BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15688
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DER1|MCTS1_XENTR Malignant T-cell-amplified sequence 1 OS=Xenopus tropicalis
GN=mcts1 PE=2 SV=1
Length = 181
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 56/70 (80%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P T+V+IMAEGKQHAL +G+ +S DDI +VNKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAAADTVVAIMAEGKQHALCVGVMKMSADDIEKVNKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>sp|Q6NRJ7|MCS1B_XENLA Malignant T-cell-amplified sequence 1-B OS=Xenopus laevis
GN=mcts1-b PE=2 SV=1
Length = 181
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 56/70 (80%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P T+V+IMAEGKQHAL +G+ +S DDI +VNKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAAAETVVAIMAEGKQHALCVGVMKMSADDIEKVNKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>sp|Q5PPY1|MCS1A_XENLA Malignant T-cell-amplified sequence 1-A OS=Xenopus laevis
GN=mcts1-a PE=2 SV=1
Length = 181
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 56/70 (80%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P T+V+IMAEGKQHAL +G+ +S DDI ++NKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAAADTVVAIMAEGKQHALCVGVMKMSADDIEKINKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>sp|Q5ZI42|MCTS1_CHICK Malignant T-cell-amplified sequence 1 OS=Gallus gallus GN=MCTS1
PE=2 SV=1
Length = 181
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 56/70 (80%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P T+V+IMAEGKQHAL +G+ +S DDI +VNKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAAVDTVVAIMAEGKQHALCVGVMKMSADDIEKVNKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>sp|Q7ZV34|MCTS1_DANRE Malignant T-cell-amplified sequence 1 OS=Danio rerio GN=mcts1 PE=2
SV=1
Length = 181
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 56/70 (80%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P + T+V+IMAEGKQHAL +G+ +S DDI +VN GIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAESDTVVAIMAEGKQHALCVGVMKMSADDIEKVNMGIGIENVHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>sp|Q9DB27|MCTS1_MOUSE Malignant T-cell-amplified sequence 1 OS=Mus musculus GN=Mcts1 PE=2
SV=1
Length = 181
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 56/70 (80%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P TIV+IMAEGKQHAL +G+ +S +DI +VNKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>sp|Q9ULC4|MCTS1_HUMAN Malignant T-cell-amplified sequence 1 OS=Homo sapiens GN=MCTS1 PE=1
SV=1
Length = 181
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 56/70 (80%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P TIV+IMAEGKQHAL +G+ +S +DI +VNKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>sp|Q2KIE4|MCTS1_BOVIN Malignant T-cell-amplified sequence 1 OS=Bos taurus GN=MCTS1 PE=2
SV=1
Length = 181
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 56/70 (80%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P TIV+IMAEGKQHAL +G+ +S +DI +VNKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>sp|Q4G009|MCTS1_RAT Malignant T-cell-amplified sequence 1 OS=Rattus norvegicus GN=Mcts1
PE=2 SV=1
Length = 182
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 56/70 (80%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P TIV+IMAEGKQHAL +G+ +S +DI +VNKGIG+EN HYLN
Sbjct: 113 MCPGLTSPGAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLN 172
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 173 DGLWHMKTYK 182
>sp|Q9CQ21|MCTS2_MOUSE Malignant T-cell-amplified sequence 2 OS=Mus musculus GN=Mcts2 PE=2
SV=1
Length = 181
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 54/70 (77%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + TIV++MAEGK+HAL +G+ ++ DI ++NKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYTAAVDTIVAVMAEGKEHALCVGVMKMAAADIEKINKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>sp|P89886|TMA20_YEAST Translation machinery-associated protein 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TMA20 PE=1
SV=1
Length = 181
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MCPGLTSPGAIITPV---DKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFH 57
MCPGLTS GA + P +KGTIV I AE K++ALAIG + T++I VNKG +E H
Sbjct: 110 MCPGLTSAGADLPPAPGYEKGTIVVINAENKENALAIGELMMGTEEIKSVNKGHSIELIH 169
Query: 58 YLNDGLWNM 66
+L D LWN
Sbjct: 170 HLGDPLWNF 178
>sp|Q75AA8|TMA20_ASHGO Translation machinery-associated protein 20 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=TMA20 PE=3 SV=1
Length = 181
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 1 MCPGLTSPGAIITP---VDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFH 57
MCPGLTS GA + + + +IV + AE K++ALAIG +ST+DI +NKG GVE H
Sbjct: 110 MCPGLTSSGAALPEAPGLAQDSIVVVNAENKENALAIGKLLMSTEDIKSINKGHGVETIH 169
Query: 58 YLNDGLWNM 66
+L D LWN
Sbjct: 170 HLGDCLWNF 178
>sp|P87313|TMA20_SCHPO Translation machinery-associated protein 20 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tma20 PE=3 SV=5
Length = 181
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 1 MCPGLTSPGA-IITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYL 59
M PGL S G + ++K V + AEGK+ AIGLT +S ++ NKGIG+EN HYL
Sbjct: 112 MIPGLVSKGGNLPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKEMKETNKGIGIENVHYL 171
Query: 60 NDGLWN 65
D LW
Sbjct: 172 GDNLWK 177
>sp|Q86KL4|MCTS1_DICDI Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium
discoideum GN=mcts1 PE=3 SV=1
Length = 182
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 5/73 (6%)
Query: 1 MCPGLTSPGAIIT---PVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFH 57
MC GLTSPGA + PVD IV++MAEGK HA AIG+ +ST+DI +N IG+ N H
Sbjct: 112 MCRGLTSPGAKMEVDLPVD--AIVAVMAEGKDHASAIGVMKMSTNDIRTINNDIGINNIH 169
Query: 58 YLNDGLWNMKNIK 70
YL D L+ N++
Sbjct: 170 YLGDSLYMSPNLE 182
>sp|P0CL18|EIF2D_RABIT Eukaryotic translation initiation factor 2D OS=Oryctolagus
cuniculus GN=EIF2D PE=1 SV=1
Length = 566
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVN-KGIGVENFHYL 59
M PGL P A + V KG + +I G + +AIG+ +ST++++ KG G H
Sbjct: 113 MLPGLVVPPAGLPQVQKGDLCAIALVGNRAPVAIGVAAMSTEEMLTSGLKGRGFSVLHTY 172
Query: 60 NDGLW 64
D LW
Sbjct: 173 QDHLW 177
>sp|Q5RA63|EIF2D_PONAB Eukaryotic translation initiation factor 2D OS=Pongo abelii
GN=EIF2D PE=2 SV=1
Length = 584
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVN-KGIGVENFHYL 59
M PGL P A + V KG + +I G + +AIG+ +ST +++ KG G H
Sbjct: 113 MLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTY 172
Query: 60 NDGLWNMKN 68
D LW N
Sbjct: 173 QDHLWRSGN 181
>sp|P41214|EIF2D_HUMAN Eukaryotic translation initiation factor 2D OS=Homo sapiens
GN=EIF2D PE=1 SV=3
Length = 584
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVN-KGIGVENFHYL 59
M PGL P A + V KG + +I G + +AIG+ +ST +++ KG G H
Sbjct: 113 MLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTY 172
Query: 60 NDGLWNMKN 68
D LW N
Sbjct: 173 QDHLWRSGN 181
>sp|Q58827|Y1432_METJA Uncharacterized protein MJ1432 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1432 PE=4 SV=1
Length = 162
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
M PG+ I D +V ++ E + + +G+ ++ ++ +KG ++N HY+
Sbjct: 98 MAPGIVDADENIKEED---VVFVVDENHKKPICVGIALMNGKEMKEADKGKAIKNLHYVG 154
Query: 61 DGLWNMK 67
D +WN K
Sbjct: 155 DKIWNFK 161
>sp|Q58CR3|EIF2D_BOVIN Eukaryotic translation initiation factor 2D OS=Bos taurus GN=EIF2D
PE=2 SV=1
Length = 579
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVN-KGIGVENFHYL 59
M PGL P A + V KG + ++ G + +A+G+ +ST +++ KG G H
Sbjct: 113 MLPGLVVPPAGLPQVQKGDLCAVALVGNRAPVAVGVAAMSTAEMLASGLKGRGFCVLHSY 172
Query: 60 NDGLW 64
D LW
Sbjct: 173 QDHLW 177
>sp|Q61211|EIF2D_MOUSE Eukaryotic translation initiation factor 2D OS=Mus musculus
GN=Eif2d PE=2 SV=3
Length = 570
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVN-KGIGVENFHYL 59
M PG+ P + V +G + +I G + +AIG+ +ST ++ KG GV H
Sbjct: 113 MLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAIGVAAMSTAQMLASGLKGKGVSVLHTY 172
Query: 60 NDGLW 64
D LW
Sbjct: 173 QDHLW 177
>sp|Q5PPG7|EIF2D_RAT Eukaryotic translation initiation factor 2D OS=Rattus norvegicus
GN=Eif2d PE=2 SV=1
Length = 570
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVN-KGIGVENFHYL 59
M PG+ P + V +G + +I G + +A+G+ +ST ++ KG G+ H
Sbjct: 113 MLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAVGVAAMSTAQMLASGLKGKGISVLHTY 172
Query: 60 NDGLW 64
D LW
Sbjct: 173 QDHLW 177
>sp|Q54727|NANB_STRPN Sialidase B OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=nanB PE=1 SV=2
Length = 697
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 8 PGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGI 51
P + I +DK T+ ++ EGK+H LA G S D+I NK I
Sbjct: 176 PISNINGIDKATLGAVNREGKEHYLAKG----SIDEISLFNKAI 215
>sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=truB PE=1 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 5 LTSPGAII--TPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVE 54
LT PG + + KG +V+IM K +A+G +ST +++ +KGI V+
Sbjct: 269 LTVPGIVKLNAGIKKGDLVAIMTL-KDELVALGKAMMSTQEMIERSKGIAVD 319
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,135,107
Number of Sequences: 539616
Number of extensions: 854347
Number of successful extensions: 2525
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2503
Number of HSP's gapped (non-prelim): 25
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)