RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15684
         (78 letters)



>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger. 
          Length = 27

 Score = 26.8 bits (60), Expect = 0.23
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 16 EVCREFQRNKCSRPDTECKFAHPP 39
          E+C+ F+R  C R D  CKFAHP 
Sbjct: 5  ELCKFFKRGYCPRGD-RCKFAHPL 27


>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and
          similar). 
          Length = 27

 Score = 25.6 bits (57), Expect = 0.55
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 16 EVCREFQRNK-CSRPDTECKFAHPP 39
          E+CR F R   C   D  CKFAH  
Sbjct: 4  ELCRFFSRTGTCKYGDR-CKFAHGQ 27


>gnl|CDD|215381 PLN02711, PLN02711, Probable galactinol--sucrose
           galactosyltransferase.
          Length = 777

 Score = 26.3 bits (58), Expect = 1.7
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 11/38 (28%)

Query: 18  CREFQRNKCSRPDTECKFAHP------PANVEVQNGRV 49
           CRE +RNKC       +F+H       P ++E  +G+ 
Sbjct: 606 CRETRRNKC-----ASQFSHTVTAKASPKDIEWNSGKS 638


>gnl|CDD|226790 COG4340, COG4340, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 226

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 13/70 (18%)

Query: 4   LLNGKDSRWLQLEVCREFQ------------RNKCSRPDTECKFAHPPANVEVQNGRVTA 51
               +D   L   V R F+            R   +  +       P + +E+   R+ A
Sbjct: 69  HWQSRDYNPLNGGVQRWFEPLTDAIADHPVTRGLIAAFELFDPL-SPTSEIEMHQFRIEA 127

Query: 52  CYDSVHVPTP 61
             D   +P P
Sbjct: 128 RTDEQGLPAP 137


>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
          Length = 498

 Score = 25.1 bits (55), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%)

Query: 38  PPANVEVQNGRVTACYDSVHVPTPSASLLILL 69
            P  V   +GR+      V  PTP+ +LLILL
Sbjct: 213 RPLPVIFHDGRL------VKRPTPATALLILL 238


>gnl|CDD|219316 pfam07162, B9-C2, Ciliary basal body-associated, B9 protein.  The
           B9-C2 domain is found in proteins associated with the
           ciliary basal body. B9 domains were identified as a
           specific family of C2 domains. There are three
           sub-families represented by this family, notably,
           Mks1-Xbx7, Stumpy-Tza1 and Tza2 groups of proteins.
           Mutations in human Mks1 result in the developmental
           disorder Mechler-Gruber syndrome; mutations in mouse
           Stumpy lead to perinatal hydrocephalus and severe
           polycystic kidney disease. All the three distinct types
           of B9-C2 proteins cooperatively localise to the basal
           body or centrosome of cilia.
          Length = 165

 Score = 24.5 bits (54), Expect = 6.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 53  YDSVHVPTPSASLLILLPMWR 73
           Y + HVP       + +P WR
Sbjct: 93  YGACHVPLTPGKHELRVPTWR 113


>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain.  This domain is
           found in Plasmodium Duffy binding proteins. Plasmodium
           vivax and Plasmodium knowlesi merozoites invade human
           erythrocytes that express Duffy blood group surface
           determinants. The Duffy receptor family is localised in
           micronemes, an organelle found in all organisms of the
           phylum Apicomplexa.
          Length = 276

 Score = 24.2 bits (53), Expect = 7.4
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 16  EVCREFQRNK-CSRPDTECKFA 36
           + C+E + NK CS+  T+CK A
Sbjct: 210 KKCKEKKCNKYCSKKCTKCKNA 231


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.133    0.440 

Gapped
Lambda     K      H
   0.267   0.0763    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,705,861
Number of extensions: 250440
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 7
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)