Query psy15689
Match_columns 295
No_of_seqs 55 out of 57
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:58:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c24_A Putative oxidoreductase 72.1 17 0.00057 31.9 8.7 97 52-152 159-272 (286)
2 2ahr_A Putative pyrroline carb 57.7 72 0.0025 27.1 9.8 90 52-141 134-236 (259)
3 3vu7_H DNA repair protein REV1 57.3 66 0.0023 26.3 8.9 65 81-154 37-105 (124)
4 4fjo_A DNA repair protein REV1 50.9 66 0.0023 24.9 7.6 64 81-153 10-77 (97)
5 3zyq_A Hepatocyte growth facto 43.8 62 0.0021 28.3 7.2 106 31-139 42-163 (226)
6 3dfg_A Xcrecx, regulatory prot 39.9 1.6E+02 0.0054 24.3 10.2 128 30-181 14-152 (162)
7 3a4c_A DNA replication factor 39.4 41 0.0014 27.2 4.8 31 52-82 16-50 (106)
8 1dvp_A HRS, hepatocyte growth 39.2 71 0.0024 27.5 6.8 106 31-139 39-160 (220)
9 1hnr_A H-NS; histone-like prot 37.3 10 0.00035 26.4 0.8 23 120-142 11-33 (47)
10 3nuf_A PRD-containing transcri 37.0 45 0.0015 27.5 4.8 43 76-118 22-65 (119)
11 3nph_B Phycobilisome 32.1 kDa 35.2 59 0.002 27.6 5.4 101 97-200 9-119 (148)
12 2l93_A DNA-binding protein H-N 34.5 13 0.00043 26.8 1.0 23 120-142 11-33 (55)
13 3d5l_A Regulatory protein RECX 33.0 2.4E+02 0.0082 24.4 10.8 124 35-181 63-199 (221)
14 3m91_B Prokaryotic ubiquitin-l 31.7 5 0.00017 27.9 -1.5 27 40-66 17-43 (44)
15 3pru_C Phycobilisome 32.1 kDa 30.8 78 0.0027 27.1 5.4 101 97-200 14-124 (154)
16 3e3v_A Regulatory protein RECX 30.4 73 0.0025 26.8 5.3 73 108-180 72-155 (177)
17 1l8q_A Chromosomal replication 28.7 2E+02 0.007 25.0 8.1 37 105-142 226-263 (324)
18 2xzm_O RPS13E; ribosome, trans 28.2 40 0.0014 28.9 3.1 43 252-294 31-80 (153)
19 3ohw_B Phycobilisome LCM core- 27.8 87 0.003 26.6 5.2 97 97-196 19-127 (148)
20 3m9d_G Prokaryotic ubiquitin-l 27.6 13 0.00046 27.9 0.1 23 44-66 45-67 (68)
21 3tri_A Pyrroline-5-carboxylate 27.4 1.6E+02 0.0056 25.8 7.3 71 84-155 183-258 (280)
22 3osj_A Phycobilisome LCM core- 27.1 96 0.0033 26.3 5.3 101 97-200 19-130 (147)
23 3u5c_N S27A, YS15, 40S ribosom 26.7 35 0.0012 29.2 2.5 43 252-294 29-78 (151)
24 1jr3_A DNA polymerase III subu 26.4 3.2E+02 0.011 23.8 9.3 24 50-75 198-221 (373)
25 2izz_A Pyrroline-5-carboxylate 26.3 1.5E+02 0.0051 26.5 6.9 31 83-113 204-234 (322)
26 2db7_A Hairy/enhancer-OF-split 25.8 1.3E+02 0.0044 21.9 5.2 45 73-117 13-61 (64)
27 2ev1_A Hypothetical protein RV 25.5 2.5E+02 0.0086 25.0 8.1 39 52-94 120-158 (222)
28 1o1x_A Ribose-5-phosphate isom 25.0 42 0.0014 28.6 2.8 44 250-293 24-67 (155)
29 3c5y_A Ribose/galactose isomer 24.4 12 0.00042 33.9 -0.7 71 223-293 8-81 (231)
30 4abx_A DNA repair protein RECN 24.3 3E+02 0.01 22.7 11.2 78 37-118 55-141 (175)
31 3he8_A Ribose-5-phosphate isom 24.3 45 0.0015 28.2 2.8 44 250-293 12-55 (149)
32 2af7_A Gamma-carboxymuconolact 24.1 1.1E+02 0.0037 23.9 4.9 40 51-90 70-111 (125)
33 3pvs_A Replication-associated 23.8 4.7E+02 0.016 24.7 11.2 44 135-178 275-328 (447)
34 3u61_B DNA polymerase accessor 23.2 1.6E+02 0.0054 25.6 6.3 19 136-156 257-275 (324)
35 1rij_A E6APN1 peptide; Trp-CAG 22.8 30 0.001 21.1 1.0 13 86-98 3-15 (26)
36 1tj7_A Argininosuccinate lyase 22.8 1.9E+02 0.0065 27.9 7.3 47 227-273 362-408 (457)
37 3ezq_A Tumor necrosis factor r 22.4 2.5E+02 0.0085 22.6 6.8 51 55-106 20-72 (115)
38 2jt1_A PEFI protein; solution 21.7 2E+02 0.0069 21.1 5.7 21 96-120 34-54 (77)
39 1juq_A ADP-ribosylation factor 21.3 1.3E+02 0.0046 25.2 5.2 95 31-130 47-164 (171)
40 2dg7_A Putative transcriptiona 21.0 2.8E+02 0.0094 21.4 6.8 64 31-102 78-142 (195)
41 2vvr_A Ribose-5-phosphate isom 21.0 49 0.0017 27.9 2.3 43 251-293 14-56 (149)
42 3ph3_A Ribose-5-phosphate isom 20.7 57 0.002 28.2 2.8 43 251-293 33-75 (169)
43 2vvp_A Ribose-5-phosphate isom 20.6 54 0.0019 28.0 2.6 45 249-293 14-59 (162)
44 1c3c_A Protein (adenylosuccina 20.4 2.4E+02 0.0081 26.8 7.3 47 226-272 347-393 (429)
45 2g3q_A Protein YBL047C; endocy 20.3 81 0.0028 20.4 2.9 23 56-78 20-42 (43)
46 1q5n_A 3-carboxy-CIS,CIS-mucon 20.3 1.9E+02 0.0064 27.8 6.6 46 226-272 366-411 (454)
47 2lev_A LER; transcription regu 20.2 38 0.0013 24.5 1.3 19 125-143 23-41 (57)
48 2bwb_A Ubiquitin-like protein 20.2 76 0.0026 21.4 2.8 22 56-77 24-45 (46)
49 1x4q_A U4/U6 small nuclear rib 20.0 1.5E+02 0.0051 22.8 4.8 48 96-152 30-79 (92)
No 1
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=72.08 E-value=17 Score=31.87 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHcCCC----h-----H--HHH-HHHhhhhhhHHH---HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-
Q psy15689 52 PGIFSQLKRYFQAGGN----P-----E--QVI-ELLSQNYKAVAQ---MANLVAEWLILGGVNVTEVQAMVENHLKDMI- 115 (295)
Q Consensus 52 p~i~~~ik~Y~~~GG~----P-----e--~vV-~~Ls~~Y~G~aQ---m~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li- 115 (295)
+.....++.+++.=|. + . ..+ ..++ |..+.+. +++.+..+....|+++++..+++...++...
T Consensus 159 ~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~-n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~~~~~~ 237 (286)
T 3c24_A 159 EEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLS-EMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIA 237 (286)
T ss_dssp THHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHH-HTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4456667777766443 2 1 122 2222 3334444 4455777788889999999888887777643
Q ss_pred -HhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHH
Q psy15689 116 -LKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIY 152 (295)
Q Consensus 116 -~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy 152 (295)
...++|....+++... -++|.++|+.+.|+.++=
T Consensus 238 ~~~~~~p~~~~di~~~~---i~~~~~~l~~~~~~~~~~ 272 (286)
T 3c24_A 238 MWFGYSPKVPSDAALRL---MEFAKDIVVKEDWREALN 272 (286)
T ss_dssp HHTTSSCCC---CCSTT---HHHHHHHHBCTTGGGGGC
T ss_pred HHHhhCCchhHHHHHHH---HHHHHHHHhccCHHHhcC
Confidence 3447888777777553 688888888888876543
No 2
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=57.71 E-value=72 Score=27.09 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=48.8
Q ss_pred ccHHHHHHHHHHcCCCh-------HHHHHHHhhh-hhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH--HhhC--
Q psy15689 52 PGIFSQLKRYFQAGGNP-------EQVIELLSQN-YKAVAQMANLVAEWLILGGVNVTEVQAMVENHLKDMI--LKTF-- 119 (295)
Q Consensus 52 p~i~~~ik~Y~~~GG~P-------e~vV~~Ls~~-Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li--~k~F-- 119 (295)
+..+..++.+++.-|.+ -+.+-.|+.+ ..-...+.+.+++++...|+++++..+++..-++... .+..
T Consensus 134 ~~~~~~~~~ll~~~G~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (259)
T 2ahr_A 134 QELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQ 213 (259)
T ss_dssp HHHHHHHHHHHHTTEEEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhCCCEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455666666665532 1122222211 1113567788888999999999988777765555442 2333
Q ss_pred Ccchh-hhhhccCCCCcHHHHHH
Q psy15689 120 DPKKA-DTIFTEEGETPAWLTEM 141 (295)
Q Consensus 120 Dp~ka-D~ift~~g~~p~WL~~M 141 (295)
+|... |.+++..+.+-..|+.|
T Consensus 214 ~p~~l~~~~~~p~~~~~~~~~~l 236 (259)
T 2ahr_A 214 SPHDFIDAICSPGGTTIAGLMEL 236 (259)
T ss_dssp CHHHHHHHHCCTTSHHHHHHHHH
T ss_pred CHHHHHHhCCCCChhHHHHHHHH
Confidence 36555 44444433444434333
No 3
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=57.28 E-value=66 Score=26.26 Aligned_cols=65 Identities=15% Similarity=0.311 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhc---ChhhHHHHHHH
Q psy15689 81 AVAQMANLVAEWLILGGV-NVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIE---HPTWRSLIYRL 154 (295)
Q Consensus 81 G~aQm~nLl~~WL~~~g~-~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~---~~~WR~Liy~L 154 (295)
-.+++=.+|.+|...... .+++| +.+..+|+++|. .=|=+|+..+. .||..+++ +..|+..+=+.
T Consensus 37 ~l~evK~lL~~Wv~s~~~P~~~DV-~~l~~yL~~lVe-ek~Lek~~~vl-------k~l~rlv~~~~~~~W~~Ay~~I 105 (124)
T 3vu7_H 37 EFNDVKTLLREWITTISDPMEEDI-LQVVKYCTDLIE-EKDLEKLDLVI-------KYMKRLMQQSVESVWNMAFDFI 105 (124)
T ss_dssp SHHHHHHHHHHHHHHHCSCCHHHH-HHHHHHHHHHHH-TTCHHHHHHHH-------HHHHHHHHSCSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhh-cccHHHHHHHH-------HHHHHHHhcccccHHHHHHHHH
Confidence 456777888899875543 55666 556888999994 45778888877 78888774 45677665443
No 4
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=50.87 E-value=66 Score=24.86 Aligned_cols=64 Identities=16% Similarity=0.307 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhc---ChhhHHHHHH
Q psy15689 81 AVAQMANLVAEWLILGGV-NVTEVQAMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIE---HPTWRSLIYR 153 (295)
Q Consensus 81 G~aQm~nLl~~WL~~~g~-~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~---~~~WR~Liy~ 153 (295)
..+++=.+|.+|...... .+++| +.+..+|+++|. .=|=+|+..+. .||..+|+ +..|+..+=+
T Consensus 10 ~l~dvr~~l~~Wv~~~~~P~~~DV-~~l~~yL~~lv~-~~~lek~~~vl-------k~l~rlv~~~~~~~W~~A~~~ 77 (97)
T 4fjo_A 10 EFSDVKTLLKEWITTISDPMEEDI-LQVVRYCTDLIE-EKDLEKLDLVI-------KYMKRLMQQSVESVWNMAFDF 77 (97)
T ss_dssp SHHHHHHHHHHHHHHCSSCCHHHH-HHHHHHHHHHHH-TTCHHHHHHHH-------HHHHHHHHHCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhh-ccCHHHHHHHH-------HHHHHHHhcccccHHHHHHHH
Confidence 356777889999976543 45666 556888999994 45777887777 78877773 3557665543
No 5
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.78 E-value=62 Score=28.31 Aligned_cols=106 Identities=16% Similarity=0.308 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHhcCCCCccccccHHHHHHHHHHcCCCh-----------HHHHHHHhhhh--hhHHHHHHHHHHHHHhhC
Q psy15689 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNP-----------EQVIELLSQNY--KAVAQMANLVAEWLILGG 97 (295)
Q Consensus 31 ~~~~~~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~P-----------e~vV~~Ls~~Y--~G~aQm~nLl~~WL~~~g 97 (295)
.+.+.++-..++|..++.=.-=-.+..|-.-++++|.+ ++++.++.... .=..-+..|+..|=....
T Consensus 42 ~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 42 QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 56666666666776655332222334455666777765 33444443322 223456677778876655
Q ss_pred CCHHHHHHHHHHHHHHHHHh--hCCc-chhhhhhccCCCCcHHHH
Q psy15689 98 VNVTEVQAMVENHLKDMILK--TFDP-KKADTIFTEEGETPAWLT 139 (295)
Q Consensus 98 ~~~~ev~~~~e~~Lk~li~k--~FDp-~kaD~ift~~g~~p~WL~ 139 (295)
-++. . ..+.+.-+.+-.+ .|-+ +..|..|+++ .+|.|.+
T Consensus 122 ~~~~-l-~~i~~~Y~~Lk~~G~~FP~~~~~damf~~~-~~p~W~~ 163 (226)
T 3zyq_A 122 NEPK-Y-KVVQDTYQIMKVEGHVFPEFKESDAMFAAE-RAPDWVD 163 (226)
T ss_dssp TCGG-G-HHHHHHHHHHHHHTCCCCCCCGGGGCCCCC-CCCCCCC
T ss_pred CCcc-h-HHHHHHHHHHHhcCCCcccchhHHHhhhcc-ccccccc
Confidence 4443 1 1122223333333 2533 3578888765 5788985
No 6
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=39.92 E-value=1.6e+02 Score=24.27 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=72.5
Q ss_pred CChHHHHHHHHHhcCCCCccccccHHHHHHHHHHcCCChHHHHH----HH-hhhhhhHHHHHHHHHHHHHhhCCCHHHHH
Q psy15689 30 ENPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIE----LL-SQNYKAVAQMANLVAEWLILGGVNVTEVQ 104 (295)
Q Consensus 30 e~~~~~~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~Pe~vV~----~L-s~~Y~G~aQm~nLl~~WL~~~g~~~~ev~ 104 (295)
.+.....+-|++.|+..|. --.-|++++..-|-|+++|+ .| ..||.--..+|..+..=....|.++.-|
T Consensus 14 ~~~~~a~~~Al~~Ls~r~~-----s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~~I- 87 (162)
T 3dfg_A 14 FKEQTPVQRALGLLVHREH-----SKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGPLHI- 87 (162)
T ss_dssp ---CCHHHHHHHHHHHSCC-----CHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCHHHH-
T ss_pred chHHHHHHHHHHHhhchhh-----hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccHHHH-
Confidence 3455667778888887664 23346666766665544433 33 2366666666655544333346666543
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHHh-CCC----c-cchHHHHHHHhhcchhh
Q psy15689 105 AMVENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEE-YPD----C-LMLNFTIKLISDAGFQR 178 (295)
Q Consensus 105 ~~~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE~-~p~----c-l~LnfaIk~IsdaG~q~ 178 (295)
..+|..|-+++..++..+.+. +..|...+..|+++ ++. - ..-.-.++-+.-.||-.
T Consensus 88 ------~~eL~~KGI~~~~I~~al~~~------------~~de~e~a~~l~~Kk~~~~~~~~~~~k~K~~~~L~rrGF~~ 149 (162)
T 3dfg_A 88 ------RAELGTHGLDSDAVSAAMATF------------EGDWTENALDLIRRRFGEDGPVDLAQRRKAADLLARRGFDG 149 (162)
T ss_dssp ------HHHHHHTTCCHHHHHHHHTTC------------CSCHHHHHHHHHHHHHCTTCCCSHHHHHHHHHHHHHTTCCH
T ss_pred ------HHHHHHcCCCHHHHHHHHHhC------------cHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCCH
Confidence 124556778888777777542 12477888888873 322 1 22234555566778876
Q ss_pred hhh
Q psy15689 179 EIT 181 (295)
Q Consensus 179 EI~ 181 (295)
++.
T Consensus 150 ~~I 152 (162)
T 3dfg_A 150 NSI 152 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 7
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=39.36 E-value=41 Score=27.20 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHcCCCh----HHHHHHHhhhhhhH
Q psy15689 52 PGIFSQLKRYFQAGGNP----EQVIELLSQNYKAV 82 (295)
Q Consensus 52 p~i~~~ik~Y~~~GG~P----e~vV~~Ls~~Y~G~ 82 (295)
|.++..|+.-|.+..-| +.++..+.+||++.
T Consensus 16 PelArilR~vFvaEkK~vl~~e~~~~ki~~Syr~~ 50 (106)
T 3a4c_A 16 PELARVLRNVFVSERKPALTMEVVCARMVDSCQTA 50 (106)
T ss_dssp HHHHHHHHHHHHTCSSSEEEHHHHHHHHHHTSCCS
T ss_pred HHHHHHHHHHHHhcccCCccHHHHHHHHHhhhhcc
Confidence 88999999999998877 99999999999974
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.18 E-value=71 Score=27.53 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHhcCCCCccccccHHHHHHHHHHcCCCh-----------HHHHHHHhhh--hhhHHHHHHHHHHHHHhhC
Q psy15689 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNP-----------EQVIELLSQN--YKAVAQMANLVAEWLILGG 97 (295)
Q Consensus 31 ~~~~~~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~P-----------e~vV~~Ls~~--Y~G~aQm~nLl~~WL~~~g 97 (295)
.|.+..+-..++|+.++.=.---.+..+..-++++|.| ++++.++.+. ..=-..+..++-.|-...+
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 66777777777777765432223344566667777765 3444444431 1122345667777776655
Q ss_pred CCHHHHHHHHHHHHHHHHHhh--CCcc-hhhhhhccCCCCcHHHH
Q psy15689 98 VNVTEVQAMVENHLKDMILKT--FDPK-KADTIFTEEGETPAWLT 139 (295)
Q Consensus 98 ~~~~ev~~~~e~~Lk~li~k~--FDp~-kaD~ift~~g~~p~WL~ 139 (295)
.++.- ..+.+..+.+-.+. |.+. ..|.+|+.+ .+|.|.+
T Consensus 119 ~~~~~--~~i~~~y~~Lk~~G~~FP~~~e~~a~f~~~-~~~~W~~ 160 (220)
T 1dvp_A 119 SSDKY--QAIKDTMTILKAKGHTFPELREADAMFTAD-TAPNWAD 160 (220)
T ss_dssp TCSSC--CHHHHHHHHHHHTTCCCCCCCC---CCCCS-CCCCCCC
T ss_pred cchHH--HHHHHHHHHHhhcCcccccccccccccccc-ccccCCC
Confidence 43321 11233344444443 5553 357788744 5777864
No 9
>1hnr_A H-NS; histone-like protein H1, DNA-binding protein; NMR {Escherichia coli} SCOP: a.155.1.1 PDB: 1hns_A
Probab=37.28 E-value=10 Score=26.40 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.1
Q ss_pred CcchhhhhhccCCCCcHHHHHHh
Q psy15689 120 DPKKADTIFTEEGETPAWLTEMI 142 (295)
Q Consensus 120 Dp~kaD~ift~~g~~p~WL~~MI 142 (295)
||+....-+|..|.+|.||.+.|
T Consensus 11 dp~G~~~TWtGrGr~P~wi~~al 33 (47)
T 1hnr_A 11 DENGETKTWTGQGRTPAVIKKAM 33 (47)
T ss_dssp CSSCCCEECCTTSSCCSHHHHHH
T ss_pred CCCCCcccccCCCCCCHHHHHHH
Confidence 78877778999999999999887
No 10
>3nuf_A PRD-containing transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 1.38A {Lactobacillus casei}
Probab=37.01 E-value=45 Score=27.48 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=33.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhhCCCHHHHHHH-HHHHHHHHHHhh
Q psy15689 76 SQNYKAVAQMANLVAEWLILGGVNVTEVQAM-VENHLKDMILKT 118 (295)
Q Consensus 76 s~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~-~e~~Lk~li~k~ 118 (295)
|.++.-..++...+..|+...|..++++|.. +.+||+.+++.-
T Consensus 22 s~~~~~~~~ll~~i~~ll~~~~I~~~~vQ~qmL~sHl~Amv~Rs 65 (119)
T 3nuf_A 22 SSDAQAATALVNYVIKLAAAAEIHFTDLQLQVLTNHLIEMLGRS 65 (119)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3444555566677889999999999999765 489999999863
No 11
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=35.22 E-value=59 Score=27.63 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh----CC-cchhhhhhccCC-CCcHHHHHHhcChhhHHHHHHHHHhCCCccchHHHHHH
Q psy15689 97 GVNVTEVQAMVENHLKDMILKT----FD-PKKADTIFTEEG-ETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKL 170 (295)
Q Consensus 97 g~~~~ev~~~~e~~Lk~li~k~----FD-p~kaD~ift~~g-~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~LnfaIk~ 170 (295)
+.+..+++++++-.-++..-.. ++ ...+.+-|.... +.-++..++-.+...|+.+| +.+|++-++.++.|+
T Consensus 9 ~~s~~~~~~vI~AaYrQVfgn~~~~~seR~~~lESqLrnG~ItVReFVR~LakSe~Yr~~f~---~~~~n~R~IEl~~kh 85 (148)
T 3nph_B 9 RSTEEEVDAVILAVYRQVLGNDHLMSQERLTSAESLLRGREISVRDFVRAVALSEVYRQKFF---HSNPQNRFIELNYKH 85 (148)
T ss_dssp SSCSHHHHHHHHHHHHHHHSCSCCCTTTSCHHHHHHHHTTSSCHHHHHHHHHTSHHHHHHHT---TTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCcccccccccccHHHHHhcCCccHHHHHHHHHccHHHHHHhc---cCCCcchHHHHHhhh
Confidence 4466777777665555544221 11 223344444433 77789999999999999998 478999999999998
Q ss_pred Hhh-cc-hhhhhhhhhh--HHhHHHHHHHHHHHH
Q psy15689 171 ISD-AG-FQREITSIST--AAQQIEVFSRVLKTS 200 (295)
Q Consensus 171 Isd-aG-~q~EI~sv~t--aa~~~eVF~rvL~~~ 200 (295)
+-= += =+.||..-+. |.+-|+-|-..|.++
T Consensus 86 lLGRap~~q~Ei~~~~~i~a~~G~~a~IDslidS 119 (148)
T 3nph_B 86 LLGRAPYDQSEIAFHTDLYHQGGYEAEINSYIDS 119 (148)
T ss_dssp HTSSCCSSHHHHHHHHHHHHHHCHHHHHHHHHTS
T ss_pred hcCCCCCCHHHHHHHHHHHHhcCcHHHHHHHhCc
Confidence 842 11 2566666655 445555554444433
No 12
>2l93_A DNA-binding protein H-NS; at HOOK; NMR {Salmonella typhimurium}
Probab=34.47 E-value=13 Score=26.85 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.0
Q ss_pred CcchhhhhhccCCCCcHHHHHHh
Q psy15689 120 DPKKADTIFTEEGETPAWLTEMI 142 (295)
Q Consensus 120 Dp~kaD~ift~~g~~p~WL~~MI 142 (295)
||+....-+|..|.+|.||.+.|
T Consensus 11 dp~g~~~TWtGrGR~P~wi~~al 33 (55)
T 2l93_A 11 DENGETKTWTGQGRTPAVIKKAM 33 (55)
T ss_dssp SSSSEEEEECSCSSCCHHHHHHH
T ss_pred CCCCCCCcccCCCCCcHHHHHHH
Confidence 68766678999999999999887
No 13
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=33.03 E-value=2.4e+02 Score=24.35 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCCCccccccHHHHHHHHHHcCCChHHHHH-----HHhhhhhhHHHHHHHHHHH-HHhhCCCHHHHHHHHH
Q psy15689 35 VLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNPEQVIE-----LLSQNYKAVAQMANLVAEW-LILGGVNVTEVQAMVE 108 (295)
Q Consensus 35 ~~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~Pe~vV~-----~Ls~~Y~G~aQm~nLl~~W-L~~~g~~~~ev~~~~e 108 (295)
..+-|++.|+..|. --.-|+++++.-|-|+++|+ +-..||.--..+|.....= +...|.++.-|.
T Consensus 63 a~~~Al~~Ls~r~~-----S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~---- 133 (221)
T 3d5l_A 63 AYSRMLDYLSYQMR-----TESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIR---- 133 (221)
T ss_dssp HHHHHHHHHTTSCC-----CHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHH----
T ss_pred HHHHHHHHhccccc-----cHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHH----
Confidence 34445666665553 22334555554444432222 2234555555555443322 222344544431
Q ss_pred HHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHhcChhhHHHHHHHHHh----CCCc---cchHHHHHHHhhcchhhhhh
Q psy15689 109 NHLKDMILKTFDPKKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEE----YPDC---LMLNFTIKLISDAGFQREIT 181 (295)
Q Consensus 109 ~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI~~~~WR~Liy~LaE~----~p~c---l~LnfaIk~IsdaG~q~EI~ 181 (295)
.+|..|-+++..++..+.+- ....|..+...|+++ ++.- ..-.-.++-..-.||..++.
T Consensus 134 ---~eL~~KGI~~~~I~~al~~~-----------~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I 199 (221)
T 3d5l_A 134 ---QHLRQKGIGESDIDDALTQF-----------TPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVY 199 (221)
T ss_dssp ---HHHHHTTCCHHHHHHHGGGC-----------CHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ---HHHHHcCCCHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 23345556665555555431 124677777777762 2331 12445555666688875544
No 14
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=31.71 E-value=5 Score=27.85 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=10.5
Q ss_pred HHhcCCCCccccccHHHHHHHHHHcCC
Q psy15689 40 LEKFSTPDYIMEPGIFSQLKRYFQAGG 66 (295)
Q Consensus 40 ~~~l~~~DaIMEp~i~~~ik~Y~~~GG 66 (295)
-..|..-|.++|.+.-.-++.|+|.||
T Consensus 17 D~lLDeId~vLE~NAeeFV~~fVQKGG 43 (44)
T 3m91_B 17 DDLLDEIDDVLEENAEDFVRAYVQKGG 43 (44)
T ss_dssp HHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHccC
Confidence 344455678899999999999999998
No 15
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=30.79 E-value=78 Score=27.07 Aligned_cols=101 Identities=7% Similarity=0.126 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhC----C-cchhhhhhccCC-CCcHHHHHHhcChhhHHHHHHHHHhCCCccchHHHHHH
Q psy15689 97 GVNVTEVQAMVENHLKDMILKTF----D-PKKADTIFTEEG-ETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKL 170 (295)
Q Consensus 97 g~~~~ev~~~~e~~Lk~li~k~F----D-p~kaD~ift~~g-~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~LnfaIk~ 170 (295)
+.+..+++++++-.-++..-... + ...+-+-|.... +.-++..++-.++..|+.+|+ .++++-++..+.|+
T Consensus 14 ~~s~~~~~~vI~AaYRQVfgn~~~~~seR~~~lESql~nG~ItVReFVR~LakSe~Yr~~f~~---~~~n~R~IEl~~kh 90 (154)
T 3pru_C 14 DFSLDDAKMVIRAVYRQVLGNDYIMDSERLKGAESLLTNGSISVREFVRTVAKSELYKKKFLY---NNFQTRVIELNYKH 90 (154)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSCCCCGGGSCHHHHHHHHHTSSCHHHHHHHHHTSHHHHHHHTT---TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCccccccccccCHHHHHHcCCcCHHHHHHHHHcCHHHHHHhcc---CCCchHHHHHHHHH
Confidence 45677777776655554432111 1 122333343333 678899999999999999984 67778888888887
Q ss_pred Hhh--cchhhhhhhhhh--HHhHHHHHHHHHHHH
Q psy15689 171 ISD--AGFQREITSIST--AAQQIEVFSRVLKTS 200 (295)
Q Consensus 171 Isd--aG~q~EI~sv~t--aa~~~eVF~rvL~~~ 200 (295)
+-= .-=+.||..-+. +.+-|+-|-..|.++
T Consensus 91 lLGR~p~~~~E~~~~~~i~a~~G~~a~IDslidS 124 (154)
T 3pru_C 91 LLGRAPFSEDEVIFHLDLYENQGFDADIDSYIDS 124 (154)
T ss_dssp HHSSCCSCHHHHHHHHHHHHHHCHHHHHHHHHHS
T ss_pred hhCCCCCCHHHHHHHHHHHHccCchhhhhHhhCc
Confidence 742 112556655544 334454444444333
No 16
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=30.45 E-value=73 Score=26.76 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=37.2
Q ss_pred HHHHHHHHHh-hCCcchhhhhhccCCCCcHHHHHHhc---ChhhHHHHHHHHHh----CCCc---cchHHHHHHHhhcch
Q psy15689 108 ENHLKDMILK-TFDPKKADTIFTEEGETPAWLTEMIE---HPTWRSLIYRLAEE----YPDC---LMLNFTIKLISDAGF 176 (295)
Q Consensus 108 e~~Lk~li~k-~FDp~kaD~ift~~g~~p~WL~~MI~---~~~WR~Liy~LaE~----~p~c---l~LnfaIk~IsdaG~ 176 (295)
++.++..+.+ .+-|.+.-.=+..-|-.+.-+++-++ ...|......|+++ ++.. ..-.-.++-+.-.||
T Consensus 72 ~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF 151 (177)
T 3e3v_A 72 ESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGF 151 (177)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCC
Confidence 4444444443 24444444444444444444444442 25688888888773 3322 123344555566788
Q ss_pred hhhh
Q psy15689 177 QREI 180 (295)
Q Consensus 177 q~EI 180 (295)
-.++
T Consensus 152 ~~~~ 155 (177)
T 3e3v_A 152 SYDI 155 (177)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6544
No 17
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=28.72 E-value=2e+02 Score=25.03 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=28.4
Q ss_pred HH-HHHHHHHHHHhhCCcchhhhhhccCCCCcHHHHHHh
Q psy15689 105 AM-VENHLKDMILKTFDPKKADTIFTEEGETPAWLTEMI 142 (295)
Q Consensus 105 ~~-~e~~Lk~li~k~FDp~kaD~ift~~g~~p~WL~~MI 142 (295)
.+ -..++++.+.++|+-..+| +-+..+..+-|+..||
T Consensus 226 ~i~t~~~i~~~~~~~~~~~~~~-i~s~~~~~~~~~~r~i 263 (324)
T 1l8q_A 226 ERDKLMQIVEFVANYYAVKVED-ILSDKRNKRTSEARKI 263 (324)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHH-HSSCCCCSSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCHHH-HhcCCCCCccchHHHH
Confidence 34 5678888899999966554 6666778888998888
No 18
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=28.17 E-value=40 Score=28.91 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHHHHHHH---HhcCCCcchhHhhhcCCCCchhHHHH----HHHHhccC
Q psy15689 252 LAQEITKCA---QQSGHDVTPIIMALNGAAFYPQANQA----LSSMISRN 294 (295)
Q Consensus 252 lsqele~~A---~~~g~~v~~i~~~L~~~~~yp~~~~a----~~sml~~~ 294 (295)
-++|+|+.. +++|+..+.|.+.|...+.-|++... |+.||..|
T Consensus 31 ~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~ 80 (153)
T 2xzm_O 31 TPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKN 80 (153)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHc
Confidence 345666543 57899999999999999998999887 66676654
No 19
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=27.82 E-value=87 Score=26.58 Aligned_cols=97 Identities=12% Similarity=0.264 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCcc-------hhhhhhccCC-CCcHHHHHHhcChhhHHHHHHHHHhCCCccchHHHH
Q psy15689 97 GVNVTEVQAMVENHLKDMILKTFDPK-------KADTIFTEEG-ETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTI 168 (295)
Q Consensus 97 g~~~~ev~~~~e~~Lk~li~k~FDp~-------kaD~ift~~g-~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~LnfaI 168 (295)
+.+..+++++++-.-++..-....|- .+.+-|.... +.-++..++-.++..|+.+| +.+|+.-++.++.
T Consensus 19 ~~~~~~~~~vI~AaYRQVf~~~~~~~~~~~r~~~lESqlrnG~IsVReFVR~LakS~~Yr~~f~---~~~~n~R~IEl~~ 95 (148)
T 3ohw_B 19 TYDKVAVKNAIRAAYRQVFERDLEPYIINSEFTALESKLSNNEINVKEFIEGLGTSELYMKEFY---APYPNTKVIEMGT 95 (148)
T ss_dssp --CHHHHHHHHHHHHHHHHSSCCCHHHHHHHTHHHHHHHHTTSSCHHHHHHHHHTSHHHHHHHT---SSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCccchhhhhcccccHHHHHHcCCcCHHHHHHHHHcCHHHHHHhc---cCCCchHHHHHHh
Confidence 34566666666655554443222332 3334443333 77899999999999999988 4678888888888
Q ss_pred HHHhh--cchhhhhhhhhh--HHhHHHHHHHH
Q psy15689 169 KLISD--AGFQREITSIST--AAQQIEVFSRV 196 (295)
Q Consensus 169 k~Isd--aG~q~EI~sv~t--aa~~~eVF~rv 196 (295)
|++-= .-=+.||...+. |.+-++-|-..
T Consensus 96 khlLGRap~~~~E~~~~~~ila~~G~~a~Ids 127 (148)
T 3ohw_B 96 KHFLGRAPLNQKEIQQYNQILASQGLKAFIGA 127 (148)
T ss_dssp HHHTSSCCSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhhcCCCCCCHHHHHHHHHHHHccCcHHHHHH
Confidence 88742 122566665544 33444444333
No 20
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=27.56 E-value=13 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=8.3
Q ss_pred CCCCccccccHHHHHHHHHHcCC
Q psy15689 44 STPDYIMEPGIFSQLKRYFQAGG 66 (295)
Q Consensus 44 ~~~DaIMEp~i~~~ik~Y~~~GG 66 (295)
..-|.++|.+.-..++.|+|.||
T Consensus 45 DeId~vLe~NAeefV~~fVQKGG 67 (68)
T 3m9d_G 45 DEIDDVLEENAEDFVRAYVQKGG 67 (68)
T ss_dssp HHHTTTSSSCC------------
T ss_pred HHHHHHHHHhHHHHHHHHHHhcC
Confidence 33477889999999999999998
No 21
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=27.37 E-value=1.6e+02 Score=25.80 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----HhhCCcchh-hhhhccCCCCcHHHHHHhcChhhHHHHHHHH
Q psy15689 84 QMANLVAEWLILGGVNVTEVQAMVENHLKDMI----LKTFDPKKA-DTIFTEEGETPAWLTEMIEHPTWRSLIYRLA 155 (295)
Q Consensus 84 Qm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~li----~k~FDp~ka-D~ift~~g~~p~WL~~MI~~~~WR~Liy~La 155 (295)
-++.-|.+|....|+++++-.+++..-+.-.. ....+|... |.+.+-.|.|-+-|..| +....|..+.+-.
T Consensus 183 ~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l~~~v~spgGtT~~~l~~l-e~~g~~~~~~~av 258 (280)
T 3tri_A 183 LIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGTTEQAIKVL-ESGNLRELFIKAL 258 (280)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHCCTTSHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhccCCChHHHHHHHHH-HHCChHHHHHHHH
Confidence 45566778878899999988777665554422 233556655 66666666777777776 5566777766653
No 22
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=27.06 E-value=96 Score=26.31 Aligned_cols=101 Identities=10% Similarity=0.257 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCc------chhhhhhccCC-CCcHHHHHHhcChhhHHHHHHHHHhCCCccchHHHHH
Q psy15689 97 GVNVTEVQAMVENHLKDMILKTFDP------KKADTIFTEEG-ETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIK 169 (295)
Q Consensus 97 g~~~~ev~~~~e~~Lk~li~k~FDp------~kaD~ift~~g-~~p~WL~~MI~~~~WR~Liy~LaE~~p~cl~LnfaIk 169 (295)
+.+.++++++++-.-++..-....+ ..+-+-|.... +.-++..++-.++..|+.+|+ .+++.-++..+.|
T Consensus 19 ~~s~~e~~~vI~AaYRQVf~~~~~~~~~~r~~~lESql~nG~ItVReFIR~LakS~~Yr~~f~~---~~~n~R~IEl~~k 95 (147)
T 3osj_A 19 GLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFE---PFINSRALELAFR 95 (147)
T ss_dssp TCCHHHHHHHHHHHHHHHHSSCCCGGGCHHHHHHHHHHHHTSSCHHHHHHHHHHSHHHHHHHTT---TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCcchhhhhcccccHHHHHHcCCccHHHHHHHHHcCHHHHHHhcc---CCCchHHHHHHhh
Confidence 4567777777766666654211111 12444444433 778999999999999999984 6788888888888
Q ss_pred HHhh--cchhhhhhhhhh--HHhHHHHHHHHHHHH
Q psy15689 170 LISD--AGFQREITSIST--AAQQIEVFSRVLKTS 200 (295)
Q Consensus 170 ~Isd--aG~q~EI~sv~t--aa~~~eVF~rvL~~~ 200 (295)
++-= .-=+.||...+. +.+-++-|-..|.++
T Consensus 96 hlLGR~p~~~~E~~~~~~i~a~~G~~a~IDslidS 130 (147)
T 3osj_A 96 HILGRGPSSREEVQKYFSIVSSGGLPALVDALVDS 130 (147)
T ss_dssp HHHSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhcCCCCCCHHHHHHHHHHHHccCcHhHHHHHhCc
Confidence 8852 223667766655 445555554444443
No 23
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=26.74 E-value=35 Score=29.23 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHHHH---HhcCCCcchhHhhhcCCCCchhHHHH----HHHHhccC
Q psy15689 252 LAQEITKCA---QQSGHDVTPIIMALNGAAFYPQANQA----LSSMISRN 294 (295)
Q Consensus 252 lsqele~~A---~~~g~~v~~i~~~L~~~~~yp~~~~a----~~sml~~~ 294 (295)
-++|+|+.. +++|+..+.|.+.|...+.=|++..+ |+.||..|
T Consensus 29 ~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~ 78 (151)
T 3u5c_N 29 SSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSN 78 (151)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhC
Confidence 355666554 46799999999999999888999887 67777654
No 24
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=26.45 E-value=3.2e+02 Score=23.76 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=12.7
Q ss_pred ccccHHHHHHHHHHcCCChHHHHHHH
Q psy15689 50 MEPGIFSQLKRYFQAGGNPEQVIELL 75 (295)
Q Consensus 50 MEp~i~~~ik~Y~~~GG~Pe~vV~~L 75 (295)
++|+....|-++ +||+|-.+.++|
T Consensus 198 ~~~~a~~~l~~~--~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 HEPRALQLLARA--AEGSLRDALSLT 221 (373)
T ss_dssp BCHHHHHHHHHH--SSSCHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHH
Confidence 455554444433 366666665555
No 25
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=26.34 E-value=1.5e+02 Score=26.45 Aligned_cols=31 Identities=10% Similarity=-0.054 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q psy15689 83 AQMANLVAEWLILGGVNVTEVQAMVENHLKD 113 (295)
Q Consensus 83 aQm~nLl~~WL~~~g~~~~ev~~~~e~~Lk~ 113 (295)
+.+++.++++....|++++...+++...+..
T Consensus 204 ~~~~eala~a~~~~Gl~~~~a~~l~~~~~~g 234 (322)
T 2izz_A 204 FTALDALADGGVKMGLPRRLAVRLGAQALLG 234 (322)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567778888888899998877776655543
No 26
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=25.77 E-value=1.3e+02 Score=21.90 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=35.6
Q ss_pred HHHhhhhh--hHHHHHHHHHHHHHhhC-CCHH-HHHHHHHHHHHHHHHh
Q psy15689 73 ELLSQNYK--AVAQMANLVAEWLILGG-VNVT-EVQAMVENHLKDMILK 117 (295)
Q Consensus 73 ~~Ls~~Y~--G~aQm~nLl~~WL~~~g-~~~~-ev~~~~e~~Lk~li~k 117 (295)
..+.+.|+ ||.+=++.+...|.... +++. +++.-+-+||..-+.+
T Consensus 13 ~~~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~ 61 (64)
T 2db7_A 13 HALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 61 (64)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhc
Confidence 45677887 99999999999999854 5554 6888889999877643
No 27
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=25.55 E-value=2.5e+02 Score=25.03 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy15689 52 PGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLI 94 (295)
Q Consensus 52 p~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~ 94 (295)
......+++++..|-+|..++.++ +...|...-|++|+.
T Consensus 120 V~aLr~l~~lv~~G~~~~~~v~l~----RalGq~~aRLA~Wq~ 158 (222)
T 2ev1_A 120 GEAAARAQRFVELGLNPDQVVLVV----RVLAEGLSHAAEAMR 158 (222)
T ss_dssp HHHHTTHHHHHHTTCCHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 335566999999999888887664 678899999999953
No 28
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=25.02 E-value=42 Score=28.62 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCcchhHhhhcCCCCchhHHHHHHHHhcc
Q psy15689 250 KRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISR 293 (295)
Q Consensus 250 ~rlsqele~~A~~~g~~v~~i~~~L~~~~~yp~~~~a~~sml~~ 293 (295)
-.|.++|-++..++|+.|.++...=..+..||.+...+...+.+
T Consensus 24 ~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~ 67 (155)
T 1o1x_A 24 FELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILS 67 (155)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc
Confidence 45677888888899999998876434455799888777665543
No 29
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=24.43 E-value=12 Score=33.94 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=40.4
Q ss_pred hccchhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHhcCCCcchhHhhh---cCCCCchhHHHHHHHHhcc
Q psy15689 223 CHGQHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMAL---NGAAFYPQANQALSSMISR 293 (295)
Q Consensus 223 C~sehTYlyaQ~lL~~L~~~~~g~~~~~rlsqele~~A~~~g~~v~~i~~~L---~~~~~yp~~~~a~~sml~~ 293 (295)
-|.-|.-||-|.+--.|+.+..-+..=..|.++|-++..++||.|.++.+.= ..+..||.+...+...+.+
T Consensus 8 ~~~~~~~~~~~~mkiali~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~ 81 (231)
T 3c5y_A 8 HHHHHENLYFQGMKIALIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNS 81 (231)
T ss_dssp -----------CCEEEECCCGGGGGGHHHHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHH
T ss_pred cchhhhhHHhhcceEEEEecCCHhhhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHc
Confidence 3555777777766555555543323334888999999999999999986521 1244699888777665543
No 30
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=24.27 E-value=3e+02 Score=22.69 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=53.4
Q ss_pred HHHHHhcCCCCccccccHHHHHHHHHHc-----CCCh--HHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHH-
Q psy15689 37 NECLEKFSTPDYIMEPGIFSQLKRYFQA-----GGNP--EQVIELLSQNYKAVAQMANLVAEWLILGGVNVTEVQAMVE- 108 (295)
Q Consensus 37 ~e~~~~l~~~DaIMEp~i~~~ik~Y~~~-----GG~P--e~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~ev~~~~e- 108 (295)
..+...|+..| +++.+.|+.-.+. +-+| ..+.+.|.+.|....-.+.-|...+..+..+|...+.+=+
T Consensus 55 ~~a~~~L~~~e----~~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~R 130 (175)
T 4abx_A 55 AGGVELLSDGD----LNAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEAR 130 (175)
T ss_dssp HHHHHHHTTSS----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCc----chHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 33455555543 4676666666554 4455 5688888889999888999999999988888887655532
Q ss_pred -HHHHHHHHhh
Q psy15689 109 -NHLKDMILKT 118 (295)
Q Consensus 109 -~~Lk~li~k~ 118 (295)
+.|+.+.+|+
T Consensus 131 L~~l~~L~RKy 141 (175)
T 4abx_A 131 LSALSKLKNKY 141 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 5556665554
No 31
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=24.27 E-value=45 Score=28.21 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCCcchhHhhhcCCCCchhHHHHHHHHhcc
Q psy15689 250 KRLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISR 293 (295)
Q Consensus 250 ~rlsqele~~A~~~g~~v~~i~~~L~~~~~yp~~~~a~~sml~~ 293 (295)
-.|.++|-++-.++||.|.++...=..+..||.+...+...+.+
T Consensus 12 ~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~ 55 (149)
T 3he8_A 12 YNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKS 55 (149)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 34667777777789999988876444566799888777665543
No 32
>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG, TT747, structural genomics, PSI, protein structure initiative; 2.81A {Methanothermobacterthermautotrophicus} SCOP: a.152.1.2
Probab=24.09 E-value=1.1e+02 Score=23.87 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHHcCCChHHHHHHHhh--hhhhHHHHHHHHH
Q psy15689 51 EPGIFSQLKRYFQAGGNPEQVIELLSQ--NYKAVAQMANLVA 90 (295)
Q Consensus 51 Ep~i~~~ik~Y~~~GG~Pe~vV~~Ls~--~Y~G~aQm~nLl~ 90 (295)
++.+-.+++.=.++|-+|+++.+.+.- .|.|.+.+.+.+.
T Consensus 70 ~~cl~~H~~~a~~~G~t~~ei~e~~~~~~~~~G~p~~~~a~~ 111 (125)
T 2af7_A 70 DDQLKSHVRGALNAGCSKDEIIEVMIQMAVYAGFPAAINAVL 111 (125)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 566777777777888888888887765 4778887777654
No 33
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.78 E-value=4.7e+02 Score=24.75 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=25.8
Q ss_pred cHHHHHHhc---Chh--hHHHHHHHHH----hCCCccchHHHHHHHh-hcchhh
Q psy15689 135 PAWLTEMIE---HPT--WRSLIYRLAE----EYPDCLMLNFTIKLIS-DAGFQR 178 (295)
Q Consensus 135 p~WL~~MI~---~~~--WR~Liy~LaE----~~p~cl~LnfaIk~Is-daG~q~ 178 (295)
-.||..|++ +|. -|+|+-.-+| .+|+.+.+-.+--... .-|+++
T Consensus 275 l~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe 328 (447)
T 3pvs_A 275 LYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAE 328 (447)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcH
Confidence 478889985 444 3777777777 5566555443333332 256654
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=23.24 E-value=1.6e+02 Score=25.61 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=11.7
Q ss_pred HHHHHHhcChhhHHHHHHHHH
Q psy15689 136 AWLTEMIEHPTWRSLIYRLAE 156 (295)
Q Consensus 136 ~WL~~MI~~~~WR~Liy~LaE 156 (295)
.|+..|+.+ ...++..|++
T Consensus 257 ~~~~~l~~~--~~~i~~~l~~ 275 (324)
T 3u61_B 257 ALAPKYAAD--YSWFVGKLAE 275 (324)
T ss_dssp HHHHHHSSC--HHHHHHHHHH
T ss_pred HHHHHhccC--HHHHHHHHHH
Confidence 588888883 4455555433
No 35
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=22.85 E-value=30 Score=21.14 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhCC
Q psy15689 86 ANLVAEWLILGGV 98 (295)
Q Consensus 86 ~nLl~~WL~~~g~ 98 (295)
-.||+.||.+.|.
T Consensus 3 qellgqwlkdggp 15 (26)
T 1rij_A 3 QELLGQWLKDGGP 15 (26)
T ss_dssp HHHHHHHHHTTGG
T ss_pred HHHHHHHHHcCCC
Confidence 3689999998875
No 36
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=22.81 E-value=1.9e+02 Score=27.89 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHhcCCCcchhHhh
Q psy15689 227 HTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIMA 273 (295)
Q Consensus 227 hTYlyaQ~lL~~L~~~~~g~~~~~rlsqele~~A~~~g~~v~~i~~~ 273 (295)
..+++++.+.-.|.+..-++..+..+..++-+.|.+.|.++..+.+.
T Consensus 362 ~~~~~at~l~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~g~~l~e~~~~ 408 (457)
T 1tj7_A 362 QGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLS 408 (457)
T ss_dssp STTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCHH
T ss_pred cCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 68899999999998764447788889999999998889877765543
No 37
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=22.41 E-value=2.5e+02 Score=22.61 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhhh--hhHHHHHHHHHHHHHhhCCCHHHHHHH
Q psy15689 55 FSQLKRYFQAGGNPEQVIELLSQNY--KAVAQMANLVAEWLILGGVNVTEVQAM 106 (295)
Q Consensus 55 ~~~ik~Y~~~GG~Pe~vV~~Ls~~Y--~G~aQm~nLl~~WL~~~g~~~~ev~~~ 106 (295)
+...|+|.+.=|=++.-|+.-...| .+.-|...+|..|....|.+ ..++.+
T Consensus 20 ~~~wK~laR~LGlse~~Id~I~~d~~~d~~Eq~~qlLr~W~~~~G~~-aa~~~L 72 (115)
T 3ezq_A 20 LSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKK-EAYDTL 72 (115)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHcCCCChHHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 5678999999999999999888887 35689999999999988843 344333
No 38
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=21.72 E-value=2e+02 Score=21.13 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=15.7
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhCC
Q psy15689 96 GGVNVTEVQAMVENHLKDMILKTFD 120 (295)
Q Consensus 96 ~g~~~~ev~~~~e~~Lk~li~k~FD 120 (295)
+|+++.. +..||+.|..+-+=
T Consensus 34 lgvS~~T----Vrr~L~~Le~kG~I 54 (77)
T 2jt1_A 34 AGLSIYQ----VRLYLEQLHDVGVL 54 (77)
T ss_dssp HTCCHHH----HHHHHHHHHHTTSE
T ss_pred HCCCHHH----HHHHHHHHHHCCcE
Confidence 3777544 68999999988764
No 39
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=21.29 E-value=1.3e+02 Score=25.21 Aligned_cols=95 Identities=15% Similarity=0.261 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHhcCCCCccccccHHHHHHHHHHcCCCh-----------HHHHHHHhhhhhh-------HHHHHHHHHHH
Q psy15689 31 NPQEVLNECLEKFSTPDYIMEPGIFSQLKRYFQAGGNP-----------EQVIELLSQNYKA-------VAQMANLVAEW 92 (295)
Q Consensus 31 ~~~~~~~e~~~~l~~~DaIMEp~i~~~ik~Y~~~GG~P-----------e~vV~~Ls~~Y~G-------~aQm~nLl~~W 92 (295)
.+.+..+-..++|+.++.-.-=-.+..+-.-++++|.+ ++++.+++..|.| ..-+..|+-.|
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 45555565666666655322222344456667777765 5567777655532 34577888888
Q ss_pred HHhhCCCHHHHHHHHHHHHHHHHHh--hC-Ccc--hhhhhhcc
Q psy15689 93 LILGGVNVTEVQAMVENHLKDMILK--TF-DPK--KADTIFTE 130 (295)
Q Consensus 93 L~~~g~~~~ev~~~~e~~Lk~li~k--~F-Dp~--kaD~ift~ 130 (295)
=...+..+. + ...-+.+-.+ .| ||+ ..|++|+.
T Consensus 127 ~~~f~~~~~-i----~~~y~~Lk~~G~~f~~P~~~~~~~~f~~ 164 (171)
T 1juq_A 127 TMALPEEAK-I----KDAYHMLKRQGIVQSDPPIPVDRTLIPS 164 (171)
T ss_dssp HHHCTTCHH-H----HHHHHHHHHTTSCSSCCCBCCCTTCC--
T ss_pred HHHcCCCcH-H----HHHHHHHHHCCCCCCCCCCCccccCCCC
Confidence 888776653 3 3333444444 23 454 35788865
No 40
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=21.03 E-value=2.8e+02 Score=21.42 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHhcCCCCccc-cccHHHHHHHHHHcCCChHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCHHH
Q psy15689 31 NPQEVLNECLEKFSTPDYIM-EPGIFSQLKRYFQAGGNPEQVIELLSQNYKAVAQMANLVAEWLILGGVNVTE 102 (295)
Q Consensus 31 ~~~~~~~e~~~~l~~~DaIM-Ep~i~~~ik~Y~~~GG~Pe~vV~~Ls~~Y~G~aQm~nLl~~WL~~~g~~~~e 102 (295)
++.+.+......+- +++. .|.+...+..... .+| ++-+.+.+. +..+...+..++...|.++.+
T Consensus 78 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~ 142 (195)
T 2dg7_A 78 APLTAVLDAMSQVG--AQLVAQVEGAAQRRAVID--ASP-ELQERERTK---SAAISRAVQDALVRRQVDADT 142 (195)
T ss_dssp CHHHHHHHHHHHHT--TTTTTCCTTHHHHHHHHH--TCH-HHHHHHHHH---HHHHHHHHHHHHHHTTCCHHH
T ss_pred CcHHHHHHHHHHHH--HhhcchHHHHHHHHHHhc--cCH-HHHHHHHHH---HHHHHHHHHHHHHhcCCCccc
Confidence 55555555544432 2222 3444444433322 233 233333332 345566677777766666544
No 41
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=20.96 E-value=49 Score=27.94 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCcchhHhhhcCCCCchhHHHHHHHHhcc
Q psy15689 251 RLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISR 293 (295)
Q Consensus 251 rlsqele~~A~~~g~~v~~i~~~L~~~~~yp~~~~a~~sml~~ 293 (295)
.|.++|-++..++||.|.++...=..+..||.+...+...+.+
T Consensus 14 ~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~ 56 (149)
T 2vvr_A 14 ILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAG 56 (149)
T ss_dssp GGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc
Confidence 3456677788889999988865333455799887777665543
No 42
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=20.74 E-value=57 Score=28.20 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCCcchhHhhhcCCCCchhHHHHHHHHhcc
Q psy15689 251 RLAQEITKCAQQSGHDVTPIIMALNGAAFYPQANQALSSMISR 293 (295)
Q Consensus 251 rlsqele~~A~~~g~~v~~i~~~L~~~~~yp~~~~a~~sml~~ 293 (295)
.|.++|-++-.++|+.|.++...=..+..||.+..++...+.+
T Consensus 33 ~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~ 75 (169)
T 3ph3_A 33 NLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKS 75 (169)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 4667788888889999988876444566799888777665543
No 43
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=20.58 E-value=54 Score=28.05 Aligned_cols=45 Identities=20% Similarity=0.111 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCCcchhHhhhcC-CCCchhHHHHHHHHhcc
Q psy15689 249 VKRLAQEITKCAQQSGHDVTPIIMALNG-AAFYPQANQALSSMISR 293 (295)
Q Consensus 249 ~~rlsqele~~A~~~g~~v~~i~~~L~~-~~~yp~~~~a~~sml~~ 293 (295)
--.|.++|-++..++||.|.++...=.. +..||.+...+...+.+
T Consensus 14 G~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~ 59 (162)
T 2vvp_A 14 GYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVA 59 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHc
Confidence 3456677888888999999988764333 45799887776655443
No 44
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=20.37 E-value=2.4e+02 Score=26.81 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHhcCCCcchhHh
Q psy15689 226 QHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIM 272 (295)
Q Consensus 226 ehTYlyaQ~lL~~L~~~~~g~~~~~rlsqele~~A~~~g~~v~~i~~ 272 (295)
...+++|+.+.-.|....=|...+.++.+++-+.|.+.|.++..+..
T Consensus 347 s~~~~~a~~la~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~ 393 (429)
T 1c3c_A 347 TKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLL 393 (429)
T ss_dssp TTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred ccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHh
Confidence 47788999999999987556778888989999999999988877755
No 45
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.35 E-value=81 Score=20.39 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCChHHHHHHHhhh
Q psy15689 56 SQLKRYFQAGGNPEQVIELLSQN 78 (295)
Q Consensus 56 ~~ik~Y~~~GG~Pe~vV~~Ls~~ 78 (295)
..++.+..++|+++.+++.|-++
T Consensus 20 ~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 20 EAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHhCcCHHHHHHHHHcC
Confidence 34567777888999888888654
No 46
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=20.26 E-value=1.9e+02 Score=27.79 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHhcCCCcchhHh
Q psy15689 226 QHTYVYSQVLLQVLSLESKGGSKVKRLAQEITKCAQQSGHDVTPIIM 272 (295)
Q Consensus 226 ehTYlyaQ~lL~~L~~~~~g~~~~~rlsqele~~A~~~g~~v~~i~~ 272 (295)
...+++|+.+.-.|... =|...+.++.+++-+.|.+.|.++..+..
T Consensus 366 s~~~~~ae~l~~~L~~~-ig~~~A~~iv~~~~~~a~~~g~~l~e~~~ 411 (454)
T 1q5n_A 366 THGLIMAEAVMMALAPH-MGRLNAHHVVEAACKTAVAEQKHLKDIIS 411 (454)
T ss_dssp TTTGGGHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred CcChhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhCCCHHHHHh
Confidence 37788999999999887 67788999999999999889988777654
No 47
>2lev_A LER; transcription regulator-DNA complex, arginine-minor-groove recognition; HET: DNA; NMR {Escherichia coli}
Probab=20.21 E-value=38 Score=24.51 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=15.9
Q ss_pred hhhhccCCCCcHHHHHHhc
Q psy15689 125 DTIFTEEGETPAWLTEMIE 143 (295)
Q Consensus 125 D~ift~~g~~p~WL~~MI~ 143 (295)
-.-+|..|.+|.||.+.|+
T Consensus 23 g~TWtGrGR~P~Wi~~al~ 41 (57)
T 2lev_A 23 GQTWSGVGRQPRWLKEALL 41 (57)
T ss_dssp CCEECSSSCCCHHHHHHHH
T ss_pred CCeeCCCCCCCHHHHHHHH
Confidence 4568889999999998875
No 48
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.19 E-value=76 Score=21.36 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCChHHHHHHHhh
Q psy15689 56 SQLKRYFQAGGNPEQVIELLSQ 77 (295)
Q Consensus 56 ~~ik~Y~~~GG~Pe~vV~~Ls~ 77 (295)
..++....++|+++.+|+.|-+
T Consensus 24 ~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 24 RNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHHHc
Confidence 3477788889999999998864
No 49
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.02 E-value=1.5e+02 Score=22.81 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=28.3
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhCCcchhhhhhccCC--CCcHHHHHHhcChhhHHHHH
Q psy15689 96 GGVNVTEVQAMVENHLKDMILKTFDPKKADTIFTEEG--ETPAWLTEMIEHPTWRSLIY 152 (295)
Q Consensus 96 ~g~~~~ev~~~~e~~Lk~li~k~FDp~kaD~ift~~g--~~p~WL~~MI~~~~WR~Liy 152 (295)
+|.....|-+.+.++|+ ++.||++.-.-++.=- .++.+ -..-||.|++
T Consensus 30 LG~eD~~lVd~i~~~l~----~~~dpk~l~~~L~~fLd~~a~~F-----v~eLW~lL~~ 79 (92)
T 1x4q_A 30 LGFSEPTVVTAALNCVG----KGMDKKKAADHLKPFLDDSTLRF-----VDKLFEAVEE 79 (92)
T ss_dssp HSSCCHHHHHHHHHHHH----TTCCHHHHHHHHTTTTGGGTHHH-----HHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHH----cCCCHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHH
Confidence 68777766555555555 8899987765554311 23333 3344777754
Done!