BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15689
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24134|NELFD_DROME Negative elongation factor D OS=Drosophila melanogaster GN=TH1 PE=1
SV=2
Length = 578
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/278 (76%), Positives = 242/278 (87%), Gaps = 4/278 (1%)
Query: 22 SDGGDDPME----NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQ 77
+ G +P E NPQ+ + ECLEKF TPDYIMEPGIF+QLKRYFQ+GG+PE+VI +LS+
Sbjct: 14 AKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISMLSE 73
Query: 78 NYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAW 137
NYKAVAQMANL+AEWLIL GV VTEVQAMVENHLK+MILK+FDPKKADTIFTEEGETP W
Sbjct: 74 NYKAVAQMANLLAEWLILAGVKVTEVQAMVENHLKEMILKSFDPKKADTIFTEEGETPDW 133
Query: 138 LTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVL 197
LTEMI+H TWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ EITSISTAAQQIEVFSRVL
Sbjct: 134 LTEMIDHYTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVL 193
Query: 198 KTSISNFLESSDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEIT 257
KTSI FL + DD +++ECA+MVCHGQHTYVYSQVL+QVLS E KGG +KRL+QEI
Sbjct: 194 KTSIVKFLNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQEII 253
Query: 258 KCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
K A Q+ +VTPI MALNG+A YPQA QAL+SM++RN+
Sbjct: 254 KYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNT 291
>sp|Q922L6|NELFD_MOUSE Negative elongation factor D OS=Mus musculus GN=Th1l PE=2 SV=2
Length = 591
Score = 355 bits (910), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 219/282 (77%), Gaps = 7/282 (2%)
Query: 21 DSDGG----DDPME--NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIEL 74
++DGG DD E + EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+L
Sbjct: 24 EADGGQHQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQL 83
Query: 75 LSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGET 134
LS+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGET
Sbjct: 84 LSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGET 143
Query: 135 PAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFS 194
PAWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFS
Sbjct: 144 PAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFS 203
Query: 195 RVLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLA 253
RVL+TS++ L+ ++ + ++ E AKMVCHG+HTY+++Q ++ VL+ E +GGS V+R+A
Sbjct: 204 RVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRVA 263
Query: 254 QEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
QE+ + AQ+ GHD + I +AL AA YP+A QAL +M+SR +
Sbjct: 264 QEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSRGA 305
>sp|Q5RFA0|NELFD_PONAB Negative elongation factor D OS=Pongo abelii GN=TH1L PE=2 SV=1
Length = 590
Score = 354 bits (909), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/281 (60%), Positives = 219/281 (77%), Gaps = 6/281 (2%)
Query: 21 DSDGG---DDPME--NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELL 75
++DGG DD E + EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LL
Sbjct: 24 EADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 83
Query: 76 SQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETP 135
S+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETP
Sbjct: 84 SENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETP 143
Query: 136 AWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSR 195
AWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSR
Sbjct: 144 AWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSR 203
Query: 196 VLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQ 254
VL+TS++ L+ ++ + ++ E AKMVCHG+HTY+++Q ++ VL+ E +GGS V+R+AQ
Sbjct: 204 VLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQ 263
Query: 255 EITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
E+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+ +
Sbjct: 264 EVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGA 304
>sp|Q8IXH7|NELFD_HUMAN Negative elongation factor C/D OS=Homo sapiens GN=TH1L PE=1 SV=2
Length = 590
Score = 354 bits (909), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/281 (60%), Positives = 219/281 (77%), Gaps = 6/281 (2%)
Query: 21 DSDGG---DDPME--NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELL 75
++DGG DD E + EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LL
Sbjct: 24 EADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 83
Query: 76 SQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETP 135
S+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETP
Sbjct: 84 SENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETP 143
Query: 136 AWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSR 195
AWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSR
Sbjct: 144 AWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSR 203
Query: 196 VLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQ 254
VL+TS++ L+ ++ + ++ E AKMVCHG+HTY+++Q ++ VL+ E +GGS V+R+AQ
Sbjct: 204 VLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQ 263
Query: 255 EITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
E+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+ +
Sbjct: 264 EVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGA 304
>sp|A5GFY4|NELFD_PIG Negative elongation factor D OS=Sus scrofa GN=TH1L PE=2 SV=1
Length = 590
Score = 353 bits (906), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 169/281 (60%), Positives = 218/281 (77%), Gaps = 6/281 (2%)
Query: 21 DSDGG---DD--PMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELL 75
++DGG DD E+ EV ECL KFST DYIMEP IF+ LKRYFQAGG+PE VI+LL
Sbjct: 24 EADGGQQEDDYGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLL 83
Query: 76 SQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETP 135
S+NY AVAQ NL+AEWLI GV +VQ VENHLK +++K FDP+KAD+IFTEEGETP
Sbjct: 84 SENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETP 143
Query: 136 AWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSR 195
AWL +MI H TWR L Y+LAE +PDCLMLNFT+KLISDAG+Q EITS+STA QQ+EVFSR
Sbjct: 144 AWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSR 203
Query: 196 VLKTSISNFLESS-DDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQ 254
VL+TS++ L+ ++ + + E AKMVCHG+HTY+++Q ++ VL+ E +GGS V+R+AQ
Sbjct: 204 VLRTSLATILDGGEENLEKHLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRVAQ 263
Query: 255 EITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295
E+ + AQ+ GHD + I +AL AA YP+A QAL +M+S+ +
Sbjct: 264 EVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGA 304
>sp|Q7NQ65|GSHB_CHRVO Glutathione synthetase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=gshB PE=3 SV=1
Length = 314
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 81 AVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTE 140
A+ L++ LI G + ++A V H +D+ILK D D+IF + + P L+
Sbjct: 126 AILHFPELISPTLISGEAH--RLRAFVNQH-QDVILKPLDSMGGDSIFRVKPDDPN-LSV 181
Query: 141 MIEHPTWRSLIYRLAEEY 158
+IE TWR +A+ Y
Sbjct: 182 IIETITWRGKRTVMAQRY 199
>sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subunit alpha, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 580
Score = 35.0 bits (79), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 96 GGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAW------LTEMIEHPTWRS 149
GGV V +V A E L+D L+ D K A EEG P L+E++ P ++
Sbjct: 407 GGVAVIKVGAATEAELEDRKLRIEDAKNATFAAVEEGIVPGGGAALLHLSELV--PAFKE 464
Query: 150 LIYRLAEEY-PDCLM--LNFTIKLISD-AGFQREITSISTAAQQIEVFSRVLKTSISNFL 205
+ E+ D +M L +LI+D AG + E+ + EV + + N L
Sbjct: 465 TLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLL 524
Query: 206 ESS 208
++
Sbjct: 525 DAG 527
>sp|P47150|RT07_YEAST 37S ribosomal protein S7, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RSM7 PE=1 SV=1
Length = 247
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 34 EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQV-IELL--SQNYKAVAQMANLVA 90
E +NE E+FS +Y+ E + P Q ++LL SQ + A +A
Sbjct: 48 EAINELREEFSAKEYLPETSL-----------APPGQSKVDLLQGSQAGSKIKPTAEQLA 96
Query: 91 EWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTE 130
+W L V + + +H+ +MI++ +KA TI +
Sbjct: 97 QWEALKSVPIPPRKNATLDHITNMIMRHGKKEKAQTILSR 136
>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic
OS=Pisum sativum PE=1 SV=2
Length = 587
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 8/132 (6%)
Query: 96 GGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLA 155
GGV V +V A E L+D L+ D K A EEG P T ++ + I
Sbjct: 419 GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKL 478
Query: 156 EEYPDCLMLNFTIK-------LIS-DAGFQREITSISTAAQQIEVFSRVLKTSISNFLES 207
E+ + L + K LI+ +AG + E+ + EV + + N +ES
Sbjct: 479 EDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVES 538
Query: 208 SDDWQSSVEECA 219
+ V CA
Sbjct: 539 GVIDPAKVTRCA 550
>sp|Q119S1|CH601_TRIEI 60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101)
GN=groL1 PE=3 SV=1
Length = 561
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%)
Query: 96 GGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPT 146
GGV V +V A E LKD L+ D A EEG P T +I T
Sbjct: 372 GGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLST 422
>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit alpha, chloroplastic
(Fragment) OS=Triticum aestivum PE=1 SV=1
Length = 543
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 96 GGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLA 155
GGV V +V A E L+D L+ D K A EEG P + T+ I
Sbjct: 374 GGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETI 433
Query: 156 EEYPDCLMLNFTIK--------LISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES 207
E++ + L + K + ++AG + E+ + E+ + N +ES
Sbjct: 434 EDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIES 493
Query: 208 SDDWQSSVEECA 219
+ V CA
Sbjct: 494 GVIDPAKVTRCA 505
>sp|Q5M8L3|GKAP1_XENTR G kinase-anchoring protein 1 OS=Xenopus tropicalis GN=gkap1 PE=2
SV=1
Length = 363
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLV 89
E +E ++ E FSTPDY MEP + G E + + + + + QM +++
Sbjct: 223 EKRKEHSSDVTESFSTPDYSMEPAL---------KDGKTEVLKQEIEKKEAELKQMKSII 273
Query: 90 AEW 92
++W
Sbjct: 274 SQW 276
>sp|P14360|V240_FOWPN Putative ankyrin repeat protein FPV240 OS=Fowlpox virus (strain
NVSL) GN=FPV240 PE=4 SV=1
Length = 410
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 100 VTEVQAMVENHLKDMILKTFDPKKAD-----TIFTEEGETPAWLTEMIEHPTWRSLIYRL 154
VT + ++N+ DM+ F + AD T+ EE T + M +P S+ +
Sbjct: 202 VTAMCYAIQNNKIDMV-SMFLKRGADSNIVFTVMNEEHTTLEMICNMDTNPESESVDMLI 260
Query: 155 AEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSR 195
A D + +T + SD GF R +T I++ ++ +VF +
Sbjct: 261 A----DIALRQYTNTISSDKGFSRNMTVINSKSRLKDVFEK 297
>sp|P08824|RUBA_RICCO RuBisCO large subunit-binding protein subunit alpha (Fragment)
OS=Ricinus communis PE=2 SV=1
Length = 495
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 8/132 (6%)
Query: 96 GGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIY--- 152
GGV V +V A E L+D L+ D K A EEG P ++ T I
Sbjct: 361 GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGED 420
Query: 153 -----RLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES 207
RL + ++ + +AG + E+ A++ E+ + N +E+
Sbjct: 421 KDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEA 480
Query: 208 SDDWQSSVEECA 219
+ V CA
Sbjct: 481 GVIDPAKVTRCA 492
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,992,329
Number of Sequences: 539616
Number of extensions: 3972908
Number of successful extensions: 13580
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 13567
Number of HSP's gapped (non-prelim): 26
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)