Query psy15684
Match_columns 78
No_of_seqs 96 out of 98
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 18:53:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rpp_A Muscleblind-like protei 100.0 2.3E-31 8E-36 173.0 1.9 69 3-71 5-73 (89)
2 3d2n_A Muscleblind-like protei 100.0 4.3E-30 1.5E-34 164.7 1.0 64 8-71 2-65 (83)
3 3d2q_A Muscleblind-like protei 99.9 5E-25 1.7E-29 135.6 0.9 62 10-71 1-64 (70)
4 2e5s_A Otthump00000018578; ZF- 99.9 4.2E-24 1.4E-28 139.9 -1.6 69 3-71 8-78 (98)
5 2rhk_C Cleavage and polyadenyl 99.4 3.9E-14 1.3E-18 87.7 -1.2 59 8-72 9-68 (72)
6 2d9n_A Cleavage and polyadenyl 99.2 6.2E-13 2.1E-17 82.5 -0.4 57 10-72 5-62 (77)
7 2cqe_A KIAA1064 protein; CCCH 98.7 8.6E-10 2.9E-14 71.5 -1.6 48 14-72 12-61 (98)
8 1m9o_A Tristetraproline; Cys3H 98.6 7.1E-09 2.4E-13 62.6 -0.1 58 13-71 10-74 (77)
9 3d2q_A Muscleblind-like protei 98.1 3.9E-07 1.3E-11 55.4 -0.5 28 13-42 40-67 (70)
10 2rpp_A Muscleblind-like protei 97.9 1.7E-06 5.7E-11 55.8 0.3 29 14-44 50-78 (89)
11 3d2n_A Muscleblind-like protei 97.9 2.4E-06 8.1E-11 54.2 0.9 25 48-72 8-34 (83)
12 2e5s_A Otthump00000018578; ZF- 97.8 3.5E-06 1.2E-10 54.7 0.3 28 13-42 54-81 (98)
13 2d9n_A Cleavage and polyadenyl 97.7 3.9E-06 1.3E-10 51.6 -0.7 39 14-59 37-76 (77)
14 2rhk_C Cleavage and polyadenyl 96.5 0.0011 3.7E-08 40.5 1.7 26 14-41 43-69 (72)
15 1m9o_A Tristetraproline; Cys3H 96.3 0.0006 2E-08 40.6 0.0 25 15-40 50-75 (77)
16 2cqe_A KIAA1064 protein; CCCH 96.2 0.0016 5.3E-08 41.8 1.4 26 15-41 36-62 (98)
17 2d9m_A Zinc finger CCCH-type d 96.0 0.0018 6.2E-08 40.4 1.0 25 15-40 20-44 (69)
18 2lhn_A Nuclear polyadenylated 94.3 0.0029 9.9E-08 40.2 0.0 23 14-40 8-30 (80)
19 2lhn_A Nuclear polyadenylated 91.6 0.024 8.1E-07 35.9 0.0 43 16-73 32-74 (80)
20 3u1l_A PRE-mRNA-splicing facto 89.4 0.12 4E-06 37.5 1.2 26 15-41 70-95 (240)
21 3u9g_A Zinc finger CCCH-type a 73.5 0.29 1E-05 36.3 -2.0 45 11-70 147-196 (229)
22 3u9g_A Zinc finger CCCH-type a 51.7 5.7 0.00019 29.4 1.4 25 14-40 174-198 (229)
23 3u1l_A PRE-mRNA-splicing facto 32.9 7.5 0.00026 27.9 -0.5 25 46-70 67-92 (240)
24 3v33_A Ribonuclease ZC3H12A; r 26.8 13 0.00046 27.0 0.0 16 25-41 200-215 (223)
No 1
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=99.96 E-value=2.3e-31 Score=172.97 Aligned_cols=69 Identities=51% Similarity=0.919 Sum_probs=66.9
Q ss_pred cccCCCCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684 3 SLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPM 71 (78)
Q Consensus 3 ~~~~~rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~ 71 (78)
++.++||++|++++|||||+||+|+|++++|||+||+++++++++++++|+||+||+|+|++|+|+||.
T Consensus 5 ~~~~~~~~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~~Cky~H~~ 73 (89)
T 2rpp_A 5 SSGPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRENCKYLHPP 73 (89)
T ss_dssp CCSCCCSCSSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCTTCCSBCCC
T ss_pred ccccccCCCcchhhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCCCcceecCH
Confidence 678899999999999999999999999999999999999999999999999999999999999999996
No 2
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=99.95 E-value=4.3e-30 Score=164.65 Aligned_cols=64 Identities=56% Similarity=1.058 Sum_probs=60.8
Q ss_pred CCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPM 71 (78)
Q Consensus 8 rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~ 71 (78)
||++|++++|||||+||.|+|++++|||+||++.+.++++++++|+||+||+|+|+.|+|+||.
T Consensus 2 ~~~~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~~C~y~H~~ 65 (83)
T 3d2n_A 2 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHPP 65 (83)
T ss_dssp --CGGGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCSSCSSCCCC
T ss_pred CCcccccchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCCCcceeCCh
Confidence 8999999999999999999999999999999999999999999999999999999999999986
No 3
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.89 E-value=5e-25 Score=135.59 Aligned_cols=62 Identities=35% Similarity=0.705 Sum_probs=54.9
Q ss_pred cchhhHHHhHHHHhCCCCCCCCCccccCCCCCc--eeeCCEEEEEEeccCCCCCcccccccccc
Q psy15684 10 SRWLQLEVCREFQRNKCSRPDTECKFAHPPANV--EVQNGRVTACYDSVHVPTPSASLLILLPM 71 (78)
Q Consensus 10 ~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v--~v~~~~v~vC~D~~kGrC~R~~cr~~h~~ 71 (78)
++|++++||++|++|.|+||+++|+|+||++.+ ++.++++++|+||+||+|+|+.|+|+|+.
T Consensus 1 ~r~~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~ 64 (70)
T 3d2q_A 1 SRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 64 (70)
T ss_dssp ---CEEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCC
T ss_pred CCcccchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCH
Confidence 589999999999999999998889999998764 45688999999999999999999999985
No 4
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.2e-24 Score=139.88 Aligned_cols=69 Identities=36% Similarity=0.586 Sum_probs=62.8
Q ss_pred cccCCCCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCce--eeCCEEEEEEeccCCCCCcccccccccc
Q psy15684 3 SLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVE--VQNGRVTACYDSVHVPTPSASLLILLPM 71 (78)
Q Consensus 3 ~~~~~rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~--v~~~~v~vC~D~~kGrC~R~~cr~~h~~ 71 (78)
++.+.|-.++++++|||+|+||.|+|++++|+|+||++.+. +.++++++|+||+||+|.|+.|+|+|+.
T Consensus 8 ~~~~~K~~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~ 78 (98)
T 2e5s_A 8 STATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPP 78 (98)
T ss_dssp SSCCCCCCCSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCC
T ss_pred ccccccccChhhhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCCh
Confidence 56778889999999999999999999987899999988643 4578999999999999999999999986
No 5
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.35 E-value=3.9e-14 Score=87.75 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=52.1
Q ss_pred CCcchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccC-CCCCccccccccccc
Q psy15684 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVH-VPTPSASLLILLPMW 72 (78)
Q Consensus 8 rd~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~k-GrC~R~~cr~~h~~~ 72 (78)
-|+.|.+.+||+.|++|.|++|+ .|+|+|+.+. .+..+|..|++ |.|.++.|+|.|+.-
T Consensus 9 ~~~~~~k~~vCk~fl~G~C~~G~-~C~fsH~~~~-----~~~~~C~~f~~~G~C~~~~C~y~H~~p 68 (72)
T 2rhk_C 9 SHMSGEKTVVCKHWLRGLCKKGD-QCEFLHEYDM-----TKMSECYFYSKFGECSNKECPFLHIDP 68 (72)
T ss_dssp CSSSCCCCSBCHHHHTTCCCCGG-GSSSBCSCCT-----TSCCBCHHHHHHSCCSBTTCCSBCCCC
T ss_pred ccCCCCcCeeCHHHhcCCCCCCC-CCCCcccccc-----ccCCcccccCCCCCCCCCCeeccCCCc
Confidence 47788889999999999999997 6999999753 35678999999 999999999999754
No 6
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.2e-13 Score=82.48 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=49.6
Q ss_pred cchhhHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccC-CCCCccccccccccc
Q psy15684 10 SRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVH-VPTPSASLLILLPMW 72 (78)
Q Consensus 10 ~r~l~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~k-GrC~R~~cr~~h~~~ 72 (78)
.+|.+.+||+.|++|.|.+|+ .|+|+|+... .+..+|..|++ |.|..+.|+|.|..-
T Consensus 5 ~~~~k~~~C~~fl~G~C~~G~-~C~fsH~~~~-----~~~~~C~~f~~~G~C~~~~C~f~H~~~ 62 (77)
T 2d9n_A 5 SSGEKTVVCKHWLRGLCKKGD-QCEFLHEYDM-----TKMPECYFYSKFGECSNKECPFLHIDP 62 (77)
T ss_dssp CSCCTTSBCHHHHTTCCSCTT-SSSSBCSCCT-----TTSCBCHHHHHTCCCCCSSCSSBCCCT
T ss_pred CCCCcceeCHhHccCcCCCCC-CCCCcccccc-----CcCCCCcccCCCCccCCCCeeccCCCc
Confidence 567788999999999999997 9999999764 24558999999 999999999999753
No 7
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.69 E-value=8.6e-10 Score=71.47 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=42.6
Q ss_pred hHHHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEecc-CCCCCc-cccccccccc
Q psy15684 14 QLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV-HVPTPS-ASLLILLPMW 72 (78)
Q Consensus 14 ~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~-kGrC~R-~~cr~~h~~~ 72 (78)
+.++|+.|++|.|++|+ .|+|+|+ ..+|..|+ +|.|.. ..|+|.|+..
T Consensus 12 k~~lC~~f~~G~C~~G~-~C~f~H~----------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 12 KRELCKFYITGFCARAE-NCPYMHG----------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCSBCTTTTTTCCSCST-TCSSBSS----------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCccCcccccCcCCCCC-CCCCCCC----------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 46799999999999996 9999999 45699994 999999 6999999865
No 8
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.56 E-value=7.1e-09 Score=62.58 Aligned_cols=58 Identities=17% Similarity=0.382 Sum_probs=24.7
Q ss_pred hhHHHhHHHH-hCCCCCCCCCccccCCCCCcee----eCCEEEEEEecc-CCCCCcc-cccccccc
Q psy15684 13 LQLEVCREFQ-RNKCSRPDTECKFAHPPANVEV----QNGRVTACYDSV-HVPTPSA-SLLILLPM 71 (78)
Q Consensus 13 l~leVCReF~-Rg~C~R~~~~CRfaHP~~~v~v----~~~~v~vC~D~~-kGrC~R~-~cr~~h~~ 71 (78)
.+.++|+.|+ .|.|..|+ .|+|+|+.+.... ..-+..+|.+|. .|.|.++ .|+|.|+.
T Consensus 10 ~kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~ 74 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGA-KCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNP 74 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTT-TCSSCSSSCCGGGTC-------------------------------
T ss_pred ccchhCHHhhhCCCcCCCC-CccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCC
Confidence 3568999995 89999996 9999999764321 122457898876 8999985 99999974
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.06 E-value=3.9e-07 Score=55.35 Aligned_cols=28 Identities=39% Similarity=1.032 Sum_probs=25.0
Q ss_pred hhHHHhHHHHhCCCCCCCCCccccCCCCCc
Q psy15684 13 LQLEVCREFQRNKCSRPDTECKFAHPPANV 42 (78)
Q Consensus 13 l~leVCReF~Rg~C~R~~~~CRfaHP~~~v 42 (78)
.+.+||.+|++|.|+|+ .|+|+|+++++
T Consensus 40 ~~~~vC~~flkG~C~r~--~C~y~H~~~~L 67 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE--KCKYFHPPAHL 67 (70)
T ss_dssp TEEEBCHHHHTTCCCCT--TCCSBCCCHHH
T ss_pred CcceeccccCcCCCCCC--CcCeeCCHHHH
Confidence 35789999999999999 79999998764
No 10
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.91 E-value=1.7e-06 Score=55.76 Aligned_cols=29 Identities=31% Similarity=0.879 Sum_probs=26.0
Q ss_pred hHHHhHHHHhCCCCCCCCCccccCCCCCcee
Q psy15684 14 QLEVCREFQRNKCSRPDTECKFAHPPANVEV 44 (78)
Q Consensus 14 ~leVCReF~Rg~C~R~~~~CRfaHP~~~v~v 44 (78)
++.||.+|++|.|+|+ .|||.||+.+++.
T Consensus 50 ~~~vC~dflkG~C~r~--~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE--NCKYLHPPTHLKT 78 (89)
T ss_dssp BEEBCHHHHHTCCCCT--TCCSBCCCHHHHH
T ss_pred ceeeehhhhhCcCCCC--CcceecCHHHHHH
Confidence 5889999999999999 7999999998653
No 11
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.90 E-value=2.4e-06 Score=54.19 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=23.4
Q ss_pred EEEEEEeccCCCCCcc--ccccccccc
Q psy15684 48 RVTACYDSVHVPTPSA--SLLILLPMW 72 (78)
Q Consensus 48 ~v~vC~D~~kGrC~R~--~cr~~h~~~ 72 (78)
++.||.||++|+|+|+ .|+|.||.-
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 7899999999999998 999999963
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=3.5e-06 Score=54.65 Aligned_cols=28 Identities=36% Similarity=0.990 Sum_probs=25.2
Q ss_pred hhHHHhHHHHhCCCCCCCCCccccCCCCCc
Q psy15684 13 LQLEVCREFQRNKCSRPDTECKFAHPPANV 42 (78)
Q Consensus 13 l~leVCReF~Rg~C~R~~~~CRfaHP~~~v 42 (78)
.+..||++|++|.|+|+ .|||+||+.++
T Consensus 54 ~~~~vC~~flkG~C~r~--~C~y~H~~~~l 81 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE--KCKYFHPPAHL 81 (98)
T ss_dssp CEEEBCHHHHHTCCCCT--TCCSBCCCHHH
T ss_pred CccccchhhccCCCCCC--CcCccCChHHH
Confidence 46789999999999999 79999999864
No 13
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=3.9e-06 Score=51.63 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=31.3
Q ss_pred hHHHhHHHHh-CCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCC
Q psy15684 14 QLEVCREFQR-NKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVP 59 (78)
Q Consensus 14 ~leVCReF~R-g~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGr 59 (78)
+..+|+.|++ |.|. + .+|+|+|+.+. .+...|.+|++|.
T Consensus 37 ~~~~C~~f~~~G~C~-~-~~C~f~H~~~~-----~~~~~C~~f~~g~ 76 (77)
T 2d9n_A 37 KMPECYFYSKFGECS-N-KECPFLHIDPE-----SKIKDCPWSGPSS 76 (77)
T ss_dssp TSCBCHHHHHTCCCC-C-SSCSSBCCCTT-----SSCSSSSCCTTTC
T ss_pred cCCCCcccCCCCccC-C-CCeeccCCCcc-----ccCCCCcccccCC
Confidence 4568999999 9999 5 39999998763 3566888888874
No 14
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=40.47 Aligned_cols=26 Identities=27% Similarity=0.727 Sum_probs=22.5
Q ss_pred hHHHhHHHHh-CCCCCCCCCccccCCCCC
Q psy15684 14 QLEVCREFQR-NKCSRPDTECKFAHPPAN 41 (78)
Q Consensus 14 ~leVCReF~R-g~C~R~~~~CRfaHP~~~ 41 (78)
+.++|+.|++ |.|++ + +|+|+|+.+.
T Consensus 43 ~~~~C~~f~~~G~C~~-~-~C~y~H~~p~ 69 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-K-ECPFLHIDPE 69 (72)
T ss_dssp SCCBCHHHHHHSCCSB-T-TCCSBCCCCC
T ss_pred cCCcccccCCCCCCCC-C-CeeccCCCcc
Confidence 4568999999 99999 3 8999998765
No 15
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.34 E-value=0.0006 Score=40.63 Aligned_cols=25 Identities=32% Similarity=0.953 Sum_probs=0.0
Q ss_pred HHHhHHHH-hCCCCCCCCCccccCCCC
Q psy15684 15 LEVCREFQ-RNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 15 leVCReF~-Rg~C~R~~~~CRfaHP~~ 40 (78)
..+|+.|. .|.|.+|+ .|+|+|+.+
T Consensus 50 ~~~C~~f~~~G~C~~G~-~C~f~H~~~ 75 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGS-RCHFIHNPT 75 (77)
T ss_dssp ---------------------------
T ss_pred CCcccchhhCcCCCCcC-cCCCCCCCC
Confidence 57999886 89999996 999999864
No 16
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.20 E-value=0.0016 Score=41.82 Aligned_cols=26 Identities=27% Similarity=0.692 Sum_probs=22.4
Q ss_pred HHHhHHH-HhCCCCCCCCCccccCCCCC
Q psy15684 15 LEVCREF-QRNKCSRPDTECKFAHPPAN 41 (78)
Q Consensus 15 leVCReF-~Rg~C~R~~~~CRfaHP~~~ 41 (78)
..+|+.| ++|.|..|+ .|+|+|++..
T Consensus 36 ~~~C~~f~~~G~C~~G~-~C~f~H~~~~ 62 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGD-DCMFSHDPLT 62 (98)
T ss_dssp SSBCSHHHHTSCCSSCT-TCSSBCCCCC
T ss_pred CCcCcCcccCCcCCCCC-CCcccCCCCc
Confidence 3579999 599999996 9999999764
No 17
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.0018 Score=40.44 Aligned_cols=25 Identities=32% Similarity=0.865 Sum_probs=22.3
Q ss_pred HHHhHHHHhCCCCCCCCCccccCCCC
Q psy15684 15 LEVCREFQRNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 15 leVCReF~Rg~C~R~~~~CRfaHP~~ 40 (78)
-++|+.|+.|.|..|+ .|.|||-.+
T Consensus 20 ~~LC~~~~~G~C~~G~-~C~FAHG~~ 44 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGN-SCKFAHGNA 44 (69)
T ss_dssp CSBCHHHHHSCCSSCS-SCSSBSSHH
T ss_pred cccCcccCcCCCCCCC-ccCCcCCHH
Confidence 3899999999999996 999999754
No 18
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.32 E-value=0.0029 Score=40.17 Aligned_cols=23 Identities=30% Similarity=0.736 Sum_probs=16.0
Q ss_pred hHHHhHHHHhCCCCCCCCCccccCCCC
Q psy15684 14 QLEVCREFQRNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 14 ~leVCReF~Rg~C~R~~~~CRfaHP~~ 40 (78)
.+|.|+-+. .|++. +|.|+||.+
T Consensus 8 ~~e~CKf~~--~Ctn~--~C~f~Hp~~ 30 (80)
T 2lhn_A 8 SLEQCKFGT--HCTNK--RCKYRHARS 30 (80)
Confidence 467776555 67774 688888765
No 19
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=91.63 E-value=0.024 Score=35.91 Aligned_cols=43 Identities=33% Similarity=0.539 Sum_probs=31.3
Q ss_pred HHhHHHHhCCCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCcccccccccccc
Q psy15684 16 EVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMWR 73 (78)
Q Consensus 16 eVCReF~Rg~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~~~~ 73 (78)
..||.+. .|++. +|.|+||+. +.|. | --.|.+.+|.|.||.=|
T Consensus 32 ~~Cr~g~--~C~~~--~C~f~HP~~---------~~Cr-f-~~~C~n~~C~F~Hp~g~ 74 (80)
T 2lhn_A 32 IMCREGA--NCTRI--DCLFGHPIN---------EDCR-F-GVNCKNIYCLFRHPPGR 74 (80)
Confidence 4788774 89996 799999942 3351 1 12799999999999643
No 20
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.39 E-value=0.12 Score=37.50 Aligned_cols=26 Identities=23% Similarity=0.562 Sum_probs=22.5
Q ss_pred HHHhHHHHhCCCCCCCCCccccCCCCC
Q psy15684 15 LEVCREFQRNKCSRPDTECKFAHPPAN 41 (78)
Q Consensus 15 leVCReF~Rg~C~R~~~~CRfaHP~~~ 41 (78)
..+|--|-||.|.||+ +|.|.|-.+.
T Consensus 70 ~~~C~ffakG~C~~G~-~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGP-KCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHHTTCCSCGG-GCSSBBSCCC
T ss_pred CeEcCccccCCCCCCC-CCCccCCCCC
Confidence 4599999999999996 9999997554
No 21
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=73.52 E-value=0.29 Score=36.26 Aligned_cols=45 Identities=18% Similarity=0.451 Sum_probs=31.5
Q ss_pred chhhHHHhHHHHhC-----CCCCCCCCccccCCCCCceeeCCEEEEEEeccCCCCCccccccccc
Q psy15684 11 RWLQLEVCREFQRN-----KCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLP 70 (78)
Q Consensus 11 r~l~leVCReF~Rg-----~C~R~~~~CRfaHP~~~v~v~~~~v~vC~D~~kGrC~R~~cr~~h~ 70 (78)
-|+-.|||..| +| .|+-.+ .|...| +|--|++|.|...+|+..|.
T Consensus 147 p~lLPeiC~~Y-kG~g~~g~C~~~~-~C~kLH-------------IC~~Fl~G~C~f~~CkRsH~ 196 (229)
T 3u9g_A 147 PFFLPEICKSY-KGEGRKQTCGQPQ-PCERLH-------------ICEHFTRGNCSYLNCLRSHN 196 (229)
T ss_dssp GGGSCCBCTTC-CCSSSCCSCSSSS-CCCSBC-------------SCHHHHTTCCCCSSCSSCCC
T ss_pred CccCchHHHHh-CCCCCCCcCCCCC-CCccee-------------ccchhhcCCcCCCCccCccC
Confidence 35667888888 75 555553 444444 67788888888888888875
No 22
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=51.73 E-value=5.7 Score=29.36 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=21.9
Q ss_pred hHHHhHHHHhCCCCCCCCCccccCCCC
Q psy15684 14 QLEVCREFQRNKCSRPDTECKFAHPPA 40 (78)
Q Consensus 14 ~leVCReF~Rg~C~R~~~~CRfaHP~~ 40 (78)
++-||+-|++|.|+.. .||-+|.-.
T Consensus 174 kLHIC~~Fl~G~C~f~--~CkRsH~~~ 198 (229)
T 3u9g_A 174 RLHICEHFTRGNCSYL--NCLRSHNLM 198 (229)
T ss_dssp SBCSCHHHHTTCCCCS--SCSSCCCTT
T ss_pred ceeccchhhcCCcCCC--CccCccCcc
Confidence 5889999999999993 899999854
No 23
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=32.94 E-value=7.5 Score=27.90 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=20.7
Q ss_pred CCEEEEEEeccCCCCCcc-ccccccc
Q psy15684 46 NGRVTACYDSVHVPTPSA-SLLILLP 70 (78)
Q Consensus 46 ~~~v~vC~D~~kGrC~R~-~cr~~h~ 70 (78)
.++.-+|.=|.||.|.++ .|.|.|.
T Consensus 67 ~~~~~~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 67 DGQLFFCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp TTCCSBCHHHHTTCCSCGGGCSSBBS
T ss_pred CCCCeEcCccccCCCCCCCCCCccCC
Confidence 345568988999999997 5999994
No 24
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=26.84 E-value=13 Score=26.96 Aligned_cols=16 Identities=38% Similarity=0.847 Sum_probs=0.0
Q ss_pred CCCCCCCCccccCCCCC
Q psy15684 25 KCSRPDTECKFAHPPAN 41 (78)
Q Consensus 25 ~C~R~~~~CRfaHP~~~ 41 (78)
+|+=|. .|||.||...
T Consensus 200 ~~~~~~-~~~~~~~~~~ 215 (223)
T 3v33_A 200 KCTYGI-KCRFFHPERP 215 (223)
T ss_dssp -----------------
T ss_pred ccccCC-cceecCCccC
Confidence 688884 9999999753
Done!