Query psy15689
Match_columns 295
No_of_seqs 55 out of 57
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 18:57:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04858 TH1: TH1 protein; In 100.0 9E-102 2E-106 780.7 31.8 293 1-295 1-298 (584)
2 PF14863 Alkyl_sulf_dimr: Alky 71.3 25 0.00054 30.5 7.9 62 56-117 58-120 (141)
3 KOG1810|consensus 66.0 28 0.00062 40.1 8.8 98 113-241 71-182 (1417)
4 TIGR03687 pupylate_cterm ubiqu 57.4 5.1 0.00011 27.2 0.8 22 45-66 11-32 (33)
5 PHA01351 putative minor struct 57.2 3.2E+02 0.0069 30.5 17.7 197 50-294 492-735 (1070)
6 PRK05225 ketol-acid reductoiso 53.0 2.8E+02 0.0061 29.1 12.7 74 168-252 372-447 (487)
7 PF10397 ADSL_C: Adenylosuccin 51.7 19 0.00042 27.7 3.3 44 227-270 1-44 (81)
8 PF14659 Phage_int_SAM_3: Phag 51.5 50 0.0011 22.6 5.2 54 86-142 3-58 (58)
9 PF10508 Proteasom_PSMB: Prote 51.2 2.9E+02 0.0063 28.3 17.0 172 34-239 60-248 (503)
10 PRK11880 pyrroline-5-carboxyla 50.3 1.3E+02 0.0028 27.3 9.0 102 51-153 137-252 (267)
11 PF04282 DUF438: Family of unk 48.3 91 0.002 24.4 6.6 48 62-110 9-58 (71)
12 PRK07531 bifunctional 3-hydrox 47.3 50 0.0011 33.6 6.4 91 52-143 159-273 (495)
13 PF05402 PqqD: Coenzyme PQQ sy 46.8 92 0.002 22.5 6.2 52 49-118 14-65 (68)
14 PF12926 MOZART2: Mitotic-spin 46.3 33 0.00072 28.0 4.0 40 38-77 29-68 (88)
15 PF02847 MA3: MA3 domain; Int 46.2 1.1E+02 0.0024 24.0 7.1 65 53-119 4-68 (113)
16 PF04546 Sigma70_ner: Sigma-70 43.4 17 0.00037 32.8 2.2 49 108-156 147-198 (211)
17 PF10136 SpecificRecomb: Site- 41.4 5E+02 0.011 28.2 13.7 149 54-207 9-203 (643)
18 PF08708 PriCT_1: Primase C te 41.1 1.4E+02 0.0031 22.0 6.5 54 53-113 15-68 (71)
19 PF05639 Pup: Pup-like protein 41.1 11 0.00023 29.6 0.4 25 42-66 44-68 (69)
20 COG3512 CRISPR-associated prot 40.3 36 0.00079 28.8 3.4 19 170-198 33-51 (116)
21 PRK14949 DNA polymerase III su 38.3 6E+02 0.013 28.9 13.2 28 46-75 194-221 (944)
22 PF15601 Imm42: Immunity prote 38.3 1.5E+02 0.0032 25.9 7.0 70 53-137 20-90 (134)
23 cd06224 REM Guanine nucleotide 38.2 2E+02 0.0043 22.6 7.9 63 38-100 4-85 (122)
24 cd08316 Death_FAS_TNFRSF6 Deat 38.2 1.5E+02 0.0033 24.2 6.7 56 56-113 21-78 (97)
25 PLN02688 pyrroline-5-carboxyla 37.3 1.7E+02 0.0038 26.4 7.8 70 83-153 177-251 (266)
26 PRK07994 DNA polymerase III su 37.1 5.7E+02 0.012 27.6 12.7 35 133-167 263-298 (647)
27 smart00528 HNS Domain in histo 34.1 27 0.00059 25.0 1.6 26 119-144 12-37 (46)
28 COG2733 Predicted membrane pro 34.0 5.5E+02 0.012 26.5 15.9 112 54-171 83-229 (415)
29 TIGR01398 FlhA flagellar biosy 33.8 1E+02 0.0023 33.4 6.5 105 52-166 539-663 (678)
30 PF13543 KSR1-SAM: SAM like do 33.1 76 0.0016 27.5 4.4 44 87-132 67-112 (129)
31 cd01840 SGNH_hydrolase_yrhL_li 32.9 55 0.0012 27.2 3.5 52 108-167 66-117 (150)
32 TIGR02687 conserved hypothetic 32.6 4.8E+02 0.01 29.0 11.4 113 86-207 92-225 (844)
33 TIGR01120 rpiB ribose 5-phosph 32.3 53 0.0011 28.7 3.4 45 250-294 11-55 (143)
34 PRK07764 DNA polymerase III su 32.2 4.7E+02 0.01 29.0 11.2 27 136-162 268-295 (824)
35 PRK14136 recX recombination re 32.2 4.7E+02 0.01 25.9 10.2 125 31-180 160-294 (309)
36 PRK14961 DNA polymerase III su 32.1 4.8E+02 0.01 25.3 10.4 24 50-75 198-221 (363)
37 COG3951 Rod binding protein [C 32.0 1.1E+02 0.0024 27.7 5.3 69 181-260 29-102 (166)
38 COG3851 UhpB Signal transducti 31.1 4.2E+02 0.0091 27.5 9.8 137 147-289 184-343 (497)
39 PF12169 DNA_pol3_gamma3: DNA 30.6 74 0.0016 26.1 3.9 49 97-159 44-92 (143)
40 cd00159 RhoGAP RhoGAP: GTPase- 30.3 14 0.00031 30.6 -0.5 28 35-70 3-30 (169)
41 COG2971 Predicted N-acetylgluc 30.1 5.1E+02 0.011 25.6 10.0 126 33-170 159-288 (301)
42 PTZ00431 pyrroline carboxylate 29.8 2.4E+02 0.0051 26.0 7.4 70 83-153 173-247 (260)
43 PRK10328 DNA binding protein, 29.2 35 0.00075 29.6 1.7 56 88-143 60-124 (134)
44 PF14842 FliG_N: FliG N-termin 28.6 66 0.0014 26.2 3.2 23 109-131 76-98 (108)
45 PF09862 DUF2089: Protein of u 27.9 1.8E+02 0.004 24.6 5.8 76 50-125 34-109 (113)
46 PRK10947 global DNA-binding tr 27.6 38 0.00082 29.4 1.7 58 86-143 58-124 (135)
47 PF12637 TSCPD: TSCPD domain; 27.5 80 0.0017 25.3 3.4 31 54-84 43-73 (95)
48 PF04914 DltD_C: DltD C-termin 27.4 55 0.0012 28.1 2.6 58 90-152 61-118 (130)
49 TIGR01399 hrcV type III secret 26.9 65 0.0014 34.9 3.6 26 141-166 636-662 (677)
50 KOG1991|consensus 26.9 1.1E+02 0.0024 34.6 5.3 36 51-86 957-997 (1010)
51 COG3747 Phage terminase, small 26.7 84 0.0018 28.2 3.7 52 133-200 39-90 (160)
52 PF08673 RsbU_N: Phosphoserine 26.5 3.2E+02 0.0069 21.5 6.7 42 55-112 5-46 (77)
53 cd05024 S-100A10 S-100A10: A s 26.0 98 0.0021 25.2 3.7 34 97-130 23-56 (91)
54 PRK08621 galactose-6-phosphate 25.6 83 0.0018 27.6 3.4 41 251-293 13-53 (142)
55 KOG3861|consensus 25.3 16 0.00036 36.5 -1.1 69 51-151 66-145 (438)
56 cd00026 BPI2 BPI/LBP/CETP C-te 25.3 64 0.0014 28.8 2.8 53 108-163 8-60 (200)
57 PRK00855 argininosuccinate lya 25.1 3.7E+02 0.008 27.2 8.4 46 227-272 364-409 (459)
58 smart00299 CLH Clathrin heavy 24.3 3.8E+02 0.0083 21.6 9.1 12 117-128 68-79 (140)
59 PF08532 Glyco_hydro_42M: Beta 24.3 36 0.00078 30.3 1.0 20 48-67 67-86 (207)
60 PRK14969 DNA polymerase III su 24.2 6.9E+02 0.015 25.9 10.3 33 134-166 264-297 (527)
61 PRK08561 rps15p 30S ribosomal 24.1 52 0.0011 29.3 1.9 45 250-294 27-78 (151)
62 PF05139 Erythro_esteras: Eryt 24.1 53 0.0012 31.2 2.1 48 49-97 3-54 (346)
63 COG1656 Uncharacterized conser 23.9 1.1E+02 0.0024 27.6 4.0 88 82-173 11-112 (165)
64 PF03819 MazG: MazG nucleotide 23.7 3.1E+02 0.0067 20.5 5.9 46 66-117 24-69 (74)
65 PF02403 Seryl_tRNA_N: Seryl-t 23.7 2.5E+02 0.0055 22.3 5.7 43 133-175 23-66 (108)
66 COG2916 Hns DNA-binding protei 23.6 35 0.00075 29.6 0.7 28 117-144 91-118 (128)
67 PF10397 ADSL_C: Adenylosuccin 23.6 1.4E+02 0.0031 22.8 4.1 44 88-131 8-67 (81)
68 PRK14962 DNA polymerase III su 23.4 8.2E+02 0.018 25.1 13.0 98 52-158 179-291 (472)
69 PRK12708 flgJ peptidoglycan hy 23.4 2.7E+02 0.0059 24.4 6.1 90 180-270 25-129 (134)
70 PRK12720 secretion system appa 23.2 1.5E+02 0.0033 32.2 5.5 105 52-166 534-654 (675)
71 PF03097 BRO1: BRO1-like domai 23.0 6.8E+02 0.015 24.0 12.0 180 52-257 13-203 (377)
72 cd06845 Bcl-2_like Apoptosis r 22.9 4.6E+02 0.0099 22.0 8.4 73 36-118 54-135 (144)
73 PF04388 Hamartin: Hamartin pr 22.5 7.8E+02 0.017 26.5 10.6 63 133-198 98-162 (668)
74 TIGR03015 pepcterm_ATPase puta 22.5 98 0.0021 27.7 3.4 57 84-140 178-237 (269)
75 PRK07679 pyrroline-5-carboxyla 22.4 4E+02 0.0086 24.6 7.5 31 82-112 181-211 (279)
76 TIGR01118 lacA galactose-6-pho 22.4 1.1E+02 0.0023 26.9 3.5 42 250-293 12-53 (141)
77 COG0191 Fba Fructose/tagatose 22.2 1.6E+02 0.0034 28.8 4.9 18 50-67 191-213 (286)
78 PF04286 DUF445: Protein of un 22.0 6.5E+02 0.014 23.4 14.5 113 50-181 65-200 (367)
79 KOG1684|consensus 21.8 2.2E+02 0.0047 29.1 5.9 60 29-94 237-299 (401)
80 PRK04833 argininosuccinate lya 21.5 5.4E+02 0.012 26.2 8.8 44 227-270 362-405 (455)
81 PRK15337 type III secretion sy 21.3 1.7E+02 0.0037 31.9 5.4 26 141-166 645-671 (686)
82 PF10188 Oscp1: Organic solute 21.2 1.2E+02 0.0026 27.6 3.6 52 93-156 9-60 (173)
83 PF05183 RdRP: RNA dependent R 21.2 1.9E+02 0.0042 29.8 5.6 65 92-156 241-315 (579)
84 PF13556 HTH_30: PucR C-termin 20.9 3.3E+02 0.0071 19.6 5.9 46 55-103 2-47 (59)
85 PRK06012 flhA flagellar biosyn 20.9 2.3E+02 0.005 30.8 6.3 105 52-166 555-679 (697)
86 PRK12613 galactose-6-phosphate 20.8 1.1E+02 0.0024 26.7 3.3 41 250-293 12-52 (141)
87 PRK12792 flhA flagellar biosyn 20.8 78 0.0017 34.4 2.8 27 141-167 652-679 (694)
88 PF00627 UBA: UBA/TS-N domain; 20.6 1.3E+02 0.0029 19.6 3.0 20 56-75 18-37 (37)
89 TIGR00112 proC pyrroline-5-car 20.1 5.7E+02 0.012 23.3 8.0 30 83-112 160-189 (245)
No 1
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=8.8e-102 Score=780.67 Aligned_cols=293 Identities=60% Similarity=0.999 Sum_probs=279.4
Q ss_pred CCCccccccccCCCCcCCC----CCCCCCCCCCCChHHHHHHHHHhcCCCCccccccHHHHHHHHHHcCCChHHHHHHHh
Q psy15689 1 MNDDYDDEQTHRWDQDMVD----VDSDGGDDPMENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLS 76 (295)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~~~~~~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~Pe~vV~~Ls 76 (295)
|++||++.+ +|+...+. +++++.++.+++++.++++|+++|++|||||||+|+++||+||++||+|++||++||
T Consensus 1 ~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~Imep~i~~~i~~y~~~gG~p~~vv~~Ls 78 (584)
T PF04858_consen 1 MEEDYEGDR--GWESSDGEGDDQEDDEEESEADEEPEEVLEECLRRLSQPDAIMEPSIFDTIKRYFRAGGDPEEVVELLS 78 (584)
T ss_pred CCchhhhcc--ccccccCCCCcccCccccccCCCChHHHHHHHHHhcCCCCeeeCchHHHHHHHHHHCCCCHHHHHHHHH
Confidence 899999655 69532222 344455555789999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHH
Q psy15689 77 QNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAE 156 (295)
Q Consensus 77 ~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE 156 (295)
+||+|||||||||++||+++|+++++||+++++|||++|+|||||+|||+|||++|++|+||++||+||+||+|||+|||
T Consensus 79 ~~Y~g~aq~~~ll~~WL~~~~~~~~~v~~~~~~~lk~~i~~~FD~~k~D~ift~~~~~p~WL~~mi~~~~WR~liy~Lae 158 (584)
T PF04858_consen 79 ENYRGYAQMCNLLAEWLIDLGVSPEDVQEIVESHLKELIKKRFDPKKADTIFTEEGSTPAWLDEMIEHPRWRSLIYELAE 158 (584)
T ss_pred HhcccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHhcCCCCChHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccchHHHHHHHhhcchhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHhhhccchhHHHHHHH
Q psy15689 157 EYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLES-SDDWQSSVEECAKMVCHGQHTYVYSQVL 235 (295)
Q Consensus 157 ~~p~cl~LnfaIk~IsdaG~q~EI~sv~taa~~~eVF~rvL~~~l~~~~~~-~d~~~~~~~el~km~C~sehTYlyaQ~l 235 (295)
+||||+|||||||+|||||||+||+||+|||+||+||+|||+++|.+++.. +|++++++++|+||||||+|||||||++
T Consensus 159 ~~p~~l~L~faik~IsdaG~~~Ei~s~~taa~~~~VF~~vl~~~i~~~~~~~~d~~~~~~~~l~k~~C~sehTYlyaQ~l 238 (584)
T PF04858_consen 159 RHPDCLFLNFAIKLISDAGYQHEITSVSTAAQQFEVFSRVLKDSISRFLAAGEDELQEAIAELKKMCCHSEHTYLYAQAL 238 (584)
T ss_pred HCCCCHHHHHHHHHHHHcchHHHHHhHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985 8899999999999999999999999999
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHHhcCCCcchhHhhhcCCCCchhHHHHHHHHhccCC
Q psy15689 236 LQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRNS 295 (295)
Q Consensus 236 L~~L~~~~~g~~~~~rlsqele~~A~~~g~~v~~i~~~L~~~~~yp~~~~a~~sml~~~~ 295 (295)
|+.|+|+++|++.++|||||||++|+++|++|++|+++|||+++||.+|+||++|||+|+
T Consensus 239 L~~L~~~~~~~~~~~rlsqELe~~A~~~~~~vt~i~~aL~~s~~~p~a~~ai~smLs~~~ 298 (584)
T PF04858_consen 239 LHELSQESDGGSAMRRLSQELEREAAKRGHDVTDITLALNGSSSYPEACQAIASMLSSNA 298 (584)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHhcCccCchHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 2
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.31 E-value=25 Score=30.52 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCChHHHHHHHhhhh-hhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHh
Q psy15689 56 SQLKRYFQAGGNPEQVIELLSQNY-KAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILK 117 (295)
Q Consensus 56 ~~ik~Y~~~GG~Pe~vV~~Ls~~Y-~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li~k 117 (295)
+.=++|+..-|.+..|++..-+.+ .|-.|.|--|.+||..++.+..+.+.+.-+.++++-.+
T Consensus 58 ~~A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999988 89999999999999999999999988877777766543
No 3
>KOG1810|consensus
Probab=66.03 E-value=28 Score=40.09 Aligned_cols=98 Identities=26% Similarity=0.427 Sum_probs=57.3
Q ss_pred HHHHhhCCcchhhhhhccCCCCcHHHHH---HhcChhhHHHHHHHHHhCCCccchHHHHHHHhhcchhhhhhhhhhHHhH
Q psy15689 113 DMILKTFDPKKADTIFTEEGETPAWLTE---MIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQ 189 (295)
Q Consensus 113 ~li~k~FDp~kaD~ift~~g~~p~WL~~---MI~~~~WR~Liy~LaE~~p~cl~LnfaIk~IsdaG~q~EI~sv~taa~~ 189 (295)
..++..|+|.|-| |+|++. =++-.+||+.+|.++.. ++-+|- +.+--|-.
T Consensus 71 ~cl~~i~~~~~~d---------~~~~~~~~etl~~s~~~n~~~~~~~k-------------~~~~gl----a~l~~~lk- 123 (1417)
T KOG1810|consen 71 ACLLRIFAPLKTD---------PEWADICDETLELSTRRNELFLYVQK-------------FLASGL----ADLQVALK- 123 (1417)
T ss_pred HHHHHHhhhhhcC---------HHHHHHHHHHHhHHHHHHHHHHHHHH-------------HHhcch----HHHHHHHH-
Confidence 3344488888887 888864 45667999999998876 444444 22211222
Q ss_pred HHHHHHHHHHH--------HHHhhcCchhHHH---HHHHHHHhhhccchhHHHHHHHHHHHhc
Q psy15689 190 IEVFSRVLKTS--------ISNFLESSDDWQS---SVEECAKMVCHGQHTYVYSQVLLQVLSL 241 (295)
Q Consensus 190 ~eVF~rvL~~~--------l~~~~~~~d~~~~---~~~el~km~C~sehTYlyaQ~lL~~L~~ 241 (295)
.+|++++..- |+.++- ++.. .++...|++|...|-..|...+=..++.
T Consensus 124 -D~FsK~l~~~~i~~~~~di~dlLl---d~~~~v~e~~~~~kvv~~~i~l~~~~~~~~~~~a~ 182 (1417)
T KOG1810|consen 124 -DRFSKVLRYYDIPWPVRDIKDLLL---DRIVAVLELDSTLKVVFYLIHLLSYSKGLYEMHAH 182 (1417)
T ss_pred -HHHHHHHHHhcCCCcHHHHHHHHH---HHHHHHHhchhHHHHHHHHHHHHhhccccchHhhc
Confidence 2788776432 222221 1122 2346668999888877766544444433
No 4
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=57.42 E-value=5.1 Score=27.19 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.4
Q ss_pred CCCccccccHHHHHHHHHHcCC
Q psy15689 45 TPDYIMEPGIFSQLKRYFQAGG 66 (295)
Q Consensus 45 ~~DaIMEp~i~~~ik~Y~~~GG 66 (295)
.-|-++|.+.-.-++.|+|.||
T Consensus 11 eId~vLe~NAe~FV~~fVQKGG 32 (33)
T TIGR03687 11 EIDGVLESNAEEFVRGFVQKGG 32 (33)
T ss_pred HHHHHHHHhHHHHHHHHHHccC
Confidence 3467889999999999999999
No 5
>PHA01351 putative minor structural protein
Probab=57.22 E-value=3.2e+02 Score=30.54 Aligned_cols=197 Identities=18% Similarity=0.240 Sum_probs=111.2
Q ss_pred ccccHHHH--HHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHH-----------------HHhhCCCHHHHHHHHH--
Q psy15689 50 MEPGIFSQ--LKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEW-----------------LILGGVNVTEVQAMVE-- 108 (295)
Q Consensus 50 MEp~i~~~--ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~W-----------------L~~~g~~~~ev~~~~e-- 108 (295)
..-|++++ +++-+++-|=-..+++.+.+.|.-++||-+-+..- |+.+|.++.-+++++.
T Consensus 492 ~skGi~DqkkIke~LKa~gfnks~~d~~L~~~~n~a~iesqIK~LQ~qL~nF~IS~QD~EkELKkLg~s~alIqaiI~Ey 571 (1070)
T PHA01351 492 VSLGIFDQKKIKEELKANKFNEQVALQILESELQFAQLQNQLKEYQFKLNNFLISPQDLEKDLKHLGFDSAIISALIYEN 571 (1070)
T ss_pred HHcccccHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33466655 88888888888999999999999999987765433 3344444444444432
Q ss_pred ----------HHHHHHHHhh-CCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHHhCCCccchHHHHHHHhhcchh
Q psy15689 109 ----------NHLKDMILKT-FDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ 177 (295)
Q Consensus 109 ----------~~Lk~li~k~-FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~LnfaIk~IsdaG~q 177 (295)
+++.++++|- +|-+++-..|..=|-.-+.+
T Consensus 572 ftepL~KlQLnvyEsLakKGY~d~qq~ksElk~LGidKe~i--------------------------------------- 612 (1070)
T PHA01351 572 QVEQLIKFQLNNIESLAKKGYLSLDEIKKQFKAIGIIKEYE--------------------------------------- 612 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhhccchhHH---------------------------------------
Confidence 2233333332 24444444444333222222
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhhccc------hhH-----HHHH-HHHHHHhccCCc
Q psy15689 178 REITSISTAAQQIEVFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQ------HTY-----VYSQ-VLLQVLSLESKG 245 (295)
Q Consensus 178 ~EI~sv~taa~~~eVF~rvL~~~l~~~~~~~d~~~~~~~el~km~C~se------hTY-----lyaQ-~lL~~L~~~~~g 245 (295)
+-++|+..--=+.+++-+-++..++.|.=.+ ++++++|+|..-+.. .+| +|.| .++++|+.. +
T Consensus 613 ~klin~Y~ql~qt~~eIkYIqe~LK~f~Isp---keAitELKKL~ISdaLAn~IV~eYf~iP~l~~q~TViEnIikg--v 687 (1070)
T PHA01351 613 DAFINFYNQELQISAFLTILKSQLRQFQIDP---KEAETELKKLNINEYLANQIIQEEYNINIAKLQLSVLETIAKT--L 687 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCH---HHHHHHHHHcCchHHHHHHHHHHHhcchHHHHHHHHHHHHHhc--C
Confidence 2223332222456677788888887777432 233344443332221 122 3333 345566544 3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcchhHhhhcCCCC---chhHHHHHHHHhccC
Q psy15689 246 GSKVKRLAQEITKCAQQSGHDVTPIIMALNGAAF---YPQANQALSSMISRN 294 (295)
Q Consensus 246 ~~~~~rlsqele~~A~~~g~~v~~i~~~L~~~~~---yp~~~~a~~sml~~~ 294 (295)
....-.+++||. |-|.+-+.|-.+++-.|. ||....--+||++++
T Consensus 688 pint~~~~~ELK----KL~IpdSqInil~t~yy~~~~~~kls~~~~sl~~~g 735 (1070)
T PHA01351 688 YYDQQQLSGELK----KIHKDKTALELYITKFYYEYIYPKISNYHLQLARHG 735 (1070)
T ss_pred CcchHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334455666654 778888888888876554 688888888887754
No 6
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=53.02 E-value=2.8e+02 Score=29.11 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=46.5
Q ss_pred HHHHhhcchhhhhhhhhhHHhHHHHHHHHHHHHHHHhhc-C-chhHHHHHHHHHHhhhccchhHHHHHHHHHHHhccCCc
Q psy15689 168 IKLISDAGFQREITSISTAAQQIEVFSRVLKTSISNFLE-S-SDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKG 245 (295)
Q Consensus 168 Ik~IsdaG~q~EI~sv~taa~~~eVF~rvL~~~l~~~~~-~-~d~~~~~~~el~km~C~sehTYlyaQ~lL~~L~~~~~g 245 (295)
-..+-+|||+.|+ .|||..|.+ .+|..++. + =..+..++++=++-.|+.-..-+. ..+..+..+-++
T Consensus 372 FEtLveaGy~PE~-------AYfE~lhEl--kLIvdLi~e~Gl~~M~~~iSdTAeyG~y~~g~~vi--~~mk~~l~~Iq~ 440 (487)
T PRK05225 372 FETMVDSGIIEES-------AYYESLHEL--PLIANTIARKRLYEMNVVISDTAEYGNYLFSHAAV--PLLKDFMATLQP 440 (487)
T ss_pred HHHHHHcCCCHHH-------HHHHHHHHH--HHHHHHHHHhhHHHHHHHhhhHhhcCCcccChHHH--HHHHHHHHHcCC
Confidence 3455788998775 599999998 66666663 3 456677777777777764443333 344444444444
Q ss_pred hhHHHHH
Q psy15689 246 GSKVKRL 252 (295)
Q Consensus 246 ~~~~~rl 252 (295)
+.-+++.
T Consensus 441 G~fak~~ 447 (487)
T PRK05225 441 GDLGKGL 447 (487)
T ss_pred CHHHhhH
Confidence 4444444
No 7
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=51.68 E-value=19 Score=27.72 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHhcCCCcchh
Q psy15689 227 HTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPI 270 (295)
Q Consensus 227 hTYlyaQ~lL~~L~~~~~g~~~~~rlsqele~~A~~~g~~v~~i 270 (295)
+.++|||.++-.|++..-|+..++.+-|++-..|.+.|.+....
T Consensus 1 ~Gli~SE~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~~l~e~ 44 (81)
T PF10397_consen 1 GGLIFSERVMLALAEKGLGRQEAHELVQEAAMEAWENGRDLREV 44 (81)
T ss_dssp TTGGGHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS-HHHH
T ss_pred CcchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 46789999999999765678899999999999999888765444
No 8
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=51.51 E-value=50 Score=22.61 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=35.9
Q ss_pred HHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHh
Q psy15689 86 ANLVAEWLIL--GGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMI 142 (295)
Q Consensus 86 ~nLl~~WL~~--~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI 142 (295)
..+...||.. ..+++...+. -+.+++.-|+..|--.+.+.|-.. ..-.|+++|+
T Consensus 3 ~~~~~~wl~~~~~~~~~~T~~~-y~~~~~~~i~p~~g~~~i~~It~~--~i~~~~~~l~ 58 (58)
T PF14659_consen 3 SEFFEEWLEEYKSNLKPSTYKN-YKSIIKNHILPYFGNKKIKDITPR--DIQNFINELL 58 (58)
T ss_dssp HHHHHHHHHHHTCTSSHHHHHH-HHHHHHHHHHHHTTSSBGGG--HH--HHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHHHHCcCcHHHCCHH--HHHHHHHHcC
Confidence 3456778887 6667776644 478888889999988888888644 3445665553
No 9
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=51.19 E-value=2.9e+02 Score=28.28 Aligned_cols=172 Identities=22% Similarity=0.236 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCCCCccccccHHHHHHHHHHcCCChHHHHHHHhhh--------hhhHHHHH---HHHHHHHHhhCCCHHH
Q psy15689 34 EVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQN--------YKAVAQMA---NLVAEWLILGGVNVTE 102 (295)
Q Consensus 34 ~~~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~Pe~vV~~Ls~~--------Y~G~aQm~---nLl~~WL~~~g~~~~e 102 (295)
.++..|+..+.- +.+ -|++...+.+-++ +|...|+.|+=+ =.|..+++ +++..=+..++.+..+
T Consensus 60 ~iL~~~l~~~~~-~~l-~~~~~~~L~~gL~---h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~ 134 (503)
T PF10508_consen 60 DILKRLLSALSP-DSL-LPQYQPFLQRGLT---HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLS 134 (503)
T ss_pred HHHHHHHhccCH-HHH-HHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHH
Confidence 446666665533 332 4455444444444 465566665322 13334443 3555555666778889
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcC--hhhHHHHHHHHHhCCCccchHHHHHHHhhcchhhhh
Q psy15689 103 VQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEH--PTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREI 180 (295)
Q Consensus 103 v~~~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~--~~WR~Liy~LaE~~p~cl~LnfaIk~IsdaG~q~EI 180 (295)
|....-+.|+.+... +...+.+|.... ..=|..++.. +.=|-=+|+| + -+|
T Consensus 135 Va~~A~~~L~~l~~~---~~~~~~l~~~~~--~~~L~~l~~~~~~~vR~Rv~el----------------~------v~i 187 (503)
T PF10508_consen 135 VAKAAIKALKKLASH---PEGLEQLFDSNL--LSKLKSLMSQSSDIVRCRVYEL----------------L------VEI 187 (503)
T ss_pred HHHHHHHHHHHHhCC---chhHHHHhCcch--HHHHHHHHhccCHHHHHHHHHH----------------H------HHH
Confidence 988888999998863 456677885543 3334444433 3344334443 2 235
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHhhcCchhH-HHHHHHH-HHhhhccchhH--HHHHHHHHHH
Q psy15689 181 TSISTAAQQIEVFSRVLKTSISNFLESSDDW-QSSVEEC-AKMVCHGQHTY--VYSQVLLQVL 239 (295)
Q Consensus 181 ~sv~taa~~~eVF~rvL~~~l~~~~~~~d~~-~~~~~el-~km~C~sehTY--lyaQ~lL~~L 239 (295)
.+++..+...-+.+.++...+ +-+.++|-+ +.+.-++ ..++. +.|++ |..+-++..|
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll-~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L 248 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLL-KELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKL 248 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHH-HHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHH
Confidence 556665555555555443333 344445543 5444444 44444 66653 4434333333
No 10
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=50.29 E-value=1.3e+02 Score=27.29 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=67.4
Q ss_pred cccHHHHHHHHHHcCCChHH--------HHHHHhhhhhhHH-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH---HHH-Hh
Q psy15689 51 EPGIFSQLKRYFQAGGNPEQ--------VIELLSQNYKAVA-QMANLVAEWLILGGVNVTEVQAMVENHLK---DMI-LK 117 (295)
Q Consensus 51 Ep~i~~~ik~Y~~~GG~Pe~--------vV~~Ls~~Y~G~a-Qm~nLl~~WL~~~g~~~~ev~~~~e~~Lk---~li-~k 117 (295)
.|..+..++..|+.=|.+.. ..--|+-+.-+|. -++.-+.+|....|+++++...++...++ +++ ..
T Consensus 137 ~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~ 216 (267)
T PRK11880 137 SAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLES 216 (267)
T ss_pred CHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556677777777554422 2222444444444 67889999999999999998777665554 333 33
Q ss_pred hCCcchh-hhhhccCCCCcHHHHHHhcChhhHHHHHH
Q psy15689 118 TFDPKKA-DTIFTEEGETPAWLTEMIEHPTWRSLIYR 153 (295)
Q Consensus 118 ~FDp~ka-D~ift~~g~~p~WL~~MI~~~~WR~Liy~ 153 (295)
.-+|... |.|-|..|.|-+.|+.|=++ ..|..+.+
T Consensus 217 ~~~~~~l~~~v~tpgG~t~~gl~~l~~~-g~~~~~~~ 252 (267)
T PRK11880 217 GEHPAELRDNVTSPGGTTIAALRVLEEK-GLRAAVIE 252 (267)
T ss_pred CCCHHHHHHhCCCCcHHHHHHHHHHHHC-CHHHHHHH
Confidence 4567766 88888888999999998665 44444443
No 11
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=48.31 E-value=91 Score=24.38 Aligned_cols=48 Identities=27% Similarity=0.509 Sum_probs=33.6
Q ss_pred HHcCCChHHHHHHHhhhhhhH--HHHHHHHHHHHHhhCCCHHHHHHHHHHH
Q psy15689 62 FQAGGNPEQVIELLSQNYKAV--AQMANLVAEWLILGGVNVTEVQAMVENH 110 (295)
Q Consensus 62 ~~~GG~Pe~vV~~Ls~~Y~G~--aQm~nLl~~WL~~~g~~~~ev~~~~e~~ 110 (295)
+..|++|+.|-+.+.+...++ ..+.. +-.=|..-|+++++|+.++-=|
T Consensus 9 Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~-~Eq~Li~eG~~~eeiq~LCdvH 58 (71)
T PF04282_consen 9 LHEGEDPEEVKEEFKKLFSDVSASEISA-AEQELIQEGMPVEEIQKLCDVH 58 (71)
T ss_pred HhCCCCHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHcCCCHHHHHHHhHHH
Confidence 456999999988888887764 23333 3333444899999999887644
No 12
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=47.32 E-value=50 Score=33.59 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=65.5
Q ss_pred ccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHH---HhhCCCHHHHHHHHHHH------------HHHH--
Q psy15689 52 PGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWL---ILGGVNVTEVQAMVENH------------LKDM-- 114 (295)
Q Consensus 52 p~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL---~~~g~~~~ev~~~~e~~------------Lk~l-- 114 (295)
|.+++.++.|+++=|...-++..+..||.+-..++.++++=+ ...|.+++++-+++... ..++
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 477889999999866655667778999999988888766655 34457888887776522 1222
Q ss_pred -------HHhhCCcchhhhhhccCCCCcHHHHHHhc
Q psy15689 115 -------ILKTFDPKKADTIFTEEGETPAWLTEMIE 143 (295)
Q Consensus 115 -------i~k~FDp~kaD~ift~~g~~p~WL~~MI~ 143 (295)
..++|-|.. ...+++-+..|.|.++|++
T Consensus 239 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 273 (495)
T PRK07531 239 GEAGMRHFLAQFGPCL-KWPWTKLMDVPDLDDALVD 273 (495)
T ss_pred cHHHHHHHHHHhchhh-hhHHHhccCCCccCHHHHH
Confidence 356777776 3567777788999888886
No 13
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=46.80 E-value=92 Score=22.46 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=30.1
Q ss_pred cccccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhh
Q psy15689 49 IMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKT 118 (295)
Q Consensus 49 IMEp~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li~k~ 118 (295)
.+.+......+ .+..+.+.+++++.|.+.| +++++++++=+...|.++..+.
T Consensus 14 ~Ln~~a~~Iw~-~~~g~~t~~ei~~~l~~~y-----------------~~~~~~~~~dv~~fl~~L~~~g 65 (68)
T PF05402_consen 14 TLNETAAFIWE-LLDGPRTVEEIVDALAEEY-----------------DVDPEEAEEDVEEFLEQLREKG 65 (68)
T ss_dssp ---THHHHHHH-H--SSS-HHHHHHHHHHHT-----------------T--HHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHH-HccCCCCHHHHHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHCc
Confidence 34443333333 3355567899999999888 4677777777777777776654
No 14
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=46.27 E-value=33 Score=28.03 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=35.0
Q ss_pred HHHHhcCCCCccccccHHHHHHHHHHcCCChHHHHHHHhh
Q psy15689 38 ECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQ 77 (295)
Q Consensus 38 e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~Pe~vV~~Ls~ 77 (295)
|..+.-+.....|.|++|..|-+.++.+=+|..+.++|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~ 68 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKS 68 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4555556789999999999999999999999999999875
No 15
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.16 E-value=1.1e+02 Score=23.99 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhhC
Q psy15689 53 GIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTF 119 (295)
Q Consensus 53 ~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li~k~F 119 (295)
.++..|++|+.. |+..+++..|.+==.. .+...++..++..+.-..+..++.+-.-|..++.+++
T Consensus 4 ~i~~~l~ey~~~-~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 4 KIFSILMEYFSS-GDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHHH-T-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 578889999998 5889999999883222 5777788888888877756666777777777776654
No 16
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=43.45 E-value=17 Score=32.79 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=32.9
Q ss_pred HHHHHHHHH--hhCCcchhhhhhccCCCCcHHHHHHhc-ChhhHHHHHHHHH
Q psy15689 108 ENHLKDMIL--KTFDPKKADTIFTEEGETPAWLTEMIE-HPTWRSLIYRLAE 156 (295)
Q Consensus 108 e~~Lk~li~--k~FDp~kaD~ift~~g~~p~WL~~MI~-~~~WR~Liy~LaE 156 (295)
|..|-++.. -+-..+.+-..|.+.-+.|.||+.+++ ++.|...+-+.++
T Consensus 147 Er~i~~l~v~~~gmpR~~Fi~~f~gnEtn~~Wl~~~~~~~~~~~~~l~~~~~ 198 (211)
T PF04546_consen 147 ERRIMRLCVRRAGMPRKEFIKSFPGNETNPNWLDKLIKAKKKWAEALERHAP 198 (211)
T ss_dssp HHHHHHCCCTTTT--HHHCCCCCTTT-SSCCCTHHHHTT-SCCHHHGGGTHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHccCcccHHHHHHHHHHcCChHHHHHHHhHH
Confidence 445555552 245567788899887789999999997 8999888765543
No 17
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=41.37 E-value=5e+02 Score=28.18 Aligned_cols=149 Identities=15% Similarity=0.245 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCC--------hHHHHHHHhhhhhhHHHHHHHHHHHHH-------------hhCCCHHHHHHHHHHHHH
Q psy15689 54 IFSQLKRYFQAGGN--------PEQVIELLSQNYKAVAQMANLVAEWLI-------------LGGVNVTEVQAMVENHLK 112 (295)
Q Consensus 54 i~~~ik~Y~~~GG~--------Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~-------------~~g~~~~ev~~~~e~~Lk 112 (295)
.+..+-.+++.++. +.+-++.|.+--.+.+..+.-+..|+. .+|+.+.. =|.+-++
T Consensus 9 ~L~~Lv~wlR~~~~~~~~~~~~a~~rl~~Ll~~L~~~p~~~~~l~~~l~~~l~~~~~~~L~~d~Gi~~~~---gF~~El~ 85 (643)
T PF10136_consen 9 WLIDLVDWLRPADPDDDDSVAAAHARLRALLDVLERNPELRAALRRYLRRLLRERRQYPLLTDSGILSRS---GFFSELS 85 (643)
T ss_pred HHHHHHHHhCccCCCCccccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCCc---cHHHHHH
Confidence 34455566664432 345566666666666666555555543 23333333 3678888
Q ss_pred HHHHhhCCcchhh---------hhhccCCCCcHHHHHHhcChhhHHHHHHH-HHhCCCc-----------cchHHHHHHH
Q psy15689 113 DMILKTFDPKKAD---------TIFTEEGETPAWLTEMIEHPTWRSLIYRL-AEEYPDC-----------LMLNFTIKLI 171 (295)
Q Consensus 113 ~li~k~FDp~kaD---------~ift~~g~~p~WL~~MI~~~~WR~Liy~L-aE~~p~c-----------l~LnfaIk~I 171 (295)
+-+.++|-|.--| .+|.+. +-..||.. |.+.+|.+|+=-| .+..++. .=+....-+|
T Consensus 86 ~Rl~~r~lP~~~d~~~l~~lf~~lF~~~-~D~~Wl~a-i~~~~w~~L~~lL~~~~~~~~~~~~~~~~~ll~Ai~~Ls~~I 163 (643)
T PF10136_consen 86 RRLYERLLPAPPDPNDLSDLFNLLFPRP-SDAEWLEA-IPDETWLRLFELLGAEEEEDQDASPHWRQELLDAIEMLSYRI 163 (643)
T ss_pred HHHHhhcCCCCCChhHHHHHHHHHCCCC-CcHHHHHh-CCHHHHHHHHHHhCcCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 8899999886544 566554 56799975 7889999988777 1111111 1133344566
Q ss_pred hhcchhhhhhhhhh----HHhHHHHHHHHHHHHHHHhhcC
Q psy15689 172 SDAGFQREITSIST----AAQQIEVFSRVLKTSISNFLES 207 (295)
Q Consensus 172 sdaG~q~EI~sv~t----aa~~~eVF~rvL~~~l~~~~~~ 207 (295)
+-.|+..|+...-+ ..+-|-..+|-+..-+....+.
T Consensus 164 ~a~glepel~r~~p~~~~~~sPF~al~~e~~~~~~~~~~~ 203 (643)
T PF10136_consen 164 AAEGLEPELRRRMPELEERDSPFVALQREVEAFLEAYRQQ 203 (643)
T ss_pred HhcccCHHHHhhCCCCcccCCCHHHHHHHHHHHHHHHhhc
Confidence 77899999988855 3456666666666666665554
No 18
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=41.11 E-value=1.4e+02 Score=22.01 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q psy15689 53 GIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKD 113 (295)
Q Consensus 53 ~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~ 113 (295)
.+|..+..+...|-+++. .=+..+-+++..+.... ....+..||..++.|..|-
T Consensus 15 ~lf~~a~~~~~~~v~~~~------~~~~~v~~~~~~~N~~~-~~PL~~~Ev~~i~kSi~k~ 68 (71)
T PF08708_consen 15 TLFRLARRLAYRGVDQEE------QFRQEVLSLAQAINSNF-SPPLPESEVKAIAKSIAKW 68 (71)
T ss_pred HHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHh
Confidence 467888888888888777 33344444555555553 7788999999998887763
No 19
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=41.06 E-value=11 Score=29.61 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=9.0
Q ss_pred hcCCCCccccccHHHHHHHHHHcCC
Q psy15689 42 KFSTPDYIMEPGIFSQLKRYFQAGG 66 (295)
Q Consensus 42 ~l~~~DaIMEp~i~~~ik~Y~~~GG 66 (295)
.|..-|.++|-+.-..++.|+|.||
T Consensus 44 lLDeID~vLE~NAeeFVr~fVQKGG 68 (69)
T PF05639_consen 44 LLDEIDSVLETNAEEFVRSFVQKGG 68 (69)
T ss_dssp HHHHHTTTSSSC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445688999999999999999998
No 20
>COG3512 CRISPR-associated protein, Cas2 homolog [Defense mechanisms]
Probab=40.26 E-value=36 Score=28.79 Aligned_cols=19 Identities=53% Similarity=0.934 Sum_probs=15.2
Q ss_pred HHhhcchhhhhhhhhhHHhHHHHHHHHHH
Q psy15689 170 LISDAGFQREITSISTAAQQIEVFSRVLK 198 (295)
Q Consensus 170 ~IsdaG~q~EI~sv~taa~~~eVF~rvL~ 198 (295)
+|+| ||| -.||+|++|+++
T Consensus 33 Llk~-Gy~---------MlQfSvYsri~k 51 (116)
T COG3512 33 LLKD-GYQ---------MLQFSVYSRILK 51 (116)
T ss_pred HHHh-hHH---------HHHHHHHHHHHh
Confidence 3455 998 789999999874
No 21
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.33 E-value=6e+02 Score=28.93 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=16.0
Q ss_pred CCccccccHHHHHHHHHHcCCChHHHHHHH
Q psy15689 46 PDYIMEPGIFSQLKRYFQAGGNPEQVIELL 75 (295)
Q Consensus 46 ~DaIMEp~i~~~ik~Y~~~GG~Pe~vV~~L 75 (295)
.....+++....|-++ ++|+|-.++.+|
T Consensus 194 EgI~~edeAL~lIA~~--S~Gd~R~ALnLL 221 (944)
T PRK14949 194 EQLPFEAEALTLLAKA--ANGSMRDALSLT 221 (944)
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHH
Confidence 3445555555555544 566666666655
No 22
>PF15601 Imm42: Immunity protein 42
Probab=38.27 E-value=1.5e+02 Score=25.89 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHH-HHHHHHHHHhhCCcchhhhhhccC
Q psy15689 53 GIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMV-ENHLKDMILKTFDPKKADTIFTEE 131 (295)
Q Consensus 53 ~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~-e~~Lk~li~k~FDp~kaD~ift~~ 131 (295)
+.|++|.-+...+|-=..-.-++-+-|+|+ .+.+++.... |-.--+.+.++|-|+++.==...-
T Consensus 20 sFFsti~~~lE~~~wGskfP~Lm~~LY~g~---------------L~~~~~~~A~~eL~~I~~~l~~~~p~~ViWD~~dl 84 (134)
T PF15601_consen 20 SFFSTISYRLENEGWGSKFPLLMNELYRGY---------------LRYEELEKALKELEEIRKELKKFPPSEVIWDIEDL 84 (134)
T ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHcCC---------------CCHHHHHHHHHHHHHHHHHHhcCChhhheechhhc
Confidence 468888888888886666667777778886 4555543322 333345667778888887222222
Q ss_pred CCCcHH
Q psy15689 132 GETPAW 137 (295)
Q Consensus 132 g~~p~W 137 (295)
..+|.|
T Consensus 85 ~~~ppW 90 (134)
T PF15601_consen 85 SKQPPW 90 (134)
T ss_pred ccCCCC
Confidence 367888
No 23
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=38.20 E-value=2e+02 Score=22.63 Aligned_cols=63 Identities=14% Similarity=0.307 Sum_probs=37.2
Q ss_pred HHHHhcCCCCccccccHHHHHHHHHHcCCChHHHHHHHhhhhhhHH-------------------HHHHHHHHHHHhhCC
Q psy15689 38 ECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVA-------------------QMANLVAEWLILGGV 98 (295)
Q Consensus 38 e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~a-------------------Qm~nLl~~WL~~~g~ 98 (295)
.+.+.|-.++.--++......=-=++.=-+|.++.+.|.+-|.... .+++++..|+.....
T Consensus 4 ~Li~~L~~~~~~~d~~f~~~FllTyrsF~s~~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~Wv~~~~~ 83 (122)
T cd06224 4 ALIEHLTSTFDMPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPENLEYNDWDKKKSKPIRLRVLNVLRTWVENYPY 83 (122)
T ss_pred HHHHHHcCCCccccHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444444323333333321112334578889999988888532 568888888888887
Q ss_pred CH
Q psy15689 99 NV 100 (295)
Q Consensus 99 ~~ 100 (295)
+.
T Consensus 84 df 85 (122)
T cd06224 84 DF 85 (122)
T ss_pred cc
Confidence 65
No 24
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=38.18 E-value=1.5e+02 Score=24.21 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCChHHHHHHHhhhhh--hHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q psy15689 56 SQLKRYFQAGGNPEQVIELLSQNYK--AVAQMANLVAEWLILGGVNVTEVQAMVENHLKD 113 (295)
Q Consensus 56 ~~ik~Y~~~GG~Pe~vV~~Ls~~Y~--G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~ 113 (295)
...|+|.+.=|=++.-|+....+|. ..-|.-.+|..|....|.+.+- ++++ ..|++
T Consensus 21 ~~wK~faR~lglse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~G~~a~~-~~Li-~aLr~ 78 (97)
T cd08316 21 KDVKKFVRKSGLSEPKIDEIKLDNPQDTAEQKVQLLRAWYQSHGKTGAY-RTLI-KTLRK 78 (97)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHHhCCCchH-HHHH-HHHHH
Confidence 4688999999999999999998874 5799999999999999887652 3444 44444
No 25
>PLN02688 pyrroline-5-carboxylate reductase
Probab=37.30 E-value=1.7e+02 Score=26.40 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHH----HHHHhhCCcchh-hhhhccCCCCcHHHHHHhcChhhHHHHHH
Q psy15689 83 AQMANLVAEWLILGGVNVTEVQAMVENHLK----DMILKTFDPKKA-DTIFTEEGETPAWLTEMIEHPTWRSLIYR 153 (295)
Q Consensus 83 aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk----~li~k~FDp~ka-D~ift~~g~~p~WL~~MI~~~~WR~Liy~ 153 (295)
+.+..-+++|....|+++++..+++...+. -+.....+|... |.|-|-.|.|-+.|..|-++ ..|..|.+
T Consensus 177 ~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~spgG~t~~~l~~l~~~-g~~~~~~~ 251 (266)
T PLN02688 177 FLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSPGGTTIAGVHELEKG-GFRAALMN 251 (266)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchHHHHHHHHHHHC-ChHHHHHH
Confidence 578888999999999999998887754443 233345777776 88888888888888888764 45555444
No 26
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=37.05 E-value=5.7e+02 Score=27.64 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=26.9
Q ss_pred CCcHHHHHHhc-ChhhHHHHHHHHHhCCCccchHHH
Q psy15689 133 ETPAWLTEMIE-HPTWRSLIYRLAEEYPDCLMLNFT 167 (295)
Q Consensus 133 ~~p~WL~~MI~-~~~WR~Liy~LaE~~p~cl~Lnfa 167 (295)
..-.|++.|++ ...|..++=.|..-+.+.+++...
T Consensus 263 ~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~ 298 (647)
T PRK07994 263 RVMALINQLAERGPDWEGLLVELLELLHRIAMAQLL 298 (647)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 34488999887 558999998888888887777543
No 27
>smart00528 HNS Domain in histone-like proteins of HNS family.
Probab=34.07 E-value=27 Score=25.01 Aligned_cols=26 Identities=23% Similarity=0.598 Sum_probs=19.6
Q ss_pred CCcchhhhhhccCCCCcHHHHHHhcC
Q psy15689 119 FDPKKADTIFTEEGETPAWLTEMIEH 144 (295)
Q Consensus 119 FDp~kaD~ift~~g~~p~WL~~MI~~ 144 (295)
-+|+.-..-+|..|..|.||.+.|+.
T Consensus 12 r~p~~~g~tWsGrGr~P~W~~~~l~~ 37 (46)
T smart00528 12 RYPDNNGETWSGRGRTPRWLAAALDS 37 (46)
T ss_pred CCCCCCCCcccCCCCCCHHHHHHHHc
Confidence 34554445789999999999998753
No 28
>COG2733 Predicted membrane protein [Function unknown]
Probab=34.04 E-value=5.5e+02 Score=26.52 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCC-ChHHHHHHHhhhhhhHHHHHHHHHHHHHhhC-------------------CCHHHHHHHHHHHHHH
Q psy15689 54 IFSQLKRYFQAGG-NPEQVIELLSQNYKAVAQMANLVAEWLILGG-------------------VNVTEVQAMVENHLKD 113 (295)
Q Consensus 54 i~~~ik~Y~~~GG-~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g-------------------~~~~ev~~~~e~~Lk~ 113 (295)
|...+-.|+++.= +|+.+.++|.+ +++++.+++||+... .++..+|..+++-+-+
T Consensus 83 i~e~l~~FV~~~fLs~e~i~~Kl~~-----~~~a~~igewls~~en~~~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~~ 157 (415)
T COG2733 83 IGENLGQFVQNNFLSPESINEKLRR-----ADIASRIGEWLSQPENAQRVSQETLKLLSQLLELLDDDDIQRVIKRAVIR 157 (415)
T ss_pred HHHHHHHHHHHcccChHHHHHHHHh-----cCHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4556677777754 77888888776 478899999998731 1444555555444444
Q ss_pred HHHhhCCcchhhhhh---ccCCC-------CcHHHHHHhcChhhH----HHHHHHHH-hCCCccchHHHHHHH
Q psy15689 114 MILKTFDPKKADTIF---TEEGE-------TPAWLTEMIEHPTWR----SLIYRLAE-EYPDCLMLNFTIKLI 171 (295)
Q Consensus 114 li~k~FDp~kaD~if---t~~g~-------~p~WL~~MI~~~~WR----~Liy~LaE-~~p~cl~LnfaIk~I 171 (295)
-|.|-++.+-+-.+. +.+.. --.||-.......=| ++|-++.| ++| ..-..+++..+
T Consensus 158 ~i~e~~~~~~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~~~v~~~i~~~i~r~~~ee~p-~f~~~~~~~~v 229 (415)
T COG2733 158 AIAEVYLGPTAGRVLESLTADDRHQALLDKLIDRLIRWLLNDKVREFIAAVIVRYLEEEHP-LFAPIIIVSLV 229 (415)
T ss_pred HHhcccccchHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCc-cchhhhhHHHH
Confidence 444444444333322 22222 234555555666666 45555555 556 44444444443
No 29
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=33.80 E-value=1e+02 Score=33.39 Aligned_cols=105 Identities=17% Similarity=0.366 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHH---HHHhhCCCHHHHHHHHHHHHHHHHHh-------hCCc
Q psy15689 52 PGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAE---WLILGGVNVTEVQAMVENHLKDMILK-------TFDP 121 (295)
Q Consensus 52 p~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~---WL~~~g~~~~ev~~~~e~~Lk~li~k-------~FDp 121 (295)
+.|+.+|-+|-...-+|..+.|..-..-. .|+|+-+.. +|.....+++ +|+.+.+-+.+ ..||
T Consensus 539 ~tIlE~l~d~~~~~kd~~~LtE~VR~~L~--r~I~~~~~~~~~~L~vi~l~p~-----~E~~l~~~i~~~~~g~~~~l~P 611 (678)
T TIGR01398 539 PTILETLADYAPITKDPDLLVEHVRQRLG--RQITQQYLDEDGVLPVITLDPD-----LEAALAEALQRDGEGELLDLEP 611 (678)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHH--HHHHHHHhCCCCeeEEEEeCHH-----HHHHHHHHHhccCCCCccCcCH
Confidence 45666677776666676665555433322 244444432 3333333332 23334444432 2667
Q ss_pred chhhhhhccCCCCcHHHHH---------HhcChhhHHHHHHHHHhC-CCccchHH
Q psy15689 122 KKADTIFTEEGETPAWLTE---------MIEHPTWRSLIYRLAEEY-PDCLMLNF 166 (295)
Q Consensus 122 ~kaD~ift~~g~~p~WL~~---------MI~~~~WR~Liy~LaE~~-p~cl~Lnf 166 (295)
+.+..+...= .+=++. ++-+|..|+.+.+|.|++ |+-..|+|
T Consensus 612 ~~~~~l~~~~---~~~~~~~~~~g~~pvll~s~~iR~~lr~l~e~~~p~l~VLS~ 663 (678)
T TIGR01398 612 ALLEELVRAV---RKAVEKLANNGERPVLLTSPRVRPYVRRILERFFPELPVLSY 663 (678)
T ss_pred HHHHHHHHHH---HHHHHHHHhcCCCeEEEeCHHHHHHHHHHHHHhCCCCEEeCH
Confidence 7666665431 111222 456788999999999955 99988876
No 30
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=33.07 E-value=76 Score=27.51 Aligned_cols=44 Identities=18% Similarity=0.414 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCHHHHHHHHH--HHHHHHHHhhCCcchhhhhhccCC
Q psy15689 87 NLVAEWLILGGVNVTEVQAMVE--NHLKDMILKTFDPKKADTIFTEEG 132 (295)
Q Consensus 87 nLl~~WL~~~g~~~~ev~~~~e--~~Lk~li~k~FDp~kaD~ift~~g 132 (295)
.-+..||...|+.++.++.++. ..|.+++ .-+.+.+=+++...|
T Consensus 67 P~l~~WL~vVgl~~~~i~~i~~~~~tLe~Ll--emsd~el~~~l~~~g 112 (129)
T PF13543_consen 67 PSLRQWLRVVGLRPESIQAILSKVLTLEALL--EMSDEELKEILNRCG 112 (129)
T ss_pred CcHHHHhhhcCCCHHHHHHHHHhhcCHHHHH--hCCHHHHHHHHHHhC
Confidence 6689999999999999999864 2222222 223444444444444
No 31
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=32.85 E-value=55 Score=27.19 Aligned_cols=52 Identities=12% Similarity=0.438 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHHhCCCccchHHH
Q psy15689 108 ENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFT 167 (295)
Q Consensus 108 e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~Lnfa 167 (295)
+..|+++| +.+.| ...-+|..-..+..|. +.+++.+.++|++||++.++++.
T Consensus 66 ~~nl~~ii-~~~~~-~~~ivlv~~~~~~~~~------~~~n~~~~~~a~~~~~v~~id~~ 117 (150)
T cd01840 66 KDQLDELL-DALGP-DRQVYLVNPHVPRPWE------PDVNAYLLDAAKKYKNVTIIDWY 117 (150)
T ss_pred HHHHHHHH-HHcCC-CCEEEEEECCCCcchH------HHHHHHHHHHHHHCCCcEEecHH
Confidence 45555544 34544 2333444333455673 57899999999999999999974
No 32
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=32.60 E-value=4.8e+02 Score=29.04 Aligned_cols=113 Identities=16% Similarity=0.226 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHH------------HHHHHHhhCCcchhhh----hhcc--CCCCcHHHHHHhcCh-h
Q psy15689 86 ANLVAEWLILGGVNVTEVQAMVENH------------LKDMILKTFDPKKADT----IFTE--EGETPAWLTEMIEHP-T 146 (295)
Q Consensus 86 ~nLl~~WL~~~g~~~~ev~~~~e~~------------Lk~li~k~FDp~kaD~----ift~--~g~~p~WL~~MI~~~-~ 146 (295)
|....-||..+|.++.+..+.++.| ||+++....++...|- +.+. ..+..+=|..++... .
T Consensus 92 aD~~si~l~eLgl~~~~l~~~~k~~~kFF~~k~R~~~lkkl~~~~~~~~~l~~~mlAvl~~~~~~~~~~Il~~ll~~~~~ 171 (844)
T TIGR02687 92 ADRISIILSELEIDGLELRDHFQAREKFFGAKERVQALKKLVTKDDREKELDLKMLAVFSGSEAPEFKQIVRDLLLKSVD 171 (844)
T ss_pred CCHHHHHHHHhCCCchhHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCccchhHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Confidence 5667789999999776776666543 4444433334443332 2222 113333333333221 1
Q ss_pred -hHHHHHHHHHhCCCccchHHHHHHHhh-cchhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcC
Q psy15689 147 -WRSLIYRLAEEYPDCLMLNFTIKLISD-AGFQREITSISTAAQQIEVFSRVLKTSISNFLES 207 (295)
Q Consensus 147 -WR~Liy~LaE~~p~cl~LnfaIk~Isd-aG~q~EI~sv~taa~~~eVF~rvL~~~l~~~~~~ 207 (295)
..+.+++.-++|- ++.+--+++.+ -||..|- ++.. ..|.++|.+++..-+.+
T Consensus 172 ~~~n~~~~~~~k~~---l~~~fW~~~~~~~Gy~~e~---psl~---~l~~~ll~t~~~~~l~~ 225 (844)
T TIGR02687 172 DGENPIWENISRFG---LEGNFWELTEQDFGYSAEN---PTLR---DLFLSLLITDMKRYSDG 225 (844)
T ss_pred ccchHHHHHHHHcC---CHHHHHHHHHHhcCCCCCC---CCHH---HHHHHHHHHHHHHhccc
Confidence 4444555555544 55777788875 7998764 3322 23467777887777754
No 33
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=32.28 E-value=53 Score=28.70 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCCcchhHhhhcCCCCchhHHHHHHHHhccC
Q psy15689 250 KRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISRN 294 (295)
Q Consensus 250 ~rlsqele~~A~~~g~~v~~i~~~L~~~~~yp~~~~a~~sml~~~ 294 (295)
-.|.+.|.++..++||.|.++...=..+..||.+...+...+.++
T Consensus 11 ~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~ 55 (143)
T TIGR01120 11 FILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGG 55 (143)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 457788888888999999888764345667999888877766543
No 34
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=32.22 E-value=4.7e+02 Score=29.02 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=15.5
Q ss_pred HHHHHHhcC-hhhHHHHHHHHHhCCCcc
Q psy15689 136 AWLTEMIEH-PTWRSLIYRLAEEYPDCL 162 (295)
Q Consensus 136 ~WL~~MI~~-~~WR~Liy~LaE~~p~cl 162 (295)
.||+.|++. ...++++..|.+.+.+-+
T Consensus 268 ~~l~~Li~~G~dp~~~L~~LL~~fRDLL 295 (824)
T PRK07764 268 GTVDRVIEAGHDPRRFAEDLLERLRDLI 295 (824)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 566676643 246666666666554433
No 35
>PRK14136 recX recombination regulator RecX; Provisional
Probab=32.18 E-value=4.7e+02 Score=25.90 Aligned_cols=125 Identities=11% Similarity=0.125 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHhcCCCCccccccHHHHHHHHHHcCCChHHHHH----HH-hhhhhhHHHHHHHHHHHHHhhCCCHHHHHH
Q psy15689 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIE----LL-SQNYKAVAQMANLVAEWLILGGVNVTEVQA 105 (295)
Q Consensus 31 ~~~~~~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~Pe~vV~----~L-s~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~ 105 (295)
.+..+++.++..|+..+. --.-|+++++.-|-++++|+ .| ..||.--..+|..+..= .....++.-|
T Consensus 160 ~~~~lk~kAL~lLSrReR-----Se~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~-R~~kkGp~rI-- 231 (309)
T PRK14136 160 PARSLKGRALGYLSRREY-----SRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHR-RASRVGSARI-- 231 (309)
T ss_pred cHHHHHHHHHHHhhcccc-----cHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHH-HhhchhHHHH--
Confidence 556677888888888775 23445666666565544333 33 34666666666555421 1122222221
Q ss_pred HHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHHhC----CC-ccchHHHHHHHhhcchhhhh
Q psy15689 106 MVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEY----PD-CLMLNFTIKLISDAGFQREI 180 (295)
Q Consensus 106 ~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE~~----p~-cl~LnfaIk~IsdaG~q~EI 180 (295)
. .+|-.|-.++..++.++... ...|-..+..|+++. |. .......++-+...||-.++
T Consensus 232 --r---qELrQKGId~eLIEqALeei------------eEDE~E~A~~L~eKK~~~~~~d~kek~K~iRfL~rRGFS~D~ 294 (309)
T PRK14136 232 --V---SELKRHAVGDALVESVGAQL------------RETEFERAQAVWRKKFGALPQTPAERAKQARFLAARGFSSAT 294 (309)
T ss_pred --H---HHHHHcCCCHHHHHHHHHhc------------cHhHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHCCCCHHH
Confidence 1 23334555555555555321 235666777777632 11 12233445666677887554
No 36
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.11 E-value=4.8e+02 Score=25.30 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=10.6
Q ss_pred ccccHHHHHHHHHHcCCChHHHHHHH
Q psy15689 50 MEPGIFSQLKRYFQAGGNPEQVIELL 75 (295)
Q Consensus 50 MEp~i~~~ik~Y~~~GG~Pe~vV~~L 75 (295)
++|.....|-++ +||+|-.+++.|
T Consensus 198 i~~~al~~ia~~--s~G~~R~al~~l 221 (363)
T PRK14961 198 TDEYALKLIAYH--AHGSMRDALNLL 221 (363)
T ss_pred CCHHHHHHHHHH--cCCCHHHHHHHH
Confidence 444444433332 345555544444
No 37
>COG3951 Rod binding protein [Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=32.02 E-value=1.1e+02 Score=27.75 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=37.4
Q ss_pred hhhhhHHhHHH-HHHHHHHHHHHHhhcCchhHHHHHHHHHHhhhccchhHH----HHHHHHHHHhccCCchhHHHHHHHH
Q psy15689 181 TSISTAAQQIE-VFSRVLKTSISNFLESSDDWQSSVEECAKMVCHGQHTYV----YSQVLLQVLSLESKGGSKVKRLAQE 255 (295)
Q Consensus 181 ~sv~taa~~~e-VF~rvL~~~l~~~~~~~d~~~~~~~el~km~C~sehTYl----yaQ~lL~~L~~~~~g~~~~~rlsqe 255 (295)
.++-++|.+|| ||.+++..+....+.. +.--.-.|++|=| |=|.|=+.|+.. +|--++.-|-+.
T Consensus 29 ~~l~~~ArqfE~vFv~mMLKSMR~Al~~----------~~~dl~~S~q~rlYtdmyDqqlaqqlss~-~g~GLAd~lvkQ 97 (166)
T COG3951 29 ANLRQVARQFEGVFVQMMLKSMREALPK----------DGADLFNSQQTRLYTDMYDQQLAQQLSSQ-KGLGLADMLVKQ 97 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hcchhccchhHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHH
Confidence 45667777775 9999998886665533 2211223444444 455555555543 332244445555
Q ss_pred HHHHH
Q psy15689 256 ITKCA 260 (295)
Q Consensus 256 le~~A 260 (295)
|...|
T Consensus 98 l~~~a 102 (166)
T COG3951 98 LSPRA 102 (166)
T ss_pred hcccc
Confidence 55433
No 38
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=31.08 E-value=4.2e+02 Score=27.51 Aligned_cols=137 Identities=19% Similarity=0.265 Sum_probs=73.0
Q ss_pred hHHHHHHH--------HHhCCCccchHHHHHHH---hhcchhhhhh-----hhh-hHHhHHHHHHHHHHHHHHHhhcC--
Q psy15689 147 WRSLIYRL--------AEEYPDCLMLNFTIKLI---SDAGFQREIT-----SIS-TAAQQIEVFSRVLKTSISNFLES-- 207 (295)
Q Consensus 147 WR~Liy~L--------aE~~p~cl~LnfaIk~I---sdaG~q~EI~-----sv~-taa~~~eVF~rvL~~~l~~~~~~-- 207 (295)
|-.|+|-+ .++...-.++-.+++.| +.-|.|+-+- |+. ++|.|+.+|+....=.|.-..++
T Consensus 184 w~~L~fiigll~ql~L~de~~rf~l~~l~lP~I~lA~~yGWQG~llasllnsi~l~~arQ~~~fs~l~dLll~l~~Qal~ 263 (497)
T COG3851 184 WYLLLFIIGLLLQLGLPDELSRFTLFCLALPIIALAWHYGWQGALLASLLNSIALTIARQTWRFSHLVDLLLSLLAQALT 263 (497)
T ss_pred HHHHHHHHHHHHHhcChHhhhhHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 77777765 34555555555666666 4568888753 333 26677777876643333222222
Q ss_pred chhHHHHHHHHHHhhhccchhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHhc-CCCcchhH---hhhcCCCCchhH
Q psy15689 208 SDDWQSSVEECAKMVCHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQS-GHDVTPII---MALNGAAFYPQA 283 (295)
Q Consensus 208 ~d~~~~~~~el~km~C~sehTYlyaQ~lL~~L~~~~~g~~~~~rlsqele~~A~~~-g~~v~~i~---~~L~~~~~yp~~ 283 (295)
.--+.-+|+++.++--+=+---.=-|.+-+.|...+ +.+.+++-++-++. |.+++.|- .++.++.+.|++
T Consensus 264 Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListE------EsiRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~ 337 (497)
T COG3851 264 GLGLGIAIQRLRELNQRLQKELARNRALAEQLISTE------ESIRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQV 337 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhH------HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhH
Confidence 122344555555543332222222333333333222 22344555555555 88887774 456677777888
Q ss_pred HHHHHH
Q psy15689 284 NQALSS 289 (295)
Q Consensus 284 ~~a~~s 289 (295)
.+|-+.
T Consensus 338 kqaas~ 343 (497)
T COG3851 338 KQAASL 343 (497)
T ss_pred HhHHHH
Confidence 877443
No 39
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=30.65 E-value=74 Score=26.12 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHHhCC
Q psy15689 97 GVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYP 159 (295)
Q Consensus 97 g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE~~p 159 (295)
|.++..+=+-+-+|+++++.-+..++...... -++..+.-+.++|+..+
T Consensus 44 G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~--------------~~~~~~~~~~~~a~~~~ 92 (143)
T PF12169_consen 44 GKDPKQFLDDLIEYLRDLLLYKITGDKSNLLE--------------LSEEEEEKLKELAKKFS 92 (143)
T ss_dssp T--HHHHHHHHHHHHHHHHHHTTSGGGS-SG----------------CTTTHHHHHHHHHHS-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCchhhccc--------------CCHHHHHHHHHHHHcCC
Confidence 44444443334567777777777664333221 12334555666666664
No 40
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=30.29 E-value=14 Score=30.58 Aligned_cols=28 Identities=21% Similarity=0.636 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCccccccHHHHHHHHHHcCCChHH
Q psy15689 35 VLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQ 70 (295)
Q Consensus 35 ~~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~Pe~ 70 (295)
++..|.+.+.. +.+-.+||| +..|+...
T Consensus 3 ~l~~~~~~l~~-~~~~~~giF-------R~~g~~~~ 30 (169)
T cd00159 3 IIEKCIEYLEK-NGLNTEGIF-------RVSGSASK 30 (169)
T ss_pred HHHHHHHHHHH-cCCCcCCee-------eCCCcHHH
Confidence 56777777777 777788774 55666544
No 41
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=30.07 E-value=5.1e+02 Score=25.57 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCCCcccccc-HHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHH---
Q psy15689 33 QEVLNECLEKFSTPDYIMEPG-IFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVE--- 108 (295)
Q Consensus 33 ~~~~~e~~~~l~~~DaIMEp~-i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e--- 108 (295)
.+.++++++.+ |-+=|-. +.+.+..+|.. +|+++|+....+=.+..+++.+--.=...+-....--..+++
T Consensus 159 ~~~L~~~lra~---DG~~~~t~L~d~v~~~f~~--d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~aa 233 (301)
T COG2971 159 REALQEALRAF---DGRREATPLTDAVMAEFNL--DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRILKEAA 233 (301)
T ss_pred HHHHHHHHHHh---cCCccCChHHHHHHHHhCC--CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666654 6666666 66778888876 999999999887666644444333322222222211112232
Q ss_pred HHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHHhCCCccchHHHHHH
Q psy15689 109 NHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKL 170 (295)
Q Consensus 109 ~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~LnfaIk~ 170 (295)
..+++++.-.+-++....++.-.|-.| ..+.|..++++...-.|.|--+.=|+++
T Consensus 234 ~~i~~~~~~l~~~~g~~~l~l~GG~~~-------~~~~~~~~~~~~l~~~~~~D~~~GA~~~ 288 (301)
T COG2971 234 AYIATLLEALSIFNGSEKLSLLGGLAP-------SYPYYLSLFRRALLVPPIGDALSGAVLL 288 (301)
T ss_pred HHHHHHHHHHhcccCCceEEEeccccc-------cchhhHHHHHHHhcCCccccHHHHHHHH
Confidence 566666666655555555655554211 1366777777776666655555444443
No 42
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=29.77 E-value=2.4e+02 Score=25.97 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHH---HHHHhh-CCc-chhhhhhccCCCCcHHHHHHhcChhhHHHHHH
Q psy15689 83 AQMANLVAEWLILGGVNVTEVQAMVENHLK---DMILKT-FDP-KKADTIFTEEGETPAWLTEMIEHPTWRSLIYR 153 (295)
Q Consensus 83 aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk---~li~k~-FDp-~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~ 153 (295)
+-++.-+.+|....|+++++-+.++...++ +++++. .+| ...|.|-|-.|.|-+=|..| +....|+.|.+
T Consensus 173 ~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~T~~gl~~l-e~~g~~~~~~~ 247 (260)
T PTZ00431 173 FLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGITIVGLYTL-EKHAFKYTVMD 247 (260)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChHHHHHHHHH-HHCChHHHHHH
Confidence 456778899999999999999888766665 344433 455 55555665555666666655 33455555544
No 43
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=29.19 E-value=35 Score=29.58 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHH-H-------HHHHhhC-CcchhhhhhccCCCCcHHHHHHhc
Q psy15689 88 LVAEWLILGGVNVTEVQAMVENHL-K-------DMILKTF-DPKKADTIFTEEGETPAWLTEMIE 143 (295)
Q Consensus 88 Ll~~WL~~~g~~~~ev~~~~e~~L-k-------~li~k~F-Dp~kaD~ift~~g~~p~WL~~MI~ 143 (295)
-+..=+...|++++++-......- + .-.+=+| ||+.-..-+|+.|.+|.||.+-|+
T Consensus 60 ~i~~~~~~~Git~eeL~~~~~~~~~~~~~kr~~~p~KYr~~d~~G~~kTWTGrGR~P~wi~~al~ 124 (134)
T PRK10328 60 TWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYRFTDVNGETKTWTGQGRTPKPIAQALA 124 (134)
T ss_pred HHHHHHHHhCCCHHHHhhhhcccccccccCCCCCCCccCCCCCCCCcCcccCCCCCcHHHHHHHH
Confidence 334445567788887621111000 0 0123344 676666789999999999998774
No 44
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=28.62 E-value=66 Score=26.16 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=14.1
Q ss_pred HHHHHHHHhhCCcchhhhhhccC
Q psy15689 109 NHLKDMILKTFDPKKADTIFTEE 131 (295)
Q Consensus 109 ~~Lk~li~k~FDp~kaD~ift~~ 131 (295)
+++++++.+.|.|++|+.|+..-
T Consensus 76 ~~~~~lL~~alg~~~a~~il~~~ 98 (108)
T PF14842_consen 76 DFARRLLEKALGEEKAKEILDRL 98 (108)
T ss_dssp HHHHH-HHHHS---HHHHH----
T ss_pred HHHHHHHHHHCCHHHHHHHHHHH
Confidence 78899999999999999999653
No 45
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=27.90 E-value=1.8e+02 Score=24.61 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=46.7
Q ss_pred ccccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhhCCcchhh
Q psy15689 50 MEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKAD 125 (295)
Q Consensus 50 MEp~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD 125 (295)
+.|.=..-|+.|+++.|+--++-+.|-=||--+--..+-+..=|.....+..+...-..+-|+.+..-.-+++-|-
T Consensus 34 L~~E~~~Fi~~Fi~~rGnlKe~e~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~eeA~ 109 (113)
T PF09862_consen 34 LSPEQLEFIKLFIKNRGNLKEMEKELGISYPTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKGEISVEEAL 109 (113)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHCCCcHHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcCCCCHHHHH
Confidence 4566677899999999999999999988876655555544444443111333322333455555555555554443
No 46
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=27.58 E-value=38 Score=29.38 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHH-HH-------HHHhhC-CcchhhhhhccCCCCcHHHHHHhc
Q psy15689 86 ANLVAEWLILGGVNVTEVQAMVENHL-KD-------MILKTF-DPKKADTIFTEEGETPAWLTEMIE 143 (295)
Q Consensus 86 ~nLl~~WL~~~g~~~~ev~~~~e~~L-k~-------li~k~F-Dp~kaD~ift~~g~~p~WL~~MI~ 143 (295)
.+-+..=|...|++++++-......- +. -.+=+| ||..-..-+|+.|.+|.|+.+-|+
T Consensus 58 l~~~r~~m~~~Gis~~eL~~~~~~~~~~~~~kr~~~paKYky~dp~G~~~TWTGrGR~P~wi~~al~ 124 (135)
T PRK10947 58 LQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMD 124 (135)
T ss_pred HHHHHHHHHHcCCCHHHHhcccccccccccccCCCCCCCCcccCCCCCcCcccCCCCCCHHHHHHHH
Confidence 34444556777888888722111100 00 011123 886666799999999999998874
No 47
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=27.46 E-value=80 Score=25.32 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhhhhhHHH
Q psy15689 54 IFSQLKRYFQAGGNPEQVIELLSQNYKAVAQ 84 (295)
Q Consensus 54 i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQ 84 (295)
+-..|.-.+|.|.+|+++|+.|+..-.+-.-
T Consensus 43 i~rliS~~Lr~G~~~~~ii~~L~gi~~~~~~ 73 (95)
T PF12637_consen 43 IARLISLALRSGVPPEEIIDQLRGIRCGPSG 73 (95)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCC
Confidence 3445666778999999999999987665443
No 48
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=27.42 E-value=55 Score=28.06 Aligned_cols=58 Identities=21% Similarity=0.458 Sum_probs=37.5
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHH
Q psy15689 90 AEWLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIY 152 (295)
Q Consensus 90 ~~WL~~~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy 152 (295)
+.|...+|++.+..+.. ..-++.++.+. .-+.+| |+..+..|-.|...| |+.||--++
T Consensus 61 g~wydytG~~~~~r~~~-y~kI~~~~~~~-gf~v~D--~s~~~y~~yfm~D~i-Hlgw~GWv~ 118 (130)
T PF04914_consen 61 GKWYDYTGLSKEMRQEY-YKKIKYQLKSQ-GFNVAD--FSDDEYEPYFMQDTI-HLGWKGWVY 118 (130)
T ss_dssp HHHHHHTT--HHHHHHH-HHHHHHHHHTT-T--EEE---TTGTTSTTSBSSSS-SB-THHHHH
T ss_pred HHHHHHhCCCHHHHHHH-HHHHHHHHHHC-CCEEEe--cccCCCCCceeeecc-cCchhhHHH
Confidence 67999999999998666 45555555432 227777 777788888888877 888886543
No 49
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=26.94 E-value=65 Score=34.88 Aligned_cols=26 Identities=19% Similarity=0.421 Sum_probs=20.8
Q ss_pred HhcChhhHHHHHHHHHhC-CCccchHH
Q psy15689 141 MIEHPTWRSLIYRLAEEY-PDCLMLNF 166 (295)
Q Consensus 141 MI~~~~WR~Liy~LaE~~-p~cl~Lnf 166 (295)
++-+|..|+.+.+|.|++ |+-..|+|
T Consensus 636 ll~s~~~R~~lr~ll~~~~p~l~VLS~ 662 (677)
T TIGR01399 636 LLTSMDIRRYVRKMIESEFPDLPVLSY 662 (677)
T ss_pred EEeCHHHHHHHHHHHHHhCCCCEEecH
Confidence 456788999999998855 88888866
No 50
>KOG1991|consensus
Probab=26.92 E-value=1.1e+02 Score=34.60 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHc--CCCh---HHHHHHHhhhhhhHHHHH
Q psy15689 51 EPGIFSQLKRYFQA--GGNP---EQVIELLSQNYKAVAQMA 86 (295)
Q Consensus 51 Ep~i~~~ik~Y~~~--GG~P---e~vV~~Ls~~Y~G~aQm~ 86 (295)
+.+.|...++++++ .++| +.++..|.+.|++-.|-.
T Consensus 957 ~VD~f~~f~~~i~~lq~~d~~~yq~l~~~L~~~q~~~lq~I 997 (1010)
T KOG1991|consen 957 QVDPFQLFKEAITNLQSSDAVRYQKLISTLTPEQQDSLQTI 997 (1010)
T ss_pred ccchHHHHHHHHHhhhccChHHHHHHHhcCCHHHHHHHHHH
Confidence 66788888888887 4554 889999999999888754
No 51
>COG3747 Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=26.65 E-value=84 Score=28.24 Aligned_cols=52 Identities=15% Similarity=0.363 Sum_probs=39.9
Q ss_pred CCcHHHHHHhcChhhHHHHHHHHHhCCCccchHHHHHHHhhcchhhhhhhhhhHHhHHHHHHHHHHHH
Q psy15689 133 ETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQREITSISTAAQQIEVFSRVLKTS 200 (295)
Q Consensus 133 ~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~LnfaIk~IsdaG~q~EI~sv~taa~~~eVF~rvL~~~ 200 (295)
+.|.||+.. ....||++.=.|+|..+ +-+ .+++-+...|.+++|+-..++..
T Consensus 39 kaPdwLd~~-A~~~Wrrvvp~L~e~~l-----------l~~----~D~~~Le~YC~~ysiY~~av~~l 90 (160)
T COG3747 39 KAPDWLDPT-AKKEWRRVVPFLEELKL-----------LKP----ADLTLLELYCVAYSIYRNAVAHL 90 (160)
T ss_pred CCccccCHH-HHHHHHHHHHHHHHhcc-----------CCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999874 56789999999999764 211 35777888899999987776443
No 52
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=26.48 E-value=3.2e+02 Score=21.45 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q psy15689 55 FSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLK 112 (295)
Q Consensus 55 ~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk 112 (295)
.+.|++|++.+.- .... .|.-++.|+..-+++|++| ++.|.+
T Consensus 5 ~~lL~~yl~~~~E------------~~L~-~~~~~~r~~i~~~I~PEeI---v~iH~~ 46 (77)
T PF08673_consen 5 KDLLREYLETQDE------------QSLY-QAQEFGRELIEKDISPEEI---VEIHKS 46 (77)
T ss_dssp HHHHHHHHHH--H------------HHHH-HHHHHHHHHHHTT--HHHH---HHHHHH
T ss_pred HHHHHHHHhCCCH------------HHHH-HHHHHHHHHHHcCCCHHHH---HHHHHH
Confidence 3457777777652 2223 6889999999999999997 555543
No 53
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=25.97 E-value=98 Score=25.18 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCcchhhhhhcc
Q psy15689 97 GVNVTEVQAMVENHLKDMILKTFDPKKADTIFTE 130 (295)
Q Consensus 97 g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~ 130 (295)
-++..|.+.+++.-|-.++...=||..+|.+|..
T Consensus 23 tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~ 56 (91)
T cd05024 23 YLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKD 56 (91)
T ss_pred cCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHH
Confidence 3688899999999999888888899999999954
No 54
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=25.61 E-value=83 Score=27.57 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCcchhHhhhcCCCCchhHHHHHHHHhcc
Q psy15689 251 RLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISR 293 (295)
Q Consensus 251 rlsqele~~A~~~g~~v~~i~~~L~~~~~yp~~~~a~~sml~~ 293 (295)
.|.+.|-++-.++|+.|.++.. +....||.+..++..-+.+
T Consensus 13 ~lK~~l~~~L~~~G~eV~D~G~--~~~~dYpd~a~~va~~V~~ 53 (142)
T PRK08621 13 ELKEVVKDYLEDNKYEVVDVTE--EGAEDFVDSTLAVAKEVNK 53 (142)
T ss_pred HHHHHHHHHHHHCCCEEEECCC--CCCCCcHHHHHHHHHHHHc
Confidence 4556666666678999988876 4556799988888776644
No 55
>KOG3861|consensus
Probab=25.35 E-value=16 Score=36.50 Aligned_cols=69 Identities=30% Similarity=0.632 Sum_probs=39.9
Q ss_pred cccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCH--HHHHHHHH---------HHHHHHHHhhC
Q psy15689 51 EPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNV--TEVQAMVE---------NHLKDMILKTF 119 (295)
Q Consensus 51 Ep~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~--~ev~~~~e---------~~Lk~li~k~F 119 (295)
--+=|+.||.|+..||+ ++-+|-+ .|.++ +.|+.+++ ..++..-.|.|
T Consensus 66 t~~Efevlkkyve~GGs---l~vllGE------------------GGE~rf~tnvNf~le~YGI~vN~DtVvR~vy~KyF 124 (438)
T KOG3861|consen 66 TEDEFEVLKKYVEVGGS---LVVLLGE------------------GGEPRFNTNVNFFLEQYGIYVNGDTVVRPVYYKYF 124 (438)
T ss_pred chhHHHHHHHHHhcCCe---EEEEecC------------------CCCccccccHHHHHHHhCeEecCCceeehhhhhcc
Confidence 34568899999999887 2222222 23333 44444544 34666778888
Q ss_pred CcchhhhhhccCCCCcHHHHHHhcChhhHHHH
Q psy15689 120 DPKKADTIFTEEGETPAWLTEMIEHPTWRSLI 151 (295)
Q Consensus 120 Dp~kaD~ift~~g~~p~WL~~MI~~~~WR~Li 151 (295)
+||-| ..+.| .+.-.-||.+.
T Consensus 125 hPKEa---lV~~G--------Vvnr~i~raa~ 145 (438)
T KOG3861|consen 125 HPKEA---LVGGG--------VVNRSIWRAAL 145 (438)
T ss_pred ChHHh---hhccc--------eeeHHHHHHHH
Confidence 88865 33333 23445677654
No 56
>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=25.30 E-value=64 Score=28.79 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHHhCCCccc
Q psy15689 108 ENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLM 163 (295)
Q Consensus 108 e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~ 163 (295)
|+.+..++.-.|.+....-..+.+. .| ..-.+....|+.+|=+|+++|||..|
T Consensus 8 e~~~nSa~~~~~~ag~l~~~it~~~-~p--~~~~LnT~~~~~~iP~l~~~yPn~~~ 60 (200)
T cd00026 8 EHVFNSAALVYFQAGALNLLLTDDM-PP--SKSRLTTSIFGIFIPELAKKYPNMPQ 60 (200)
T ss_pred HHHHhHHHHHHhhCCeEEEEEeCCc-CC--cccccchhHHHHHHHHHHHHCCCCcE
Confidence 4556667777777777777776642 33 55667788999999999999999653
No 57
>PRK00855 argininosuccinate lyase; Provisional
Probab=25.05 E-value=3.7e+02 Score=27.24 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHhcCCCcchhHh
Q psy15689 227 HTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIM 272 (295)
Q Consensus 227 hTYlyaQ~lL~~L~~~~~g~~~~~rlsqele~~A~~~g~~v~~i~~ 272 (295)
..|..+..+...|.+..-+...+.++..++-+.|.+.|.++.++..
T Consensus 364 ~~~~~at~la~~Lv~~gi~~r~Ah~~v~~~~~~a~~~g~~~~~~~~ 409 (459)
T PRK00855 364 KGFSTATDLADYLVRKGVPFREAHEIVGKAVREAEERGVDLADLSL 409 (459)
T ss_pred cchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHhH
Confidence 7799999999999887334556666777777777777776555543
No 58
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=24.26 E-value=3.8e+02 Score=21.57 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=5.9
Q ss_pred hhCCcchhhhhh
Q psy15689 117 KTFDPKKADTIF 128 (295)
Q Consensus 117 k~FDp~kaD~if 128 (295)
.+||+++|-.+.
T Consensus 68 ~~yd~~~~~~~c 79 (140)
T smart00299 68 NHYDIEKVGKLC 79 (140)
T ss_pred ccCCHHHHHHHH
Confidence 345555554444
No 59
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=24.26 E-value=36 Score=30.30 Aligned_cols=20 Identities=35% Similarity=0.851 Sum_probs=11.9
Q ss_pred ccccccHHHHHHHHHHcCCC
Q psy15689 48 YIMEPGIFSQLKRYFQAGGN 67 (295)
Q Consensus 48 aIMEp~i~~~ik~Y~~~GG~ 67 (295)
++|.|.....|++|+++||.
T Consensus 67 ~~l~~~~~~~L~~yV~~GG~ 86 (207)
T PF08532_consen 67 YILSPEFAERLRAYVENGGT 86 (207)
T ss_dssp SC--HHH---HHHHHT-SS-
T ss_pred EEEChHHHHHHHHHHHCCCE
Confidence 56889999999999999996
No 60
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.25 E-value=6.9e+02 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.036 Sum_probs=18.0
Q ss_pred CcHHHHHHhc-ChhhHHHHHHHHHhCCCccchHH
Q psy15689 134 TPAWLTEMIE-HPTWRSLIYRLAEEYPDCLMLNF 166 (295)
Q Consensus 134 ~p~WL~~MI~-~~~WR~Liy~LaE~~p~cl~Lnf 166 (295)
...++++|.+ ...|..++=.|+.-+.|-+++++
T Consensus 264 ~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~ 297 (527)
T PRK14969 264 LLAIADAMEERSLSFDAALQDLAALLHRLAIAQT 297 (527)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhc
Confidence 3345566665 34566666666555555444443
No 61
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=24.08 E-value=52 Score=29.32 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH---HhcCCCcchhHhhhcCCCCchhHHHH----HHHHhccC
Q psy15689 250 KRLAQEITKCA---QQSGHDVTPIIMALNGAAFYPQANQA----LSSMISRN 294 (295)
Q Consensus 250 ~rlsqele~~A---~~~g~~v~~i~~~L~~~~~yp~~~~a----~~sml~~~ 294 (295)
+.-.+|||+.. +++|+..+.|.+.|...+.-|++..+ |+.||..|
T Consensus 27 ~~~~eeve~~I~~lakkG~~pSqIG~~LRD~~gip~Vk~vtG~ki~~iLk~~ 78 (151)
T PRK08561 27 DYSPEEIEELVVELAKQGYSPSMIGIILRDQYGIPDVKLITGKKITEILEEN 78 (151)
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhhHhhccCCCceeeeccchHHHHHHHc
Confidence 33456666654 57899999999999999888888766 66666554
No 62
>PF05139 Erythro_esteras: Erythromycin esterase; InterPro: IPR007815 This family includes erythromycin esterase enzymes [, ] that confer resistance to the erythromycin antibiotic.; GO: 0046677 response to antibiotic; PDB: 2QGM_A 3B55_A 2RAD_B.
Probab=24.05 E-value=53 Score=31.16 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=29.7
Q ss_pred cccccHHHH--HHHHHHcC-CChH-HHHHHHhhhhhhHHHHHHHHHHHHHhhC
Q psy15689 49 IMEPGIFSQ--LKRYFQAG-GNPE-QVIELLSQNYKAVAQMANLVAEWLILGG 97 (295)
Q Consensus 49 IMEp~i~~~--ik~Y~~~G-G~Pe-~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g 97 (295)
.||.+.-+. |.+|++.| |+|. .++.-++-+.=.-.+|..|+ +||+...
T Consensus 3 a~E~~~~~~~~vn~yv~~g~gd~~~~~~~~~~~~~w~t~E~~~L~-~WmR~~N 54 (346)
T PF05139_consen 3 AFESDFGDALRVNDYVRGGSGDPRDEALKGFSFWFWRTEEMLDLF-EWMREYN 54 (346)
T ss_dssp EEEEEHHHHHHHHHHHHHS-S-GG-----GTS-CCC-CHHHHHHH-HHHHHHH
T ss_pred EEecCcHHHHHHHHHHhCCCCCcccchhccCCccccCcHHHHHHH-HHHHHHh
Confidence 356666655 56999998 8887 66666665555667888887 8988753
No 63
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=23.89 E-value=1.1e+02 Score=27.63 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhCCCH-----HHHHHHHHHHHH---------HHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhh
Q psy15689 82 VAQMANLVAEWLILGGVNV-----TEVQAMVENHLK---------DMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTW 147 (295)
Q Consensus 82 ~aQm~nLl~~WL~~~g~~~-----~ev~~~~e~~Lk---------~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~W 147 (295)
+-+|..-|+.||.++|.+. .+..++++-..| .-+.+++ .....+||..+.+.++||-+.++--.
T Consensus 11 vD~mLG~LARwLRllGydt~~~~~~~d~~i~~i~~~e~rIllTRDr~L~~r~-k~g~~~i~i~~~s~~~Ql~e~~~~~~- 88 (165)
T COG1656 11 VDAMLGKLARWLRLLGYDTVYSSNESDDEIILIAKKEGRILLTRDRELYKRA-KLGIKAILIRSDSIEEQLAEFLARLG- 88 (165)
T ss_pred HHHhHHHHHHHHHHcCCceeeeccCCcHHHHHHHhcCCeEEEeccHHHHHHh-hccCceEEEeCCCHHHHHHHHHHHhc-
Confidence 3579999999999999843 222223332232 2345556 66788999999999999988853111
Q ss_pred HHHHHHHHHhCCCccchHHHHHHHhh
Q psy15689 148 RSLIYRLAEEYPDCLMLNFTIKLISD 173 (295)
Q Consensus 148 R~Liy~LaE~~p~cl~LnfaIk~Isd 173 (295)
+.-.|..+.-.|+-.|--+..+|.
T Consensus 89 --l~~~~~~e~~RCp~CN~~L~~vs~ 112 (165)
T COG1656 89 --LKPRLFPEFSRCPECNGELEKVSR 112 (165)
T ss_pred --cchhcccccccCcccCCEeccCcH
Confidence 111345567788888887777776
No 64
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=23.75 E-value=3.1e+02 Score=20.49 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=37.5
Q ss_pred CChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHh
Q psy15689 66 GNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMILK 117 (295)
Q Consensus 66 G~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li~k 117 (295)
++++.+.+-|.+-+.-..++|+.+-. ..|++.+++ +..+.+++.+.
T Consensus 24 ~~~~~l~eElgDvl~~l~~la~~~~~---~~~idle~~---~~~~~~K~~~R 69 (74)
T PF03819_consen 24 EDRENLEEELGDVLFYLLQLARILEE---RLGIDLEEA---LERKMEKLERR 69 (74)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHC---HTTSHHHHH---HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhH---cCCCCHHHH---HHHHHHHHhcc
Confidence 88899999999999999999988776 456777774 77788777654
No 65
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.73 E-value=2.5e+02 Score=22.27 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=25.8
Q ss_pred CCcHHHHHHh-cChhhHHHHHHHHHhCCCccchHHHHHHHhhcc
Q psy15689 133 ETPAWLTEMI-EHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAG 175 (295)
Q Consensus 133 ~~p~WL~~MI-~~~~WR~Liy~LaE~~p~cl~LnfaIk~IsdaG 175 (295)
..+..+++++ -+..||.+++++-+-.-.-=-++-.|.....+|
T Consensus 23 ~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 23 GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 3455666666 368899999999552222223455555555565
No 66
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=23.65 E-value=35 Score=29.63 Aligned_cols=28 Identities=29% Similarity=0.684 Sum_probs=22.1
Q ss_pred hhCCcchhhhhhccCCCCcHHHHHHhcC
Q psy15689 117 KTFDPKKADTIFTEEGETPAWLTEMIEH 144 (295)
Q Consensus 117 k~FDp~kaD~ift~~g~~p~WL~~MI~~ 144 (295)
+.+|+++-=..+|..|.+|+||..-+..
T Consensus 91 ~~~~~n~eg~TWTGrGR~P~wI~kAl~~ 118 (128)
T COG2916 91 KYYDENGEGKTWTGRGRTPAWIGKALDE 118 (128)
T ss_pred CeecCCCCCCcccCCCCCcHHHHHHHHc
Confidence 3456666678899999999999987755
No 67
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=23.59 E-value=1.4e+02 Score=22.83 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHH----------------HHHhhCCcchhhhhhccC
Q psy15689 88 LVAEWLILGGVNVTEVQAMVENHLKD----------------MILKTFDPKKADTIFTEE 131 (295)
Q Consensus 88 Ll~~WL~~~g~~~~ev~~~~e~~Lk~----------------li~k~FDp~kaD~ift~~ 131 (295)
-+.-+|...|++.++-++++..+..+ .|.+.|+++..+.+|.-.
T Consensus 8 ~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~~l~e~l~~d~~i~~~ls~~el~~l~dp~ 67 (81)
T PF10397_consen 8 RVMLALAEKGLGRQEAHELVQEAAMEAWENGRDLREVLLADPEIAAYLSEEELEELFDPE 67 (81)
T ss_dssp HHHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS-HHHHHCTTHHHHTTSHHHHHHHHT-GG
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHhHCCHHHHHhhcCHH
Confidence 34456667788888887776644332 245667777777777443
No 68
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.43 E-value=8.2e+02 Score=25.12 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHcCC--ChHHHHHHHhhhhh-hHHHHHHHHHHHHHhhC--CCHHHHHHHHH----HHHHHHHHhhCCcc
Q psy15689 52 PGIFSQLKRYFQAGG--NPEQVIELLSQNYK-AVAQMANLVAEWLILGG--VNVTEVQAMVE----NHLKDMILKTFDPK 122 (295)
Q Consensus 52 p~i~~~ik~Y~~~GG--~Pe~vV~~Ls~~Y~-G~aQm~nLl~~WL~~~g--~~~~ev~~~~e----~~Lk~li~k~FDp~ 122 (295)
+.+...+++..+..| =+++++.+|++... +.....|+|..-....+ ++.+.|++++. +.+.+++..
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~s----- 253 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINA----- 253 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH-----
Confidence 445556666666555 34677777777444 44556666665333333 45555554442 233333222
Q ss_pred hhhhhhccCC-CCcHHHHHHhcC---hh--hHHHHHHHHHhC
Q psy15689 123 KADTIFTEEG-ETPAWLTEMIEH---PT--WRSLIYRLAEEY 158 (295)
Q Consensus 123 kaD~ift~~g-~~p~WL~~MI~~---~~--WR~Liy~LaE~~ 158 (295)
|..+.- ..-.||..|+.. |. .|+|+..+.|.-
T Consensus 254 ----i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi 291 (472)
T PRK14962 254 ----IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDL 291 (472)
T ss_pred ----HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 221111 344688888754 32 788888877743
No 69
>PRK12708 flgJ peptidoglycan hydrolase; Reviewed
Probab=23.37 E-value=2.7e+02 Score=24.37 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=47.2
Q ss_pred hhhhhhHHhHHH-HHHHHHHHHHHHhhc------C------chhHHHHH-HHHHHhhhccchhHHHHHHHHHHHhccCCc
Q psy15689 180 ITSISTAAQQIE-VFSRVLKTSISNFLE------S------SDDWQSSV-EECAKMVCHGQHTYVYSQVLLQVLSLESKG 245 (295)
Q Consensus 180 I~sv~taa~~~e-VF~rvL~~~l~~~~~------~------~d~~~~~~-~el~km~C~sehTYlyaQ~lL~~L~~~~~g 245 (295)
=.++..||++|| +|...+..+...... + ++-++..+ .++++....+ .+.=.|..|.+-|+...++
T Consensus 25 ~~aL~~aAqQFEAlFlq~MLKsMR~a~~~l~~~d~~f~s~~~~~y~dM~DqqlA~~mA~~-ggiGLAd~l~rQLs~~~~~ 103 (134)
T PRK12708 25 QGALKLAAQQFEAQFLQTVLKQMRSASDVMADEDDPFNSKNQGMYRDFYDAELASRLSSQ-RSMGLAEVMIKQLSSKLKS 103 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHhhhhccC
Confidence 344566898887 787777666665431 1 12234433 2344333332 2333455555555544444
Q ss_pred h-hHHHHHHHHHHHHHHhcCCCcchh
Q psy15689 246 G-SKVKRLAQEITKCAQQSGHDVTPI 270 (295)
Q Consensus 246 ~-~~~~rlsqele~~A~~~g~~v~~i 270 (295)
+ -.+..-+|-|++++.+--..|.||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (134)
T PRK12708 104 APEVVALESQTLTTTAMQPALIVPPI 129 (134)
T ss_pred CccchhhhhhhhhhcccccccccCcc
Confidence 2 245556666766666655555554
No 70
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=23.16 E-value=1.5e+02 Score=32.15 Aligned_cols=105 Identities=15% Similarity=0.244 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHH---HHHhhCCCHHHHHHHHHHHHHHHHHhh-------CCc
Q psy15689 52 PGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAE---WLILGGVNVTEVQAMVENHLKDMILKT-------FDP 121 (295)
Q Consensus 52 p~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~---WL~~~g~~~~ev~~~~e~~Lk~li~k~-------FDp 121 (295)
+.|+.+|-++-+...+|..++|+--..-. .|+|.-+.+ +|.....+++ +|+.+.+-+++. .||
T Consensus 534 ~tIlE~l~d~~~~~kd~~~LtE~VR~~L~--r~I~~~~~~~~~~l~vi~l~p~-----~E~~l~~~i~~~~~g~~~~l~P 606 (675)
T PRK12720 534 RTIFGTLVEWAPREKDVVMLTEYVRIALR--RHILRRFNHEGKWLPVLRIGEG-----IENLIRESIRQTSAGTYSALSS 606 (675)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHH--HHHHHHhcCCCCeeEEEEeCHH-----HHHHHHHHHhcccCCCccccCH
Confidence 34555555665555565544444332221 234443332 3333333332 244444444432 557
Q ss_pred chhhhhhccCCCCcHHH-----HHHhcChhhHHHHHHHHHhC-CCccchHH
Q psy15689 122 KKADTIFTEEGETPAWL-----TEMIEHPTWRSLIYRLAEEY-PDCLMLNF 166 (295)
Q Consensus 122 ~kaD~ift~~g~~p~WL-----~~MI~~~~WR~Liy~LaE~~-p~cl~Lnf 166 (295)
+.+..+...-. +=+ .-++-+|..|+.+.+|.|++ |+...|+|
T Consensus 607 ~~~~~l~~~~~---~~~~~~~~pVllts~~iR~~lr~li~~~~p~l~VLS~ 654 (675)
T PRK12720 607 RHSTQILQLIE---QALKQSQKLVLVTSVDVRRFLRKIIERTLFDLPVLSW 654 (675)
T ss_pred HHHHHHHHHHH---HHHHccCCcEEEeCHHHHHHHHHHHHHhCCCCEEeCH
Confidence 66666654322 111 12456889999999999965 99888876
No 71
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=22.99 E-value=6.8e+02 Score=24.01 Aligned_cols=180 Identities=17% Similarity=0.238 Sum_probs=84.2
Q ss_pred ccHHHHHHHHHHc--CCChHHHHHHHhhhhhhHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHH--HHHHhhCCcchhhh
Q psy15689 52 PGIFSQLKRYFQA--GGNPEQVIELLSQNYKAVAQMANLVAEWLILG-GVNVTEVQAMVENHLK--DMILKTFDPKKADT 126 (295)
Q Consensus 52 p~i~~~ik~Y~~~--GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~-g~~~~ev~~~~e~~Lk--~li~k~FDp~kaD~ 126 (295)
.++...|++||.. |.+|.. |.-.-.-.+-+..=+... ..+.+-+.. +..+.. ..+.++| |.+..
T Consensus 13 vd~~~~l~~~i~~~y~~~~~~--------~~~~l~~l~~lR~~~~~~~~~~~~~~~~-l~~Y~~~L~~l~~~~-p~~~~- 81 (377)
T PF03097_consen 13 VDLKKPLKKYISSHYGEDPDS--------FDEDLKELDKLRQDARNPQSPSESGLKL-LEEYYPQLESLEKRF-PSDQI- 81 (377)
T ss_dssp E-CHHHHHHHHHHHCSSCCHC--------CHHHHHHHHHHHHHHHTSS-SSHHHHHH-HHHHHHHHHHHCCCS-CSSCC-
T ss_pred CCHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHHHHHHHhccCCCchhHHHH-HHHHHHHHHHHHHhc-ccccc-
Confidence 4566778888877 666654 333333334445545544 444455444 444444 3467888 42211
Q ss_pred hhccCCCCcHHHHHHhcCh--hhHHHHHHHHHhCCCccchHHHHHHHhhcchh--hhhhhhhhHHhHHHHHHHHHHHHHH
Q psy15689 127 IFTEEGETPAWLTEMIEHP--TWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQ--REITSISTAAQQIEVFSRVLKTSIS 202 (295)
Q Consensus 127 ift~~g~~p~WL~~MI~~~--~WR~Liy~LaE~~p~cl~LnfaIk~IsdaG~q--~EI~sv~taa~~~eVF~rvL~~~l~ 202 (295)
+-...|-+.+-... .=.++-|+++ |.+.|.++=+-.-|-.+ ....++..|++.|.-=..++...-.
T Consensus 82 -----~i~F~W~d~~~~~~~~~~~~~~fE~a-----~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~ 151 (377)
T PF03097_consen 82 -----QISFTWSDSLSTGKPVSQSSLAFEKA-----CVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRE 151 (377)
T ss_dssp -----TT-EEEE-TTSTTSEEEESSHHHHHH-----HHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----eeeEeeeccccCCCcccchhhHHHHH-----HHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 12455655542111 1123455555 66667766444333332 2344556677777655555544433
Q ss_pred HhhcC-chhHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q psy15689 203 NFLES-SDDWQSSVEECAKMVCHGQ-HTYVYSQVLLQVLSLESKGGSKVKRLAQEIT 257 (295)
Q Consensus 203 ~~~~~-~d~~~~~~~el~km~C~se-hTYlyaQ~lL~~L~~~~~g~~~~~rlsqele 257 (295)
.+... +.++...+-.+....|.+| |--.|-.++. +..+...+.+|+.++-
T Consensus 152 ~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~-----~~~~~~liAKLa~~~~ 203 (377)
T PF03097_consen 152 NFKDSPSPDLSPEVLSALSNLMLAQAQECFYEKAIA-----DKKKPSLIAKLAAQAS 203 (377)
T ss_dssp HSSS-SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-----TTG-HHHHHHHHHHHH
T ss_pred hhcccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-----ccCchHHHHHHHHHHH
Confidence 43333 4456544444444444444 3333333333 2333345555555443
No 72
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=22.85 E-value=4.6e+02 Score=21.96 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCccccccHHHHHHHHHHcCC-ChHHHHHHHhhhh--------hhHHHHHHHHHHHHHhhCCCHHHHHHH
Q psy15689 36 LNECLEKFSTPDYIMEPGIFSQLKRYFQAGG-NPEQVIELLSQNY--------KAVAQMANLVAEWLILGGVNVTEVQAM 106 (295)
Q Consensus 36 ~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG-~Pe~vV~~Ls~~Y--------~G~aQm~nLl~~WL~~~g~~~~ev~~~ 106 (295)
++.+.+.|...+-.-.+.+....++-|+.|| +=+-||-+++=+| +|.......+++|+. +.
T Consensus 54 f~~~~~~l~~~~~~~~~~f~~v~~~lf~dg~inWGRIval~~f~~~la~~~~~~~~~~~v~~i~~~~~----------~f 123 (144)
T cd06845 54 FENMCRQLNISPDNAYEVFQEVARELFEDGGINWGRIVALFAFGGRLAVKCVEQGLPELVRSIAEWTS----------DF 123 (144)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH----------HH
Confidence 3444444443333344455556667777755 5577777766444 233444444444443 34
Q ss_pred HHHHHHHHHHhh
Q psy15689 107 VENHLKDMILKT 118 (295)
Q Consensus 107 ~e~~Lk~li~k~ 118 (295)
+.+++.++|.++
T Consensus 124 i~~~~~~WI~~~ 135 (144)
T cd06845 124 LEENLADWIQEN 135 (144)
T ss_pred HHHHHHHHHHHc
Confidence 556667777664
No 73
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.51 E-value=7.8e+02 Score=26.53 Aligned_cols=63 Identities=17% Similarity=0.393 Sum_probs=39.8
Q ss_pred CCcHHHHHHhcChhhHHHHHHHHHhCCCccchHHHHHHHhh-cchhhhhhhhhh-HHhHHHHHHHHHH
Q psy15689 133 ETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISD-AGFQREITSIST-AAQQIEVFSRVLK 198 (295)
Q Consensus 133 ~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~LnfaIk~Isd-aG~q~EI~sv~t-aa~~~eVF~rvL~ 198 (295)
..|.||-.++++|-+.+|+=.|--. .+-..|+.|+..|.- --+. =.+++. .-.-|.||.|++.
T Consensus 98 ~qp~~l~~i~~t~Lf~~LLk~L~~D-~~~~~~~~al~~LimlLP~i--p~~l~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 98 SQPPWLYKILQTPLFKSLLKCLQFD-TSITVVSSALLVLIMLLPHI--PSSLGPHLPDLFNIFGRLLS 162 (668)
T ss_pred cCCchHHHHhcChhHHHHHHHHhhc-ccHHHHHHHHHHHHHHhccc--cchhhHHHHHHHHHHHHHHH
Confidence 5899999999999999999888432 233333344433321 1111 113333 5688899999883
No 74
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=22.50 E-value=98 Score=27.67 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---hhCCcchhhhhhccCCCCcHHHHH
Q psy15689 84 QMANLVAEWLILGGVNVTEVQAMVENHLKDMIL---KTFDPKKADTIFTEEGETPAWLTE 140 (295)
Q Consensus 84 Qm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li~---k~FDp~kaD~ift~~g~~p~WL~~ 140 (295)
+...-+..++..-..+.+++++.+...++..-. ..|+++-++.|...++..|-++..
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~ 237 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINI 237 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHH
Confidence 344444556667778889988888888875532 258888888888888777766544
No 75
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=22.38 E-value=4e+02 Score=24.59 Aligned_cols=31 Identities=3% Similarity=0.026 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q psy15689 82 VAQMANLVAEWLILGGVNVTEVQAMVENHLK 112 (295)
Q Consensus 82 ~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk 112 (295)
++.++.-+.+|....|+++++..+++..-++
T Consensus 181 ~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~ 211 (279)
T PRK07679 181 IYYVVEAMEKAAKKIGLKEDVAKSLILQTMI 211 (279)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6778888999999999999998888776554
No 76
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=22.37 E-value=1.1e+02 Score=26.88 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCcchhHhhhcCCCCchhHHHHHHHHhcc
Q psy15689 250 KRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISR 293 (295)
Q Consensus 250 ~rlsqele~~A~~~g~~v~~i~~~L~~~~~yp~~~~a~~sml~~ 293 (295)
-.|.++|-++-.++|+.|.++.. +.+..||.+...+..-+.+
T Consensus 12 ~~lK~~i~~~L~~~G~eV~D~G~--~~~~dYpd~a~~va~~V~~ 53 (141)
T TIGR01118 12 KRLKDVIKNFLVDNGFEVIDVTE--GDGQDFVDVTLAVASEVQK 53 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCC--CCCCCcHHHHHHHHHHHHc
Confidence 34566777777789999988876 4567899888877665543
No 77
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.23 E-value=1.6e+02 Score=28.80 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=14.5
Q ss_pred ccccHHHHHHHHHHc-----CCC
Q psy15689 50 MEPGIFSQLKRYFQA-----GGN 67 (295)
Q Consensus 50 MEp~i~~~ik~Y~~~-----GG~ 67 (295)
+.|.++..|+++..- ||+
T Consensus 191 L~~~~L~~i~~~~~~PlVlHGgS 213 (286)
T COG0191 191 LDFDRLKEIQEAVSLPLVLHGGS 213 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeCCC
Confidence 778889999998775 776
No 78
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=21.97 E-value=6.5e+02 Score=23.42 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=54.6
Q ss_pred ccccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-----------------
Q psy15689 50 MEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVENHLK----------------- 112 (295)
Q Consensus 50 MEp~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk----------------- 112 (295)
-++++...+.+|++.-...+.+. ......+..++.. ++.+.+.+.+...++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~--~~~~~i~~~i~~~~~~~l~~~~~~~~~~~~l~ 132 (367)
T PF04286_consen 65 ESEDFSERLIEWLQDPENREKLR----------RILAELLEEILEK--IDQEKIAEFIEKNLRKKLSEIILAPLLQKLLR 132 (367)
T ss_pred hcccHHHHHHHHHhchhhhHHHH----------HHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 34667778888888544444442 2333333444432 233334334333333
Q ss_pred HHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHH----hCCCccchHHHHHHHhhc--chhhhhh
Q psy15689 113 DMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAE----EYPDCLMLNFTIKLISDA--GFQREIT 181 (295)
Q Consensus 113 ~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE----~~p~cl~LnfaIk~Isda--G~q~EI~ 181 (295)
.++.+....+..|.+. ..+...++++.-+..|.++.+ ++-...+.+-..+.|.+. ++.+++.
T Consensus 133 ~ll~~~~~~~l~~~il-------~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~~~~~~l~~~i~~~l~~~l~~l~ 200 (367)
T PF04286_consen 133 SLLEEEQHQKLLDRIL-------EKIKEYLKSEETRERIRDLIEEFLEEYLGKSFLDKLAEKIQDELDSLLEKLQ 200 (367)
T ss_pred HHHhccchHHHHHHHH-------HHHHHHHcCchHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 3333333334444433 445566678877766666644 553333344444444432 3444444
No 79
>KOG1684|consensus
Probab=21.82 E-value=2.2e+02 Score=29.12 Aligned_cols=60 Identities=32% Similarity=0.558 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHhcCCC---CccccccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy15689 29 MENPQEVLNECLEKFSTP---DYIMEPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLI 94 (295)
Q Consensus 29 ~e~~~~~~~e~~~~l~~~---DaIMEp~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~ 94 (295)
-++|+.+++++++.+..+ +.-.-+..++.|.++|.+. +.|++|+-|- +|++ .+-..+|-.
T Consensus 237 ~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~-tVeeIie~lk-~~q~----~~~~~ewak 299 (401)
T KOG1684|consen 237 NDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSAN-TVEEIIEALK-NYQQ----SADGSEWAK 299 (401)
T ss_pred CCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccc-cHHHHHHHHH-HHhh----hhhHHHHHH
Confidence 346778888888888766 3334445889999999666 7788877552 3443 566667744
No 80
>PRK04833 argininosuccinate lyase; Provisional
Probab=21.48 E-value=5.4e+02 Score=26.17 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHhcCCCcchh
Q psy15689 227 HTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPI 270 (295)
Q Consensus 227 hTYlyaQ~lL~~L~~~~~g~~~~~rlsqele~~A~~~g~~v~~i 270 (295)
..|.++..+...|.++.-+..-++++-.++-+.|...|.+..++
T Consensus 362 ~g~~~a~~~a~~L~~~g~~~r~Ah~~v~~~~~~a~~~~~~~~~~ 405 (455)
T PRK04833 362 QGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDL 405 (455)
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhc
Confidence 48999999999999875566777888887777787777655444
No 81
>PRK15337 type III secretion system protein InvA; Provisional
Probab=21.32 E-value=1.7e+02 Score=31.88 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=20.8
Q ss_pred HhcChhhHHHHHHHHHhC-CCccchHH
Q psy15689 141 MIEHPTWRSLIYRLAEEY-PDCLMLNF 166 (295)
Q Consensus 141 MI~~~~WR~Liy~LaE~~-p~cl~Lnf 166 (295)
++-+|..|+.+.+|.|++ |+-..|+|
T Consensus 645 ll~s~~iR~~lr~l~e~~~p~l~VLS~ 671 (686)
T PRK15337 645 LLVSVDIRRFVKKLIEGRFPELEVLSF 671 (686)
T ss_pred EEcCHHHHHHHHHHHHHhCCCCEEeCH
Confidence 456788999999998865 88888866
No 82
>PF10188 Oscp1: Organic solute transport protein 1; InterPro: IPR019332 Organic solute carrier protein 1, or Oscp1, is a family of proteins conserved from plants to humans. It is called organic solute transport protein or oxido-red-nitro domain-containing protein 1, however no reference could be find to confirm the function of the protein.
Probab=21.20 E-value=1.2e+02 Score=27.57 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=38.5
Q ss_pred HHhhCCCHHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHH
Q psy15689 93 LILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAE 156 (295)
Q Consensus 93 L~~~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE 156 (295)
|+--+++.+- -...|++.+...|+|+-.|.+|.. .. |..++.=|.++-+||.
T Consensus 9 L~AQ~i~~dk----s~kVl~Div~~mf~~~fl~eLfkP-----q~---lys~~~~r~~f~~lah 60 (173)
T PF10188_consen 9 LKAQNIPEDK----SAKVLNDIVTTMFNPKFLDELFKP-----QP---LYSKKALRTVFEKLAH 60 (173)
T ss_pred HhhcCCCHHH----HHHHHHHHHHHHcCHHHHHHHcCC-----cc---ccCHHHHHHHHHHHHh
Confidence 3333444443 356899999999999999999944 32 6677778888888876
No 83
>PF05183 RdRP: RNA dependent RNA polymerase; InterPro: IPR007855 This entry represents various eukaryotic RNA-dependent RNA polymerases (RDRP; 2.7.7.48 from EC), such as RCRP-1, RDRP-2 and RDRP-6. These enzymes are involved in the amplification of regulatory microRNAs during post-transcriptional gene silencing []; they are also required for transcriptional gene silencing. Double-stranded RNA has been shown to induce gene silencing in diverse eukaryotes and by a variety of pathways []. These enzymes also play a role in the RNA interference (RNAi) pathway, which is important for heterochromatin formation, accurate chromosome segregation, centromere cohesion and telomere function during mitosis and meiosis. RDRP enzymes are highly conserved in most eukaryotes, but are missing in archaea and bacteria. The core catalytic domain of RDRP enzymes is structurally similar to the beta' subunit of DNA-dependent RNA polymerases (DDRP), however the other domains of DDRP show no similarity to those of RDRP.; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2J7O_A 2J7N_A.
Probab=21.16 E-value=1.9e+02 Score=29.83 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=50.6
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHhhCCcchhhhhhccCC-CCcHHHHH---------HhcChhhHHHHHHHHH
Q psy15689 92 WLILGGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEG-ETPAWLTE---------MIEHPTWRSLIYRLAE 156 (295)
Q Consensus 92 WL~~~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~g-~~p~WL~~---------MI~~~~WR~Liy~LaE 156 (295)
=|...|++.+...++.+.+|+++..-.-|++.+-.++.... .....+.. +.++|.+|+++..+..
T Consensus 241 iL~~~gv~~~~f~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~g~~~~~~pfl~~~l~~~~~ 315 (579)
T PF05183_consen 241 ILEDLGVPDEVFLELQDEALEELRNILTDPDAARDLLSNQSRDGDFRLIRRQLLDAGFDPLNDPFLRSLLKALIK 315 (579)
T ss_dssp HHHHTBSS-HHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHS--HHHHHHHTHHHHTT--TTTBHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhcCCCcchhHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 45667999999999999999999998999988888887766 45555542 6799999999988754
No 84
>PF13556 HTH_30: PucR C-terminal helix-turn-helix domain; PDB: 3ONQ_B.
Probab=20.90 E-value=3.3e+02 Score=19.57 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHH
Q psy15689 55 FSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEV 103 (295)
Q Consensus 55 ~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev 103 (295)
..+++.|+++||+..++-+.|-=++.-+..=.+-+.+ .+|.+..+.
T Consensus 2 ~~TL~~yl~~~~n~~~tA~~L~iHrNTl~yRl~ki~~---l~g~dl~~~ 47 (59)
T PF13556_consen 2 LETLRAYLENNGNISKTARALHIHRNTLRYRLKKIEE---LLGLDLDDP 47 (59)
T ss_dssp --HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHH---HHS--TTSH
T ss_pred hhHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH---HHCcCCCCH
Confidence 5789999999999999999887777665554444333 345554443
No 85
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=20.88 E-value=2.3e+02 Score=30.84 Aligned_cols=105 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHH---HHHhhCCCHHHHHHHHHHHHHHHHHhh-------CCc
Q psy15689 52 PGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAE---WLILGGVNVTEVQAMVENHLKDMILKT-------FDP 121 (295)
Q Consensus 52 p~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~---WL~~~g~~~~ev~~~~e~~Lk~li~k~-------FDp 121 (295)
+.|+.+|-+|-+...+|..++|+--..-. .|+|.-+.. ||.....+++ +|+.+.+-+.+. .||
T Consensus 555 ~tIlEaLad~a~~~kD~~~LtE~VR~aL~--RqI~~~~~~~~g~L~vi~L~p~-----lE~~l~~si~~t~~g~~laLdP 627 (697)
T PRK06012 555 RTILETLADYAPITKDPDELTEHVRQRLG--RQIVQQYKGEDGELPVITLDPE-----LEQLLLQSLQGTGGGSYLALEP 627 (697)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHH--HHHHHHhcCCCCeeEEEEECHH-----HHHHHHHHHhhccCCCccCcCH
Q ss_pred chhhhhhccCCCCcHHHHHH---------hcChhhHHHHHHHHHhC-CCccchHH
Q psy15689 122 KKADTIFTEEGETPAWLTEM---------IEHPTWRSLIYRLAEEY-PDCLMLNF 166 (295)
Q Consensus 122 ~kaD~ift~~g~~p~WL~~M---------I~~~~WR~Liy~LaE~~-p~cl~Lnf 166 (295)
+.+..+..+ ..+=+.++ +-+|..|+.+-+|.|++ |+-..|+|
T Consensus 628 ~~~~~li~~---l~~~~~~~~~~g~~pVLLtS~~iRr~lr~lie~~~p~L~VLS~ 679 (697)
T PRK06012 628 GLAERLLQS---LQEALERQEMKGEPPVLLVSPALRPYLRRLLERFLPQLPVLSY 679 (697)
T ss_pred HHHHHHHHH---HHHHHHHHHhcCCCeEEEcCHHHHHHHHHHHHHhCCCCEEecH
No 86
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=20.85 E-value=1.1e+02 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCcchhHhhhcCCCCchhHHHHHHHHhcc
Q psy15689 250 KRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISR 293 (295)
Q Consensus 250 ~rlsqele~~A~~~g~~v~~i~~~L~~~~~yp~~~~a~~sml~~ 293 (295)
-.|.++|-++-.++|+.|.++.. .+..||.+...+...+.+
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D~G~---~~~dypd~a~~va~~V~~ 52 (141)
T PRK12613 12 NALKELIKSFLQEEGYDIIDVTD---INSDFIDNTLAVAKAVNE 52 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCC---CCCChHHHHHHHHHHHHc
Confidence 34667777788889999988875 346899988888776654
No 87
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=20.84 E-value=78 Score=34.40 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=21.7
Q ss_pred HhcChhhHHHHHHHHHhC-CCccchHHH
Q psy15689 141 MIEHPTWRSLIYRLAEEY-PDCLMLNFT 167 (295)
Q Consensus 141 MI~~~~WR~Liy~LaE~~-p~cl~Lnfa 167 (295)
++-+|..|+.+.+|.|++ |+...|+|.
T Consensus 652 ll~s~~iR~~lr~ll~~~~p~l~VLS~~ 679 (694)
T PRK12792 652 LVTAPEARPYVRMIIERLFPTLPVLSHL 679 (694)
T ss_pred EEcCHHHHHHHHHHHHHhCCCCEEechh
Confidence 456788999999999964 999888763
No 88
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=20.63 E-value=1.3e+02 Score=19.64 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q psy15689 56 SQLKRYFQAGGNPEQVIELL 75 (295)
Q Consensus 56 ~~ik~Y~~~GG~Pe~vV~~L 75 (295)
...+....+||+.+.+|+.|
T Consensus 18 ~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHhC
Confidence 34667778889999988876
No 89
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=20.10 E-value=5.7e+02 Score=23.31 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q psy15689 83 AQMANLVAEWLILGGVNVTEVQAMVENHLK 112 (295)
Q Consensus 83 aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk 112 (295)
.-++.-+.+|....|.++++-+.++..-++
T Consensus 160 ~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~ 189 (245)
T TIGR00112 160 FLFIEALADAGVKQGLPRELALELAAQTVK 189 (245)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 567778899999999999999888876665
Done!