RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15684
(78 letters)
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain,
alternative splicing, metal- binding, nucleus,
RNA-binding, zinc, zinc-finger, metal binding; 2.70A
{Homo sapiens}
Length = 83
Score = 80.1 bits (197), Expect = 6e-22
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
+D++WL LEVCREFQR CSRPDTECKFAHP + +V+NGRV AC+DS+
Sbjct: 2 RDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSL 50
Score = 32.0 bits (72), Expect = 0.004
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 14 QLEVCREFQRNKCSRPDTECKFAHPPANVEVQ---NGRVTA 51
++ C + + +CSR + CK+ HPP +++ Q NGR
Sbjct: 42 RVIACFDSLKGRCSREN--CKYLHPPPHLKTQLEINGRNNL 80
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative
splicing, cytoplasm, metal-binding, nucleus,
RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Length = 89
Score = 76.0 bits (186), Expect = 2e-20
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 1 MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSV 56
S +D++WL LEVCR+FQR CSR D ECKFAHPP + +V+NGRV AC+DS+
Sbjct: 3 SGSSGPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSL 58
Score = 33.6 bits (76), Expect = 0.001
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 17 VCREFQRNKCSRPDTECKFAHPPANVEVQ 45
C + + +CSR + CK+ HPP +++ Q
Sbjct: 53 ACFDSLKGRCSREN--CKYLHPPTHLKTQ 79
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform
1, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 64.5 bits (156), Expect = 1e-15
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MNSLLNGKDSRWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSVHV 58
S K R +LEVCREFQR C+R +T+C+FAHP + ++ + VT C D +
Sbjct: 6 SGSTATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKG 65
Score = 32.2 bits (72), Expect = 0.005
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 17 VCREFQRNKCSRPDTECKFAHPPANVEVQ 45
VC ++ + +C R CK+ HPPA+++ +
Sbjct: 58 VCMDYIKGRCMREK--CKYFHPPAHLQAK 84
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain,
alternative splicing, metal- binding, nucleus,
RNA-binding, zinc, zinc-finger, metal binding; 1.50A
{Homo sapiens} PDB: 3d2s_A
Length = 70
Score = 62.4 bits (151), Expect = 3e-15
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 10 SRWLQLEVCREFQRNKCSRPDTECKFAHPPAN--VEVQNGRVTACYDSV 56
SR +LEVCRE+QR C+R + +C+FAHP + ++ + VT C D +
Sbjct: 1 SRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYI 49
Score = 32.3 bits (73), Expect = 0.002
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 17 VCREFQRNKCSRPDTECKFAHPPANVEVQ 45
VC ++ + +CSR CK+ HPPA+++ +
Sbjct: 44 VCMDYIKGRCSREK--CKYFHPPAHLQAK 70
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4;
influenza A, nonstructural protein, viral protein: HOST
complex, Zn finger; 1.95A {Homo sapiens}
Length = 72
Score = 29.4 bits (66), Expect = 0.027
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 8 KDSRWLQLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYD 54
+ VC+ + R C + D +C+F H E +++ CY
Sbjct: 9 SHMSGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMSECYF 49
Score = 24.4 bits (53), Expect = 2.1
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 17 VCREFQRN-KCSRPDTECKFAHPPANVEV 44
C + + +CS + C F H ++
Sbjct: 46 ECYFYSKFGECSNKE--CPFLHIDPESKI 72
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit;
CCCH zinc-finger, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 77
Score = 27.9 bits (62), Expect = 0.11
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 16 EVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYD 54
VC+ + R C + D C+F H E ++ CY
Sbjct: 11 VVCKHWLRGLCKKGDQ-CEFLH-----EYDMTKMPECYF 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.31
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 16/73 (21%)
Query: 14 QLEVCREFQRNKCSRPDTECKFAHPPANVEVQNGRVTACYDSVHVPTPSASLLILLPMW- 72
++ + N SR D + + + S LL+LL +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSS---NIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQN 255
Query: 73 ---------RCRM 76
C++
Sbjct: 256 AKAWNAFNLSCKI 268
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding
protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Length = 77
Score = 26.8 bits (59), Expect = 0.35
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 16 EVCREFQRNKCSRPDTECKFAHPP 39
E+CR + + R +C+FAH
Sbjct: 13 ELCRTYSESGRCRYGAKCQFAHGL 36
Score = 24.9 bits (54), Expect = 1.9
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 16 EVCREFQRN-KCSRPDTECKFAHPP 39
E+C +F+ +C C F H P
Sbjct: 51 ELCHKFKLQGRCPYGSR-CHFIHNP 74
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Length = 98
Score = 25.8 bits (56), Expect = 0.98
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 16 EVCREFQRNKCSRPDTECKFAHPP 39
E+C+ + C+R + C + H
Sbjct: 14 ELCKFYITGFCARAE-NCPYMHGD 36
Score = 25.4 bits (55), Expect = 1.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 17 VCREF-QRNKCSRPDTECKFAHPPANVEVQN 46
C+ + C D +C F+H P E +
Sbjct: 38 PCKLYHTTGNCINGD-DCMFSHDPLTEETRE 67
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 24.7 bits (54), Expect = 3.8
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 37 HPPANVEVQNGRVTACYDSVHVPTPSASLLILL----PM 71
P + G V H+P P L+L+ PM
Sbjct: 215 RAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPM 253
>4fgm_A Aminopeptidase N family protein; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis
L2TR}
Length = 597
Score = 24.6 bits (52), Expect = 4.4
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 55 SVHVPTPSASLLILLPMWR 73
S+ + + + LP W
Sbjct: 19 SLTIEQTNDEQELWLPNWI 37
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase,
phosphorylation, transferase-antibiotic COMP; HET: ANP
B31; 2.10A {Enterococcus faecalis} PDB: 2b0q_A* 1l8t_A*
3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Length = 263
Score = 23.8 bits (51), Expect = 8.1
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 28 RPDTECKFAH---PPANVEVQNGRVTACYD 54
+P+ E F+H +N+ V++G+V+ D
Sbjct: 178 KPEEELVFSHGDLGDSNIFVKDGKVSGFID 207
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein;
1.80A {Rattus norvegicus}
Length = 229
Score = 23.6 bits (50), Expect = 9.9
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 15 LEVCREFQRNKCSRPDTECKFAH 37
L +C F R CS + C +H
Sbjct: 175 LHICEHFTRGNCSYLN--CLRSH 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.440
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,151,886
Number of extensions: 49535
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 23
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)