RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15688
(70 letters)
>3r90_A Malignant T cell-amplified sequence 1; structural genomics
consortium, surface entropy reduction, S binding
protein; 1.70A {Homo sapiens}
Length = 188
Score = 91.2 bits (226), Expect = 3e-25
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
MCPGLTSPGA + P TIV+IMA G HAL +G+ +S +DI +VNKGIG+EN HYLN
Sbjct: 112 MCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLN 171
Query: 61 DGLWNMKNIK 70
DGLW+MK K
Sbjct: 172 DGLWHMKTYK 181
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown
function; 1.73A {Pyrococcus horikoshii}
Length = 179
Score = 84.9 bits (210), Expect = 5e-23
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
M PG+ + +G V ++ E LAIG+ +S + N+G V+ H+
Sbjct: 114 MAPGIVDADE---GIKEGDFVFVVEEKYGRPLAIGIALMSGKVMKEKNRGKAVKVIHHAR 170
Query: 61 DGLWNMK 67
D +W +
Sbjct: 171 DKIWEVT 177
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1
d.17.6.4 PDB: 2cx1_A* 1zs7_A
Length = 187
Score = 78.0 bits (192), Expect = 3e-20
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRV----NKGIGVENF 56
M PG+ +G +V+ + + + +G+ + + + ++ +G V
Sbjct: 112 MIPGVVGVEGSF---TRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGRAVRRV 168
Query: 57 HYLNDGLWNMK 67
H L D LW +
Sbjct: 169 HRLGDALWELA 179
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR
structure initiative; 2.10A {Thermoplasma acidophilum
dsm 1728} SCOP: b.122.1.1 d.17.6.2
Length = 153
Score = 74.8 bits (184), Expect = 3e-19
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
PG+ S I KG ++ + + K + +A+G+ + +++ +G H+
Sbjct: 90 FAPGIVSMDDSIR---KGDMIFVKSS-KGYFIAVGMAEMDAGEVMATKRGKAARIIHFPG 145
Query: 61 DGLWNM 66
D L
Sbjct: 146 DELIRA 151
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP
assembly, X-linked dyskeratosis congenita; 2.80A
{Saccharomyces cerevisiae}
Length = 195
Score = 39.2 bits (91), Expect = 2e-05
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVE 54
M PGL ++ + ++ K A+A+ + +ST D+ + G+
Sbjct: 95 MIPGLLR---YEEGIELYDEIVLI-TTKGEAIAVAIAQMSTVDLASCDHGVVAS 144
>2aus_C Pseudouridine synthase; isomerase, structural protein,
isomerase-structural protein; 2.10A {Pyrococcus abyssi}
PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A*
2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Length = 334
Score = 26.5 bits (59), Expect = 0.68
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGI 51
PG+ A + KG +V+IM K +A+G +ST +++ +KGI
Sbjct: 270 TVPGIVKLNA---GIKKGDLVAIMTL-KDELVALGKAMMSTQEMIERSKGI 316
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex,
box H/ACA, snoRNP, pseudouridine synthase, RNA
modification; 1.95A {Methanocaldococcus jannaschii}
SCOP: b.122.1.1 d.265.1.2
Length = 357
Score = 25.4 bits (56), Expect = 1.6
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGI 51
G+ + KG V + K A+A+G ++T +I+ +KG+
Sbjct: 289 YVRGIAKLSK---GIGKGETVLVETL-KGEAVAVGKALMNTKEILNADKGV 335
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha
barrel, ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 24.6 bits (53), Expect = 2.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 14 PVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGV 53
P+DK IV+ MA+ A A+ + +++ V + V
Sbjct: 31 PMDKPEIVAAMAQAAASAGAVAVRIEGIENLRTVRPHLSV 70
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics,
PSI-2, protein structure initiative; 2.04A
{Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1
c.18.1.4 d.17.6.5
Length = 306
Score = 24.8 bits (53), Expect = 2.8
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 1 MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVE 54
G+ I P D +V + + +GL +S ++ KGI +
Sbjct: 245 FAGGVLRADEKIRPND---VV-VFHNSR--IFGVGLAAMSGKEMAGSEKGIAIN 292
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 24.3 bits (53), Expect = 4.2
Identities = 9/52 (17%), Positives = 22/52 (42%)
Query: 7 SPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHY 58
P I + + ++ G Q +++ G+ D R ++ +E+ H+
Sbjct: 420 VPTRIKNTATQDHNIILVGCGGQFSVSGGVKLSDEDAEKRADEMDDLEHHHH 471
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.412
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,080,834
Number of extensions: 52763
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 12
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)