RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15684
         (78 letters)



>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
           protein {Canine parvovirus [TaxId: 10788]}
          Length = 548

 Score = 24.5 bits (53), Expect = 1.7
 Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 12/46 (26%)

Query: 29  PDTECKFA-----------HPPANVEVQNGRV-TACYDSVHVPTPS 62
            DT+ K             + P  + V+     T  YD       S
Sbjct: 438 FDTDLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNQYDPDASANMS 483


>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 22.7 bits (49), Expect = 1.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 16 EVCREFQRNKCSRPDTECKFAH 37
          E+CR F+ +   +   +C+FAH
Sbjct: 7  ELCRPFEESGTCKYGEKCQFAH 28


>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE)
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 276

 Score = 24.3 bits (52), Expect = 1.8
 Identities = 5/48 (10%), Positives = 16/48 (33%), Gaps = 4/48 (8%)

Query: 15  LEVCREFQRNKCSRPDTECKFAHPPANVEVQNG----RVTACYDSVHV 58
           + V ++  +      +      H  A + + +G    +    +D +  
Sbjct: 108 IMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIA 155


>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 22.8 bits (49), Expect = 2.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 16 EVCREFQRNKCSRPDTECKFAH 37
          E+CR +  +   R   +C+FAH
Sbjct: 10 ELCRTYSESGRCRYGAKCQFAH 31


>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
          protein C19orf7 (KIAA1064) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 56

 Score = 21.4 bits (45), Expect = 9.6
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 18 CREFQ-RNKCSRPDTECKFAHPPANVEVQN 46
          C+ +     C   D +C F+H P   E + 
Sbjct: 3  CKLYHTTGNCINGD-DCMFSHDPLTEETRE 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.440 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 297,339
Number of extensions: 10854
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 8
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)