175 Sum_probs=16.4
Q ss_pred EEEeccCCCCCcc-ccccccc
Q psy15684 51 ACYDSVHVPTPSA-SLLILLP 70 (78)
Q Consensus 51 vC~D~~kGrC~R~-~cr~~h~ 70 (78)
.|-=|+.|+|-=+ +|||+|-
T Consensus 142 pC~ffLeg~CRF~enCRfSHG 162 (486)
T KOG2185|consen 142 PCKFFLEGRCRFGENCRFSHG 162 (486)
T ss_pred cchHhhccccccCcccccccC
Confidence 4777899999764 9999994
Done!