RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15688
         (70 letters)



>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525,
          C-terminal domain {Archaeon Aeropyrum pernix [TaxId:
          56636]}
          Length = 93

 Score = 57.2 bits (138), Expect = 2e-13
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 1  MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRV----NKGIGVENF 56
          M PG+     +     +G +V+ +    +  + +G+  + +  + ++     +G  V   
Sbjct: 21 MIPGVVG---VEGSFTRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGRAVRRV 77

Query: 57 HYLNDGLWNMK 67
          H L D LW + 
Sbjct: 78 HRLGDALWELA 88


>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423,
          C-terminal domain {Archaeon Thermoplasma acidophilum
          [TaxId: 2303]}
          Length = 85

 Score = 52.1 bits (125), Expect = 1e-11
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 1  MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYLN 60
            PG+ S    I    KG ++ + +  K + +A+G+  +   +++   +G      H+  
Sbjct: 22 FAPGIVSMDDSI---RKGDMIFVKSS-KGYFIAVGMAEMDAGEVMATKRGKAARIIHFPG 77

Query: 61 DGLWNM 66
          D L   
Sbjct: 78 DELIRA 83


>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB,
          C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 81

 Score = 40.1 bits (94), Expect = 7e-07
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)

Query: 1  MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFHYL 59
              L           KG +V +  E +   LA+     ++  +  + K    E    L
Sbjct: 21 HLEMLKE----WDGFKKGEVVRVFNE-EGRLLALAEAERNSSFLETLRKHERNERVLTL 74


>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB,
          C-terminal domain {Archaeon Methanococcus jannaschii
          [TaxId: 2190]}
          Length = 85

 Score = 38.6 bits (90), Expect = 3e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1  MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVENFH 57
             G+     +   + KG  V +    K  A+A+G   ++T +I+  +KG+ V+   
Sbjct: 22 YVRGIAK---LSKGIGKGETVLVETL-KGEAVAVGKALMNTKEILNADKGVAVDVER 74


>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine
          transglycosylase, C3 domain {Archaeon Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 77

 Score = 36.7 bits (85), Expect = 1e-05
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 1  MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVE 54
              +         +     V ++ E     LA G   LS  +++    G  V+
Sbjct: 22 FAKFVIF---ADPGIRPYDEVLVVNE-NDELLATGQALLSGREMIVFQYGRAVK 71


>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB,
          C-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
          2261]}
          Length = 84

 Score = 34.7 bits (80), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 1  MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVE 54
            PG+     +   + +G +V+IM   K   +A+G   +++ +++   KGI V+
Sbjct: 21 AVPGIAK---LHAGIKRGDLVAIMTL-KDELVALGKAMMTSQEMLEKTKGIAVD 70


>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 68

 Score = 28.1 bits (63), Expect = 0.029
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 6/54 (11%)

Query: 1  MCPGLTSPGAIITPVDKGTIVSIMAEGKQHALAIGLTTLSTDDIVRVNKGIGVE 54
             G+      I P     +V            +GL  +S  ++    KGI + 
Sbjct: 15 FAGGVLRADEKIRP---NDVVVFHNSR---IFGVGLAAMSGKEMAGSEKGIAIN 62


>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL)
           {Caenorhabditis elegans [TaxId: 6239]}
          Length = 161

 Score = 23.2 bits (50), Expect = 3.3
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 12/71 (16%)

Query: 4   GLTSPGAIITPVDKGTIVSIMAEGKQ-----HALAIGL-------TTLSTDDIVRVNKGI 51
           G+  P   I  VDK  ++   +  ++     H  A  +         LS D I++     
Sbjct: 83  GIALPRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMIDNELVYLCLSHDKIIQHQATA 142

Query: 52  GVENFHYLNDG 62
             E+ H +NDG
Sbjct: 143 INEHRHQINDG 153


>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 324

 Score = 23.0 bits (49), Expect = 4.6
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 30  HALAIGLTTLSTDDIVRVNKGIGVENFHYLNDGLWNM 66
           H        ++ DDI ++ +     +   + D LW+ 
Sbjct: 177 HGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSD 213


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 257,289
Number of extensions: 8869
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 11
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)