BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15688
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R90|A Chain A, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|B Chain B, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|C Chain C, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|D Chain D, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|E Chain E, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|F Chain F, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|G Chain G, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|H Chain H, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|I Chain I, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|J Chain J, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|K Chain K, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
pdb|3R90|L Chain L, Crystal Structure Of Malignant T Cell-Amplified Sequence 1
Protein
Length = 188
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P TIV+IMA G HAL +G+ +S +DI +VNKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>pdb|3D79|A Chain A, Crystal Structure Of Hypothetical Protein Ph0734.1 From
Hyperthermophilic Archaea Pyrococcus Horikoshii Ot3
Length = 179
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
M PG+ I +G V ++ E LAIG+ +S + N+G V+ H+
Sbjct: 114 MAPGIVDADEGIK---EGDFVFVVEEKYGRPLAIGIALMSGKVMKEKNRGKAVKVIHHAR 170
Query: 61 DGLWNM 66
D +W +
Sbjct: 171 DKIWEV 176
>pdb|2JKB|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In
Complex With 2,7-Anhydro-Neu5ac
Length = 686
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 8 PGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGI 51
P + I +DK T+ ++ EGK+H LA G S D+I NK I
Sbjct: 165 PISNINGIDKATLGAVNREGKEHYLAKG----SIDEISLFNKAI 204
>pdb|2VW0|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW1|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|2VW2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae
pdb|4FOQ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 2-Aminoethanesulfonic Acid
pdb|4FOV|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Cyclohexyl-1-Propylsulfonic
Acid
pdb|4FOW|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With 3-Ammoniopropane-1-Sulfonate
pdb|4FOY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-(Benzylammonio)ethanesulfonate
pdb|4FP2|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2[(Cyclohexylmethyl)ammonio]sulfonate
pdb|4FP3|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(Furan-2-Ylmethyl)ammonio]sulfonate
pdb|4FPC|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPE|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPF|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chlorobenzyl)ammonio]ethanesulfonate
pdb|4FPG|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Hydroxybenzyl)ammonio]ethanesulfonate
pdb|4FPH|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Fluorobenzyl)ammonio]ethanesulfonate
pdb|4FPJ|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPK|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Methylbenzyl)ammonio]ethanesulfonate
pdb|4FPL|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3,4-Dichlorobenzyl)ammonio]ethanesulfonate
pdb|4FPO|B Chain B, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Chloro-4-Methoxybenzyl)ammonio]ethanesulfonate
pdb|4FPY|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(3-Bromobenzyl)ammonio]ethanesulfonate
pdb|4FQ4|A Chain A, Crystal Structure Of The Nanb Sialidase From Streptococcus
Pneumoniae In Complex With
2-[(4-Fluoro-3-Methylbenzyl)ammonio]ethanesulfonate
Length = 697
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 8 PGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGI 51
P + I +DK T+ ++ EGK+H LA G S D+I NK I
Sbjct: 176 PISNINGIDKATLGAVNREGKEHYLAKG----SIDEISLFNKAI 215
>pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
pdb|2AUS|A Chain A, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
Length = 334
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 5 LTSPGAII--TPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVE 54
LT PG + + KG +V+IM K +A+G +ST +++ +KGI V+
Sbjct: 269 LTVPGIVKLNAGIKKGDLVAIMTL-KDELVALGKAMMSTQEMIERSKGIAVD 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,158,623
Number of Sequences: 62578
Number of extensions: 67104
Number of successful extensions: 177
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)